BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646107|ref|NP_208289.1| hypothetical protein
[Helicobacter pylori 26695]
(355 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208289.1| (NC_000915) hypothetical protein [Helicoba... 697 0.0
ref|NP_224109.1| (NC_000921) putative [Helicobacter pylori ... 691 0.0
ref|NP_281504.1| (NC_002163) putative integral membrane pro... 243 3e-63
ref|NP_603928.1| (NC_003454) Hypothetical membrane-spanning... 50 4e-05
ref|NP_662433.1| (NC_002932) conserved hypothetical protein... 49 7e-05
ref|NP_232128.1| (NC_002505) conserved hypothetical protein... 45 0.001
ref|NP_252516.1| (NC_002516) conserved hypothetical protein... 43 0.005
>ref|NP_208289.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||B64707 hypothetical protein HP1498 - Helicobacter pylori (strain 26695)
gb|AAD08544.1| (AE000648) H. pylori predicted coding region HP1498 [Helicobacter
pylori 26695]
Length = 355
Score = 697 bits (1800), Expect = 0.0
Identities = 355/355 (100%), Positives = 355/355 (100%)
Query: 1 MRLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSANMIILFFTYDILFALNYT 60
MRLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSANMIILFFTYDILFALNYT
Sbjct: 1 MRLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSANMIILFFTYDILFALNYT 60
Query: 61 LPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAIYVGLNATPFVY 120
LPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAIYVGLNATPFVY
Sbjct: 61 LPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAIYVGLNATPFVY 120
Query: 121 MEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLESYAE 180
MEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLESYAE
Sbjct: 121 MEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLESYAE 180
Query: 181 AKEAFFEDKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPKVLDTIYQNKPA 240
AKEAFFEDKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPKVLDTIYQNKPA
Sbjct: 181 AKEAFFEDKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPKVLDTIYQNKPA 240
Query: 241 VSITDALLSLHALVRQNADTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENLALL 300
VSITDALLSLHALVRQNADTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENLALL
Sbjct: 241 VSITDALLSLHALVRQNADTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENLALL 300
Query: 301 GLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFIFLALSLWYFKKLNKRL 355
GLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFIFLALSLWYFKKLNKRL
Sbjct: 301 GLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFIFLALSLWYFKKLNKRL 355
>ref|NP_224109.1| (NC_000921) putative [Helicobacter pylori J99]
pir||H71812 hypothetical protein jhp1391 - Helicobacter pylori (strain J99)
gb|AAD06972.1| (AE001561) putative [Helicobacter pylori J99]
Length = 355
Score = 691 bits (1782), Expect = 0.0
Identities = 349/355 (98%), Positives = 353/355 (99%)
Query: 1 MRLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSANMIILFFTYDILFALNYT 60
MRLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSANMIILFFTYDILFALNYT
Sbjct: 1 MRLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSANMIILFFTYDILFALNYT 60
Query: 61 LPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAIYVGLNATPFVY 120
LPISLLLAMVLFYI FIKSNQYTALLSIGFSKCQILSPIFLISLFFTA+YVGLNATPFVY
Sbjct: 61 LPISLLLAMVLFYITFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPFVY 120
Query: 121 MEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLESYAE 180
MEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLESYAE
Sbjct: 121 MEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLESYAE 180
Query: 181 AKEAFFEDKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPKVLDTIYQNKPA 240
AKEAFFEDKYWILHDTTIYEMPLSFELGANAL+TT L+TFKTLKNFRPKVLDTIYQNKPA
Sbjct: 181 AKEAFFEDKYWILHDTTIYEMPLSFELGANALNTTHLETFKTLKNFRPKVLDTIYQNKPA 240
Query: 241 VSITDALLSLHALVRQNADTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENLALL 300
VSITDALLSLHALVRQNADTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENLALL
Sbjct: 241 VSITDALLSLHALVRQNADTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENLALL 300
Query: 301 GLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFIFLALSLWYFKKLNKRL 355
GLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFF+FLALSLWYFKKLNKRL
Sbjct: 301 GLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALSLWYFKKLNKRL 355
>ref|NP_281504.1| (NC_002163) putative integral membrane protein [Campylobacter
jejuni]
pir||E81450 probable integral membrane protein Cj0313 [imported] -
Campylobacter jejuni (strain NCTC 11168)
emb|CAB72780.1| (AL139074) putative integral membrane protein [Campylobacter
jejuni]
Length = 352
Score = 243 bits (619), Expect = 3e-63
Identities = 125/347 (36%), Positives = 202/347 (58%), Gaps = 1/347 (0%)
Query: 4 FRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPDSANMIILFFTYDILFALNYTLPI 63
FRF+ Y K F I+ +L F+ GID L +P +AN+ +L+ + A+ Y LPI
Sbjct: 5 FRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSFSAVPYVLPI 64
Query: 64 SLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAIYVGLNATPFVYMEE 123
SL+ A+V+ I+ I++N++ +L ++G S+ ++ FL +LFF IY+GLN T F Y +
Sbjct: 65 SLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNFTSFAYAND 124
Query: 124 KTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLESYAEAKE 183
+N++ ++ S + +K+N+++VY KIN AQNIK+F + D L S+A AK
Sbjct: 125 YKRNILKNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNINDLNLSSFASAKN 184
Query: 184 AFFEDKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPKVLDTIYQNKPAVSI 243
A FE + WIL D I +P ++EL + L K+L+ F+PK+++ + N SI
Sbjct: 185 AHFEGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFKPKIIEGVASNSD-YSI 243
Query: 244 TDALLSLHALVRQNADTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENLALLGLK 303
+DAL S QN +T ++ LY F PFF PFL +++ YF P +AR+ NLA +
Sbjct: 244 SDALESFELFKAQNVNTDTLKINLYKFVFTPFFAPFLMLIMYYFFPVIARFFNLAFVTFI 303
Query: 304 FIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFIFLALSLWYFKK 350
++TL++WG+ F L + S + ++ EIG++ P I LS + + K
Sbjct: 304 AFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILGCLSAYMYYK 350
>ref|NP_603928.1| (NC_003454) Hypothetical membrane-spanning protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gb|AAL95227.1| (AE010610) Hypothetical membrane-spanning protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 359
Score = 50.1 bits (118), Expect = 4e-05
Identities = 64/289 (22%), Positives = 128/289 (44%), Gaps = 24/289 (8%)
Query: 57 LNYTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLI----SLFFTAIYVG 112
L T+PI + L +++ + F ++++ A++S G S IL PI I S+F +
Sbjct: 61 LTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRDILKPILAIAIGASIFIVFLQES 120
Query: 113 LNATPFVYMEEKTQNLIYKDNSLSVSEHLLVKYNDDY-VYFDKINPLLQKAQNIKVF-RL 170
+ F+ ++ + Y++ + E + D+Y +Y D+++ KA+NI F +
Sbjct: 121 IIPRSFIKLKYVGTKIAYENPVFQLKEKTFIDNLDEYSIYVDEVSS-DGKAKNIIAFEKP 179
Query: 171 KDKT-LESYAEAKEAFFEDKYWILHDTTIYEMPLSFELG-ANALSTTRLKTFKTLKNFRP 228
+DK +EAF++D I+ ++ E G N + T K F+
Sbjct: 180 EDKNKFPMVLTGEEAFWKDSAIIIKESQFVSFD---EKGKKNLVGTFDEKRVVLTAYFQD 236
Query: 229 KVLDTIYQNKPAVSITDALLSLHALVRQNADTKKVRSFLYVFAILPFFVPFLSVLIAYFS 288
L+ ++ A+SI D + L ++ T+ ++ + +F L + + + F
Sbjct: 237 --LNIKIKDVEALSIIDLIKGL----KKVEATEVIKYKIEIFRKLALVFSTVPLAVIGFC 290
Query: 289 PSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPF 337
SL + + K+ + ++ + FA F GI++ G L+PF
Sbjct: 291 LSLGHHR----ISKKYSFVLAMI--IVFAYIIFLNIGIVMATAGKLNPF 333
>ref|NP_662433.1| (NC_002932) conserved hypothetical protein [Chlorobium tepidum TLS]
gb|AAM72775.1| (AE012910) conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 384
Score = 49.3 bits (116), Expect = 7e-05
Identities = 71/356 (19%), Positives = 136/356 (37%), Gaps = 18/356 (5%)
Query: 5 RFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD---SANMIILFFTYDILFALNYTL 61
R++ + FL L + F+ I+ ++ D+ D S I++++ + T
Sbjct: 32 RYIARQFLTIFLFALASFAALFILINLVENLDRFLDRHISFGRILIYYLSGLPDTFLLTS 91
Query: 62 PISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAIYVGLNA---TPF 118
P+S+LLA + ++ AL S G S +++ P L+++ A+ +N+ P
Sbjct: 92 PLSVLLASLFVTGKLSMQSELPALKSAGMSLSRLMKPFLLVTMAIAALNT-INSCFIAPA 150
Query: 119 VYMEEKTQNLIYKDNSLSVSEHLL--VKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLE 176
+Y K Y E L + N+ + KI P + A + + +
Sbjct: 151 MYDWSKGFEKRYLKKQQDNGEEPLHIRESNNRILTVAKIGPDKKSATTVSLETFNGSQIV 210
Query: 177 SY--AEAKEAFFEDKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPKVLDTI 234
S A++ KYWI ++T +F GA L TR + P I
Sbjct: 211 SRIDADSLRIITRHKYWIFYNT----KQRTFSKGAETL-VTRAGADTLKLSLAPNTFKMI 265
Query: 235 YQNKPAVSITDALLSLHALVRQN-ADTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSLAR 293
+ ++I + + R ++ L+ LP + VLI S +
Sbjct: 266 DTDPDEMNIVQHIDFIWQKARSGLPGLERATVKLHTKLALP-LASMIIVLIGVPLSSKKK 324
Query: 294 YENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFIFLALSLWYFK 349
LA+ ++I L+ G+ +G G+L P + P +F+ + ++
Sbjct: 325 RSGLAVEISISLLIGLLYLGMLKTIGSLGYDGLLNPVLAAWLPDILFIIAGTFLYR 380
>ref|NP_232128.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||F82069 conserved hypothetical protein VC2499 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF95641.1| (AE004319) conserved hypothetical protein [Vibrio cholerae]
Length = 356
Score = 45.4 bits (106), Expect = 0.001
Identities = 62/354 (17%), Positives = 126/354 (35%), Gaps = 16/354 (4%)
Query: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSL-KYADKMPDSAN------MIILFFTYDILF 55
+F+ + WY + + + + FVG+ + KY +++ +LF I
Sbjct: 1 MFKILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPR 60
Query: 56 ALNYTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIF--LISLFFTAIYVGL 113
+ P++ LL ++ A S++ + + GFSK I + I L +G
Sbjct: 61 DVEMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLGE 120
Query: 114 NATPFVYMEEKTQNLIYKDNS--LSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLK 171
P + +SV + + +D+++ K+ N+ F
Sbjct: 121 WGAPQAQKMARDMRAFATSGGAIMSVRTGVWARDANDFIFIAKVENEHLYGLNLWRFDEN 180
Query: 172 DKTLESYAEAKEAFFEDKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPKVL 231
K + + + W++ D + + E+ +L R +T + P L
Sbjct: 181 KKLSTVIFSEQVDYVANNEWLMKDAVLTRLVNDIEISKESLPEYRWRT-----SLAPDKL 235
Query: 232 DTIYQNKPAVSITDALLSLHALVRQNADTKKVRSFLYVFAILPFFVPFLSVLIAYFSPSL 291
+ +S+T +H L D+ + L+ P + + ++ F
Sbjct: 236 AVVTVKPEELSLTGLSDYVHYLKASEQDSSRYELALWRKVTQPISIAVMMLMALSFIFGP 295
Query: 292 ARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFIFLALSL 345
R + L +I + G S+ L P G L+P +FLA++L
Sbjct: 296 LRSVTMGARILSGVIAGFSFYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIAL 349
>ref|NP_252516.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||H83166 conserved hypothetical protein PA3827 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG07214.1|AE004800_3 (AE004800) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 355
Score = 43.1 bits (100), Expect = 0.005
Identities = 75/369 (20%), Positives = 140/369 (37%), Gaps = 36/369 (9%)
Query: 1 MRLFRFVGWYYFKYFLIVL---LALELFFVGIDSLKYADKMPDSANMIILFF------TY 51
++L R++G F L VL L L L F ID L + + F Y
Sbjct: 2 VKLDRYIGVTVFVAILAVLGVILGLALLFAFIDELNDISASYGIGDALRFIFLTAPRRAY 61
Query: 52 DILFALNYTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIF--LISLFFTAI 109
D+L P++ L+ ++ +++ T + + G S +I+ + ++ L I
Sbjct: 62 DML-------PMAALIGCLVGLGTLASNSELTIMRAAGVSLSRIVWAVMKPMLVLMLAGI 114
Query: 110 YVGLNATPFVYMEEKTQNLIYKD--NSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKV 167
VG P+ ++ + + +S S L + +Y++ + + P +
Sbjct: 115 LVGEYVAPWTENIAQSGRALAQGGGDSQSSKRGLWHRQGREYIHINAVQPN-GVLYGVTR 173
Query: 168 FRLKDKT-LESYAEAKEAFFEDKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNF 226
+R ++ LES + AK A FE +W L + T +L T +
Sbjct: 174 YRFDEQRGLESASFAKRARFETDHWQLEEVT----TTLLHPREKRSEVVKLPTERWDAQL 229
Query: 227 RPKVLDTIYQNKPAVSITDALLSLHALVRQNADTKKVRSFLYVFAILPFFVPFLSVLIAY 286
P++L+T+ A+SI+ +H L Q + + + + P L ++
Sbjct: 230 SPQLLNTVVMEPEALSISGLWQYIHYLADQGLNNNRYWLAFWTKVLQPLVTAALVLMAIS 289
Query: 287 FSPSLARYENLALLGLKFIIITLVVWGLFF-----ALGKFSISGILIPEIGVLSPFFIFL 341
F + L + L I T V+ G F LG S+ P + V+ P I
Sbjct: 290 FI-----FGPLRSVTLGQRIFTGVLVGFVFRIAQDLLGPSSLVFDFPPLLAVVIPASICA 344
Query: 342 ALSLWYFKK 350
+W ++
Sbjct: 345 LAGVWLLRR 353
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.330 0.145 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 205,950,688
Number of Sequences: 1026957
Number of extensions: 8378377
Number of successful extensions: 32675
Number of sequences better than 1.0e-02: 7
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 32670
Number of HSP's gapped (non-prelim): 7
length of query: 355
length of database: 324,149,939
effective HSP length: 122
effective length of query: 233
effective length of database: 198,861,185
effective search space: 46334656105
effective search space used: 46334656105
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 98 (42.4 bits)