BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646111|ref|NP_208293.1| hypothetical protein
[Helicobacter pylori 26695]
(145 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208293.1| (NC_000915) hypothetical protein [Helicoba... 295 7e-80
ref|NP_224113.1| (NC_000921) putative [Helicobacter pylori ... 282 5e-76
ref|NP_281991.1| (NC_002163) putative integral membrane pro... 100 3e-21
ref|NP_273079.1| (NC_003112) conserved hypothetical protein... 64 3e-10
ref|NP_283100.1| (NC_003116) putative integral membrane pro... 62 8e-10
dbj|BAB59302.1| (AP000991) hypothetical protein [Thermoplas... 39 0.009
ref|NP_110678.1| (NC_002689) Predicted membrane protein [Th... 39 0.009
>ref|NP_208293.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64707 hypothetical protein HP1502 - Helicobacter pylori (strain 26695)
gb|AAD08547.1| (AE000648) H. pylori predicted coding region HP1502 [Helicobacter
pylori 26695]
Length = 145
Score = 295 bits (754), Expect = 7e-80
Identities = 145/145 (100%), Positives = 145/145 (100%)
Query: 1 MDAIYPYVLVVHLLCAIIFIGYLFFDGVIFPNVKKMFGEEFANKANTGITQRAIKIMPLC 60
MDAIYPYVLVVHLLCAIIFIGYLFFDGVIFPNVKKMFGEEFANKANTGITQRAIKIMPLC
Sbjct: 1 MDAIYPYVLVVHLLCAIIFIGYLFFDGVIFPNVKKMFGEEFANKANTGITQRAIKIMPLC 60
Query: 61 VLGLVLTGGMMLSQYMGGDKGWCETPFQKILMLKVILALSIFLLVLFSLSCKFLGKKNPI 120
VLGLVLTGGMMLSQYMGGDKGWCETPFQKILMLKVILALSIFLLVLFSLSCKFLGKKNPI
Sbjct: 61 VLGLVLTGGMMLSQYMGGDKGWCETPFQKILMLKVILALSIFLLVLFSLSCKFLGKKNPI 120
Query: 121 GKYIHPIALTFGFLIAILAKTMWFV 145
GKYIHPIALTFGFLIAILAKTMWFV
Sbjct: 121 GKYIHPIALTFGFLIAILAKTMWFV 145
>ref|NP_224113.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71813 hypothetical protein jhp1395 - Helicobacter pylori (strain J99)
gb|AAD06976.1| (AE001561) putative [Helicobacter pylori J99]
Length = 145
Score = 282 bits (721), Expect = 5e-76
Identities = 140/145 (96%), Positives = 140/145 (96%)
Query: 1 MDAIYPYVLVVHLLCAIIFIGYLFFDGVIFPNVKKMFGEEFANKANTGITQRAIKIMPLC 60
MDAIYPYVLVVHLLCAIIFIGYLFFD VIFPNVKKMFGEEFANKANTGI QRAIKIMPLC
Sbjct: 1 MDAIYPYVLVVHLLCAIIFIGYLFFDMVIFPNVKKMFGEEFANKANTGIAQRAIKIMPLC 60
Query: 61 VLGLVLTGGMMLSQYMGGDKGWCETPFQKILMLKVILALSIFLLVLFSLSCKFLGKKNPI 120
VLGLVLTGGMMLSQYMGGDKGWCETPFQKILMLKVILALSIFLLVLFSLSCKFLGKKNPI
Sbjct: 61 VLGLVLTGGMMLSQYMGGDKGWCETPFQKILMLKVILALSIFLLVLFSLSCKFLGKKNPI 120
Query: 121 GKYIHPIALTFGFLIAILAKTMWFV 145
GKY H IAL FGFLIAILAKTMWFV
Sbjct: 121 GKYTHHIALAFGFLIAILAKTMWFV 145
>ref|NP_281991.1| (NC_002163) putative integral membrane protein [Campylobacter
jejuni]
pir||F81355 probable integral membrane protein Cj0830 [imported] -
Campylobacter jejuni (strain NCTC 11168)
emb|CAB73095.1| (AL139076) putative integral membrane protein [Campylobacter
jejuni]
Length = 138
Score = 100 bits (248), Expect = 3e-21
Identities = 61/143 (42%), Positives = 78/143 (53%), Gaps = 13/143 (9%)
Query: 1 MDAIYPYVLVVHLLCAIIFIGYLFFDGVIFPNVKKMFGEEFANKANTGITQRAIKIMPLC 60
M+ YPY L +HLLCAI+FIGYLF D + VKK + N + + +KIMP
Sbjct: 1 MEEFYPYTLTIHLLCAILFIGYLFVDVFVLGVVKK----KNPNFDKSLFSATGVKIMPFV 56
Query: 61 VLGLVLTGGMMLSQYMGGDKGWCETPFQKILMLKVILALSIFLLVLFSLSCKF-LGKKNP 119
VL L L+GG + G+ P + +K+ILA I LV+FSL C F L KKNP
Sbjct: 57 VLLLFLSGGAL--------AGFHFKPLNLLFAVKIILAFGILSLVVFSLFCHFILKKKNP 108
Query: 120 IGKYIHPIALTFGFLIAILAKTM 142
+G +IHP I ILAK M
Sbjct: 109 LGVFIHPFVFVLCIAIVILAKLM 131
>ref|NP_273079.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||C81248 conserved hypothetical protein NMB0013 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF40492.1| (AE002359) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 149
Score = 63.9 bits (154), Expect = 3e-10
Identities = 44/149 (29%), Positives = 80/149 (53%), Gaps = 9/149 (6%)
Query: 3 AIYPYVLVVHLLCAIIFIGYLFFDGVIFPNVKK-MFGEEFANKANTGITQRAIKIMPLCV 61
+IY +VHL CAI F+G +FF+ ++ + E + ++ RA+++MP V
Sbjct: 2 SIYAVAHIVHLYCAIAFVGGVFFEVLVLSVLHTGRVSREARREVEKAMSYRAVRVMPF-V 60
Query: 62 LGLVLTGGMML--SQYMGGDKGWCETPFQKILMLKVILALSIFLLVLFSLSCKFLGKKN- 118
+GL+ G+++ ++Y+ T F +L LK++LA S+ L F+++ + +
Sbjct: 61 VGLLFASGIVMAANRYLSILGEPFATSFGTMLTLKILLAFSV--LAHFAIAVVKMARSTL 118
Query: 119 PIG--KYIHPIALTFGFLIAILAKTMWFV 145
+G KYIH + T LI LAK M+++
Sbjct: 119 TVGWSKYIHAVVFTHMLLIVFLAKAMFYI 147
>ref|NP_283100.1| (NC_003116) putative integral membrane protein [Neisseria
meningitidis Z2491]
pir||H82020 probable integral membrane protein NMA0260 [imported] - Neisseria
meningitidis (group A strain Z2491)
emb|CAB83568.1| (AL162752) putative integral membrane protein [Neisseria
meningitidis Z2491]
Length = 149
Score = 62.4 bits (150), Expect = 8e-10
Identities = 44/149 (29%), Positives = 80/149 (53%), Gaps = 9/149 (6%)
Query: 3 AIYPYVLVVHLLCAIIFIGYLFFDGVIFPNVKK-MFGEEFANKANTGITQRAIKIMPLCV 61
+IY +VHL CAI F+G +FF+ ++ + E + ++ RA+++MP V
Sbjct: 2 SIYAVAHIVHLYCAIAFVGGVFFEVLVLSVLHTGRVSCEARREVEKAMSYRAVRVMPF-V 60
Query: 62 LGLVLTGGMML--SQYMGGDKGWCETPFQKILMLKVILALSIFLLVLFSLSCKFLGKKN- 118
+GL+ G+++ ++Y+ T F +L LK++LA S+ L F+++ + +
Sbjct: 61 VGLLFASGIVMAANRYLSILGEPFATSFGTMLTLKILLAFSV--LAHFAIAVVKMARSTL 118
Query: 119 PIG--KYIHPIALTFGFLIAILAKTMWFV 145
+G KYIH + T LI LAK M+++
Sbjct: 119 TVGWSKYIHTVVFTHMLLIVFLAKAMFYI 147
>dbj|BAB59302.1| (AP000991) hypothetical protein [Thermoplasma volcanium]
Length = 204
Score = 38.9 bits (89), Expect = 0.009
Identities = 31/101 (30%), Positives = 52/101 (50%), Gaps = 3/101 (2%)
Query: 8 VLVVHLLCAIIFIGYLFFDG-VIFPNVKKMFGEEFANKANTGITQRAIKIMPLCVLG-LV 65
VL++H+ +I+FIG FF +++P KM +E GI R + LV
Sbjct: 48 VLIIHVFASIMFIGGSFFIWFIVWPASYKMTKDESMRTKIVGIIGRYFGWWTDATIAILV 107
Query: 66 LTGGMMLSQYMGGDKGWCETPF-QKILMLKVILALSIFLLV 105
++GG + +Y+ G+ G T KIL+ KVI+ + +L+
Sbjct: 108 VSGGYLGYEYIHGNFGLLTTTIGGKILLAKVIVVWIMIVLM 148
>ref|NP_110678.1| (NC_002689) Predicted membrane protein [Thermoplasma volcanium]
Length = 166
Score = 38.9 bits (89), Expect = 0.009
Identities = 31/101 (30%), Positives = 52/101 (50%), Gaps = 3/101 (2%)
Query: 8 VLVVHLLCAIIFIGYLFFDG-VIFPNVKKMFGEEFANKANTGITQRAIKIMPLCVLG-LV 65
VL++H+ +I+FIG FF +++P KM +E GI R + LV
Sbjct: 10 VLIIHVFASIMFIGGSFFIWFIVWPASYKMTKDESMRTKIVGIIGRYFGWWTDATIAILV 69
Query: 66 LTGGMMLSQYMGGDKGWCETPF-QKILMLKVILALSIFLLV 105
++GG + +Y+ G+ G T KIL+ KVI+ + +L+
Sbjct: 70 VSGGYLGYEYIHGNFGLLTTTIGGKILLAKVIVVWIMIVLM 110
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.334 0.150 0.472
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,649,162
Number of Sequences: 1026957
Number of extensions: 3489940
Number of successful extensions: 14340
Number of sequences better than 1.0e-02: 7
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 14332
Number of HSP's gapped (non-prelim): 7
length of query: 145
length of database: 324,149,939
effective HSP length: 121
effective length of query: 24
effective length of database: 199,888,142
effective search space: 4797315408
effective search space used: 4797315408
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 89 (38.9 bits)