BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644781|ref|NP_206951.1| hypothetical protein
[Helicobacter pylori 26695]
(287 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206951.1| (NC_000915) hypothetical protein [Helicoba... 570 e-162
ref|NP_222861.1| (NC_000921) putative [Helicobacter pylori ... 550 e-156
ref|NP_282801.1| (NC_002163) hypothetical protein Cj1674 [C... 332 4e-90
ref|NP_213214.1| (NC_000918) putative protein [Aquifex aeol... 154 8e-37
ref|NP_070532.1| (NC_000917) conserved hypothetical protein... 141 9e-33
ref|NP_559258.1| (NC_003364) conserved hypothetical protein... 119 5e-26
ref|NP_147080.1| (NC_000854) hypothetical protein [Aeropyru... 116 2e-25
ref|NP_393652.1| (NC_002578) conserved hypothetical protein... 110 2e-23
dbj|BAB59426.1| (AP000991) hypothetical protein [Thermoplas... 106 3e-22
ref|NP_110800.1| (NC_002689) Predicted solute-binding prote... 106 3e-22
ref|NP_296910.1| (NC_002620) conserved hypothetical protein... 100 1e-20
ref|NP_294735.1| (NC_001263) conserved hypothetical protein... 95 8e-19
ref|NP_219767.1| (NC_000117) hypothetical protein [Chlamydi... 94 2e-18
ref|NP_224611.1| (NC_000922) CT262 hypothetical protein [Ch... 92 7e-18
ref|NP_628497.1| (NC_003888) conserved hypothetical protein... 84 1e-15
ref|NP_243555.1| (NC_002570) BH2689~unknown conserved prote... 79 4e-14
ref|NP_378121.1| (NC_003106) 288aa long conserved hypotheti... 61 2e-08
ref|NP_343609.1| (NC_002754) Conserved hypothetical protein... 55 7e-07
>ref|NP_206951.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64538 hypothetical protein HP0152 - Helicobacter pylori (strain 26695)
gb|AAD07225.1| (AE000536) H. pylori predicted coding region HP0152 [Helicobacter
pylori 26695]
Length = 287
Score = 570 bits (1470), Expect = e-162
Identities = 287/287 (100%), Positives = 287/287 (100%)
Query: 1 MISVAHSPDADDIFMYYAIKFGWIDCPIKNKAFHNIALDIETLNQEALKNTYDVSAISFG 60
MISVAHSPDADDIFMYYAIKFGWIDCPIKNKAFHNIALDIETLNQEALKNTYDVSAISFG
Sbjct: 1 MISVAHSPDADDIFMYYAIKFGWIDCPIKNKAFHNIALDIETLNQEALKNTYDVSAISFG 60
Query: 61 LYPKIANDYALLPTATSFGNGYGPKLVKKKGVKLKKDFRVALSGEHTTNALLFKIYYKHA 120
LYPKIANDYALLPTATSFGNGYGPKLVKKKGVKLKKDFRVALSGEHTTNALLFKIYYKHA
Sbjct: 61 LYPKIANDYALLPTATSFGNGYGPKLVKKKGVKLKKDFRVALSGEHTTNALLFKIYYKHA 120
Query: 121 RITYMNFLDIEKAVLEEKVHAGVLIHESILDFHNELEVEKELWDVWKELIEVDLPLPLGG 180
RITYMNFLDIEKAVLEEKVHAGVLIHESILDFHNELEVEKELWDVWKELIEVDLPLPLGG
Sbjct: 121 RITYMNFLDIEKAVLEEKVHAGVLIHESILDFHNELEVEKELWDVWKELIEVDLPLPLGG 180
Query: 181 MAIRRSIPLYRAILIKKALIKAVEVALKHQNLLSGMLLERSLIRVNKERLRTYLSLYANE 240
MAIRRSIPLYRAILIKKALIKAVEVALKHQNLLSGMLLERSLIRVNKERLRTYLSLYANE
Sbjct: 181 MAIRRSIPLYRAILIKKALIKAVEVALKHQNLLSGMLLERSLIRVNKERLRTYLSLYANE 240
Query: 241 TSTRLSEIQILAIDKLFELGYQHGFYASLLKTKDCLLTDEYLKYRFS 287
TSTRLSEIQILAIDKLFELGYQHGFYASLLKTKDCLLTDEYLKYRFS
Sbjct: 241 TSTRLSEIQILAIDKLFELGYQHGFYASLLKTKDCLLTDEYLKYRFS 287
>ref|NP_222861.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71967 hypothetical protein jhp0140 - Helicobacter pylori (strain J99)
gb|AAD05733.1| (AE001453) putative [Helicobacter pylori J99]
Length = 287
Score = 550 bits (1418), Expect = e-156
Identities = 276/287 (96%), Positives = 280/287 (97%)
Query: 1 MISVAHSPDADDIFMYYAIKFGWIDCPIKNKAFHNIALDIETLNQEALKNTYDVSAISFG 60
MISVAHSPDADDIFMYYAIKFGWIDCPIKNK FHNIALDIETLNQEALKNTYDVSAISFG
Sbjct: 1 MISVAHSPDADDIFMYYAIKFGWIDCPIKNKIFHNIALDIETLNQEALKNTYDVSAISFG 60
Query: 61 LYPKIANDYALLPTATSFGNGYGPKLVKKKGVKLKKDFRVALSGEHTTNALLFKIYYKHA 120
LYPKIANDYALLPTATSFGNGYGPKLVKKKGVKLKKDFRVALSGEHTTNALLFKIYYKHA
Sbjct: 61 LYPKIANDYALLPTATSFGNGYGPKLVKKKGVKLKKDFRVALSGEHTTNALLFKIYYKHA 120
Query: 121 RITYMNFLDIEKAVLEEKVHAGVLIHESILDFHNELEVEKELWDVWKELIEVDLPLPLGG 180
RI YMNFLDIEKAVLE K HAGVLIHESILD HNELEVEKELWDVWKELIEVDLPLPLGG
Sbjct: 121 RIAYMNFLDIEKAVLEGKAHAGVLIHESILDVHNELEVEKELWDVWKELIEVDLPLPLGG 180
Query: 181 MAIRRSIPLYRAILIKKALIKAVEVALKHQNLLSGMLLERSLIRVNKERLRTYLSLYANE 240
MAIRRSIPLYRAILIKKALIKAVE ALKHQ+LLS MLLERSLIRVNKERL+TYLSLYANE
Sbjct: 181 MAIRRSIPLYRAILIKKALIKAVETALKHQDLLSDMLLERSLIRVNKERLQTYLSLYANE 240
Query: 241 TSTRLSEIQILAIDKLFELGYQHGFYASLLKTKDCLLTDEYLKYRFS 287
TSTRLSE+QILAIDKLFELGYQHGFYA+LLKTKDCLLTDEYLKYRFS
Sbjct: 241 TSTRLSEVQILAIDKLFELGYQHGFYANLLKTKDCLLTDEYLKYRFS 287
>ref|NP_282801.1| (NC_002163) hypothetical protein Cj1674 [Campylobacter jejuni]
pir||G81264 hypothetical protein Cj1674 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73661.1| (AL139079) hypothetical protein Cj1674 [Campylobacter jejuni]
Length = 286
Score = 332 bits (850), Expect = 4e-90
Identities = 168/286 (58%), Positives = 218/286 (75%), Gaps = 3/286 (1%)
Query: 2 ISVAHSPDADDIFMYYAIKFGWIDCPIKNKAFHNIALDIETLNQEALKNTYDVSAISFGL 61
I++AHSPDADDIFMY AIKFGWI + A+ N ALDI+TLN+ ALKN +D +AISFGL
Sbjct: 4 ITIAHSPDADDIFMYMAIKFGWIG---NDFAYENTALDIQTLNEFALKNEFDATAISFGL 60
Query: 62 YPKIANDYALLPTATSFGNGYGPKLVKKKGVKLKKDFRVALSGEHTTNALLFKIYYKHAR 121
YP IA++YALL TA SFG GYGPKL+KKK LK++F+VALSG +TTNAL+F++ Y AR
Sbjct: 61 YPLIASEYALLRTAVSFGEGYGPKLIKKKDTHLKRNFKVALSGANTTNALIFRMKYPEAR 120
Query: 122 ITYMNFLDIEKAVLEEKVHAGVLIHESILDFHNELEVEKELWDVWKELIEVDLPLPLGGM 181
I Y NFLDIE AVL +V AGVLIHESIL+F L VE ELWD+W E + +LPLPLGGM
Sbjct: 121 IIYKNFLDIENAVLSGEVDAGVLIHESILNFDQSLYVEAELWDIWLEFAKENLPLPLGGM 180
Query: 182 AIRRSIPLYRAILIKKALIKAVEVALKHQNLLSGMLLERSLIRVNKERLRTYLSLYANET 241
A+RRS+PL AI I++ L AV++A ++ +L+ ML+ER LIRV++E+L TYL+LYAN+
Sbjct: 181 ALRRSLPLSDAIKIERDLTNAVKIADANRKILAPMLMERKLIRVDEEKLDTYLNLYANKN 240
Query: 242 STRLSEIQILAIDKLFELGYQHGFYASLLKTKDCLLTDEYLKYRFS 287
S +++ Q+LA+D LF+LGY + FY ++ D L+ EY + R S
Sbjct: 241 SISMNQTQLLAVDTLFKLGYDYKFYDKIIHVNDFLIPSEYEEARNS 286
>ref|NP_213214.1| (NC_000918) putative protein [Aquifex aeolicus]
pir||B70328 hypothetical protein aq_313 - Aquifex aeolicus
gb|AAC06617.1| (AE000683) putative protein [Aquifex aeolicus]
Length = 279
Score = 154 bits (390), Expect = 8e-37
Identities = 103/281 (36%), Positives = 157/281 (55%), Gaps = 8/281 (2%)
Query: 2 ISVAHSPDADDIFMYYAIKFGWIDCPIKNKAFHNIALDIETLNQEALKNTYDVSAISFGL 61
I +AHSPD+DD FM+Y + G ID + ++ DIETLN+EALK TY+VSAISF
Sbjct: 3 IRIAHSPDSDDAFMFYPLVKGLIDT--EGLEIEHVLADIETLNREALKGTYEVSAISFHA 60
Query: 62 YPKIANDYALLPTATSFGNGYGPKLVKKKGVKLKKDFRVALSGEHTTNALLFKIYYKHAR 121
YP +A+ YA+LP+ S G GYGP +V ++ + K ++A+ GE TT L K+Y
Sbjct: 61 YPYVADKYAVLPSGGSIGEGYGPIVVAREELGTLKGKKIAVPGELTTAFLTLKLYEPDFE 120
Query: 122 ITYMNFLDIEKAVLEEKVHAGVLIHESILDFHN-ELEVEKELWDVWKELIEVDLPLPLGG 180
+ F I +AVLE KV AG++IHE L + + L+ +L + WKE + LPLPLG
Sbjct: 121 HVVIPFDRIIQAVLEGKVDAGLVIHEGQLSYKDYGLKKIVDLGEWWKE--KYGLPLPLGC 178
Query: 181 MAIRRSIPLYRAILIKKALIKAVEVALK-HQNLLSGMLLERSLIRVNKERLRTYLSLYAN 239
+R+ + I++ + ++VE ALK + L + + + ER + ++S+Y N
Sbjct: 179 NVVRKDLGREVVKKIERLMRESVEYALKERKRALEYAINYARDLSEDLERTQKFVSMYVN 238
Query: 240 ETSTRLSEIQILAIDKLFELGYQHGFYASLLKTKDCLLTDE 280
E + E A+ L LG + G + + K + +DE
Sbjct: 239 ERTVDYGEDGREAVRLLLRLGKERGIIKAEIPEK--IFSDE 277
>ref|NP_070532.1| (NC_000917) conserved hypothetical protein [Archaeoglobus fulgidus]
pir||G69462 conserved hypothetical protein AF1704 - Archaeoglobus fulgidus
gb|AAB89546.1| (AE000986) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 271
Score = 141 bits (355), Expect = 9e-33
Identities = 93/266 (34%), Positives = 149/266 (55%), Gaps = 12/266 (4%)
Query: 2 ISVAHSPDADDIFMYYAIKFGWIDCPIKNKAFHNIALDIETLNQEALKNTYDVSAISFGL 61
I VAH+PDADD FM+YA+ G +D ++ ++ DIETLN++A Y+V+AIS
Sbjct: 3 IRVAHTPDADDAFMFYAMTHGKVDTWLE---IEHVIEDIETLNRKAFNAEYEVTAISAHA 59
Query: 62 YPKIANDYALLPTATSFGNGYGPKLVKKKGVKLKKDFRVALSGEHTTNALLFKIYYKHAR 121
Y + + Y +L S G+GYGP +V K + L R+A+ G +TT LL K+ +
Sbjct: 60 YALLDDKYRILSAGASVGDGYGPVVVAKSEISLDGK-RIAVPGRYTTANLLLKLAVEDFE 118
Query: 122 ITYMNFLDIEKAVLEEKVHAGVLIHESILDFHN-ELEVEKELWDVWKELIEVDLPLPLGG 180
M F I +AVL+E+V AG+LIHE + + + L+ +LWD W E +V LPLPLG
Sbjct: 119 PVEMPFDRIIQAVLDEEVDAGLLIHEGQITYADYGLKCVLDLWDWWSE--QVKLPLPLGL 176
Query: 181 MAIRRSIPLYRAILIKKALIKAVEVALKH--QNLLSGMLLERSLIRVNKERLRTYLSLYA 238
AIRR + + +A+ +++ A+++ + + M R L ++ER + + +Y
Sbjct: 177 NAIRRDLSVEVQEEFLRAMRESIAFAIENPDEAIEYAMKYSRGL---DRERAKRFAMMYV 233
Query: 239 NETSTRLSEIQILAIDKLFELGYQHG 264
N+ + + E A+ KL+E+ G
Sbjct: 234 NDYTYNMPESVDAALKKLYEMAEAKG 259
>ref|NP_559258.1| (NC_003364) conserved hypothetical protein [Pyrobaculum aerophilum]
gb|AAL63440.1| (AE009818) conserved hypothetical protein [Pyrobaculum aerophilum]
Length = 267
Score = 119 bits (297), Expect = 5e-26
Identities = 86/260 (33%), Positives = 134/260 (51%), Gaps = 11/260 (4%)
Query: 1 MISVAHSPDADDIFMYYAIKFGWIDCPIKNKAFHNIALDIETLNQEALKNTYDVSAISFG 60
M+ +AHSPDADD +M+Y I G + P F DIETLN+ AL+ DV+AIS
Sbjct: 1 MLKIAHSPDADDAYMFYGIAVGAVKLPAP---FVEFLSDIETLNRLALEELLDVTAISAH 57
Query: 61 LYPKIANDYALLPTATSFGNGYGPKLVKKKGVKLKKDFRVALSGEHTTNALLFKIYYKHA 120
I + Y ++ S G+GYGP +V + V K VA+ G TT ALL K+ A
Sbjct: 58 ALAYICDKYFVMSVGASMGDGYGPVVVARSEVAEPK--YVAVPGRFTTAALLTKLALPRA 115
Query: 121 RITYMNFLDIEKAVLEEKVHAGVLIHESILDFHN-ELEVEKELWDVWKELIEVDLPLPLG 179
R + F I AV V AGVLIHE + + L+ +L + W++ E LP PLG
Sbjct: 116 RAVELPFDKILDAVAAGIVDAGVLIHEGQITYERYGLKKVLDLGEWWRQ--ETGLPTPLG 173
Query: 180 GMAIRRSIPLYRAILIKKALIKAVEVALKHQNLLSGMLLERSLIR-VNKERLRTYLSLYA 238
+R+++ A I +AL ++++ A H+ + + R ++ E ++++Y
Sbjct: 174 LDVVRKALDREMAERITEALRESIQYADSHRE--EALRYAQKFARGLSLEETARFVNMYV 231
Query: 239 NETSTRLSEIQILAIDKLFE 258
N+ + + E+ A+ +L E
Sbjct: 232 NKYTRDMGEVGRRAVRELLE 251
>ref|NP_147080.1| (NC_000854) hypothetical protein [Aeropyrum pernix]
pir||G72782 hypothetical protein APE0248 - Aeropyrum pernix (strain K1)
dbj|BAA79161.1| (AP000058) 287aa long hypothetical protein [Aeropyrum pernix]
Length = 287
Score = 116 bits (291), Expect = 2e-25
Identities = 85/270 (31%), Positives = 139/270 (51%), Gaps = 11/270 (4%)
Query: 1 MISVAHSPDADDIFMYYAIKFGWIDCPIKN-KAFHNIALDIETLNQEALKNTYDV--SAI 57
++++AH+PDADD FM+Y I G ++ I+ + ++ DIETLN+ ++ DV SA+
Sbjct: 9 ILTIAHTPDADDAFMFYGIVAGAVE--IRGFRGVRHVIEDIETLNRWLVEEGRDVDASAV 66
Query: 58 SFGLYPKIANDYALLPTATSFGNGYGPKLVKKKGVKLKKDFRVALSGEHTTNALLFKIYY 117
S Y I + Y LL T S G GYGP +V K + R+A+ G +TT L+ I
Sbjct: 67 SAHAYAYIVDRYFLLRTGASMGEGYGPVVVSKSESVRLEGSRIAVPGRYTTAGLILTIAL 126
Query: 118 KHARIT--YMNFLDIEKAVLEEKVHAGVLIHESILDFHNE-LEVEKELWDVWKELIEVDL 174
+ R T Y F +I V + +V AG+LIHE + + L V +LWD W + L
Sbjct: 127 R-GRFTPVYARFDEIPAMVEDGRVDAGLLIHEEQIAYSRRGLTVVLDLWDWWAR-VTGGL 184
Query: 175 PLPLGGMAIRRSIPLYRAILIKKALIKAVEVALKHQNLLSGMLLERSLIRVNKERLRTYL 234
P+PLG R + A + AL ++E A +H + + S ++ ++E + ++
Sbjct: 185 PMPLGVDVFSRRLGRGAAEAFRDALRLSIEYAYQHFDEALDYAMRYSRVK-DRELVARFI 243
Query: 235 SLYANETSTRLSEIQILAIDKLFELGYQHG 264
+Y NE + + + + A L+ L + G
Sbjct: 244 KMYVNERTMDMGDDGVEAHRTLYRLARESG 273
>ref|NP_393652.1| (NC_002578) conserved hypothetical protein [Thermoplasma
acidophilum]
emb|CAC11320.1| (AL445063) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 271
Score = 110 bits (274), Expect = 2e-23
Identities = 75/265 (28%), Positives = 138/265 (51%), Gaps = 8/265 (3%)
Query: 2 ISVAHSPDADDIFMYYAIKFGWIDCPIKNKAFHNIALDIETLNQEALKNTYDVSAISFGL 61
I+VAH+PD DD FM+YA+ G I ++ + + DIETLN+E+ + Y+V+A+S
Sbjct: 3 ITVAHTPDPDDAFMFYAMFQGKIKTRME---YDQVIKDIETLNRESKEARYEVTALSANG 59
Query: 62 YPKIANDYALLPTATSFGNGYGPKLVKKKGVKLKKDFRVALSGEHTTNALLFKIYYKHAR 121
Y ++++ Y L + SFG YGP +V V L R+ + G T++ LL++++ A+
Sbjct: 60 YVQVSDKYMLTRSGASFGISYGPMVVAAHDVDLSSS-RMGVPGYMTSSYLLYRMFGPEAK 118
Query: 122 -ITYMNFLDIEKAVLEEKVHAGVLIHESILDFHNE-LEVEKELWDVWKELIEVDLPLPLG 179
+ F I A+L ++ AG+LIH+ L + L+ ++++ WK +LP+PLG
Sbjct: 119 EYIEIRFDKIPDAILNGEIDAGILIHDEQLTYEKHGLKKVFDIYEAWKNYAG-NLPVPLG 177
Query: 180 GMAIRRSIPLYRAILIKKALIKAVEVALKHQNLLSGMLLERSLIRVNKERLRTYLSLYAN 239
AIR+ +P +++ A+ H++ ++ + + E + ++ +Y N
Sbjct: 178 FNAIRKDLPKDVIDAFLDDFERSIRYAMAHEDEAVKYAMQYARY-TDLEMEKRFVRMYVN 236
Query: 240 ETSTRLSEIQILAIDKLFELGYQHG 264
E S E A++ + + G
Sbjct: 237 ELSINFGETGRKALELYYGRAAEKG 261
>dbj|BAB59426.1| (AP000991) hypothetical protein [Thermoplasma volcanium]
Length = 277
Score = 106 bits (265), Expect = 3e-22
Identities = 74/243 (30%), Positives = 127/243 (51%), Gaps = 8/243 (3%)
Query: 2 ISVAHSPDADDIFMYYAIKFGWIDCPIKNKAFHNIALDIETLNQEALKNTYDVSAISFGL 61
I VAH+PD DD FM+Y + G I + + + DIETLN+E+ + Y+V+AIS
Sbjct: 9 IMVAHTPDPDDAFMFYGMFEGKIRT---SNQYEQVIKDIETLNKESKEGKYEVTAISANG 65
Query: 62 YPKIANDYALLPTATSFGNGYGPKLVKKKGVKLKKDFRVALSGEHTTNALLFKIYYKHAR 121
Y ++ + Y L + SFG YGP +V + + L K R+ + G T++ LL++++ A+
Sbjct: 66 YVQVRDLYKLTRSGASFGISYGPIVVARNEIDLSKS-RMGVPGFMTSSYLLYRMFGPEAK 124
Query: 122 -ITYMNFLDIEKAVLEEKVHAGVLIHESILDFHNE-LEVEKELWDVWKELIEVDLPLPLG 179
+ F +I A+L KV AG+LIH+ L F L+ +++ WK +LP+PLG
Sbjct: 125 EYVEIKFDEIPDAILTGKVDAGILIHDEQLTFQKRGLKEVFDIYSAWKSYAG-NLPIPLG 183
Query: 180 GMAIRRSIPLYRAILIKKALIKAVEVALKHQNLLSGMLLERSLIRVNKERLRTYLSLYAN 239
AIR+ + +++ A+ H+ ++ + + + R ++ +Y N
Sbjct: 184 FNAIRKDLDEDTVNKFLYDFERSIRYAMAHEEEAVKYAMKYARY-TDLDLERRFVRMYVN 242
Query: 240 ETS 242
E S
Sbjct: 243 ELS 245
>ref|NP_110800.1| (NC_002689) Predicted solute-binding protein [Thermoplasma
volcanium]
Length = 271
Score = 106 bits (265), Expect = 3e-22
Identities = 74/243 (30%), Positives = 127/243 (51%), Gaps = 8/243 (3%)
Query: 2 ISVAHSPDADDIFMYYAIKFGWIDCPIKNKAFHNIALDIETLNQEALKNTYDVSAISFGL 61
I VAH+PD DD FM+Y + G I + + + DIETLN+E+ + Y+V+AIS
Sbjct: 3 IMVAHTPDPDDAFMFYGMFEGKIRT---SNQYEQVIKDIETLNKESKEGKYEVTAISANG 59
Query: 62 YPKIANDYALLPTATSFGNGYGPKLVKKKGVKLKKDFRVALSGEHTTNALLFKIYYKHAR 121
Y ++ + Y L + SFG YGP +V + + L K R+ + G T++ LL++++ A+
Sbjct: 60 YVQVRDLYKLTRSGASFGISYGPIVVARNEIDLSKS-RMGVPGFMTSSYLLYRMFGPEAK 118
Query: 122 -ITYMNFLDIEKAVLEEKVHAGVLIHESILDFHNE-LEVEKELWDVWKELIEVDLPLPLG 179
+ F +I A+L KV AG+LIH+ L F L+ +++ WK +LP+PLG
Sbjct: 119 EYVEIKFDEIPDAILTGKVDAGILIHDEQLTFQKRGLKEVFDIYSAWKSYAG-NLPIPLG 177
Query: 180 GMAIRRSIPLYRAILIKKALIKAVEVALKHQNLLSGMLLERSLIRVNKERLRTYLSLYAN 239
AIR+ + +++ A+ H+ ++ + + + R ++ +Y N
Sbjct: 178 FNAIRKDLDEDTVNKFLYDFERSIRYAMAHEEEAVKYAMKYARY-TDLDLERRFVRMYVN 236
Query: 240 ETS 242
E S
Sbjct: 237 ELS 239
>ref|NP_296910.1| (NC_002620) conserved hypothetical protein [Chlamydia muridarum]
pir||B81691 conserved hypothetical protein TC0533 [imported] - Chlamydia
muridarum (strain Nigg)
gb|AAF39374.1| (AE002322) conserved hypothetical protein [Chlamydia muridarum]
Length = 256
Score = 100 bits (250), Expect = 1e-20
Identities = 76/255 (29%), Positives = 127/255 (49%), Gaps = 8/255 (3%)
Query: 3 SVAHSPDADDIFMYYAIKFGWIDCPIKNKAFHNIALDIETLNQEALKNTYDVSAISFGLY 62
SVA SP +DIF++ + P + + DI +LN AL+ + + IS LY
Sbjct: 4 SVAFSPCPNDIFLFRSFLEKHEGAPSLRQI---MIADIASLNHLALETRFSLIKISASLY 60
Query: 63 PKIANDYALLPTATSFGNGYGPKLVKKKGVKLKKDFRVALSGEHTTNALLFKIYYKHARI 122
P+IA+ Y +L T+ G+ GP ++ K KL + +A GE TT L +++Y +
Sbjct: 61 PRIADAYHVLDVGTTLGHKIGPLVLSKHPDKLLRT--LATPGETTTAHALCRLFYPQTEL 118
Query: 123 TYMNFLDIEKAVLEEKVHAGVLIHESILDFHNELEVEKELWDVWKELIEVDLPLPLGGMA 182
M + +I A+L +V G +IHE F EL + +L +W+E + LPLPLG +A
Sbjct: 119 IPMKYHEIIPAILANQVDGGAVIHEERFSFPKELCLVDDLGQLWEE--KWHLPLPLGCIA 176
Query: 183 IRRSIPLYRAILIKKALIKAVEVALKHQNLLSGMLLERSLIRVNKERLRTYLSLYANETS 242
I + I + + AL++++ +L +L E S + N ++ ++ Y E +
Sbjct: 177 ISKEISADDSYRLNYALLRSLRRSLTESSLAIQKASEYSRDK-NAATIQRFIDTYVTEET 235
Query: 243 TRLSEIQILAIDKLF 257
LS I A+ L+
Sbjct: 236 FCLSPIGREALSTLW 250
>ref|NP_294735.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||C75447 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF10587.1|AE001953_1 (AE001953) conserved hypothetical protein [Deinococcus radiodurans]
Length = 301
Score = 95.1 bits (235), Expect = 8e-19
Identities = 73/270 (27%), Positives = 130/270 (48%), Gaps = 12/270 (4%)
Query: 1 MISVAHSPDADDIFMYYAIKFGWIDCPIKNKAFHNIALDIETLNQEALKNTYDVSAISFG 60
++ + +S +D F+++A+ G + P+ + D++TLN A+ ++ IS+
Sbjct: 14 VLHLGYSFCPNDTFIFHALHAGLVQGPLP---VQEVLEDVQTLNDWAVAGRLPMTKISYR 70
Query: 61 LYPKIANDYALLPTATSFGNGYGPKLVKKKGVKLKKDFRVALSGEHTTNALLFKIYYKHA 120
Y + + Y L + + G G GP +V + GVK RVA G TT LL ++ Y
Sbjct: 71 AYFDVMDRYVALRSGGALGRGVGPLIVTRPGVKDLTALRVASPGALTTAELLLRLAYPGV 130
Query: 121 RITYMNFLDIEKAVLEEK-----VHAGVLIHESILDFHNELEVEKEL-WDVWKELIEVDL 174
+ M + ++ AV + V AG++IHES + E ++K L W E E L
Sbjct: 131 EVVRMRYDEVMPAVQRGEYDGTAVDAGLIIHESRFTY-PEYGLDKLLDLGAWWE-GETGL 188
Query: 175 PLPLGGMAIRRSIPLYRAILIKKALIKAVEVALKHQNLLSGMLLERSLIRVNKERLRTYL 234
PLPLG + +RR +P ++ A+ +++E A H + E +L ++ E ++ ++
Sbjct: 189 PLPLGAILVRRDLPAQTQRELQDAVRRSLEYAYAHPAAARDYIREHAL-EMSDEVMQAHI 247
Query: 235 SLYANETSTRLSEIQILAIDKLFELGYQHG 264
LY N S + E A+ +L + G
Sbjct: 248 DLYVNSLSLDVGEEGERAVRELLRRAVEVG 277
>ref|NP_219767.1| (NC_000117) hypothetical protein [Chlamydia trachomatis]
pir||C71536 hypothetical protein CT262 - Chlamydia trachomatis (serotype D,
strain UW3/Cx)
gb|AAC67855.1| (AE001299) hypothetical protein [Chlamydia trachomatis]
Length = 256
Score = 94.0 bits (232), Expect = 2e-18
Identities = 73/259 (28%), Positives = 126/259 (48%), Gaps = 16/259 (6%)
Query: 3 SVAHSPDADDIFMYYAIKFGWIDCPIKNKAFHNIA----LDIETLNQEALKNTYDVSAIS 58
S A SP +DIF++ + K+K F ++ DI +LN AL+ + + IS
Sbjct: 4 SAAFSPCPNDIFLFRSFLE-------KHKGFPSLRQIMIADISSLNYYALETRFPLIKIS 56
Query: 59 FGLYPKIANDYALLPTATSFGNGYGPKLVKKKGVKLKKDFRVALSGEHTTNALLFKIYYK 118
LYP+IA+ Y +L T+ G GP ++ ++ K +A GE TT L +++Y
Sbjct: 57 ASLYPQIADSYDVLNVGTTLGYKIGPLILSRQLDSPLKS--LATPGETTTAHALCRLFYP 114
Query: 119 HARITYMNFLDIEKAVLEEKVHAGVLIHESILDFHNELEVEKELWDVWKELIEVDLPLPL 178
A + M + +I A+L +V G +IHE F +L + ++L +W++ LPLPL
Sbjct: 115 RAELVPMKYHEIIPAILSNRVDGGAVIHEERFSFPKDLCIVEDLGQLWEKTWH--LPLPL 172
Query: 179 GGMAIRRSIPLYRAILIKKALIKAVEVALKHQNLLSGMLLERSLIRVNKERLRTYLSLYA 238
G + I + + + L+ AL ++++ +L L E S + N ++ ++ Y
Sbjct: 173 GCIVISKKVSDDDSYLLNHALQESLKKSLTDSALAIQKASEYSRDK-NPTTIQHFIDTYV 231
Query: 239 NETSTRLSEIQILAIDKLF 257
E + LS I A L+
Sbjct: 232 TEETFNLSSIGRQAFSTLW 250
>ref|NP_224611.1| (NC_000922) CT262 hypothetical protein [Chlamydophila pneumoniae
CWL029]
ref|NP_300468.1| (NC_002491) CT262 hypothetical protein [Chlamydophila pneumoniae
J138]
ref|NP_444892.1| (NC_002179) conserved hypothetical protein [Chlamydophila
pneumoniae AR39]
pir||B72083 conserved hypothetical protein CP0343 [imported] - Chlamydophila
pneumoniae (strains CWL029 and AR39)
gb|AAD18555.1| (AE001624) CT262 hypothetical protein [Chlamydophila pneumoniae
CWL029]
gb|AAF38196.1| (AE002196) conserved hypothetical protein [Chlamydophila pneumoniae
AR39]
dbj|BAA98619.1| (AP002546) CT262 hypothetical protein [Chlamydophila pneumoniae
J138]
Length = 259
Score = 92.0 bits (227), Expect = 7e-18
Identities = 71/258 (27%), Positives = 126/258 (48%), Gaps = 8/258 (3%)
Query: 1 MISVAHSPDADDIFMYYAIKFGWIDCPIKNKAFHNIALDIETLNQEALKNTYDVSAISFG 60
+++ A SP +DIF++ + P+ N+ DIETLN AL+ + +S
Sbjct: 2 ILTAAFSPCPNDIFLFRSFLKDPQFRPLLNQV---TIADIETLNTLALQRRLSLMKMSAA 58
Query: 61 LYPKIANDYALLPTATSFGNGYGPKLVKKKGVKLKKDFRVALSGEHTTNALLFKIYYKHA 120
L+P +++ Y L+ + G GP +V + D +A GE TT L K+YY A
Sbjct: 59 LFPLVSDYYNLMDVGNTLGYNSGP-IVLSLDPECSLD-TLATPGEMTTAHALCKLYYPKA 116
Query: 121 RITYMNFLDIEKAVLEEKVHAGVLIHESILDFHNELEVEKELWDVWKELIEVDLPLPLGG 180
++ M + I A+L+ KV G LIHE + +L + + ++W+ + PLPLG
Sbjct: 117 KLIPMPYDKILSAILQGKVDGGALIHEERFSYDLQLTLRADFGELWRR--KTIFPLPLGC 174
Query: 181 MAIRRSIPLYRAILIKKALIKAVEVALKHQNLLSGMLLERSLIRVNKERLRTYLSLYANE 240
+AI + +P+ + AL K++ +LK +E S + N + ++ Y N+
Sbjct: 175 LAIAKYVPMATVDALTAALRKSLICSLKDPITAGAKAVEYSKNK-NVTVIHRFIGTYINK 233
Query: 241 TSTRLSEIQILAIDKLFE 258
+ +LS+ A+ L++
Sbjct: 234 ETFQLSKTGKKALHMLWK 251
>ref|NP_628497.1| (NC_003888) conserved hypothetical protein [Streptomyces coelicolor
A3(2)]
emb|CAB93400.1| (AL357524) conserved hypothetical protein [Streptomyces coelicolor
A3(2)]
Length = 282
Score = 84.3 bits (207), Expect = 1e-15
Identities = 72/276 (26%), Positives = 125/276 (45%), Gaps = 15/276 (5%)
Query: 2 ISVAHSPDADDIFMYYAIKFGWID-CPIKNKAFHNIALDIETLNQEALKNTYDVSAISFG 60
+ +A+SP +D F++ A+ G + P + F DI+ N A + DV +S+
Sbjct: 6 LQIAYSPCPNDTFVFDALAHGRVPGAPALDVTF----ADIDITNGMAERGELDVLKVSYA 61
Query: 61 LYPKIANDYALLPTATSFGNGYGPKLVKKKGVKLKKDFRVALSGEHTTNALLFKIYYKH- 119
+ P + +D+ALLP + G G GP ++ ++ + VA+ E +T LLF+++
Sbjct: 62 VLPYVLDDWALLPCGGALGRGCGPLVLTREADADLRGRTVAVPSETSTAYLLFRLWAADT 121
Query: 120 -----ARITYMNFLDIEKAVLEEKVHAGVLIHESILDFHN-ELEVEKELWDVWKELIEVD 173
I M F +I AV + KV AG++IHE+ + N L ++ + W+
Sbjct: 122 VPGGVGEIVVMPFHEIMPAVRDGKVDAGLVIHEARFTYQNYGLHKLADMGEHWEH--TTG 179
Query: 174 LPLPLGGMAIRRSIPLYRAILIKKALIKAVEVALKHQNLLSGMLLERSLIRVNKERLRTY 233
LP+PLG + RRS+ + A+ +V A ++E + ++ +
Sbjct: 180 LPIPLGAIIARRSLGAPALTRLADAVRASVRAAWDDPEASRPYVMEHAQ-EMDPAVADQH 238
Query: 234 LSLYANETSTRLSEIQILAIDKLFELGYQHGFYASL 269
+ LY NE + L E AI L G +L
Sbjct: 239 IGLYVNEFTADLGEDGYAAIRGLLTRAAAEGLVPAL 274
>ref|NP_243555.1| (NC_002570) BH2689~unknown conserved protein in others [Bacillus
halodurans]
dbj|BAB06408.1| (AP001516) BH2689~unknown conserved protein in others [Bacillus
halodurans]
Length = 279
Score = 79.3 bits (194), Expect = 4e-14
Identities = 70/268 (26%), Positives = 126/268 (46%), Gaps = 23/268 (8%)
Query: 2 ISVAHSPDADDIFMYYAIKFGWIDCPIKNKA-FHNIALDIETLNQEALKNTY-DVSAISF 59
+++A SP +D F+++A W+ I+ H DI+ N A + +V IS+
Sbjct: 1 MNIAFSPCPNDTFVFHA----WVHGHIQGAPPLHVTYADIDITNHLAAEGKGPEVMKISY 56
Query: 60 GLYPKIANDYALLPTATSFGNGYGPKLVKK----KGVKLKKDFRVALSGEHTTNALLFKI 115
P + DYAL+P + G G GP L+ K + +A+ E +T LLF++
Sbjct: 57 AALPYVLEDYALIPCGGALGRGCGPLLLTKGKTGDDPNILNGKTIAVPSERSTAYLLFRL 116
Query: 116 YY------KHARITYMNFLDIEKAVLEEKVHAGVLIHESILDFH-NELEVEKELWDVWKE 168
+ K +I M F +I AV V AG++IHE+ + L + ++L W+E
Sbjct: 117 WVAQQLDGKVGKIVVMPFHEIMPAVRNGTVDAGLVIHEARFTYQAYGLTMLQDLGSWWEE 176
Query: 169 LIEVDLPLPLGGMAIRRSIPLYRAILIKKALIKAVEVALKHQNLLSGMLLERSLIRVNKE 228
+ LP+PLG + +R + A I+ + ++V+ A H + ++ + + +E
Sbjct: 177 --DTGLPIPLGAIIAKRGLD---ASAIQSWIKQSVQYAWAHPDASKEYVMSHAQ-EMAEE 230
Query: 229 RLRTYLSLYANETSTRLSEIQILAIDKL 256
+ ++ LY N + L E A++ L
Sbjct: 231 VAKAHIDLYVNTFTEDLGEDGYRAVESL 258
>ref|NP_378121.1| (NC_003106) 288aa long conserved hypothetical protein [Sulfolobus
tokodaii]
dbj|BAB67230.1| (AP000989) 288aa long conserved hypothetical protein [Sulfolobus
tokodaii]
Length = 288
Score = 60.8 bits (146), Expect = 2e-08
Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 26/227 (11%)
Query: 1 MISVAHSPDADDIFMYYAIKFGWIDCPIKNKAFH---NIALDIETLNQEALKNTYDVSAI 57
M+++ P AD +Y I I+ IK + F+ I ++ N++ LK DV+
Sbjct: 1 MVTIKVGPLADSGDLYPFIPL--IEGIIKPEGFNLEFEIITTVQDTNEKVLKKEVDVAVP 58
Query: 58 SFGLYPKIANDYALL--PTATSFGNGYGPKLVKKKGVKLK--KDFRVALSGEHTTNALLF 113
S +YP I +DY +L A++ G ++ + ++ K R+ + G +TT L+
Sbjct: 59 SAAMYPYIQDDYYILGNAIASAIDGITGMPVISLTPLSIEDLKKSRIIVHGHNTTAFTLY 118
Query: 114 KIYYKHARITYMNFLDIEKAVLEEKVHAG------VLIHESILDFHNE---LEVEK--EL 162
K+ I N L I K VL+E G V +HE + + E ++V + +
Sbjct: 119 KLL-----IGKYNKLVIVKKVLDEIKALGKEGDALVAVHEIKMMYALEKLGIKVNRVTSM 173
Query: 163 WDVWKELIEVDLPLPLGGMAIRRSIPLYRAILIKKALIKAVEVALKH 209
WD+WK L ++P+PLG + I + + A+ K+ K+ + A KH
Sbjct: 174 WDLWKNLAG-NVPMPLGTVVINKDLGKDIALKFKEVYEKSKKYAEKH 219
>ref|NP_343609.1| (NC_002754) Conserved hypothetical protein [Sulfolobus
solfataricus]
gb|AAK42399.1| (AE006828) Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 288
Score = 55.5 bits (132), Expect = 7e-07
Identities = 53/218 (24%), Positives = 98/218 (44%), Gaps = 12/218 (5%)
Query: 2 ISVAHSPDADDIFMYYAIKFGWIDCPIKNKAFHNIALDIETLNQEALKNTYDVSAISFGL 61
I V D+ D++ + + G + N F I ++ +N+ LK DVS S +
Sbjct: 4 IRVGALADSGDLYPFIPLMEGKVKPEGFNLEFEVIPT-VQDINEAVLKKEVDVSVPSVAM 62
Query: 62 YPKIANDYALLPTATSFG----NGYGPKLVKKKGVKLKKDFRVALSGEHTTNALLFKIYY 117
YP I +DY +L A + G +K+ K R+ + G +TT L+++
Sbjct: 63 YPYIQDDYYILSNAVATAVDGITGMPILAIKEMSEDEIKRSRLIVHGPNTTAFTLYRLLI 122
Query: 118 -KHARITYMNFLDIEKAVLEEKVHAGVLIHESILDF---HNELEVEK--ELWDVWKELIE 171
K+ R+ + + E L ++ V +HE + + + V + +WD+WK I
Sbjct: 123 GKYGRLIIVRRVLDEIKALGKEGDVLVAVHEIKMMYALRKMGISVVRIGSMWDMWK-TIS 181
Query: 172 VDLPLPLGGMAIRRSIPLYRAILIKKALIKAVEVALKH 209
+ P+P+G + I + + A+ K+ K+ + A KH
Sbjct: 182 NNTPMPMGMVVISKEVGKDLALRFKETYEKSKKYAEKH 219
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.322 0.140 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,408,976
Number of Sequences: 1026957
Number of extensions: 6799644
Number of successful extensions: 15435
Number of sequences better than 1.0e-02: 18
Number of HSP's better than 0.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 15385
Number of HSP's gapped (non-prelim): 19
length of query: 287
length of database: 324,149,939
effective HSP length: 120
effective length of query: 167
effective length of database: 200,915,099
effective search space: 33552821533
effective search space used: 33552821533
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 97 (42.0 bits)