BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646113|ref|NP_208295.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(238 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208295.1| (NC_000915) conserved hypothetical protein... 481 e-135
ref|NP_224115.1| (NC_000921) putative [Helicobacter pylori ... 457 e-128
ref|NP_281682.1| (NC_002163) hypothetical protein Cj0495 [C... 125 4e-28
ref|NP_603679.1| (NC_003454) Methyltransferase [Fusobacteri... 80 2e-14
ref|NP_269505.1| (NC_002737) conserved hypothetical protein... 72 4e-12
ref|NP_345984.1| (NC_003028) conserved hypothetical protein... 71 9e-12
ref|NP_358984.1| (NC_003098) Conserved hypothetical protein... 70 1e-11
ref|NP_469553.1| (NC_003212) conserved hypothetical protein... 66 3e-10
ref|NP_621803.1| (NC_003869) SAM-dependent methyltransferas... 66 3e-10
ref|NP_603804.1| (NC_003454) Ribosomal RNA small subunit me... 65 5e-10
ref|NP_653982.1| (NC_003995) Ubie_methyltran, ubiE/COQ5 met... 64 1e-09
ref|NP_387915.1| (NC_000964) similar to hypothetical protei... 64 1e-09
ref|NP_463698.1| (NC_003210) conserved hypothetical protein... 64 1e-09
ref|NP_230310.1| (NC_002505) conserved hypothetical protein... 62 5e-09
ref|NP_268298.1| (NC_002662) HYPOTHETICAL PROTEIN [Lactococ... 60 3e-08
ref|NP_228500.1| (NC_000853) conserved hypothetical protein... 59 6e-08
ref|NP_607509.1| (NC_003485) conserved hypothetical protein... 58 8e-08
ref|NP_078139.1| (NC_002162) conserved hypothetical [Ureapl... 56 3e-07
ref|NP_240913.1| (NC_002570) BH0047~unknown conserved prote... 55 6e-07
emb|CAA10787.1| (AJ132803) hypothetical protein [Staphyloco... 54 1e-06
ref|NP_645259.1| (NC_003923) conserved hypothetical protein... 54 1e-06
sp|P31825|YFIC_ECOLI Hypothetical protein yfiC 54 2e-06
ref|NP_417070.1| (NC_000913) putative enzyme [Escherichia c... 54 2e-06
ref|NP_371011.1| (NC_002758) conserved hypothetical protein... 53 3e-06
ref|NP_457118.1| (NC_003198) conserved hypothetical protein... 52 4e-06
ref|NP_289133.1| (NC_002655) putative enzyme [Escherichia c... 52 5e-06
ref|NP_461577.1| (NC_003197) putative transferase [Salmonel... 51 9e-06
ref|NP_326303.1| (NC_002771) DNA METHYLASE [Mycoplasma pulm... 50 3e-05
ref|NP_213464.1| (NC_000918) hypothetical protein [Aquifex ... 49 4e-05
emb|CAD24416.1| (AJ431695) hypothetical protein [Paracoccus... 48 8e-05
emb|CAA50273.1| (X70925) y210 [Pediococcus acidilactici] 48 8e-05
emb|CAA41480.1| (X58627) hypothetical protein [Pseudoaltero... 47 1e-04
ref|NP_244777.1| (NC_002570) biotin synthesis BioC proein [... 47 2e-04
ref|NP_246778.1| (NC_002663) unknown [Pasteurella multocida... 46 3e-04
ref|NP_613349.1| (NC_003551) Predicted RNA methylase [Metha... 44 0.001
ref|NP_406226.1| (NC_003143) conserved hypothetical protein... 44 0.001
ref|NP_240003.1| (NC_002528) hemK protein [Buchnera sp. APS... 44 0.002
ref|NP_469629.1| (NC_003212) conserved hypothetical protein... 43 0.003
ref|NP_463787.1| (NC_003210) conserved hypothetical protein... 43 0.003
ref|NP_143569.1| (NC_000961) hypothetical protein [Pyrococc... 42 0.004
sp|P10835|MTC3_CHVN1 MODIFICATION METHYLASE CVIBIII (ADENIN... 42 0.004
ref|NP_387987.1| (NC_000964) alternate gene name: ybaA~simi... 42 0.006
ref|NP_530790.1| (NC_003304) ribosomal RNA small subunit me... 42 0.006
ref|NP_353117.1| (NC_003062) AGR_C_122p [Agrobacterium tume... 42 0.006
ref|NP_240990.1| (NC_002570) BH0124~unknown conserved prote... 42 0.006
ref|NP_616374.1| (NC_003552) HemK related protein [Methanos... 42 0.007
ref|NP_457609.1| (NC_003198) conserved hypothetical protein... 41 0.010
ref|NP_462134.1| (NC_003197) paral putative methyltransfera... 41 0.010
>ref|NP_208295.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||H64707 conserved hypothetical protein HP1504 - Helicobacter pylori
(strain 26695)
gb|AAD08540.1| (AE000648) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 238
Score = 481 bits (1238), Expect = e-135
Identities = 238/238 (100%), Positives = 238/238 (100%)
Query: 1 MDRKLLRLYQPLNAYSYNSDSLFLYDFSRPFIKNSGAILDIGSGCGILGLLCARDNPLAI 60
MDRKLLRLYQPLNAYSYNSDSLFLYDFSRPFIKNSGAILDIGSGCGILGLLCARDNPLAI
Sbjct: 1 MDRKLLRLYQPLNAYSYNSDSLFLYDFSRPFIKNSGAILDIGSGCGILGLLCARDNPLAI 60
Query: 61 VHLVEKDNKMAFCSQKNALKFPNAQVFEGDFLDFNPPILYDIIVCNPPFYALGSIKSKIK 120
VHLVEKDNKMAFCSQKNALKFPNAQVFEGDFLDFNPPILYDIIVCNPPFYALGSIKSKIK
Sbjct: 61 VHLVEKDNKMAFCSQKNALKFPNAQVFEGDFLDFNPPILYDIIVCNPPFYALGSIKSKIK 120
Query: 121 GHARHQSELDFASLVAKVKKCLKPKGYFIFCYEALSLCLVIEGLKSVKLTLETLRFVQSF 180
GHARHQSELDFASLVAKVKKCLKPKGYFIFCYEALSLCLVIEGLKSVKLTLETLRFVQSF
Sbjct: 121 GHARHQSELDFASLVAKVKKCLKPKGYFIFCYEALSLCLVIEGLKSVKLTLETLRFVQSF 180
Query: 181 KDKNAHLMLGAARNNSKSALKVLPPLITHHSKNQSDNTKEVLSIYQTCNTYSIKALLN 238
KDKNAHLMLGAARNNSKSALKVLPPLITHHSKNQSDNTKEVLSIYQTCNTYSIKALLN
Sbjct: 181 KDKNAHLMLGAARNNSKSALKVLPPLITHHSKNQSDNTKEVLSIYQTCNTYSIKALLN 238
>ref|NP_224115.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71813 hypothetical protein jhp1397 - Helicobacter pylori (strain J99)
gb|AAD06963.1| (AE001561) putative [Helicobacter pylori J99]
Length = 238
Score = 457 bits (1177), Expect = e-128
Identities = 226/238 (94%), Positives = 232/238 (96%)
Query: 1 MDRKLLRLYQPLNAYSYNSDSLFLYDFSRPFIKNSGAILDIGSGCGILGLLCARDNPLAI 60
MDRKLLRLYQPLNAYSYNSDSLFLYDFSRPFIKNSGAILDIGSGCG+LGLLCARDNPLA
Sbjct: 1 MDRKLLRLYQPLNAYSYNSDSLFLYDFSRPFIKNSGAILDIGSGCGVLGLLCARDNPLAS 60
Query: 61 VHLVEKDNKMAFCSQKNALKFPNAQVFEGDFLDFNPPILYDIIVCNPPFYALGSIKSKIK 120
VHLVEKD+KMAFCSQKNALKFPNAQVFE DFLDFNPPILYD IVCNPPFYALGSIKS+IK
Sbjct: 61 VHLVEKDSKMAFCSQKNALKFPNAQVFESDFLDFNPPILYDAIVCNPPFYALGSIKSQIK 120
Query: 121 GHARHQSELDFASLVAKVKKCLKPKGYFIFCYEALSLCLVIEGLKSVKLTLETLRFVQSF 180
GHARHQSELDFASLVAKVKKCLKPKGYFIFCYEALSLCLVIE LKSVKLTLETLRFVQSF
Sbjct: 121 GHARHQSELDFASLVAKVKKCLKPKGYFIFCYEALSLCLVIESLKSVKLTLETLRFVQSF 180
Query: 181 KDKNAHLMLGAARNNSKSALKVLPPLITHHSKNQSDNTKEVLSIYQTCNTYSIKALLN 238
KDKNAHLMLGAARNNSKSALKVLPPLITH+SKNQSDNTKEVL+IYQ CNTYSIKA L+
Sbjct: 181 KDKNAHLMLGAARNNSKSALKVLPPLITHNSKNQSDNTKEVLNIYQICNTYSIKAPLD 238
>ref|NP_281682.1| (NC_002163) hypothetical protein Cj0495 [Campylobacter jejuni]
pir||B81395 hypothetical protein Cj0495 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB75133.1| (AL139075) hypothetical protein Cj0495 [Campylobacter jejuni]
Length = 233
Score = 125 bits (314), Expect = 4e-28
Identities = 82/222 (36%), Positives = 119/222 (52%), Gaps = 8/222 (3%)
Query: 5 LLRLYQPLNAYSYNSDSLFLYDFS-RPFIKNSGAILDIGSGCGILGLLCARDNPLAIVHL 63
L+ L Q Y YNSDSL L DF + IK GA+ D+G+GCGI+G+L ++ + L
Sbjct: 4 LITLAQLSQGYRYNSDSLILADFILKQGIK--GAVFDVGAGCGIIGILLKKNIANLSLSL 61
Query: 64 VEKDNKMAFCSQKNALKFPNAQ--VFEGDFLDFNPPILYDIIVCNPPFYALGSIKSKI-- 119
++ + +KN LK Q +F DF F +D IVCNPPFY G+ KS+
Sbjct: 62 IDIQKENIELIEKN-LKSNKIQGDIFHDDFNQFQIIKKFDFIVCNPPFYRQGAYKSEDQH 120
Query: 120 KGHARHQSELDFASLVAKVKKCLKPKGYFIFCYEALSLCLVIEGLKSVKLTLETLRFVQS 179
K ++ Q L S +AK LKP G FCYEAL+L + LK +K+ + L FV +
Sbjct: 121 KAISKFQEFLPLHSFLAKTNSMLKPNGTLYFCYEALALDEICFILKDMKMKITKLCFVHT 180
Query: 180 FKDKNAHLMLGAARNNSKSALKVLPPLITHHSKNQSDNTKEV 221
+ K A L+L + SKS ++LPP + ++ S +E+
Sbjct: 181 HQSKKARLVLIQVKKGSKSPCEILPPFFVYENEILSKQMQEI 222
>ref|NP_603679.1| (NC_003454) Methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL94978.1| (AE010587) Methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 243
Score = 79.7 bits (195), Expect = 2e-14
Identities = 58/233 (24%), Positives = 111/233 (46%), Gaps = 13/233 (5%)
Query: 4 KLLRLYQPLNAYSYNSDSLFLYDFSRPFIKNSGAILDIGSGCGILGLLCARDNPLAIVHL 63
K L++ Q + ++++ DSL + +F KN ILD+G+G + L ++ I +
Sbjct: 14 KNLKIIQRSDYFNFSIDSLLISEFVN-IKKNIKKILDLGTGNAAIPLFLSKKTSAKIYGI 72
Query: 64 VEKDNKMAFCSQKNALKFPNAQVF-----EGDFLDFNPPILYDIIVCNPPFYALGSIKSK 118
++ + + N Q++ ++L + +DI++ NPPF+ + +
Sbjct: 73 EIQEISYNLALRNININNLNEQIYIIYDNMKNYLKYFDIGSFDIVISNPPFFKINENINF 132
Query: 119 IKGH-----ARHQSELDFASLVAKVKKCLKPKGYFIFCYEALSLCLVIEGLKSVKLTLET 173
+ ARH+ E++ L + +K +GYF + A L +I L+ +
Sbjct: 133 LNNLDQLSIARHEIEINLEELTKIASELVKDRGYFYLVHRADRLSEIINNLQKYNFEAKK 192
Query: 174 LRFVQSFKDKNAHLMLGAARNNSKSALKVLPPLITHHSKNQSDNTKEVLSIYQ 226
++F + + KNA ++L A N KS L +LPPLI +K + T EVL +++
Sbjct: 193 IKFCYTTEYKNAKIVLIEAIKNGKSGLTILPPLII--NKENGEYTDEVLRMFE 243
>ref|NP_269505.1| (NC_002737) conserved hypothetical protein [Streptococcus pyogenes]
[Streptococcus pyogenes M1 GAS]
gb|AAK34226.1| (AE006578) conserved hypothetical protein [Streptococcus pyogenes
M1 GAS]
Length = 258
Score = 72.4 bits (176), Expect = 4e-12
Identities = 60/229 (26%), Positives = 109/229 (47%), Gaps = 16/229 (6%)
Query: 8 LYQPLNAYSYNSDSLFLYDFSRPFIKNSGAILDIGSGCGILGLLCARDNPLAIVHLVEKD 67
+ Q + +SY+ DS+ L F P + + G I+D+ SG G +GL + AIV VE
Sbjct: 22 IIQNKDVFSYSIDSVLLSRF--PKMPSKGLIVDLCSGNGAVGLFASTRTKAAIVE-VELQ 78
Query: 68 NKMAFCSQK----NALKFPNAQVFEG--DFLDFNPPILYDIIVCNPPFY-ALGSIKSKIK 120
++A Q+ N L+ + + + L+ P D+++CNPP++ + S K +
Sbjct: 79 ERLADMGQRSIQLNQLEDQVTMICDDLKNLLNHVPRSGVDLMLCNPPYFKSHESSKKNVS 138
Query: 121 GH---ARHQSELDFASLVAKVKKCLKPKGYFIFCYEALSLCLVIEGLKSVKLTLETLRFV 177
H ARH+ + + + LK G + +I+ L++ L + ++FV
Sbjct: 139 EHYLLARHEVTTNLEEICQVARHALKSNGRLAMVHRPDRFLEIIDSLRANGLAPKRVQFV 198
Query: 178 QSFKDKNAH-LMLGAARNNSKSALKVLPPLITHHSKNQSDNTKEVLSIY 225
K+A+ L++ A ++ S + +LPPL+ H K + T + IY
Sbjct: 199 YPKLGKSANMLLIEAIKDGSIEGMTILPPLVVH--KENGEYTDHIFEIY 245
>ref|NP_345984.1| (NC_003028) conserved hypothetical protein [Streptococcus
pneumoniae TIGR4]
gb|AAK75624.1| (AE007448) conserved hypothetical protein [Streptococcus pneumoniae
TIGR4]
Length = 249
Score = 71.2 bits (173), Expect = 9e-12
Identities = 62/232 (26%), Positives = 107/232 (45%), Gaps = 18/232 (7%)
Query: 6 LRLYQPLNAYSYNSDSLFLYDFSRPFIKNSGAILDIGSGCGILGLLCARDNPLAIVHLVE 65
+++ Q +SY+ DS+ L F R G I+D +G G +GL + I+ VE
Sbjct: 21 IKIIQNREVFSYSVDSVLLSRFPR--FPKKGLIVDFCAGNGAVGLFASTRTQAQILS-VE 77
Query: 66 KDNKMAFCSQK----NALKFPNAQVFEGDFLDFNPPIL---YDIIVCNPPFYALGSIKSK 118
++A +++ N L+ QV D + I D+I+CNPP++ + +
Sbjct: 78 IQERLADMAERSVRLNGLE-EQMQVICDDLKNMPAHIQGSKVDMILCNPPYFKVNPYSNL 136
Query: 119 IKGH----ARHQSELDFASLVAKVKKCLKPKGYFIFCYEALSLCLVIEGLKSVKLTLETL 174
+ ARH+ + + + LK G + L +++ LK L + L
Sbjct: 137 NESEHYLLARHEITTNLEEICRSAQSILKSNGRLAMVHRPDRLLDILDTLKRHNLAPKRL 196
Query: 175 RFVQSFKDKNAHLML-GAARNNSKSALKVLPPLITHHSKNQSDNTKEVLSIY 225
+FV ++K A+++L A ++ S S KVLPPLI H+ + T E+ IY
Sbjct: 197 QFVYPKREKEANMLLIEAIKDGSTSGFKVLPPLIVHN--DDGSYTPEIEEIY 246
>ref|NP_358984.1| (NC_003098) Conserved hypothetical protein [Streptococcus
pneumoniae R6]
gb|AAL00195.1| (AE008508) Conserved hypothetical protein [Streptococcus pneumoniae
R6]
Length = 249
Score = 70.5 bits (171), Expect = 1e-11
Identities = 62/232 (26%), Positives = 107/232 (45%), Gaps = 18/232 (7%)
Query: 6 LRLYQPLNAYSYNSDSLFLYDFSRPFIKNSGAILDIGSGCGILGLLCARDNPLAIVHLVE 65
+++ Q +SY+ DS+ L F R G I+D +G G +GL + I+ VE
Sbjct: 21 IKIIQNREVFSYSVDSVLLSRFPR--FPKKGLIVDFCAGNGAVGLFASTRTQAQILS-VE 77
Query: 66 KDNKMAFCSQK----NALKFPNAQVFEGDFLDFNPPIL---YDIIVCNPPFYALGSIKSK 118
++A +++ N L+ QV D + I D+I+CNPP++ + +
Sbjct: 78 IQERLADMAERSVRLNGLE-EQMQVICDDLKNMPAHIQGSKVDMILCNPPYFKVDPYSNL 136
Query: 119 IKGH----ARHQSELDFASLVAKVKKCLKPKGYFIFCYEALSLCLVIEGLKSVKLTLETL 174
+ ARH+ + + + LK G + L +++ LK L + L
Sbjct: 137 NESEHYLLARHEITTNLEEICHSAQSILKSNGRLAMVHRPDRLLDILDTLKRHNLAPKRL 196
Query: 175 RFVQSFKDKNAHLML-GAARNNSKSALKVLPPLITHHSKNQSDNTKEVLSIY 225
+FV ++K A+++L A ++ S S KVLPPLI H+ + T E+ IY
Sbjct: 197 QFVYPKREKEANMLLIEAIKDGSTSGFKVLPPLIVHN--DDGSYTPEIEEIY 246
>ref|NP_469553.1| (NC_003212) conserved hypothetical protein [Listeria innocua]
emb|CAC95441.1| (AL596163) conserved hypothetical protein [Listeria innocua]
Length = 250
Score = 66.2 bits (160), Expect = 3e-10
Identities = 58/215 (26%), Positives = 101/215 (46%), Gaps = 14/215 (6%)
Query: 6 LRLYQPLNAYSYNSDSLFLYDFSRPFIKNSGAILDIGSGCGILGLLCARDNPLAIVHLVE 65
LR+ Q + +S++ D++ L FS I+ G I+D+ SG GI+ LL + IV VE
Sbjct: 20 LRIIQSPSVFSFSIDAVLLAKFSYLPIRK-GKIIDLCSGNGIIPLLLSTRTKAQIVG-VE 77
Query: 66 KDNKMAFCSQK----NALKFPNAQVFEGDF---LDFNPPILYDIIVCNPPFYALGSIKSK 118
++A +++ N L+ ++ E D D P DI+ CNPP++A S K
Sbjct: 78 IQERLADMAKRSVAYNQLE-DQIEIIEYDLNHITDLIPKERADIVTCNPPYFATPSTSLK 136
Query: 119 IKGH----ARHQSELDFASLVAKVKKCLKPKGYFIFCYEALSLCLVIEGLKSVKLTLETL 174
+ ARH+ + LK G F + L +I+ ++ +L + +
Sbjct: 137 NENEHYRIARHEIMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDLMRKYRLEPKRI 196
Query: 175 RFVQSFKDKNAHLMLGAARNNSKSALKVLPPLITH 209
+FV D+ A+ +L + K +K +PP+I +
Sbjct: 197 QFVHPRIDREANTVLVEGIKDGKPGVKYVPPVIVY 231
>ref|NP_621803.1| (NC_003869) SAM-dependent methyltransferases [Thermoanaerobacter
tengcongensis]
gb|AAM23407.1| (AE012984) SAM-dependent methyltransferases [Thermoanaerobacter
tengcongensis]
Length = 251
Score = 66.2 bits (160), Expect = 3e-10
Identities = 62/234 (26%), Positives = 106/234 (44%), Gaps = 19/234 (8%)
Query: 4 KLLRLYQPLNAYSYNSDSLFLYDFSRPFIKNSGAILDIGSGCGILGLLCARDNPLAIVHL 63
K + + Q + + + D++ L +F K I+D+G G GI+ +L A ++
Sbjct: 17 KNMAIIQHKDKFRFGIDAVLLANFVTA--KRGDRIVDLGCGNGIIPILIAAKTKDTFIYG 74
Query: 64 VEKDNKM--------AFCSQKNALKFPNAQVFEGD-FLDFNPPILYDIIVCNPPFYALGS 114
VE +M A S +N +K + V E + L + +D++ NPP+ L +
Sbjct: 75 VEIQEEMVDMAIRSVAINSLENRIKIIHGDVREVEKLLGYEK---FDVVTSNPPYMPLYT 131
Query: 115 ---IKSKIKGHARHQSELDFASLVAKVKKCLKPKGYFIFCYEALSLCLVIEGLKSVKLTL 171
K + + AR++ V K LK G F + L V+ L+ L
Sbjct: 132 GFEKKEEAENIARYEVYGGLEDFVKAAFKLLKFGGKFFMVHRPDRLVDVMYFLRKYNLEP 191
Query: 172 ETLRFVQSFKDKNAHLMLGAARNNSKSALKVLPPLITHHSKNQSDNTKEVLSIY 225
+ LRFV + D +L+L A+ ++ +L VLPPL + + + T+EV SIY
Sbjct: 192 KKLRFVHPYVDSKPNLLLLEAKKGAQPSLTVLPPLYVY--ERTGEYTEEVKSIY 243
>ref|NP_603804.1| (NC_003454) Ribosomal RNA small subunit methyltransferase C
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gb|AAL95103.1| (AE010599) Ribosomal RNA small subunit methyltransferase C
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
Length = 223
Score = 65.5 bits (158), Expect = 5e-10
Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 12/211 (5%)
Query: 1 MDRKLLRLYQPLNAYSYNSDSLFLYD-FSRPFIKNSGAILDIGSGCGILGLLCARDNPLA 59
+D K + Q + Y Y D++ L+ F K + +LDIG+G GIL +L + + L+
Sbjct: 11 LDEKF-EIIQKVGGYKYGEDTILLFKLFQASLNKKNIKLLDIGTGNGILPILLSDNEFLS 69
Query: 60 IVHLVEKDNKMAFCSQKN-ALKF----PNAQVFEGDFLDFNPPILYDIIVCNPPFYALGS 114
L+ D + + N ALK N Q D ++ +D+I+ NPP+
Sbjct: 70 --ELIGIDIQKENIERANKALKLNRIEKNIQFECMDVKEYKKSNYFDVIISNPPYMDDNG 127
Query: 115 IKSKIKGH---ARHQSELDFASLVAKVKKCLKPKGYFIFCYEALSLCLVIEGLKSVKLTL 171
K H +RH+ +L + L++ K+ LKP G F + L +I+ L ++
Sbjct: 128 KKINENEHKAISRHEIKLSLSELISNAKRLLKPIGLLYFIHRTHRLVEIIKTLDKNNFSV 187
Query: 172 ETLRFVQSFKDKNAHLMLGAARNNSKSALKV 202
+ + F+ S ++ + +M A K L++
Sbjct: 188 KKIIFIYSAQNNKSTMMFVEAIKGKKVKLEI 218
>ref|NP_653982.1| (NC_003995) Ubie_methyltran, ubiE/COQ5 methyltransferase family
[Bacillus anthracis A2012] [Bacillus anthracis str.
A2012]
Length = 246
Score = 64.3 bits (155), Expect = 1e-09
Identities = 57/229 (24%), Positives = 105/229 (44%), Gaps = 14/229 (6%)
Query: 6 LRLYQPLNAYSYNSDSLFLYDFSRPFIKNSGAILDIGSGCGILGLLCARDNPLAI--VHL 63
+++ Q + ++++ D++ L DF+ I+ G +LD+ +G ++ LL + I V +
Sbjct: 17 MKIIQSPSVFNFSLDAVLLADFAWVPIQK-GNLLDLCTGNAVVPLLLSTRTKGNITGVEI 75
Query: 64 VEKDNKMAFCS-QKNALKFPNAQVFEGDFLDFNPPI---LYDIIVCNPPFYALGSIKSKI 119
E+ M S Q N L+ + GD D + YD++ CNPP++ K
Sbjct: 76 QERLYDMGIRSVQYNKLE-ERIHLIHGDLKDMPEKLGRHQYDVVTCNPPYFQTPVTSEKN 134
Query: 120 KGH----ARHQSELDFASLVAKVKKCLKPKGYFIFCYEALSLCLVIEGLKSVKLTLETLR 175
ARH+ +V+ + +K G F + L ++ ++ K+ + +R
Sbjct: 135 MNEHLAIARHEIMCTLEDVVSASSQLVKQGGKVAFVHRPGRLLDIVTLMRKYKIEPKRVR 194
Query: 176 FVQSFKDKNAHLMLGAARNNSKSALKVLPPLITHHSKNQSDNTKEVLSI 224
FV K A+ +L + + LK+LPPL + N + TKE+ SI
Sbjct: 195 FVYPKAGKEANTLLIEGIKDGNADLKILPPLFVYEENN--EYTKEIRSI 241
>ref|NP_387915.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
sp|P37543|YABB_BACSU Hypothetical protein yabB
pir||S66064 conserved hypothetical protein yabB - Bacillus subtilis
dbj|BAA05270.1| (D26185) unknown [Bacillus subtilis]
emb|CAB11810.1| (Z99104) similar to hypothetical proteins [Bacillus subtilis]
Length = 247
Score = 64.3 bits (155), Expect = 1e-09
Identities = 54/228 (23%), Positives = 107/228 (46%), Gaps = 12/228 (5%)
Query: 6 LRLYQPLNAYSYNSDSLFLYDFSRPFIKNSGAILDIGSGCGILGLLCARDNPLAI--VHL 63
+++ Q ++++ D++ L F+ I+ G I+D+ +G GI+ LL + + I V +
Sbjct: 18 MKIIQSPTVFAFSLDAVLLSKFAYVPIQK-GKIVDLCTGNGIVPLLLSTRSKADILGVEI 76
Query: 64 VEKDNKMAFCSQKNALKFPNAQVFEGDFLDFNPPI---LYDIIVCNPPFYALGS-IKSKI 119
E+ + MA S + Q+ D + + YD++ CNPP++ + +
Sbjct: 77 QERLHDMAVRSVEYNKLDDQIQIIHDDLKNMPEKLGHNRYDVVTCNPPYFKTPKQTEQNM 136
Query: 120 KGH---ARHQSELDFASLVAKVKKCLKPKGYFIFCYEALSLCLVIEGLKSVKLTLETLRF 176
H ARH+ +++ K LK G + L + E +K+ ++ + ++F
Sbjct: 137 NEHLRIARHEIHCTLEDVISVSSKLLKQGGKAALVHRPGRLLEIFELMKAYQIEPKRVQF 196
Query: 177 VQSFKDKNAHLMLGAARNNSKSALKVLPPLITHHSKNQSDNTKEVLSI 224
V + K A+ +L + LK+LPPL + +N + TKE+ +I
Sbjct: 197 VYPKQGKEANTILVEGIKGGRPDLKILPPLFVYDEQN--EYTKEIRTI 242
>ref|NP_463698.1| (NC_003210) conserved hypothetical protein [Listeria monocytogenes
EGD-e]
emb|CAC98380.1| (AL591973) conserved hypothetical protein [Listeria monocytogenes]
Length = 250
Score = 63.9 bits (154), Expect = 1e-09
Identities = 57/215 (26%), Positives = 99/215 (45%), Gaps = 14/215 (6%)
Query: 6 LRLYQPLNAYSYNSDSLFLYDFSRPFIKNSGAILDIGSGCGILGLLCARDNPLAIVHLVE 65
LR+ Q + +S++ D++ L FS ++ G I+D+ SG GI+ LL + IV VE
Sbjct: 20 LRIIQSPSVFSFSIDAVLLAKFSYLPVRK-GKIIDLCSGNGIIPLLLSTRTEAQIVG-VE 77
Query: 66 KDNKMAFCSQK----NALKFPNAQVFEGDF---LDFNPPILYDIIVCNPPFYALGSIKSK 118
++A +++ N L+ ++ E D D P DI+ CNPP++A K
Sbjct: 78 IQERLADMAKRSISYNQLE-EQIEMIEYDLKNITDLIPKERADIVTCNPPYFATPDTSLK 136
Query: 119 IKGH----ARHQSELDFASLVAKVKKCLKPKGYFIFCYEALSLCLVIEGLKSVKLTLETL 174
ARH+ + LK G F + L +I+ ++ +L + +
Sbjct: 137 NTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPKRI 196
Query: 175 RFVQSFKDKNAHLMLGAARNNSKSALKVLPPLITH 209
+FV DK A+ +L + K +K +PP+I +
Sbjct: 197 QFVHPRIDKEANTVLVEGIKDGKPGVKYVPPVIVY 231
>ref|NP_230310.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||G82295 conserved hypothetical protein VC0661 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF93827.1| (AE004152) conserved hypothetical protein [Vibrio cholerae]
Length = 240
Score = 62.0 bits (149), Expect = 5e-09
Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 38 ILDIGSGCGILGLLCARDNPLAIVHLVEKDNKMAFCSQKNALKFPNAQVFE---GDFLDF 94
ILDIG G G+L L+CA+ P A + ++ + ++ N + P A+ E D L +
Sbjct: 46 ILDIGCGTGLLSLMCAQRFPHAHITALDIEQTAYLAAEHNRQQSPWAERIECQHADILHW 105
Query: 95 NPPILYDIIVCNPPFYALG-SIKSKIKGHARHQSELDFASLVAKVKKCLKPKGYFIF 150
P + I+CNPP++ G + + +++ ARH L +L+ ++ + L+P G F
Sbjct: 106 QPSKRFAAIICNPPYFNSGETAQHQVRATARHTISLQHQALIERLPQLLEPDGVASF 162
>ref|NP_268298.1| (NC_002662) HYPOTHETICAL PROTEIN [Lactococcus lactis subsp. lactis]
gb|AAK06239.1|AE006442_6 (AE006442) HYPOTHETICAL PROTEIN [Lactococcus lactis subsp. lactis]
Length = 250
Score = 59.7 bits (143), Expect = 3e-08
Identities = 52/231 (22%), Positives = 104/231 (44%), Gaps = 15/231 (6%)
Query: 6 LRLYQPLNAYSYNSDSLFLYDFSRPFIKNSGAILDIGSGCGILGLLCARDNPLAIVHLVE 65
+++ Q +S++ D++ L F R + G I+D+ +G G +GL + I+ L
Sbjct: 20 VKIIQSREVFSFSIDAILLARFPR--LPKRGKIVDLCAGNGAVGLFASSKTNAQIIELEI 77
Query: 66 KDNKMAFCSQKNALK--FPNAQVFEGDF---LDFNPPILYDIIVCNPPFYALGSIKSKIK 120
++ ++ L V + LD D+I CNPP++ + S +S +
Sbjct: 78 QERLADMATRSIELNGLTDRMSVINDNLNRALDHLHTSSADLIFCNPPYFKVDSDESHLN 137
Query: 121 GH-----ARHQSELDFASLVAKVKKCLKPKGYFIFCYEALSLCLVIEGLKSVKLTLETLR 175
ARH+ + + + KK LK G+ + +++ +++ L + ++
Sbjct: 138 ESKHYTLARHELTTNLDEIFSVSKKLLKTNGHIAMVHRPERFLEIVDKMRANNLQPKWIQ 197
Query: 176 FVQSFKDKNAHLMLGAARNNSKSALKV-LPPLITHHSKNQSDNTKEVLSIY 225
FV ++ A+++L A + K ++ LPPLI H+ + T E+ IY
Sbjct: 198 FVYPKANQPANILLIDAIKDGKEGGEIFLPPLIVHN--DDGTYTDEIDEIY 246
>ref|NP_228500.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
pir||A72345 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD35773.1|AE001741_6 (AE001741) conserved hypothetical protein [Thermotoga maritima]
Length = 216
Score = 58.5 bits (140), Expect = 6e-08
Identities = 52/195 (26%), Positives = 88/195 (44%), Gaps = 14/195 (7%)
Query: 21 SLFLYDFSRPFIKNSGAILDIGSGCGILGLLCARDNPLAIVHLVEKDNKM--------AF 72
S L ++RP KN ++L++GSG G + A+ + +V VEK+ ++ +
Sbjct: 26 SSLLVWYTRPS-KNVRSVLELGSGVGTVSFALAKLYNVKVVG-VEKEKELYEKALEGISL 83
Query: 73 CSQKNALKFPNAQVFEGDFLDFNPPILYDIIVCNPPFYALGSIKSKIKGHARHQSELDFA 132
+ + F N+ V E F PP +D++V NPP + ++++ R D
Sbjct: 84 NKLEERVSFVNSSVEELSF----PPESFDMVVSNPPHHTKVKSPNRLRASTRSIERRDIE 139
Query: 133 SLVAKVKKCLKPKGYFIFCYEALSLCLVIEGLKSVKLTLETLRFVQSFKDKNAHLMLGAA 192
V + LK G ++ +L +E S +L + + FV +K A L+L
Sbjct: 140 GFVQATFRFLKNGGTAVYVLSPENLMEWLEMFVSFRLEPKRMCFVHGKIEKAATLVLLRL 199
Query: 193 RNNSKSALKVLPPLI 207
R N K L V PP+I
Sbjct: 200 RKNGKRGLIVDPPVI 214
>ref|NP_607509.1| (NC_003485) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
gb|AAL98008.1| (AE010061) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
Length = 208
Score = 58.2 bits (139), Expect = 8e-08
Identities = 49/198 (24%), Positives = 91/198 (45%), Gaps = 14/198 (7%)
Query: 39 LDIGSGCGILGLLCARDNPLAIVHLVEKDNKMAFCSQK----NALKFPNAQVFEG--DFL 92
+D+ SG G +GL + IV VE ++A Q+ N L+ + + + L
Sbjct: 1 MDLCSGNGAVGLFASTRTKATIVE-VELQERLADMGQRSIQLNQLEDQVTMICDDLKNLL 59
Query: 93 DFNPPILYDIIVCNPPFY-ALGSIKSKIKGH---ARHQSELDFASLVAKVKKCLKPKGYF 148
+ P D+++CNPP++ + S K + H ARH+ + + + LK G
Sbjct: 60 NHVPRSGVDLMLCNPPYFKSHESSKKNVSEHYLLARHEVTTNLEEICQVARHALKSNGRL 119
Query: 149 IFCYEALSLCLVIEGLKSVKLTLETLRFVQSFKDKNAHLML-GAARNNSKSALKVLPPLI 207
+ +I+ L++ L + ++FV K+A+++L A ++ S + +LPPL+
Sbjct: 120 AMVHRPDRFLEIIDSLRANGLAPKRVQFVYPKLGKSANMLLIEAIKDGSIEGMTILPPLV 179
Query: 208 THHSKNQSDNTKEVLSIY 225
H K + T + IY
Sbjct: 180 VH--KENGEYTDHIFEIY 195
>ref|NP_078139.1| (NC_002162) conserved hypothetical [Ureaplasma urealyticum]
pir||H82906 conserved hypothetical UU305 [imported] - Ureaplasma urealyticum
gb|AAF30714.1|AE002128_2 (AE002128) conserved hypothetical [Ureaplasma urealyticum]
Length = 255
Score = 56.2 bits (134), Expect = 3e-07
Identities = 54/235 (22%), Positives = 100/235 (41%), Gaps = 15/235 (6%)
Query: 6 LRLYQPLNAYSYNSDSLFLYDFSRPFIKNSGAILDIGSGCGILGLLCA---RDNPLAIVH 62
L +YQ ++Y+ D++ L +F K IL+IG+ L + A D + +
Sbjct: 16 LFIYQDKKMFNYSIDTILLANFISLSSKTK-KILEIGTNNAALSIFLALRKEDIKIDAIE 74
Query: 63 LVEKDNKMAFCSQKNALKFPNAQVFEGDF------LDFNPPILYDIIVCNPPFY----AL 112
+ + +A + + DF D + YD I+CNPPFY +
Sbjct: 75 IQIEAINLALLNVSQNHFEKQINIIHADFNQYWKDFDKSENNKYDAIICNPPFYKQDKII 134
Query: 113 GSIKSKIKGHARHQSELDFASLVAKVKKCLKPKGYFIFCYEALSLCLVIEGLKSVKLTLE 172
S K+ +K A ++ L+F ++ K +K KG L ++E ++ + +
Sbjct: 135 PSTKNPLKTLALYEITLNFEQIMQGCAKIIKQKGNLAMVIPTTRLVDLLEIMRKYQFEPK 194
Query: 173 TLRFVQSFKDKNAHLMLGAARNNSKSALKVLPPLITHHSKNQSDN-TKEVLSIYQ 226
++ + + ++L+L AR S P L H+ Q+ T+EVL+ Y+
Sbjct: 195 RIKMIYPRIYEQSNLVLIEARYKSGWGTHFEPNLYLHYEDKQNHQYTEEVLNWYK 249
>ref|NP_240913.1| (NC_002570) BH0047~unknown conserved protein [Bacillus halodurans]
dbj|BAB03766.1| (AP001507) BH0047~unknown conserved protein [Bacillus halodurans]
Length = 246
Score = 55.1 bits (131), Expect = 6e-07
Identities = 54/217 (24%), Positives = 103/217 (46%), Gaps = 20/217 (9%)
Query: 7 RLYQPLNAYSYNSDSLFLYDFSRPFIKNSGAILDIGSGCGILGLLCARDNPLAIV--HLV 64
++ Q N ++++ D++ L F I+ G ILD+ +G GI+ LL + +V +
Sbjct: 19 QVIQSPNVFAFSMDAVLLARFVYLPIQK-GDILDLCTGNGIVPLLLTERSKARMVGVEIQ 77
Query: 65 EKDNKMAFC-SQKNALK----FPNAQVFEGDFLDFNPPI-LYDIIVCNPPFYALGSIKSK 118
E+ +MA SQ N L+ F N + + L N P+ +D++ CNPP++A ++
Sbjct: 78 ERLFEMAIRNSQLNDLEQQLTFMNLDLKD---LPKNMPMHSFDVVTCNPPYFA--NLNED 132
Query: 119 IKGH------ARHQSELDFASLVAKVKKCLKPKGYFIFCYEALSLCLVIEGLKSVKLTLE 172
+ ARH+ ++ + +K +G + + +IEG+K ++ +
Sbjct: 133 LLNDNPYLAIARHEIHCSLDDVLRVSSQMVKNRGKVAIVHRPERITELIEGMKRYRIEPK 192
Query: 173 TLRFVQSFKDKNAHLMLGAARNNSKSALKVLPPLITH 209
L+F+ A+++L S +KVLPPL +
Sbjct: 193 RLQFIHPKAGAEANIVLIEGMLGGNSGVKVLPPLTVY 229
>emb|CAA10787.1| (AJ132803) hypothetical protein [Staphylococcus aureus]
Length = 241
Score = 54.3 bits (129), Expect = 1e-06
Identities = 51/220 (23%), Positives = 95/220 (43%), Gaps = 15/220 (6%)
Query: 13 NAYSYNSDSLFLYDFSRPFIKNSGAILDIGSGCGILGLLCARDNPLAIVHLVEKDNKMAF 72
+ +S+++D+L L F++P K+ +LD+ SG G++ LL +P I + + K
Sbjct: 23 DVFSFSTDALLLGHFTKPRTKD--IVLDLCSGNGVIPLLLFAKHPRHIEGV--EIQKTLV 78
Query: 73 CSQKNALKFPNAQVF-EGDFLDFN------PPILYDIIVCNPPFYALGSIKSKIK-GH-- 122
+ +F + + +D P Y ++ CNPP++ K H
Sbjct: 79 DMARRTFQFNDVDEYLTMHHMDLKNVTKVFKPSQYTLVTCNPPYFKENQQHQHQKEAHKI 138
Query: 123 ARHQSELDFASLVAKVKKCLKPKGYFIFCYEALSLCLVIEGLKSVKLTLETLRFVQSFKD 182
ARH+ + + LK G + A L V+ ++ V + + + F+ S
Sbjct: 139 ARHEIMCTLEDCMIAARHLLKEGGRLNMVHRAERLMDVLFEMRKVNIEPKKVVFIYSKVG 198
Query: 183 KNAHLMLGAARNNSKSALKVLPPL-ITHHSKNQSDNTKEV 221
K+A ++ R L+++PP I + N S+ KEV
Sbjct: 199 KSAQTIVVEGRKGGNQGLEIMPPFYIYNEDGNYSEEMKEV 238
>ref|NP_645259.1| (NC_003923) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB94307.1| (AP004823) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 241
Score = 54.3 bits (129), Expect = 1e-06
Identities = 51/220 (23%), Positives = 95/220 (43%), Gaps = 15/220 (6%)
Query: 13 NAYSYNSDSLFLYDFSRPFIKNSGAILDIGSGCGILGLLCARDNPLAIVHLVEKDNKMAF 72
+ +S+++D+L L F++P K+ +LD+ SG G++ LL +P I + + K
Sbjct: 23 DVFSFSTDALLLGHFTKPRTKD--IVLDLCSGNGVIPLLLFAKHPRHIEGV--EIQKTLV 78
Query: 73 CSQKNALKFPNAQVF-EGDFLDFN------PPILYDIIVCNPPFYALGSIKSKIK-GH-- 122
+ +F + + +D P Y ++ CNPP++ K H
Sbjct: 79 DMARRTFQFNDVDEYITMHHMDLKNVTKVFKPSQYTLVTCNPPYFKENQQHQHQKEAHKI 138
Query: 123 ARHQSELDFASLVAKVKKCLKPKGYFIFCYEALSLCLVIEGLKSVKLTLETLRFVQSFKD 182
ARH+ + + LK G + A L V+ ++ V + + + F+ S
Sbjct: 139 ARHEIMCTLEDCMIAARHLLKEGGRLNMVHRAERLMDVLFEMRKVNIEPKKVVFIYSKVG 198
Query: 183 KNAHLMLGAARNNSKSALKVLPPL-ITHHSKNQSDNTKEV 221
K+A ++ R L+++PP I + N S+ KEV
Sbjct: 199 KSAQTIVVEGRKGGNQGLEIMPPFYIYNEDGNYSEEMKEV 238
>sp|P31825|YFIC_ECOLI Hypothetical protein yfiC
Length = 245
Score = 53.5 bits (127), Expect = 2e-06
Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 39 LDIGSGCGILGLLCA-RDNPLAIVHLVEKDNKMAFCSQKNALKFPNAQVFEGDFLDFNP- 96
LDIG+G G+L L+ A R + ++ VE +++ A +Q+N + P A+ D
Sbjct: 49 LDIGAGSGLLALMLAQRTDDSVMIDAVELESEAAAQAQENINQSPWAERINVHTADIQQW 108
Query: 97 ----PILYDIIVCNPPFYALG-SIKSKIKGHARHQSELDFASLVAKVKKCLKPKGYF 148
+ +D+I+ NPP+Y G + + AR+ + LD SL+ +C+ +G+F
Sbjct: 109 ITQQTVRFDLIISNPPYYQQGVECSTPQREQARYTTTLDHPSLLTCAAECITEEGFF 165
>ref|NP_417070.1| (NC_000913) putative enzyme [Escherichia coli K12]
pir||F65035 hypothetical protein in nadB-srmB intergenic region - Escherichia
coli (strain K-12)
gb|AAC75628.1| (AE000344) putative enzyme [Escherichia coli K12]
Length = 285
Score = 53.5 bits (127), Expect = 2e-06
Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 39 LDIGSGCGILGLLCA-RDNPLAIVHLVEKDNKMAFCSQKNALKFPNAQVFEGDFLDFNP- 96
LDIG+G G+L L+ A R + ++ VE +++ A +Q+N + P A+ D
Sbjct: 89 LDIGAGSGLLALMLAQRTDDSVMIDAVELESEAAAQAQENINQSPWAERINVHTADIQQW 148
Query: 97 ----PILYDIIVCNPPFYALG-SIKSKIKGHARHQSELDFASLVAKVKKCLKPKGYF 148
+ +D+I+ NPP+Y G + + AR+ + LD SL+ +C+ +G+F
Sbjct: 149 ITQQTVRFDLIISNPPYYQQGVECSTPQREQARYTTTLDHPSLLTCAAECITEEGFF 205
>ref|NP_371011.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_373697.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB41675.1| (AP003130) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB56649.1| (AP003359) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
Length = 241
Score = 52.8 bits (125), Expect = 3e-06
Identities = 50/220 (22%), Positives = 95/220 (42%), Gaps = 15/220 (6%)
Query: 13 NAYSYNSDSLFLYDFSRPFIKNSGAILDIGSGCGILGLLCARDNPLAIVHLVEKDNKMAF 72
+ +S+++D+L L F++P K+ +LD+ SG G++ LL +P I + + K
Sbjct: 23 DVFSFSTDALLLGHFTKPRTKD--IVLDLCSGNGVIPLLLFAKHPRHIEGV--EIQKTLV 78
Query: 73 CSQKNALKFPNAQVF-EGDFLDFN------PPILYDIIVCNPPFYALGSIKSKIK-GH-- 122
+ +F + + +D P Y ++ CNPP++ K H
Sbjct: 79 DMARRTFQFNDVDEYLTMHHMDLKNVTKVFKPSQYTLVTCNPPYFKENQQHQHQKEAHKI 138
Query: 123 ARHQSELDFASLVAKVKKCLKPKGYFIFCYEALSLCLVIEGLKSVKLTLETLRFVQSFKD 182
ARH+ + + LK G + A L V+ ++ V + + + F+ S
Sbjct: 139 ARHEIMCTLEDCMIAARHLLKEGGRLNMVHRADRLMDVLFEMRKVNIEPKKVVFIYSKVG 198
Query: 183 KNAHLMLGAARNNSKSALKVLPPL-ITHHSKNQSDNTKEV 221
K+A ++ R L+++PP I + N S+ K+V
Sbjct: 199 KSAQTIVVEGRKGGNQGLEIMPPFYIYNEDGNYSEEMKDV 238
>ref|NP_457118.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
emb|CAD02791.1| (AL627275) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 245
Score = 52.4 bits (124), Expect = 4e-06
Identities = 38/118 (32%), Positives = 58/118 (48%), Gaps = 7/118 (5%)
Query: 38 ILDIGSGCGILGLLCA-RDNPLAIVHLVEKDNKMAFCSQKNALKFP---NAQVFEGDFLD 93
ILDIG+G G+L L+ A R + V VE D A +Q+N P V D
Sbjct: 48 ILDIGTGSGLLALMLAQRTDDSVPVDAVELDAGAAMQAQENVAHSPWPHRITVHTDDIQR 107
Query: 94 FNP--PILYDIIVCNPPFYALG-SIKSKIKGHARHQSELDFASLVAKVKKCLKPKGYF 148
+ P + +D+I+ NPP+Y G + + AR+ + LD +L+A C+ G+F
Sbjct: 108 WAPRQTVRFDLIISNPPYYEPGVECSTPQREQARYTATLDHQTLLAIAADCITEDGFF 165
>ref|NP_289133.1| (NC_002655) putative enzyme [Escherichia coli O157:H7 EDL933]
ref|NP_311468.1| (NC_002695) putative enzyme [Escherichia coli O157:H7]
gb|AAG57691.1|AE005488_2 (AE005488) putative enzyme [Escherichia coli O157:H7 EDL933]
dbj|BAB36864.1| (AP002562) putative enzyme [Escherichia coli O157:H7]
Length = 285
Score = 52.0 bits (123), Expect = 5e-06
Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 39 LDIGSGCGILGLLCA-RDNPLAIVHLVEKDNKMAFCSQKNALKFPNAQVFEGDFLDFNPP 97
LDIG+G G+L L+ A R + I+ VE +++ A +Q+N + P + D
Sbjct: 89 LDIGAGSGLLALMLAQRTSDSVIIDAVELESEAATQAQENVAQSPWLERINVHTADIQQW 148
Query: 98 IL-----YDIIVCNPPFYALG-SIKSKIKGHARHQSELDFASLVAKVKKCLKPKGYF 148
+ +D+I+ NPP+Y G + + AR+ + LD +L+ +C+ +G+F
Sbjct: 149 VTQQTARFDLIISNPPYYEQGVECATPQREQARYTTSLDHQTLLTCAAECITEEGFF 205
>ref|NP_461577.1| (NC_003197) putative transferase [Salmonella typhimurium LT2]
gb|AAL21536.1| (AE008820) putative transferase [Salmonella typhimurium LT2]
Length = 245
Score = 51.2 bits (121), Expect = 9e-06
Identities = 37/118 (31%), Positives = 58/118 (48%), Gaps = 7/118 (5%)
Query: 38 ILDIGSGCGILGLLCA-RDNPLAIVHLVEKDNKMAFCSQKNALKFP---NAQVFEGDFLD 93
ILDIG+G G+L L+ A R + + VE D A +Q+N P V D
Sbjct: 48 ILDIGTGSGLLALMLAQRTDDNVPIDAVELDAGAAMQAQENVAHSPWPHRITVHTDDIQR 107
Query: 94 FNP--PILYDIIVCNPPFYALG-SIKSKIKGHARHQSELDFASLVAKVKKCLKPKGYF 148
+ P + +D+I+ NPP+Y G + + AR+ + LD +L+A C+ G+F
Sbjct: 108 WAPRQTVRFDLIISNPPYYEPGVECATPQREQARYTATLDHQTLLAIAADCITEDGFF 165
>ref|NP_326303.1| (NC_002771) DNA METHYLASE [Mycoplasma pulmonis]
emb|CAC13645.1| (AL445564) DNA METHYLASE [Mycoplasma pulmonis]
Length = 267
Score = 49.7 bits (117), Expect = 3e-05
Identities = 56/236 (23%), Positives = 98/236 (40%), Gaps = 17/236 (7%)
Query: 6 LRLYQPLNAYSYNSDSLFLYDFSRPFIKNSGAILDIGSGCGILGLLCARDNPLAIVHLVE 65
L++YQ +A++Y+ D++ L +F + L+IG+ G L + A + VE
Sbjct: 29 LKVYQDKDAFNYSVDTILLGNFIH-LTTSIKYALEIGANNGALSIFVASRKKDLKIDAVE 87
Query: 66 KDNKMAFCSQKNALKFPNAQ----VFEGDFLDF------NPPILYDIIVCNPPFYALGSI 115
+ + +QKN ++ N + + DF DF N Y I NPP+Y L
Sbjct: 88 IQKEPSELAQKN-VELNNLESQIKIINQDFNDFYKNHQKNTLKKYQSIFVNPPYYQLDKN 146
Query: 116 KS----KIKGHARHQSELDFASLVAKVKKCLKPKGYFIFCYEALSLCLVIEGLKSVKLTL 171
K+ K K A H+ ++ ++ + ++ KGY F L + L+
Sbjct: 147 KTKKIEKSKLIATHEVSINLEQIIKGSRGIIEQKGYLNFVIPIERLVDLFYLLRKYNFEP 206
Query: 172 ETLRFVQSFKDKNAHLMLGAARNNSKSALKVLPPLITH-HSKNQSDNTKEVLSIYQ 226
+ ++ V + A L +R NS + L L H KN +E+ Y+
Sbjct: 207 KRVQLVYPRIYEKAKFALVESRFNSGWGVHFLKNLYLHPEDKNDHSYLEEIKKKYK 262
>ref|NP_213464.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
pir||D70359 conserved hypothetical protein aq_674 - Aquifex aeolicus
gb|AAC06868.1| (AE000701) hypothetical protein [Aquifex aeolicus]
Length = 239
Score = 49.3 bits (116), Expect = 4e-05
Identities = 58/231 (25%), Positives = 92/231 (39%), Gaps = 15/231 (6%)
Query: 3 RKLLRLYQPLNAYSYNSDSLFLYDFSRPFIKNSGAILDIGSGCGILGLLCARDNPLAIVH 62
R L+ +QP LFL P K + I+D+G+G G L + A+ + +V
Sbjct: 14 RGKLKFFQPKEHKISVDLVLFLSKIKPP--KRNYRIIDLGAGFGFLSITLAKKYGVKVVA 71
Query: 63 LVEKDNKMAFCSQKNALKFPNAQ----VFEGDFLDFNPPIL---YDIIVCNPPFYALGSI 115
E D +M +KN +K + V EGD + + ++++V NPPFY +
Sbjct: 72 F-EYDERMVKLLRKN-VKLNGVEHLVEVVEGDIKEIEKHLSRGSFNLVVSNPPFYPINYS 129
Query: 116 KSKIKGHARHQSELDFASLVAKVKKCLKPKGYFIFCYEALSLCLVIEGLKSVKLTLETLR 175
+ H + L V LK G L + E L + L L L
Sbjct: 130 PNPEPYHFEVYATL--KDFVRASSYLLKDGGELYLLSPCFRLYELTEYLSNFNLPLRKLS 187
Query: 176 FVQSFKDKNAHLMLGAARNNSKSALKVLPPLITHHSKNQSDNTKEVLSIYQ 226
+ K A L + + N K L+ PLI +K + T+EV + +
Sbjct: 188 LIYPTPLKRARLAITVSVKNVKGQLECDKPLII--NKENGEYTEEVKQLLE 236
>emb|CAD24416.1| (AJ431695) hypothetical protein [Paracoccus zeaxanthinifaciens]
Length = 246
Score = 48.1 bits (113), Expect = 8e-05
Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 21/226 (9%)
Query: 6 LRLYQPLNAYSYNSDSLFLYDFSRPFIKNSGAILDIGSGCGILGLLCARDNPLAIVHLVE 65
L+L+QP Y +D++ L R +S +L++G G G+ L A P +E
Sbjct: 14 LQLWQPARGYRSGADAVMLAAACRAAPGDS--VLELGCGAGVASLCLAARVPGLRCTGLE 71
Query: 66 KDNKMAFCSQKNALKFP-NAQVFEGDFLDFNPPI-----LYDIIVCNPPFYALGSIKSKI 119
+ A + +NA + V GD D PP +D ++ NPP++ LG +
Sbjct: 72 RQADYAALALRNAQECGLPLDVLTGDLSD--PPAGLRGRGFDHVIMNPPYF-LGGTPAPD 128
Query: 120 KGHARHQSE---LDFASLVAKVKKCLKPKGYFIFCYEALSLCLVIEGLKSVKLTLETLRF 176
G A ++E LD L A +++ L PKG+ A L +I L+ + L
Sbjct: 129 AGRATARTEETPLD-DWLDAGLRR-LNPKGWLTVIQRADRLDRIIAALQGRAGAIAILP- 185
Query: 177 VQSFKDKNAHLMLGAARNNSKSALKVLPPLITH----HSKNQSDNT 218
+ + + + A ++ AAR +++ L++L P + H H ++ D T
Sbjct: 186 IAARQGREAGRVIVAARKGARAPLRLLAPFVMHDAPRHDVDREDLT 231
>emb|CAA50273.1| (X70925) y210 [Pediococcus acidilactici]
Length = 211
Score = 48.1 bits (113), Expect = 8e-05
Identities = 48/197 (24%), Positives = 91/197 (45%), Gaps = 15/197 (7%)
Query: 38 ILDIGSGCGILGLLCARDNPLAIVHLVEKDNKMAFCSQKNAL------KFPNAQVFEGDF 91
I+D+ +G G +GL ++ V +VE +++A ++++ L ++ + D
Sbjct: 13 IVDLCAGNGAVGLFLSKKTH-GHVTMVEIQSRLAEMAERSILLNDLKERYRVLNLPLADS 71
Query: 92 LDFNPPILYDIIVCNPPFYALGSIKSKIKGH----ARHQSELDFASLVAKV-KKCLKPKG 146
L D IVCNPP++ K ARH E+ +S+ + +K LK G
Sbjct: 72 LGTIKTDSVDNIVCNPPYFPNHPDSKKNPNQFLAIARH--EITTSSMKFETSQKMLKMNG 129
Query: 147 YFIFCYEALSLCLVIEGLKSVKLTLETLRFVQSFKDKNAHLML-GAARNNSKSALKVLPP 205
+ L +I +L + ++FV S + A+++L A ++ + +++LPP
Sbjct: 130 KLFMVHRPDRLPEIINDFTQNRLAPKRIQFVHSHEGDEANMVLIEAIKDGRPNGVRILPP 189
Query: 206 LITHHSKNQSDNTKEVL 222
+IT+ S KE+L
Sbjct: 190 IITYDGLEYSPTVKEML 206
>emb|CAA41480.1| (X58627) hypothetical protein [Pseudoalteromonas haloplanktis]
Length = 232
Score = 47.4 bits (111), Expect = 1e-04
Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 25/206 (12%)
Query: 32 IKNSGAILDIGSGCGILGLLCARDNPLAIVHLVEKDNKMAFCSQKNALK--FPNAQVFEG 89
+ + ++LDIG+G G+L L+C + + + VE D + +N +P +
Sbjct: 33 LSGAKSLLDIGTGTGLLALMCKQRSSELDITAVEIDESAYTQALQNVANSPWPTISITHQ 92
Query: 90 DFLDFNPPILYDIIVCNPPFYALGSIK--SKIKGHARHQSELDFASLVAKVKKCLKPKGY 147
F+ + +D+++ NPP++ S+K + + ARH L F L+ K L +G
Sbjct: 93 TIQSFSSEVKFDVVISNPPYFN-HSLKGDNVARNTARHTDGLSFEELINAFKH-LSHRG- 149
Query: 148 FIFCYEALSLCL-VIEGLKSVKLTLETLRFVQSFKDKNAHLMLGAARNNSKSALKVLPPL 206
SL L IEG ++L + ++ N H + A N K +
Sbjct: 150 -----SRFSLILPSIEGALFIELATQNGLYL------NTHCQVKATPN------KDISRS 192
Query: 207 ITHHSKNQSDNTKEVLSIYQTCNTYS 232
+ S +SD +L I NTY+
Sbjct: 193 LMTFSYVKSDIETSILCIRNLDNTYT 218
>ref|NP_244777.1| (NC_002570) biotin synthesis BioC proein [Bacillus halodurans]
dbj|BAB07628.1| (AP001520) biotin synthesis BioC proein [Bacillus halodurans]
Length = 271
Score = 46.6 bits (109), Expect = 2e-04
Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 20/118 (16%)
Query: 37 AILDIGSGCGILGLLCARDNPLAIVHLVEKDNKMAFCSQKNALKFPNAQVFEGDF----L 92
AILDIG G G L C + P A + V+ +M ++KN PN Q +GD
Sbjct: 50 AILDIGCGTGWLTRECLKSFPQATIDAVDLSKQMLEVAEKNVSSHPNVQFIQGDIEKMVR 109
Query: 93 DFNPPILYDIIVCNPPFYALGSIKSKIKGHARHQSELDFASLVAKVKKCLKPKGYFIF 150
+ YD+IV N F L VA+++ LKP G +F
Sbjct: 110 EKPSAKTYDVIVANAVFQWLDKP----------------TETVAQLRSWLKPNGLLLF 151
>ref|NP_246778.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK03923.1| (AE006221) unknown [Pasteurella multocida]
Length = 237
Score = 46.2 bits (108), Expect = 3e-04
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 32 IKNSGAILDIGSGCGILGLLCA-RDNPLAIVHLVEKDNKMAFCSQKNALKFPNAQ---VF 87
+ S ILD+G+G G++ L+ A R + +H VE D +Q N P AQ V+
Sbjct: 37 VSQSERILDLGTGTGLIALMLAQRSTKESEIHAVELDQAAYLQAQANVHASPWAQRVHVY 96
Query: 88 EGDFLDF--NPPILYDIIVCNPPFYALG 113
+ D +F N +D+IV NPP++ G
Sbjct: 97 QQDAAEFCRNAVNKFDLIVANPPYFPQG 124
>ref|NP_613349.1| (NC_003551) Predicted RNA methylase [Methanopyrus kandleri AV19]
gb|AAM01279.1| (AE010306) Predicted RNA methylase [Methanopyrus kandleri AV19]
Length = 204
Score = 43.9 bits (102), Expect = 0.001
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 29 RPFIKNSGAILDIGSGCGILGLLCARDNPLAIVHLVEKDNKMAFCSQKNALKF---PNAQ 85
R F +LD+G+G G +G+ A + VE D+K +++N + +
Sbjct: 42 REFGLECSRVLDLGAGTGRIGIGAALAGACEVT-CVEVDSKAVEVARRNVKRAGVEDRVE 100
Query: 86 VFEGDFLDFNPPILYDIIVCNPPFYA 111
V E D DF P YD+ + NPPF A
Sbjct: 101 VVEADVRDFEPEDQYDVTIMNPPFGA 126
>ref|NP_406226.1| (NC_003143) conserved hypothetical protein [Yersinia pestis]
emb|CAC92948.1| (AJ414153) conserved hypothetical protein [Yersinia pestis]
Length = 252
Score = 43.9 bits (102), Expect = 0.001
Identities = 35/118 (29%), Positives = 57/118 (47%), Gaps = 7/118 (5%)
Query: 38 ILDIGSGCGILGLLCA-RDNPLAIVHLVEKDNKMAFCSQKNALKFPNAQ---VFEGDFLD 93
+LDIG G G++ L+ A R P + VE + A + N P A+ + + D
Sbjct: 55 VLDIGCGSGLIALMIAQRSLPQVQIDGVELEPAAAQQASSNVELSPWAERIHIHQQDIHQ 114
Query: 94 F--NPPILYDIIVCNPPFYALG-SIKSKIKGHARHQSELDFASLVAKVKKCLKPKGYF 148
F N P YD+IV NPP++A + + + + AR+ L +L+ +K + G F
Sbjct: 115 FAENHPHQYDLIVSNPPYFAPAIACRDEARDTARYTGSLTHDALLNCAEKLITEDGMF 172
>ref|NP_240003.1| (NC_002528) hemK protein [Buchnera sp. APS]
sp|P57269|HEMK_BUCAI HemK protein homolog (M.BusHemKP)
dbj|BAB12889.1| (AP001118) hemK protein [Buchnera sp. APS]
Length = 277
Score = 43.5 bits (101), Expect = 0.002
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 34 NSGAILDIGSGCGILGLLCARDNP-LAIVHLVEKDNKMAFCS-QKNALKFPNAQVFEGDF 91
NS ILD+G+GCG + L A N I+ + + +N +A + L F N F D+
Sbjct: 109 NSACILDLGTGCGAIALALASINSNWNIIGIDKSENALAIARINASKLNFKNVTFFFSDW 168
Query: 92 LDFNPPILYDIIVCNPPFYALGSIK 116
N ++IIV NPP+ + IK
Sbjct: 169 F-LNIKKKFNIIVSNPPYVSKKEIK 192
>ref|NP_469629.1| (NC_003212) conserved hypothetical protein [Listeria innocua]
emb|CAC95517.1| (AL596164) conserved hypothetical protein [Listeria innocua]
Length = 201
Score = 43.1 bits (100), Expect = 0.003
Identities = 36/136 (26%), Positives = 56/136 (40%), Gaps = 21/136 (15%)
Query: 36 GAILDIGSGCGILGLLCARDNPLAIVHLVEKDNKMAFCSQKNA--LKFPNAQVFEGDFLD 93
G ILD+G G G +GL A+ P + + +V+ + + +++NA K N ++E D
Sbjct: 61 GKILDVGCGYGPMGLTVAKAFPDSQIEMVDVNLRALELAKENAEINKITNTHIYESSVYD 120
Query: 94 FNPPILYDIIVCNPPFYA----LGSIKSKIKGHARHQSEL---------------DFASL 134
Y I+ NPP A + +I H R EL +
Sbjct: 121 NVTANDYQAIISNPPIRAGKKVVHAILEGAYDHLRETGELWIVIQKKQGGPSAEKKMEEV 180
Query: 135 VAKVKKCLKPKGYFIF 150
V+ + KGYFIF
Sbjct: 181 FGNVETVARDKGYFIF 196
>ref|NP_463787.1| (NC_003210) conserved hypothetical protein [Listeria monocytogenes
EGD-e]
emb|CAD00783.1| (AL591974) conserved hypothetical protein [Listeria monocytogenes]
Length = 201
Score = 42.7 bits (99), Expect = 0.003
Identities = 36/136 (26%), Positives = 54/136 (39%), Gaps = 21/136 (15%)
Query: 36 GAILDIGSGCGILGLLCARDNPLAIVHLVEKDNKMAFCSQKNA--LKFPNAQVFEGDFLD 93
G ILD+G G G +GL A+ P + + +V+ + + +++NA K N ++E D
Sbjct: 61 GKILDVGCGYGPMGLTVAKAFPDSQIEMVDVNLRALELAKENAEINKITNTHIYESSVYD 120
Query: 94 FNPPILYDIIVCNPPFYALGSIKSKI-------------------KGHARHQSELDFASL 134
Y I+ NPP A I I K +E +
Sbjct: 121 NVTANDYQAIISNPPIRAGKKIVHAILEGAYDHLQETGELWIVIQKKQGGPSAEKKMEEV 180
Query: 135 VAKVKKCLKPKGYFIF 150
V+ K KGYFIF
Sbjct: 181 FGNVETVAKDKGYFIF 196
>ref|NP_143569.1| (NC_000961) hypothetical protein [Pyrococcus horikoshii]
pir||F71181 hypothetical protein PH1731 - Pyrococcus horikoshii
Length = 198
Score = 42.4 bits (98), Expect = 0.004
Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 9/156 (5%)
Query: 6 LRLYQPLNAYSYNSDSLFLYDFSRPFIKNSGAILDIGSGCGILGLLCARDNPLAI-VHLV 64
L++ Y D+ L + +K+ +LD+G+G GIL LL AR + + +
Sbjct: 8 LKIESNEEVYEPAEDTFLLAESLLDEVKSDDIVLDVGTGTGILALLAARRARFVVGLDIN 67
Query: 65 EKDNKMAFCSQK-NALKFPNAQVFEGDFLDFNPPILYDIIVCNPPFYALGSIKSKIK--- 120
EK +A+ + K N +K N D + N +D+IV NPP+ IK K+
Sbjct: 68 EKAINLAWKNAKINGIK--NVVFILSDLFE-NIRGTFDLIVFNPPYLPGEEIKDKVDLAL 124
Query: 121 GHARHQSELDFASLVAKVKKCLKPKGYFIFCYEALS 156
+ E+ + + VK L +G + Y +L+
Sbjct: 125 IGGKTGGEV-ISRFLGSVKDYLSSRGRILLIYSSLT 159
>sp|P10835|MTC3_CHVN1 MODIFICATION METHYLASE CVIBIII (ADENINE-SPECIFIC METHYLTRANSFERASE
CVIBIII) (M.CVIBIII)
pir||S01615 site-specific DNA-methyltransferase (adenine-specific) (EC
2.1.1.72) CviBIII - Chlorella virus CV-NC1A
emb|CAA29835.1| (X06618) methyltransferase (AA 1-377) [Chlorella virus NC1A]
Length = 377
Score = 42.4 bits (98), Expect = 0.004
Identities = 50/179 (27%), Positives = 74/179 (40%), Gaps = 10/179 (5%)
Query: 24 LYDFSRPFIKNSG-AILDIGSGCGILGLLCARDNPLAIVHLVEKDNKMA-FCSQKNALKF 81
L+ F+ F G +IL+ G G + C PLA + VE DN M+ CS+K A
Sbjct: 38 LFGFTEHFQNTPGFSILEPSCGTGEIISECVERFPLASIKGVELDNDMSTICSKKYAEY- 96
Query: 82 PNAQVFEGDFLDFNPPILYDIIVCNPPFYALGSIKSKIKGHARHQSELDFASLVAKVKKC 141
N + DFL + +D IV NPP+ S A+ +S L L + +
Sbjct: 97 -NVDIVNEDFLLWKGG-KFDFIVGNPPYVVRPSGYKNDNRIAKGRSNLYVEFLYKCITEH 154
Query: 142 LKPKGYFIFCY-EALSLCLVIEGLKSVKLTLETLRF----VQSFKDKNAHLMLGAARNN 195
LK G F + E ++ + +TL+ L F F D N L +N+
Sbjct: 155 LKEDGILAFIIPSTIGNSSFYEPIRKLIITLDILSFEILDKHDFCDTNTRLCSIVIKNS 213
>ref|NP_387987.1| (NC_000964) alternate gene name: ybaA~similar to hypothetical
proteins [Bacillus subtilis]
sp|P37872|YBXB_BACSU Hypothetical protein ybxB (P23) (ORF23)
pir||F69751 conserved hypothetical protein ybxB - Bacillus subtilis
gb|AAB00971.1| (L24376) hypothetical protein [Bacillus subtilis]
emb|CAB11882.1| (Z99104) alternate gene name: ybaA~similar to hypothetical proteins
[Bacillus subtilis]
Length = 201
Score = 42.0 bits (97), Expect = 0.006
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 24/150 (16%)
Query: 22 LFLYDFSRPFIKNSGAILDIGSGCGILGLLCARDNPLAIVHLVEKDNKMAFCSQKNALK- 80
L + F P ++ G ILD+G G G +GL A D +H+++ + + S +NA +
Sbjct: 48 LLIDSFEEPEVE--GGILDVGCGYGPIGLSLASDFKDRTIHMIDVNERAVELSNENAEQN 105
Query: 81 -FPNAQVFEGD-FLDFNPPILYDIIVCNPPFYA----LGSIKSKIKGHARHQSEL----- 129
N ++++ D F + + + I+ NPP A + +I K H + EL
Sbjct: 106 GITNVKIYQSDLFSNVDSAQTFASILTNPPIRAGKKVVHAIFEKSAEHLKASGELWIVIQ 165
Query: 130 ----------DFASLVAKVKKCLKPKGYFI 149
L +V K KGY+I
Sbjct: 166 KKQGAPSAIEKLEELFDEVSVVQKKKGYYI 195
>ref|NP_530790.1| (NC_003304) ribosomal RNA small subunit methyltransferase
[Agrobacterium tumefaciens str. C58 (U. Washington)]
gb|AAL41106.1| (AE008982) ribosomal RNA small subunit methyltransferase
[Agrobacterium tumefaciens str. C58 (U. Washington)]
Length = 338
Score = 42.0 bits (97), Expect = 0.006
Identities = 30/92 (32%), Positives = 41/92 (43%), Gaps = 4/92 (4%)
Query: 36 GAILDIGSGCGILGLLCARDNP-LAIVHLVEKD-NKMAFCSQKNALKFPN--AQVFEGDF 91
G D G+G G L ++ A +P A + L E D N + F P A+ F D
Sbjct: 195 GNAADFGAGWGYLSIMLAEKSPRTARIDLFEADWNALEFAKTNLLENNPRLTARFFWQDL 254
Query: 92 LDFNPPILYDIIVCNPPFYALGSIKSKIKGHA 123
+ P YD+I+ NPPF+A G G A
Sbjct: 255 ANEPPKEKYDLIIMNPPFHAAGQAAEPALGQA 286
>ref|NP_353117.1| (NC_003062) AGR_C_122p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
gb|AAK85902.1| (AE007950) AGR_C_122p [Agrobacterium tumefaciens str. C58 (Cereon)]
Length = 333
Score = 42.0 bits (97), Expect = 0.006
Identities = 30/92 (32%), Positives = 41/92 (43%), Gaps = 4/92 (4%)
Query: 36 GAILDIGSGCGILGLLCARDNP-LAIVHLVEKD-NKMAFCSQKNALKFPN--AQVFEGDF 91
G D G+G G L ++ A +P A + L E D N + F P A+ F D
Sbjct: 190 GNAADFGAGWGYLSIMLAEKSPRTARIDLFEADWNALEFAKTNLLENNPRLTARFFWQDL 249
Query: 92 LDFNPPILYDIIVCNPPFYALGSIKSKIKGHA 123
+ P YD+I+ NPPF+A G G A
Sbjct: 250 ANEPPKEKYDLIIMNPPFHAAGQAAEPALGQA 281
>ref|NP_240990.1| (NC_002570) BH0124~unknown conserved protein [Bacillus halodurans]
dbj|BAB03843.1| (AP001507) BH0124~unknown conserved protein [Bacillus halodurans]
Length = 201
Score = 42.0 bits (97), Expect = 0.006
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 23/149 (15%)
Query: 22 LFLYDFSRPFIKNSGAILDIGSGCGILGLLCARDNPLAIVHLVEKDNKMAFCSQKNAL-- 79
L + F P I+ G +LD+G G G +G+ ARD VH+V+ + + +++NA
Sbjct: 48 LLIETFQFPEIE--GDVLDVGCGYGPIGISLARDGGERSVHMVDVNERAIDLAKRNATAN 105
Query: 80 KFPNAQVFEGDFLDFNPPILYDIIVCNPPFYALGSIKSKIKGHARH-------------- 125
N V+ D + IV NPP A + ++ AR
Sbjct: 106 HVKNVVVYRSDLFQQVQDRQFAAIVTNPPIRAGKRVVHQLFEDARDYLLSNGELWIVIQK 165
Query: 126 ----QSELD-FASLVAKVKKCLKPKGYFI 149
S LD +L +V+ K KGYFI
Sbjct: 166 KQGAPSTLDKLHNLYEEVEVVTKKKGYFI 194
>ref|NP_616374.1| (NC_003552) HemK related protein [Methanosarcina acetivorans str.
C2A] [Methanosarcina acetivorans C2A]
gb|AAM04854.1| (AE010814) HemK related protein [Methanosarcina acetivorans str.
C2A] [Methanosarcina acetivorans C2A]
Length = 202
Score = 41.6 bits (96), Expect = 0.007
Identities = 42/169 (24%), Positives = 70/169 (40%), Gaps = 16/169 (9%)
Query: 15 YSYNSDSLFLYDFSRPFIKNSGAILDIGSGCGILGLLCARDNPLAIVHLVEKDNKMAFCS 74
Y DS L D + K +L+IG+G G + + + + E + A C+
Sbjct: 20 YEPAEDSFLLADAALEEAKPGMRVLEIGAGSGFVSAVLRANVEDIRIFATEINPHAARCA 79
Query: 75 QKNALKFPNAQVFEGDFLDFNPPILYDIIVCNPPFYAL-------GSIKSKIKGHARHQS 127
+ N ++ +F G + +D+I+ NPP+ G + G A +
Sbjct: 80 KANGIEVIRTDLFRG-LKPGSSKTSFDLILFNPPYLPTSEEEKVPGWLNYAFDGGASGRE 138
Query: 128 ELDFASLVAKVKKCLKPKGYFIFCYEALSLCLVIEGLKSVKLTLETLRF 176
LD + +V+ LKP G + L L I GL++VK +E L F
Sbjct: 139 TLD--RFLDEVRNYLKPGG------KILVLISSITGLEAVKERMERLGF 179
>ref|NP_457609.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
emb|CAD07744.1| (AL627278) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 378
Score = 41.2 bits (95), Expect = 0.010
Identities = 31/117 (26%), Positives = 52/117 (43%), Gaps = 18/117 (15%)
Query: 36 GAILDIGSGCGILGLLCARDNPLAIVHLVEKDNKMAFCSQKNALKFPNAQVFE------G 89
G I+D+G G G++GL NP A V V+ ++ MA S + ++ + FE
Sbjct: 230 GEIVDLGCGNGVIGLSLLAKNPQANVVFVD-ESPMAVDSSRLNVETNLPEAFERCEFMIN 288
Query: 90 DFLDFNPPILYDIIVCNPPFYALGSIKSKIKGHARHQSELDFASLVAKVKKCLKPKG 146
+ L P ++ + CNPPF+ ++ I H + ++CLK G
Sbjct: 289 NALSGVEPFRFNAVFCNPPFHQKHALTDNIAWEMFHHA-----------RRCLKING 334
>ref|NP_462134.1| (NC_003197) paral putative methyltransferase [Salmonella
typhimurium LT2]
gb|AAL22093.1| (AE008848) paral putative methyltransferase [Salmonella typhimurium
LT2]
Length = 378
Score = 41.2 bits (95), Expect = 0.010
Identities = 31/117 (26%), Positives = 52/117 (43%), Gaps = 18/117 (15%)
Query: 36 GAILDIGSGCGILGLLCARDNPLAIVHLVEKDNKMAFCSQKNALKFPNAQVFE------G 89
G I+D+G G G++GL NP A V V+ ++ MA S + ++ + FE
Sbjct: 230 GEIVDLGCGNGVIGLSLLAKNPQANVVFVD-ESPMAVDSSRLNVETNLPEAFERCEFMIN 288
Query: 90 DFLDFNPPILYDIIVCNPPFYALGSIKSKIKGHARHQSELDFASLVAKVKKCLKPKG 146
+ L P ++ + CNPPF+ ++ I H + ++CLK G
Sbjct: 289 NALSGVEPFRFNAVFCNPPFHQKHALTDNIAWEMFHHA-----------RRCLKING 334
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.323 0.139 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,409,692
Number of Sequences: 1026957
Number of extensions: 5968767
Number of successful extensions: 18977
Number of sequences better than 1.0e-02: 48
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 18920
Number of HSP's gapped (non-prelim): 51
length of query: 238
length of database: 324,149,939
effective HSP length: 118
effective length of query: 120
effective length of database: 202,969,013
effective search space: 24356281560
effective search space used: 24356281560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 95 (41.2 bits)