BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646116|ref|NP_208298.1| conserved hypothetical
ATP-binding protein [Helicobacter pylori 26695]
(385 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208298.1| (NC_000915) conserved hypothetical ATP-bin... 794 0.0
ref|NP_224118.1| (NC_000921) putative [Helicobacter pylori ... 774 0.0
ref|NP_281382.1| (NC_002163) hypothetical protein Cj0172c [... 505 e-142
ref|NP_244825.1| (NC_002570) BH3957~unknown conserved prote... 483 e-135
ref|NP_345403.1| (NC_003028) conserved hypothetical protein... 459 e-128
ref|NP_358414.1| (NC_003098) Conserved hypothetical protein... 459 e-128
ref|NP_442195.1| (NC_000911) unknown protein [Synechocystis... 425 e-118
ref|NP_294976.1| (NC_001263) conserved hypothetical protein... 394 e-109
ref|NP_245309.1| (NC_002663) unknown [Pasteurella multocida... 305 8e-82
ref|NP_231263.1| (NC_002505) conserved hypothetical protein... 286 2e-76
ref|NP_356480.1| (NC_003063) AGR_L_1365p [Agrobacterium tum... 285 6e-76
ref|NP_540505.1| (NC_003317) carboxynorspermidine dehydroge... 280 3e-74
ref|NP_438089.1| (NC_003078) conserved hypothetical protein... 278 6e-74
ref|NP_631684.1| (NC_003888) putative ATP binding protein [... 129 7e-29
ref|NP_070417.1| (NC_000917) conserved hypothetical protein... 66 6e-10
ref|NP_519259.1| (NC_003295) PUTATIVE TRANSMEMBRANE PROTEIN... 49 1e-04
ref|NP_649517.1| (NM_141260) CG2604 gene product [Drosophil... 49 1e-04
gb|AAK83327.1| (AF368901) chimeric spermidine synthase/sacc... 44 0.003
>ref|NP_208298.1| (NC_000915) conserved hypothetical ATP-binding protein
[Helicobacter pylori 26695]
pir||C64708 conserved hypothetical ATP-binding protein HP1507 - Helicobacter
pylori (strain 26695)
gb|AAD08549.1| (AE000649) conserved hypothetical ATP-binding protein [Helicobacter
pylori 26695]
Length = 385
Score = 794 bits (2051), Expect = 0.0
Identities = 385/385 (100%), Positives = 385/385 (100%)
Query: 1 MVAHKMGMNRDVFKNIILASRSLDKCYAIKESMLKKGLGEIGVEQVDADDTQALVALIQK 60
MVAHKMGMNRDVFKNIILASRSLDKCYAIKESMLKKGLGEIGVEQVDADDTQALVALIQK
Sbjct: 1 MVAHKMGMNRDVFKNIILASRSLDKCYAIKESMLKKGLGEIGVEQVDADDTQALVALIQK 60
Query: 61 YKPKVVINVALPYQDLTIMQACLETKTHYIDTANYEHPDLAKFEYKEQWAFDRAYKEVGI 120
YKPKVVINVALPYQDLTIMQACLETKTHYIDTANYEHPDLAKFEYKEQWAFDRAYKEVGI
Sbjct: 61 YKPKVVINVALPYQDLTIMQACLETKTHYIDTANYEHPDLAKFEYKEQWAFDRAYKEVGI 120
Query: 121 LGVLGAGFDPGVTNAYVAHAQKHHFDTIHTLDILDCNAGDHKRPFATNFNPEINLREVSS 180
LGVLGAGFDPGVTNAYVAHAQKHHFDTIHTLDILDCNAGDHKRPFATNFNPEINLREVSS
Sbjct: 121 LGVLGAGFDPGVTNAYVAHAQKHHFDTIHTLDILDCNAGDHKRPFATNFNPEINLREVSS 180
Query: 181 KGRYYENGKWIETKPLEIKQVWAYPQIGEMDSYLLYHEELESLVKNIKGLRRARFFMTFS 240
KGRYYENGKWIETKPLEIKQVWAYPQIGEMDSYLLYHEELESLVKNIKGLRRARFFMTFS
Sbjct: 181 KGRYYENGKWIETKPLEIKQVWAYPQIGEMDSYLLYHEELESLVKNIKGLRRARFFMTFS 240
Query: 241 QNYLTHMKCLENVGMLGIKEIEHQGVKIVPIQFLKTLLPDPATLAKDTTGKTNIGCYMTG 300
QNYLTHMKCLENVGMLGIKEIEHQGVKIVPIQFLKTLLPDPATLAKDTTGKTNIGCYMTG
Sbjct: 241 QNYLTHMKCLENVGMLGIKEIEHQGVKIVPIQFLKTLLPDPATLAKDTTGKTNIGCYMTG 300
Query: 301 IKNNQDKTLYIYNVCDHKKCYEEVGSQAISYTTGVPAMCAAKMICNDTWSADHFRTGVFN 360
IKNNQDKTLYIYNVCDHKKCYEEVGSQAISYTTGVPAMCAAKMICNDTWSADHFRTGVFN
Sbjct: 301 IKNNQDKTLYIYNVCDHKKCYEEVGSQAISYTTGVPAMCAAKMICNDTWSADHFRTGVFN 360
Query: 361 IEELNTDPFMEELIKQGLPYEVIER 385
IEELNTDPFMEELIKQGLPYEVIER
Sbjct: 361 IEELNTDPFMEELIKQGLPYEVIER 385
>ref|NP_224118.1| (NC_000921) putative [Helicobacter pylori J99]
pir||H71810 hypothetical protein jhp1400 - Helicobacter pylori (strain J99)
gb|AAD06981.1| (AE001562) putative [Helicobacter pylori J99]
Length = 399
Score = 774 bits (1998), Expect = 0.0
Identities = 369/385 (95%), Positives = 381/385 (98%)
Query: 1 MVAHKMGMNRDVFKNIILASRSLDKCYAIKESMLKKGLGEIGVEQVDADDTQALVALIQK 60
+VAHKMGMNRDVFKNIILASRSLDKC+AIKESMLKKGLGEIGVEQVDADDTQAL+ALIQK
Sbjct: 15 VVAHKMGMNRDVFKNIILASRSLDKCHAIKESMLKKGLGEIGVEQVDADDTQALIALIQK 74
Query: 61 YKPKVVINVALPYQDLTIMQACLETKTHYIDTANYEHPDLAKFEYKEQWAFDRAYKEVGI 120
+KPKVV+NVALPYQDLTIMQACLETKTHYIDTANYEHPDLAKFEYKEQWAFD+AYKE GI
Sbjct: 75 HKPKVVVNVALPYQDLTIMQACLETKTHYIDTANYEHPDLAKFEYKEQWAFDKAYKEAGI 134
Query: 121 LGVLGAGFDPGVTNAYVAHAQKHHFDTIHTLDILDCNAGDHKRPFATNFNPEINLREVSS 180
LGVLGAGFDPGVTNAYVAHAQ+HHFDTIHTLDILDCNAGDHKRPFATNFNPEINLREVSS
Sbjct: 135 LGVLGAGFDPGVTNAYVAHAQRHHFDTIHTLDILDCNAGDHKRPFATNFNPEINLREVSS 194
Query: 181 KGRYYENGKWIETKPLEIKQVWAYPQIGEMDSYLLYHEELESLVKNIKGLRRARFFMTFS 240
KGRYYENGKWIETKPLEIKQVWAYPQIGEMDSYLLYHEELESLVKN+KGLRRARFFMTFS
Sbjct: 195 KGRYYENGKWIETKPLEIKQVWAYPQIGEMDSYLLYHEELESLVKNVKGLRRARFFMTFS 254
Query: 241 QNYLTHMKCLENVGMLGIKEIEHQGVKIVPIQFLKTLLPDPATLAKDTTGKTNIGCYMTG 300
QNYLTHMKCLENVGMLGIKEIEHQGVKIVPIQFLKTLLPDP +LAKDTTGKTNIGCYMTG
Sbjct: 255 QNYLTHMKCLENVGMLGIKEIEHQGVKIVPIQFLKTLLPDPESLAKDTTGKTNIGCYMTG 314
Query: 301 IKNNQDKTLYIYNVCDHKKCYEEVGSQAISYTTGVPAMCAAKMICNDTWSADHFRTGVFN 360
IKNNQDKTLYIYNVCDHKKCYEEVGSQAISYTTGVPAMCAAKMICNDTWS +HF+ GVFN
Sbjct: 315 IKNNQDKTLYIYNVCDHKKCYEEVGSQAISYTTGVPAMCAAKMICNDTWSVEHFKAGVFN 374
Query: 361 IEELNTDPFMEELIKQGLPYEVIER 385
+EELNTDPFMEELIKQGLPYEVIER
Sbjct: 375 VEELNTDPFMEELIKQGLPYEVIER 399
>ref|NP_281382.1| (NC_002163) hypothetical protein Cj0172c [Campylobacter jejuni]
pir||C81435 hypothetical protein Cj0172c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72655.1| (AL139074) hypothetical protein Cj0172c [Campylobacter jejuni]
Length = 401
Score = 505 bits (1300), Expect = e-142
Identities = 243/381 (63%), Positives = 300/381 (77%), Gaps = 6/381 (1%)
Query: 5 KMGMNRDVFKNIILASRSLDKCYAIKESMLKKGLG-EIGVEQVDADDTQALVALIQKYKP 63
K MN D F I LASR+ KC I + +K+ LG +I Q+DADD+ A+V LI+K +
Sbjct: 19 KCAMNSDTFSKITLASRTKSKCDEIA-AFIKERLGVQIETAQIDADDSNAVVELIKKTEA 77
Query: 64 KVVINVALPYQDLTIMQACLETKTHYIDTANYEHPDLAKFEYKEQWAFDRAYKEVGILGV 123
++++NVALPYQDL++M AC++ YIDTANYEHPDLAKFEYKEQWA + +K+ GILG+
Sbjct: 78 QILLNVALPYQDLSLMDACIKAGIDYIDTANYEHPDLAKFEYKEQWARNDEFKQAGILGL 137
Query: 124 LGAGFDPGVTNAYVAHAQKHHFDTIHTLDILDCNAGDHKRPFATNFNPEINLREVSSKGR 183
LG+GFDPGVTN + A+AQ++ FD I +DILDCNAGDH FATNFNPEINLREVS+KGR
Sbjct: 138 LGSGFDPGVTNVFCAYAQQNLFDEISYIDILDCNAGDHGYAFATNFNPEINLREVSAKGR 197
Query: 184 YYENGKWIETKPLEIKQVWAYPQIGEMDSYLLYHEELESLVKNIKGLRRARFFMTFSQNY 243
Y+ENGKWIET+P+EIK W YP++G DSYLLYHEELESLVKNIKGL+R RFFMTF Q+Y
Sbjct: 198 YWENGKWIETQPMEIKMEWDYPEVGVKDSYLLYHEELESLVKNIKGLKRIRFFMTFGQSY 257
Query: 244 LTHMKCLENVGMLGIKEIEHQGVKIVPIQFLKTLLPDPATLAKDTTGKTNIGCYMTGIKN 303
LTHMKCLENVGMLGIK + HQG +I+PI+FLKTLLPDPA+L T G TNIGC + G K+
Sbjct: 258 LTHMKCLENVGMLGIKPVIHQGKEIIPIEFLKTLLPDPASLGPRTKGYTNIGCVIRGKKD 317
Query: 304 NQDKTLYIYNVCDHKKCYEEVGSQAISYTTGVPAMCAAKMICNDTWSADHFRTGVFNIEE 363
+DK +YIYNVC+H++CY+E G+QA+SYTTGVPAM K+I W GVFN+EE
Sbjct: 318 GKDKQVYIYNVCNHEECYKETGAQAVSYTTGVPAMIGTKLIAKGIWQG----KGVFNMEE 373
Query: 364 LNTDPFMEELIKQGLPYEVIE 384
+ PFMEEL QGLP+++IE
Sbjct: 374 FDAKPFMEELNSQGLPWKIIE 394
>ref|NP_244825.1| (NC_002570) BH3957~unknown conserved protein in others [Bacillus
halodurans]
dbj|BAB07676.1| (AP001520) BH3957~unknown conserved protein in others [Bacillus
halodurans]
Length = 410
Score = 483 bits (1243), Expect = e-135
Identities = 229/381 (60%), Positives = 292/381 (76%), Gaps = 5/381 (1%)
Query: 1 MVAHKMGMNRDVFKNIILASRSLDKCYAIKESMLKKGLGEIGVEQVDADDTQALVALIQK 60
+ HK N +VF+ I +ASR+ KC A+K + L G +I QVDA++ L+ALI++
Sbjct: 15 VAVHKCVQNSEVFEEICIASRTKSKCDALK-AKLDGGKTKITTAQVDANNVDELIALIEE 73
Query: 61 YKPKVVINVALPYQDLTIMQACLETKTHYIDTANYEHPDLAKFEYKEQWAFDRAYKEVGI 120
KP VV+N+ALPYQDLTIM ACL TKT+Y+DTANYE D AKFEYK QW + +++ GI
Sbjct: 74 VKPDVVMNLALPYQDLTIMDACLATKTNYLDTANYEPEDTAKFEYKWQWDYRERFEKAGI 133
Query: 121 LGVLGAGFDPGVTNAYVAHAQKHHFDTIHTLDILDCNAGDHKRPFATNFNPEINLREVSS 180
+LG+GFDPGVT + A+A KHHFD I +DILDCNAGDH PFATNFNPEIN+REVS+
Sbjct: 134 TALLGSGFDPGVTGVFSAYALKHHFDEIEYIDILDCNAGDHGYPFATNFNPEINIREVSA 193
Query: 181 KGRYYENGKWIETKPLEIKQVWAYPQIGEMDSYLLYHEELESLVKNIKGLRRARFFMTFS 240
GRY+ENG+W+ET P+EIK+V+ +P++GE D YLLYHEELESL NI G++R RFFMTFS
Sbjct: 194 NGRYWENGEWVETNPMEIKRVYNFPEVGEKDMYLLYHEELESLAVNIPGIKRIRFFMTFS 253
Query: 241 QNYLTHMKCLENVGMLGIKEIEHQGVKIVPIQFLKTLLPDPATLAKDTTGKTNIGCYMTG 300
++YLTH+KCLENVGM I+ IE +G +I+P+QFLK +LPDPA+L T GKTNIGC G
Sbjct: 254 ESYLTHLKCLENVGMTSIEPIEFEGKEIIPLQFLKAVLPDPASLGPRTKGKTNIGCIFKG 313
Query: 301 IKNNQDKTLYIYNVCDHKKCYEEVGSQAISYTTGVPAMCAAKMICNDTWSADHFRTGVFN 360
K+ +DKT Y+YNVCDH++CY+EVGSQA+SYTTGVPAM A M+ W+ + GV+N
Sbjct: 314 KKDGKDKTYYLYNVCDHEECYKEVGSQAVSYTTGVPAMIGAMMLMTGKWN----KPGVYN 369
Query: 361 IEELNTDPFMEELIKQGLPYE 381
IEE + DPFME L K GLP++
Sbjct: 370 IEEFDPDPFMEALNKWGLPWK 390
>ref|NP_345403.1| (NC_003028) conserved hypothetical protein [Streptococcus
pneumoniae TIGR4]
gb|AAK75043.1| (AE007397) conserved hypothetical protein [Streptococcus pneumoniae
TIGR4]
Length = 419
Score = 459 bits (1182), Expect = e-128
Identities = 222/399 (55%), Positives = 282/399 (70%), Gaps = 23/399 (5%)
Query: 5 KMGMNRDVFKNIILASRSLDKCYAIKESMLKKGLGEIGVEQVDADDTQALVALIQKYKPK 64
K+ + + F I++ASR+ KC +K + K +I +DAD + ++ALI+ YKP+
Sbjct: 19 KICQDSETFTEIMIASRTKSKCDDLKAKLEGKTSTKIETAALDADKVEEVIALIESYKPE 78
Query: 65 VVINVALPYQDLTIMQACLETKTHYIDTANYEHPDL-------------------AKFEY 105
V+NVALPYQDLTIM ACL T HYIDTANYE D A F+Y
Sbjct: 79 AVLNVALPYQDLTIMDACLATGVHYIDTANYEAEDTEDPEWRAIYEKRCKELGFTAYFDY 138
Query: 106 KEQWAFDRAYKEVGILGVLGAGFDPGVTNAYVAHAQKHHFDTIHTLDILDCNAGDHKRPF 165
QWA+ +KE G+ +LG+GFDPGVT+ + A+A KH+FD IH +DILDCN GDH PF
Sbjct: 139 SWQWAYQEKFKEAGLTALLGSGFDPGVTSVFSAYALKHYFDEIHYIDILDCNGGDHGYPF 198
Query: 166 ATNFNPEINLREVSSKGRYYENGKWIETKPLEIKQVWAYPQIGEMDSYLLYHEELESLVK 225
ATNFNPEINLREVS+ G Y+E+GKW+E + + IK+ + +PQ+G+ D YLL+HEE+ESL K
Sbjct: 199 ATNFNPEINLREVSAPGSYWEDGKWVEVEAMSIKREYDFPQVGQKDMYLLHHEEIESLAK 258
Query: 226 NIKGLRRARFFMTFSQNYLTHMKCLENVGMLGIKEIEHQGVKIVPIQFLKTLLPDPATLA 285
NI G++R RFFMTF Q+YLTHMKCLENVG+L I G +IVPIQFLK LLPDPA+L
Sbjct: 259 NIPGVKRIRFFMTFGQSYLTHMKCLENVGLLRTDTINFNGQEIVPIQFLKALLPDPASLG 318
Query: 286 KDTTGKTNIGCYMTGIKNNQDKTLYIYNVCDHKKCYEEVGSQAISYTTGVPAMCAAKMIC 345
T GKTNIGC TG+K+ KT+YIYNVCDH++CY EVGSQAISYTTGVPAM K++
Sbjct: 319 PRTVGKTNIGCIFTGVKDGVKKTIYIYNVCDHQECYAEVGSQAISYTTGVPAMIGTKLVM 378
Query: 346 NDTWSADHFRTGVFNIEELNTDPFMEELIKQGLPYEVIE 384
N TW + GV+N+EEL+ DPFME L + GLP+ V+E
Sbjct: 379 NGTWK----QAGVYNLEELDPDPFMEALNEYGLPWVVVE 413
>ref|NP_358414.1| (NC_003098) Conserved hypothetical protein [Streptococcus
pneumoniae R6]
gb|AAK99624.1| (AE008458) Conserved hypothetical protein [Streptococcus pneumoniae
R6]
Length = 419
Score = 459 bits (1181), Expect = e-128
Identities = 222/399 (55%), Positives = 282/399 (70%), Gaps = 23/399 (5%)
Query: 5 KMGMNRDVFKNIILASRSLDKCYAIKESMLKKGLGEIGVEQVDADDTQALVALIQKYKPK 64
K+ + + F I++ASR+ KC +K + K +I +DAD + ++ALI YKP+
Sbjct: 19 KICQDSETFTEIMIASRTKSKCDDLKAKLEGKTSTKIETAALDADKVEEVIALIGSYKPE 78
Query: 65 VVINVALPYQDLTIMQACLETKTHYIDTANYEHPDL-------------------AKFEY 105
V+NVALPYQDLTIM ACL T HYIDTANYE D A F+Y
Sbjct: 79 AVLNVALPYQDLTIMDACLATGVHYIDTANYEAEDTEDPEWRAIYEKRCKELGFTAYFDY 138
Query: 106 KEQWAFDRAYKEVGILGVLGAGFDPGVTNAYVAHAQKHHFDTIHTLDILDCNAGDHKRPF 165
QWA+ +KE G+ +LG+GFDPGVT+ + A+A KH+FD IH +DILDCN GDH PF
Sbjct: 139 SWQWAYQEKFKEAGLTALLGSGFDPGVTSVFSAYALKHYFDEIHYIDILDCNGGDHGYPF 198
Query: 166 ATNFNPEINLREVSSKGRYYENGKWIETKPLEIKQVWAYPQIGEMDSYLLYHEELESLVK 225
ATNFNPEINLREVS+ G Y+E+GKW+E + + IK+ + +PQ+G+ D YLL+HEE+ESL K
Sbjct: 199 ATNFNPEINLREVSAPGSYWEDGKWVEVEAMSIKREYDFPQVGQKDMYLLHHEEIESLAK 258
Query: 226 NIKGLRRARFFMTFSQNYLTHMKCLENVGMLGIKEIEHQGVKIVPIQFLKTLLPDPATLA 285
NI G++R RFFMTF Q+YLTHMKCLENVG+L I G +IVPIQFLK LLPDPA+L
Sbjct: 259 NIPGVKRIRFFMTFGQSYLTHMKCLENVGLLRTDTINFNGQEIVPIQFLKALLPDPASLG 318
Query: 286 KDTTGKTNIGCYMTGIKNNQDKTLYIYNVCDHKKCYEEVGSQAISYTTGVPAMCAAKMIC 345
T GKTNIGC TG+K+ +KT+YIYNVCDH++CY EVGSQAISYTTGVPAM K++
Sbjct: 319 PRTVGKTNIGCIFTGVKDGVEKTIYIYNVCDHQECYAEVGSQAISYTTGVPAMIGTKLVM 378
Query: 346 NDTWSADHFRTGVFNIEELNTDPFMEELIKQGLPYEVIE 384
N TW + GV+N+EEL+ DPFME L + GLP+ V+E
Sbjct: 379 NGTWK----QAGVYNLEELDPDPFMEALNEYGLPWVVVE 413
>ref|NP_442195.1| (NC_000911) unknown protein [Synechocystis sp. PCC 6803]
pir||S74347 hypothetical protein slr0049 - Synechocystis sp. (strain PCC 6803)
dbj|BAA10265.1| (D64001) ORF_ID:slr0049~unknown protein [Synechocystis sp. PCC
6803]
Length = 398
Score = 425 bits (1092), Expect = e-118
Identities = 207/383 (54%), Positives = 273/383 (71%), Gaps = 8/383 (2%)
Query: 1 MVAHKMGMNRDVFKNIILASRSLDKCYAIKESMLKKGLGEIGVEQVDADDTQALVALIQK 60
+VAHK D F +I+LASR++ KC I + G ++ +DA V L+Q
Sbjct: 15 VVAHKCAALED-FTDILLASRTVAKCDQIAAHI---GSPKVKTAALDAFQVSDTVKLLQD 70
Query: 61 YKPKVVINVALPYQDLTIMQACLETKTHYIDTANYEHPDLAKFEYKEQWAFDRAYKEVGI 120
+ ++INVALPYQDL +M ACLE Y+DTANYE PD+AKFEY QWA+ +K+ G+
Sbjct: 71 FGADLLINVALPYQDLVLMDACLEAGVDYLDTANYEPPDVAKFEYSWQWAYQDKFKDAGL 130
Query: 121 LGVLGAGFDPGVTNAYVAHAQKHHFDTIHTLDILDCNAGDHKRPFATNFNPEINLREVSS 180
+ +LG GFDPGVT + A+A KHHFD IH LDI+DCNAG+H + FATNFNPEIN+RE++
Sbjct: 131 MALLGCGFDPGVTGVFTAYALKHHFDEIHYLDIVDCNAGNHGQAFATNFNPEINIREITQ 190
Query: 181 KGRYYENGKWIETKPLEIKQVWAYPQIGEMDSYLLYHEELESLVKNIKGLRRARFFMTFS 240
KGRY+E+G W E PL + + YP IG+ SYLLYHEELESLVKNI L+RARF+MTFS
Sbjct: 191 KGRYHEDGVWQEIDPLSVHRDINYPHIGDRPSYLLYHEELESLVKNIPTLKRARFWMTFS 250
Query: 241 QNYLTHMKCLENVGMLGIKEIEHQGVKIVPIQFLKTLLPDPATLAKDTTGKTNIGCYMTG 300
+ Y+ H++ LE VGM I E+E+QG KIVP+QFLK +LP+PA+LA++ +G+T+IGCY+ G
Sbjct: 251 EAYINHLRVLEAVGMTRIDEVEYQGQKIVPLQFLKAVLPEPASLAENYSGQTSIGCYIKG 310
Query: 301 IKNNQDKTLYIYNVCDHKKCYEEVGSQAISYTTGVPAMCAAKMICNDTWSADHFRTGVFN 360
+K+ Q KT YIYN CDH C+ EVGSQAISYTTGVPA M+ W + GVFN
Sbjct: 311 VKDGQAKTYYIYNNCDHAVCFAEVGSQAISYTTGVPAALGGLMMVQGKWK----QAGVFN 366
Query: 361 IEELNTDPFMEELIKQGLPYEVI 383
+EE++ DPF+ +L + GLP+ +
Sbjct: 367 VEEMDPDPFLAKLGEMGLPWHEV 389
>ref|NP_294976.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||B75420 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF10819.1|AE001972_9 (AE001972) conserved hypothetical protein [Deinococcus radiodurans]
Length = 405
Score = 394 bits (1013), Expect = e-109
Identities = 192/383 (50%), Positives = 259/383 (67%), Gaps = 8/383 (2%)
Query: 1 MVAHKMGMNRDVFKNIILASRSL---DKCYAIKESMLKKGLGEIGVEQVDADDTQALVAL 57
+ A K N VF +++A+R++ DK A L + VDAD+ ALV L
Sbjct: 15 VTAKKCAQNDQVFSEVLIATRTVSKADKIVAEIHEHLPHSTCKFSTATVDADNVPALVEL 74
Query: 58 IQKYKPKVVINVALPYQDLTIMQACLETKTHYIDTANYEHPDLAKFEYKEQWAFDRAYKE 117
I+ + P++VIN+ALPYQDLTIM ACLET HY+DTANYE D+AKFEY QWA+ +KE
Sbjct: 75 IKGFGPEMVINLALPYQDLTIMDACLETGVHYLDTANYEPKDVAKFEYSWQWAYQDRFKE 134
Query: 118 VGILGVLGAGFDPGVTNAYVAHAQKHHFDTIHTLDILDCNAGDHKRPFATNFNPEINLRE 177
G++ +LG GFDPG T A AH KHHF IH LDI+DCN G+H + FATNFNPEIN+RE
Sbjct: 135 KGLMALLGCGFDPGATQAMTAHLAKHHFSEIHYLDIVDCNNGNHGKAFATNFNPEINIRE 194
Query: 178 VSSKGRYYENGKWIETKPLEIKQVWAYPQIGEMDSYLLYHEELESLVKNIKGLRRARFFM 237
+++ GRY+ENG+W+ET+PLEI Q YP + SY+LYHEELES+VK+ ++RARF+M
Sbjct: 195 ITANGRYFENGEWVETQPLEISQDIYYPNVATRKSYVLYHEELESIVKHFPTIKRARFWM 254
Query: 238 TFSQNYLTHMKCLENVGMLGIKEIEHQGVKIVPIQFLKTLLPDPATLAKDTTGKTNIGCY 297
TF + Y+ H+ LE +GM I+ IE +G +I PI+FLK +LP P +LA + TG+T IG
Sbjct: 255 TFGEAYIKHLNVLEGIGMTSIEPIEFRGQQIAPIEFLKAVLPAPESLAANYTGQTCIGVQ 314
Query: 298 MTGI-KNNQDKTLYIYNVCDHKKCYEEVGSQAISYTTGVPAMCAAKMICNDTWSADHFRT 356
G+ K+ Q ++YNV DH +CY EV +Q +SYTTGVPAM A ++ W +
Sbjct: 315 AKGLGKDGQPNVHFVYNVKDHAECYREVQAQGVSYTTGVPAMIGAMLMLQGVWK----QP 370
Query: 357 GVFNIEELNTDPFMEELIKQGLP 379
GV+N+E+L+ DPF + + GLP
Sbjct: 371 GVWNVEQLDPDPFFTAMNRWGLP 393
>ref|NP_245309.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK02456.1| (AE006073) unknown [Pasteurella multocida]
Length = 412
Score = 305 bits (780), Expect = 8e-82
Identities = 161/391 (41%), Positives = 240/391 (61%), Gaps = 14/391 (3%)
Query: 1 MVAHKMGMNRDVFKNIILASRSLDKCYAIKESMLKKGLGEIGVE----QVDADDTQALVA 56
+V HK + DV I +ASR ++KC AI +S+ +KG ++ ++D D +A A
Sbjct: 16 VVVHKCAQHNDVLGKISIASRKIEKCRAIADSVAEKGNFKVPATIDCFEIDVFDIEATKA 75
Query: 57 LIQKYKPKVVINVALPYQDLTIMQACLETKTHYIDTANYEHP----DLAKFEYKEQWAFD 112
LIQK + ++VINV + +++++QAC+ET YIDTA +E P + + +W
Sbjct: 76 LIQKTESQIVINVGPSFVNMSVLQACIETGAAYIDTAMHEDPSKVCETPPWYANYEWKRR 135
Query: 113 RAYKEVGILGVLGAGFDPGVTNAYVAHAQKHHFDTIHTLDILDCNAGDHKRPFATNFNPE 172
K+ I +L AGFDPGV NAY A+A FD++ ++DI+D NAG H R FATNF+PE
Sbjct: 136 ELCKQNNITAILSAGFDPGVVNAYAAYAVNDEFDSVESIDIIDINAGSHGRYFATNFDPE 195
Query: 173 INLREVSSKGRYYENGKWIETKPLEIKQVWAYPQIGEMDSYLLYHEELESLVKNIKGLRR 232
+N RE + ++N +W+ K EIK+ P +G +SYL HEEL SL ++ +
Sbjct: 196 VNFREFTGTVWSWQNSQWVSNKMFEIKRTDDLPIVGMQNSYLTGHEELHSLSTHL-NVPN 254
Query: 233 ARFFMTFSQNYLTHMKCLENVGMLGIKEIE-HQGVKIVPIQFLKTLLPDPATLAKDTTGK 291
RF+M F +Y+ L+N+G+L + ++ +GV+++PI+ +K +LPDPA+LA + TGK
Sbjct: 255 IRFWMGFGDHYINVFNVLKNLGLLSVHPVKTAEGVEVIPIKVVKAVLPDPASLAPNYTGK 314
Query: 292 TNIGCYMTGIKNNQDKTLYIYNVCDHKKCYEEVGSQAISYTTGVPAMCAAKMICNDTWSA 351
T IG + G K+ +DK ++IYNV DHK+ YEEVGSQ ISYT GVPA+ AA +I W
Sbjct: 315 TCIGNLVKGKKDGKDKEIFIYNVADHKEAYEEVGSQGISYTAGVPAVAAALLIATGEWDV 374
Query: 352 DHFRTGVFNIEELNTDPFMEELIKQGLPYEV 382
R N+E+L+ PF+ L K GLP +
Sbjct: 375 GEMR----NVEQLDPKPFLNLLNKIGLPNRI 401
>ref|NP_231263.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||A82177 conserved hypothetical protein VC1624 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF94777.1| (AE004240) conserved hypothetical protein [Vibrio cholerae]
Length = 414
Score = 286 bits (733), Expect = 2e-76
Identities = 160/402 (39%), Positives = 236/402 (57%), Gaps = 31/402 (7%)
Query: 1 MVAHKMGMNRDVFKNIILASRSLDKCYAIKESM-----LKKGLGEIGVEQVDADDTQALV 55
+VAHK N DV +I +ASRS+ KC I ES+ LK ++ QV+ADD ++LV
Sbjct: 14 VVAHKAAQNNDVLGDITIASRSIAKCEKIIESIKGKNNLKDSSKKLEARQVNADDIESLV 73
Query: 56 ALIQKYKPKVVINVALPYQDLTIMQACLETKTHYIDTA--------NYEHPDLAKFEYKE 107
LI + KP +VIN P+ ++ IM+AC + K Y+DT+ + P+ Y
Sbjct: 74 KLINEVKPDLVINAGPPWVNVAIMEACYQAKVSYLDTSVSVDLCSKGQQVPEA----YDA 129
Query: 108 QWAFDRAYKEVGILGVLGAGFDPGVTNAYVAHAQKHHFDTIHTLDILDCNAGDHKRPFAT 167
QWAF +K+ GI +L AGFDPGV + + A+A K+ FD I T+D+LD NAGDH + FAT
Sbjct: 130 QWAFRDKFKQAGITAILSAGFDPGVVSVFAAYAAKYLFDEIDTIDVLDINAGDHGKKFAT 189
Query: 168 NFNPEINLREVSSKGRYYENGKW----IETKPLEIKQVWAYPQIGEMDSYLLYHEELESL 223
NF+PE NL E+ Y++ G+W T+ LE + +P+ G+ Y + H+EL SL
Sbjct: 190 NFDPETNLLEIQGDSIYWDAGEWKRVPCHTRMLE----FDFPKCGKFKVYSMSHDELRSL 245
Query: 224 VKNIKGLRRARFFMTFSQNYLTHMKCLENVGMLGIKEIEHQ-GVKIVPIQFLKTLLPDPA 282
K +R F+M F YL + + ++G+L + + Q G + P+Q LK +LPDP
Sbjct: 246 -KEFIPAKRIEFWMGFGDRYLNYFNMMRDIGLLSPEPLTLQDGTVVKPLQVLKAMLPDPT 304
Query: 283 TLAKDTTGKTNIGCYMTGIKNNQDKTLYIYNVCDHKKCYEEVGSQAISYTTGVPAMCAAK 342
+LA G T IG ++ G K+ + ++++IYN DH+ Y +V QAI+YTTGVPA+ AA
Sbjct: 305 SLAPGYKGLTCIGTWVQGKKDGKARSVFIYNHADHEVAYHDVEHQAIAYTTGVPAITAAL 364
Query: 343 MICNDTWSADHFRTGVFNIEELNTDPFMEELIKQGLPYEVIE 384
W+ GVFN+E+LN DPF+E + GL ++V+E
Sbjct: 365 QFFRGEWA----EPGVFNMEQLNPDPFLETMPSIGLGWDVME 402
>ref|NP_356480.1| (NC_003063) AGR_L_1365p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_534654.1| (NC_003305) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK89265.1| (AE008267) AGR_L_1365p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL44970.1| (AE009346) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 412
Score = 285 bits (729), Expect = 6e-76
Identities = 155/391 (39%), Positives = 238/391 (60%), Gaps = 14/391 (3%)
Query: 1 MVAHKMGMNRDVFKNIILASRSLDKCYAIKESMLKKGLGEIGVE----QVDADDTQALVA 56
+VAHK N DV +I +ASR+L KC I ES+ +K + V+ +DA D +A A
Sbjct: 16 VVAHKCAQNSDVLGDIHIASRTLGKCRKIVESVREKKSLKTDVKLEAHALDAMDIEATKA 75
Query: 57 LIQKYKPKVVINVALPYQDLTIMQACLETKTHYIDTANYEHP----DLAKFEYKEQWAFD 112
LI K ++VINV + ++++++AC++T Y+DTA +E P + + +W
Sbjct: 76 LITKTGVEIVINVGSSFVNMSVLRACMDTGVAYMDTAIHEDPTKICEAPPWYGNYEWKRA 135
Query: 113 RAYKEVGILGVLGAGFDPGVTNAYVAHAQKHHFDTIHTLDILDCNAGDHKRPFATNFNPE 172
+ KE G+ +LG GFDPGV NAY A+ +FD + ++DI+D NAG H R F+TNF+PE
Sbjct: 136 QECKEKGVTAILGVGFDPGVVNAYARLAKDEYFDKVTSVDIVDINAGSHGRWFSTNFDPE 195
Query: 173 INLREVSSKGRYYENGKWIETKPLEIKQVWAYPQIGEMDSYLLYHEELESLVKNIKGLRR 232
IN RE + ++ G+W + E+ Q + P +G+ +Y+ H+E+ SL KN+ G
Sbjct: 196 INFREFTGVVYSWQKGEWQTNQMFEVGQEFDLPVVGKQKAYMTGHDEVHSLSKNMDG-AD 254
Query: 233 ARFFMTFSQNYLTHMKCLENVGMLGIKEIE-HQGVKIVPIQFLKTLLPDPATLAKDTTGK 291
RF+M F +Y+ L+N+G+L K ++ +G+++VP++ +K +LPDP++LA D GK
Sbjct: 255 VRFWMGFGDHYINVFTVLKNLGLLSEKPVKTAEGLEVVPLKVVKAVLPDPSSLAPDYVGK 314
Query: 292 TNIGCYMTGIKNNQDKTLYIYNVCDHKKCYEEVGSQAISYTTGVPAMCAAKMICNDTWSA 351
T IG + GIK+ +++ ++IYNV DHK+ YEEVGSQ ISYT GVP + AA +I W
Sbjct: 315 TCIGDIVKGIKDGKEREVFIYNVADHKEAYEEVGSQGISYTAGVPPVAAAMLIATGEWDV 374
Query: 352 DHFRTGVFNIEELNTDPFMEELIKQGLPYEV 382
+ N+EEL PF+ L K GLP +
Sbjct: 375 KQ----MANVEELPPKPFLNILNKIGLPNRI 401
>ref|NP_540505.1| (NC_003317) carboxynorspermidine dehydrogenase [Brucella
melitensis]
gb|AAL52769.1| (AE009594) carboxynorspermidine dehydrogenase [Brucella melitensis]
Length = 413
Score = 280 bits (715), Expect = 3e-74
Identities = 153/391 (39%), Positives = 236/391 (60%), Gaps = 14/391 (3%)
Query: 1 MVAHKMGMNRDVFKNIILASRSLDKCYAIKESML-KKGLG---EIGVEQVDADDTQALVA 56
+VAHK N DV +I +ASR+++KC I +S+ KK L ++ +DA D +A A
Sbjct: 16 VVAHKCAQNSDVLGDIHIASRTVEKCRRIIDSVREKKSLKTEVKLEAHALDAMDVEATKA 75
Query: 57 LIQKYKPKVVINVALPYQDLTIMQACLETKTHYIDTANYEHP----DLAKFEYKEQWAFD 112
LI+K ++VINV + ++++++AC++T Y+DTA +E P + + +W
Sbjct: 76 LIRKTGVQIVINVGSAFLNMSVLRACIDTGVAYMDTAIHEDPKKICETPPWYGNYEWKHL 135
Query: 113 RAYKEVGILGVLGAGFDPGVTNAYVAHAQKHHFDTIHTLDILDCNAGDHKRPFATNFNPE 172
+ +E GI +LG GFDPGV NAY A + D + ++DI+D NAG H R F+TNF+PE
Sbjct: 136 KECEEKGITAILGIGFDPGVVNAYARLAADDYLDEVKSIDIVDINAGSHGRWFSTNFDPE 195
Query: 173 INLREVSSKGRYYENGKWIETKPLEIKQVWAYPQIGEMDSYLLYHEELESLVKNIKGLRR 232
IN RE + ++NG+W K E+ Q + P +G +Y+ H+E+ SL KN
Sbjct: 196 INFREFTGTVYSWQNGQWQSNKMFEVGQTFDLPVVGPSKAYMTGHDEVHSLSKNYPN-AD 254
Query: 233 ARFFMTFSQNYLTHMKCLENVGMLGIKEIE-HQGVKIVPIQFLKTLLPDPATLAKDTTGK 291
RF+M F +Y+ L+N+G+L + ++ +G+++VP++ +K +LPDPA+LA D TGK
Sbjct: 255 VRFWMGFGDHYINVFTVLKNLGLLSEQPVKTAEGLEVVPLKVVKAVLPDPASLAPDYTGK 314
Query: 292 TNIGCYMTGIKNNQDKTLYIYNVCDHKKCYEEVGSQAISYTTGVPAMCAAKMICNDTWSA 351
T IG ++ G K+ ++K ++IYNV DHK Y EVGSQ ISYT GVP + AA +I + W
Sbjct: 315 TCIGDFVKGTKDGKEKEVFIYNVADHKDAYNEVGSQGISYTAGVPPVAAAILIASGEWDV 374
Query: 352 DHFRTGVFNIEELNTDPFMEELIKQGLPYEV 382
+ N+EELN F+ L + GLP +
Sbjct: 375 KK----MVNVEELNPKSFLHILNQIGLPSRI 401
>ref|NP_438089.1| (NC_003078) conserved hypothetical protein [Sinorhizobium meliloti]
emb|CAC49949.1| (AL603647) conserved hypothetical protein [Sinorhizobium meliloti]
Length = 413
Score = 278 bits (712), Expect = 6e-74
Identities = 152/391 (38%), Positives = 238/391 (59%), Gaps = 14/391 (3%)
Query: 1 MVAHKMGMNRDVFKNIILASRSLDKCYAIKESML-KKGLG---EIGVEQVDADDTQALVA 56
+VAHK N DV +I +ASR++DKC I ES+ KK L ++ +DA D +A A
Sbjct: 16 VVAHKCAQNSDVLGDIHIASRTVDKCRKIVESVREKKSLKTEVKLEAHALDALDVEATKA 75
Query: 57 LIQKYKPKVVINVALPYQDLTIMQACLETKTHYIDTANYEHP----DLAKFEYKEQWAFD 112
LI ++VINV + ++++++AC++T Y+DTA +E P + + +W
Sbjct: 76 LIVSTGSQIVINVGSAFVNMSVLRACMDTGVAYMDTAIHEEPNKICETPPWYGNYEWKRA 135
Query: 113 RAYKEVGILGVLGAGFDPGVTNAYVAHAQKHHFDTIHTLDILDCNAGDHKRPFATNFNPE 172
KE GI +LG GFDPGV NAY A+ +FD I +DI+D NAG+H + FATNF+PE
Sbjct: 136 AECKEKGITAILGVGFDPGVVNAYARLAKDEYFDKITDVDIVDINAGNHGKYFATNFDPE 195
Query: 173 INLREVSSKGRYYENGKWIETKPLEIKQVWAYPQIGEMDSYLLYHEELESLVKNIKGLRR 232
IN RE + ++ G W + E+ + + P +G+ +Y+ H+E+ SL KN+ G
Sbjct: 196 INFREFTGVVYSWQKGAWQTNRMFEVGKEFDLPVVGKRQAYMTGHDEVHSLSKNMDG-AD 254
Query: 233 ARFFMTFSQNYLTHMKCLENVGMLGIKEIE-HQGVKIVPIQFLKTLLPDPATLAKDTTGK 291
RF+M F +Y+ L+N+G+L + ++ +G+++VP++ +K +LPDPA+LA GK
Sbjct: 255 VRFWMGFGDHYINVFTVLKNLGLLSEQPVKTAEGLEVVPLKVVKAVLPDPASLAPGYEGK 314
Query: 292 TNIGCYMTGIKNNQDKTLYIYNVCDHKKCYEEVGSQAISYTTGVPAMCAAKMICNDTWSA 351
T IG ++ G+K+ +++ ++IYNV DH++ YEEVGSQ ISYT GVP + AA +I + W
Sbjct: 315 TCIGDFVKGLKDGREREVFIYNVADHRQAYEEVGSQGISYTAGVPPVAAAMLIASGEWDV 374
Query: 352 DHFRTGVFNIEELNTDPFMEELIKQGLPYEV 382
+ N+EEL PF++ L + GLP +
Sbjct: 375 RQ----MANVEELPPRPFLDILNRIGLPTRI 401
>ref|NP_631684.1| (NC_003888) putative ATP binding protein [Streptomyces coelicolor
A3(2)]
emb|CAC16977.1| (AL450350) putative ATP binding protein [Streptomyces coelicolor
A3(2)]
Length = 407
Score = 129 bits (323), Expect = 7e-29
Identities = 91/356 (25%), Positives = 166/356 (46%), Gaps = 20/356 (5%)
Query: 45 QVDADDTQALVALIQKYKPKVVINVALPYQDLTIMQACLETKTHYIDTANYEHPDLAKFE 104
++DA D A+ + +++ +++N P + + +A L HY+D A A
Sbjct: 56 RLDASDEAAVRKALVEHRCDLLLNATDPRFVMPLFRAALAAGVHYVDMAMSLSAPHASRP 115
Query: 105 YKE--------QWAFDRAYKEVGILGVLGAGFDPGVTNAYVAHAQKHHFDTIHTLDILD- 155
Y+E Q+ + E G + ++G G +PG+++ + +A FD I + + D
Sbjct: 116 YEECGVKLGDAQFELAGRWAESGRMALVGVGVEPGLSDVFARYAADELFDEIDEIGVRDG 175
Query: 156 CNAGDHKRPFATNFNPEINLREVSSKGRYYENGK-WIETKPLEIKQVWAYPQ-IGEMDSY 213
+ FA +F+ + E + YE + W T P +V+ +P+ IG ++
Sbjct: 176 ADLTVEGYEFAPSFSIWTTIEECLNPPVVYEKDRGWFTTAPFSEPEVFDFPEGIGPVECV 235
Query: 214 LLYHEELESLVKNIKGLRRARFFMTFSQNYLTHMKCLENVGMLGIKEIEHQG----VKIV 269
+ HEE+ L+ RR F ++ +K L +G+ + G V++
Sbjct: 236 NVEHEEV-LLIPRWLDARRVTFKYGLGDAFIARLKTLHELGLDSTARVTVPGEDGPVRVS 294
Query: 270 PIQFLKTLLPDPATLAKDTTGKTNIGCYMTGIKNNQDKTLYIYNVCDHKKCYEEVGSQAI 329
P + LPDPATL + TGKT G ++ G K + + +Y+Y+V D++ E GSQA+
Sbjct: 295 PRDVVAACLPDPATLGERMTGKTCAGTWVRGTKGGEAREVYLYHVVDNQWSMREYGSQAV 354
Query: 330 SYTTGVPAMCAAKMICNDTWSADHFRTGVFNIEELNTDPFMEELIKQGLPYEVIER 385
+ T V + A +++ WS + GV E L PF++ L + G P+ + E+
Sbjct: 355 VWQTAVNPVVALELLSTGAWSGE----GVLGPEALPAQPFLDLLTEYGSPWGLREQ 406
>ref|NP_070417.1| (NC_000917) conserved hypothetical protein [Archaeoglobus fulgidus]
pir||C69448 conserved hypothetical protein AF1588 - Archaeoglobus fulgidus
gb|AAB89660.1| (AE000993) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 408
Score = 66.2 bits (160), Expect = 6e-10
Identities = 79/342 (23%), Positives = 139/342 (40%), Gaps = 29/342 (8%)
Query: 12 VFKNIILASRSLDKCYAIKESMLKKGLGEIGVEQVDADDTQALVALIQKYKPKVVINVAL 71
+F + LA L K A+K + L + L E DA + + ALI+ + VV+N
Sbjct: 24 IFSELYLAD--LSKENALKAANLCQ-LDESKAMTCDAGNVDGVSALIKDFD--VVLNCVG 78
Query: 72 PYQDL--TIMQACLETKTHYIDTANYEHPDLAKFEYKEQWAFDRAYKEVGILGVLGAGFD 129
P+ + I++A ++ +Y+D + + EQ D ++ GI V+G G
Sbjct: 79 PFYEYGPKILKAAIKAGVNYVDICDDYDATV------EQLKMDEEARKAGIKAVIGMGSS 132
Query: 130 PGVTNAYVAHAQKHHFDTIHTLDILDCNAGDHKRPFATNFNPEINLREVSSK---GRYYE 186
PG+ N +A H FD +DI + G+ A I+ E+ ++
Sbjct: 133 PGLANLLAKYAALHLFDETEAIDIYHAHGGEATEGAAV-VKHRIHSMEMEIPVFLDGEFK 191
Query: 187 NGKWIETKPLEIKQVWAYPQIGEMDSYLLYHEELESLVKNIKGLRR-ARFFMTFSQNYLT 245
K E +++ + +P IG+ Y H E +L K I G+RR + Y
Sbjct: 192 TVKLFEESGKALEEEFEFPLIGKYWVYAYPHPETITLPKYINGVRRVTNLGLVLPPEYAE 251
Query: 246 HMKCLENVGMLGIKEIEHQGVKIVPIQF-LKTLLPDPATLAKDTTGKTNIGCYMTGIKNN 304
+K L + M I+ + P++F + +L L K +GC +K
Sbjct: 252 LIKTLVRISMTSSPPIKVGEQIVDPLEFAVAFILFKRGELLKKAGITEPMGCVTVAVKGK 311
Query: 305 QDKTLYIYNVCDHKKCYEEVGSQAISY--TTGVPAMCAAKMI 344
+ + K+ Y + S+ + TG+PA A ++
Sbjct: 312 KGG--------ETKRYYFSLASRGMGMGEGTGIPAAIGAMLM 345
>ref|NP_519259.1| (NC_003295) PUTATIVE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
emb|CAD14840.1| (AL646062) PUTATIVE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
Length = 375
Score = 48.5 bits (114), Expect = 1e-04
Identities = 34/126 (26%), Positives = 59/126 (45%), Gaps = 9/126 (7%)
Query: 16 IILASRSLDKCYAIKESMLKKGLGEIGVEQVDADDTQALVALIQKYKPKVVINVALPYQ- 74
I +A RSLD+ A+ E++ + +D T L ++ P ++I+ + P+Q
Sbjct: 36 ITVAGRSLDRATALVETLRPTARARLHAAALDIS-TDTLPRQLRALAPDMLIHASGPFQG 94
Query: 75 -DLTIMQACLETKTHYIDTANYEHPDLAKFEYKEQWAFDRAYKEVGILGVLGAGFDPGVT 133
D + QAC+ HYID A+ + ++ D A ++ G+L V GA P ++
Sbjct: 95 QDYRVAQACIAAGVHYIDLAD------GRAFVQDISTLDAAARQAGVLVVSGASSVPALS 148
Query: 134 NAYVAH 139
A H
Sbjct: 149 GAAADH 154
>ref|NP_649517.1| (NM_141260) CG2604 gene product [Drosophila melanogaster]
gb|AAF52062.1| (AE003603) CG2604 gene product [alt 2] [Drosophila melanogaster]
gb|AAF52063.1| (AE003603) CG2604 gene product [alt 1] [Drosophila melanogaster]
gb|AAL68073.1| (AY075205) AT14148p [Drosophila melanogaster]
Length = 430
Score = 48.5 bits (114), Expect = 1e-04
Identities = 34/142 (23%), Positives = 73/142 (50%), Gaps = 16/142 (11%)
Query: 18 LASRSLDKCYAIKESM---LKKGLGEIGVEQVDADDTQALVALIQKYKPKVVINVALPYQ 74
+A R+ +K A+ + M KK L ++ + D +D +L+ + +K + +V+N A PY+
Sbjct: 36 IAGRNREKLEAVLKEMGAKAKKDLSQVPIFIADVNDQASLLEMAKKCR--IVVNTAGPYR 93
Query: 75 --DLTIMQACLETKTHYIDTANYEHPDLAKFEYKE--QWAFDRAYKEVGILGVLGAGFDP 130
+++ C+E+ TH++D + + +Y E Q +D+ +E G+ V GFD
Sbjct: 94 FHGENVVKCCIESGTHHVDVS-------GEPQYMETMQLRYDQLAREKGVYVVSACGFDS 146
Query: 131 GVTNAYVAHAQKHHFDTIHTLD 152
+ V +K+ +++++
Sbjct: 147 IPADMGVVFVEKNFDGVVNSVE 168
>gb|AAK83327.1| (AF368901) chimeric spermidine synthase/saccharopine dehydrogenase
[Filobasidiella neoformans]
Length = 748
Score = 43.9 bits (102), Expect = 0.003
Identities = 45/244 (18%), Positives = 98/244 (39%), Gaps = 29/244 (11%)
Query: 50 DTQALVALIQKYKPKVVINVALPYQ-DLTIMQACLETKTHYIDTANYEHPDLAKFEYKEQ 108
D + AL Q K V+ +PY +M+A LE K H + T +Y +P + E K
Sbjct: 356 DVSSADALRQAIKGHDVVVSLIPYTYHAQVMEAALEEKVHVV-TTSYVNPQMRALEQK-- 412
Query: 109 WAFDRAYKEVGILGVLGAGFDPGVTNAYVAHAQKHHFDTIHTL------------DILDC 156
+K+ G++ G DPGV + + FD + +++
Sbjct: 413 ------FKDAGLICFNEIGVDPGVDHLWAIKV----FDEVKKAGGKIKSFYSFCGGLVEP 462
Query: 157 NAGDHKRPFATNFNPEINLREVSSKGRYYENGKWIETKPLEIKQVWAYPQIGEMDSYLLY 216
A D+ + +++P L +++ G+Y ++GK +E ++ + + Y
Sbjct: 463 AAADNALGYKFSWSPVGVLMALNNDGKYLKDGKVVEVAGKDLMSTAKPYYFTPAYNLVAY 522
Query: 217 HEELESLVKNIKGLRRARFFMTFSQNYLTHMKCL---ENVGMLGIKEIEHQGVKIVPIQF 273
++ + GL + + Y + + + +G++ ++++ PI +
Sbjct: 523 PNRDSTVFREFYGLEGVQNLCRGTMRYAGFCEVITAWKEIGLMSDAQVDYLAQGAAPITW 582
Query: 274 LKTL 277
+K +
Sbjct: 583 IKVV 586
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.137 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 257,411,832
Number of Sequences: 1026957
Number of extensions: 11194105
Number of successful extensions: 21570
Number of sequences better than 1.0e-02: 18
Number of HSP's better than 0.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 21513
Number of HSP's gapped (non-prelim): 18
length of query: 385
length of database: 324,149,939
effective HSP length: 123
effective length of query: 262
effective length of database: 197,834,228
effective search space: 51832567736
effective search space used: 51832567736
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 98 (42.4 bits)