BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646119|ref|NP_208301.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(117 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208301.1| (NC_000915) conserved hypothetical protein... 229 4e-60
ref|NP_224121.1| (NC_000921) DIHYDRONEOPTERIN ALDOLASE [Hel... 197 2e-50
ref|NP_281547.1| (NC_002163) hypothetical protein Cj0356c [... 57 5e-08
>ref|NP_208301.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||F64708 conserved hypothetical protein HP1510 - Helicobacter pylori
(strain 26695)
gb|AAD08552.1| (AE000649) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 117
Score = 229 bits (584), Expect = 4e-60
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MKTKQGVHIHNLVFEAILGILEFERLKPQKISVNLDLFYTQLPNKVYLDYMEIQELIQKM 60
MKTKQGVHIHNLVFEAILGILEFERLKPQKISVNLDLFYTQLPNKVYLDYMEIQELIQKM
Sbjct: 1 MKTKQGVHIHNLVFEAILGILEFERLKPQKISVNLDLFYTQLPNKVYLDYMEIQELIQKM 60
Query: 61 MQENQYLLIEDALKDLSHALKTRYKEITELYLKISKLEISPNSQVGASVKIRYESNL 117
MQENQYLLIEDALKDLSHALKTRYKEITELYLKISKLEISPNSQVGASVKIRYESNL
Sbjct: 61 MQENQYLLIEDALKDLSHALKTRYKEITELYLKISKLEISPNSQVGASVKIRYESNL 117
>ref|NP_224121.1| (NC_000921) DIHYDRONEOPTERIN ALDOLASE [Helicobacter pylori J99]
pir||C71811 dihydroneopterin aldolase - Helicobacter pylori (strain J99)
gb|AAD06984.1| (AE001562) DIHYDRONEOPTERIN ALDOLASE [Helicobacter pylori J99]
Length = 117
Score = 197 bits (501), Expect = 2e-50
Identities = 99/117 (84%), Positives = 108/117 (91%)
Query: 1 MKTKQGVHIHNLVFEAILGILEFERLKPQKISVNLDLFYTQLPNKVYLDYMEIQELIQKM 60
MKTKQ VHIHNLVFE ILGILEFERLKPQKISV+LDLFYT+LPNK YLDYMEIQE+IQ
Sbjct: 1 MKTKQAVHIHNLVFETILGILEFERLKPQKISVDLDLFYTELPNKAYLDYMEIQEIIQNT 60
Query: 61 MQENQYLLIEDALKDLSHALKTRYKEITELYLKISKLEISPNSQVGASVKIRYESNL 117
M+E QYLLIEDALKDLS LKTRYK+I+EL+LKISKLEISPNSQVGAS+KI YE+NL
Sbjct: 61 MREKQYLLIEDALKDLSQILKTRYKKISELFLKISKLEISPNSQVGASMKIYYETNL 117
>ref|NP_281547.1| (NC_002163) hypothetical protein Cj0356c [Campylobacter jejuni]
pir||C81378 hypothetical protein Cj0356c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB74193.1| (AL139075) hypothetical protein Cj0356c [Campylobacter jejuni]
Length = 105
Score = 56.6 bits (135), Expect = 5e-08
Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 5/100 (5%)
Query: 14 FEAILGILEFERLKPQKISVNLDLFYTQLPNKVYLDYMEIQELIQKMMQENQYLLIEDAL 73
F+ I+GIL+FER K QKI + L + +L+Y E+ I+ ++ ++ +E++L
Sbjct: 11 FKCIIGILDFERRKKQKIIIKL-----KAKANEFLNYAEVITKIKTWYKKEEFYTLEESL 65
Query: 74 KDLSHALKTRYKEITELYLKISKLEISPNSQVGASVKIRY 113
+S LK + +T L +KI K I N+ VG +K +Y
Sbjct: 66 DFVSLNLKKDFPNLTNLNIKIFKPHIIKNATVGVKLKKKY 105
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.318 0.137 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,266,850
Number of Sequences: 1026957
Number of extensions: 2334350
Number of successful extensions: 8667
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8665
Number of HSP's gapped (non-prelim): 3
length of query: 117
length of database: 324,149,939
effective HSP length: 93
effective length of query: 24
effective length of database: 228,642,938
effective search space: 5487430512
effective search space used: 5487430512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 90 (39.3 bits)