BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646120|ref|NP_208302.1| hypothetical protein
[Helicobacter pylori 26695]
(108 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208302.1| (NC_000915) hypothetical protein [Helicoba... 216 4e-56
ref|NP_224122.1| (NC_000921) putative [Helicobacter pylori ... 197 1e-50
ref|NP_224123.1| (NC_000921) putative IRON-REGULATED OUTER ... 49 1e-05
ref|NP_208303.1| (NC_000915) iron-regulated outer membrane ... 49 1e-05
ref|NP_207708.1| (NC_000915) iron-regulated outer membrane ... 46 7e-05
ref|NP_223569.1| (NC_000921) putative IRON-REGULATED OUTER ... 45 2e-04
ref|NP_223528.1| (NC_000921) putative IRON-REGULATED OUTER ... 43 8e-04
gb|AAB88791.1| (AF015886) TonB-dependent receptor homolog [... 43 8e-04
ref|NP_207670.1| (NC_000915) iron-regulated outer membrane ... 43 8e-04
>ref|NP_208302.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64708 hypothetical protein HP1511 - Helicobacter pylori (strain 26695)
gb|AAD08557.1| (AE000649) H. pylori predicted coding region HP1511 [Helicobacter
pylori 26695]
Length = 108
Score = 216 bits (550), Expect = 4e-56
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 1 MKAIFSLFFLLIVLKANPINPLLEPLYFPSYAQFLNLAPHFVIKKKRAYRPFQWGNTIII 60
MKAIFSLFFLLIVLKANPINPLLEPLYFPSYAQFLNLAPHFVIKKKRAYRPFQWGNTIII
Sbjct: 1 MKAIFSLFFLLIVLKANPINPLLEPLYFPSYAQFLNLAPHFVIKKKRAYRPFQWGNTIII 60
Query: 61 KRHDLEERQSNQPSDIFRQNAEINVSSQTFLKGMSNASSRTVLDSAAQ 108
KRHDLEERQSNQPSDIFRQNAEINVSSQTFLKGMSNASSRTVLDSAAQ
Sbjct: 61 KRHDLEERQSNQPSDIFRQNAEINVSSQTFLKGMSNASSRTVLDSAAQ 108
>ref|NP_224122.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71811 hypothetical protein jhp1404 - Helicobacter pylori (strain J99)
gb|AAD06985.1| (AE001562) putative [Helicobacter pylori J99]
Length = 108
Score = 197 bits (502), Expect = 1e-50
Identities = 97/108 (89%), Positives = 103/108 (94%)
Query: 1 MKAIFSLFFLLIVLKANPINPLLEPLYFPSYAQFLNLAPHFVIKKKRAYRPFQWGNTIII 60
MK IFSLFFLLIVLKA+PINPLLEPLYFPSY QFL+L PHFVIKKKRAYRPFQWGNTIII
Sbjct: 1 MKPIFSLFFLLIVLKAHPINPLLEPLYFPSYTQFLDLEPHFVIKKKRAYRPFQWGNTIII 60
Query: 61 KRHDLEERQSNQPSDIFRQNAEINVSSQTFLKGMSNASSRTVLDSAAQ 108
KRHDLEERQSNQPSDIFRQNAEINVSSQTFL+G+S+ASSR V+DS AQ
Sbjct: 61 KRHDLEERQSNQPSDIFRQNAEINVSSQTFLRGISSASSRIVIDSVAQ 108
>ref|NP_224123.1| (NC_000921) putative IRON-REGULATED OUTER MEMBRANE PROTEIN
[Helicobacter pylori J99]
pir||E71811 probable iron-regulated outer membrane protein - Helicobacter
pylori (strain J99)
gb|AAD06986.1| (AE001562) putative IRON-REGULATED OUTER MEMBRANE PROTEIN
[Helicobacter pylori J99]
Length = 879
Score = 48.9 bits (115), Expect = 1e-05
Identities = 24/65 (36%), Positives = 40/65 (60%), Gaps = 6/65 (9%)
Query: 50 RPFQWGNTIIIKRHDLEERQSNQPSDIFRQNAEINVSS------QTFLKGMSNASSRTVL 103
R F++ N + I R +L++RQSNQ DIFR A++NV+S + +++G+ + R +
Sbjct: 37 RTFEYNNKMYIDRKELQQRQSNQIRDIFRTRADVNVASGGLMAQKIYVRGIESRLLRVTI 96
Query: 104 DSAAQ 108
D AQ
Sbjct: 97 DGVAQ 101
>ref|NP_208303.1| (NC_000915) iron-regulated outer membrane protein (frpB)
[Helicobacter pylori 26695]
pir||H64708 iron-regulated outer membrane protein - Helicobacter pylori
(strain 26695)
gb|AAD08553.1| (AE000649) iron-regulated outer membrane protein (frpB)
[Helicobacter pylori 26695]
Length = 877
Score = 48.9 bits (115), Expect = 1e-05
Identities = 24/65 (36%), Positives = 40/65 (60%), Gaps = 6/65 (9%)
Query: 50 RPFQWGNTIIIKRHDLEERQSNQPSDIFRQNAEINVSS------QTFLKGMSNASSRTVL 103
R F++ N + I R +L++RQSNQ DIFR A++NV+S + +++G+ + R +
Sbjct: 37 RTFEYNNKMYIDRKELQQRQSNQIRDIFRTRADVNVASGGLMAQKIYVRGIESRLLRVTI 96
Query: 104 DSAAQ 108
D AQ
Sbjct: 97 DGVAQ 101
>ref|NP_207708.1| (NC_000915) iron-regulated outer membrane protein (frpB)
[Helicobacter pylori 26695]
pir||D64634 iron-regulated outer membrane protein - Helicobacter pylori
(strain 26695)
gb|AAD07962.1| (AE000601) iron-regulated outer membrane protein (frpB)
[Helicobacter pylori 26695]
Length = 249
Score = 46.2 bits (108), Expect = 7e-05
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 47 RAYRPFQWGNTIIIKRHDLEERQSNQPSDIFRQNAEINV------SSQTFLKGMSNASSR 100
+A + F + N I +LE RQ+NQ SD+FR+N INV + + +++G+ + +R
Sbjct: 55 QAAKIFNYNNQTTISSKELERRQANQISDMFRRNPNINVGGGAVIAQKIYVRGIEDRLAR 114
Query: 101 TVLDSAAQ 108
+D AAQ
Sbjct: 115 VTVDGAAQ 122
>ref|NP_223569.1| (NC_000921) putative IRON-REGULATED OUTER MEMBRANE PROTEIN
[Helicobacter pylori J99]
pir||F71880 probable iron-regulated outer membrane protein - Helicobacter
pylori (strain J99)
gb|AAD06429.1| (AE001514) putative IRON-REGULATED OUTER MEMBRANE PROTEIN
[Helicobacter pylori J99]
Length = 815
Score = 44.7 bits (104), Expect = 2e-04
Identities = 23/68 (33%), Positives = 39/68 (56%), Gaps = 6/68 (8%)
Query: 47 RAYRPFQWGNTIIIKRHDLEERQSNQPSDIFRQNAEINV------SSQTFLKGMSNASSR 100
+A + F + N I +LE RQ+NQ SD+FR+N INV + + +++G+ + +R
Sbjct: 56 QAAKIFNYNNQTTISSKELERRQANQISDMFRRNPNINVGGGAVIAQKIYVRGIEDRLAR 115
Query: 101 TVLDSAAQ 108
+D AQ
Sbjct: 116 VTVDGVAQ 123
>ref|NP_223528.1| (NC_000921) putative IRON-REGULATED OUTER MEMBRANE PROTEIN
[Helicobacter pylori J99]
pir||G71885 probable iron-regulated outer membrane protein - Helicobacter
pylori (strain J99)
gb|AAD06392.1| (AE001510) putative IRON-REGULATED OUTER MEMBRANE PROTEIN
[Helicobacter pylori J99]
Length = 791
Score = 42.7 bits (99), Expect = 8e-04
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 47 RAYRPFQWGNTIIIKRHDLEERQSNQPSDIFRQNAEINV------SSQTFLKGMSNASSR 100
+A R F + N + +L++RQSN+ D+FR N ++NV + +++G+ + R
Sbjct: 35 QAKRIFTYNNEFKVTSKELDQRQSNEVKDLFRTNPDVNVGGGSVMGQKIYVRGIEDRLLR 94
Query: 101 TVLDSAAQ 108
+D AAQ
Sbjct: 95 VTVDGAAQ 102
>gb|AAB88791.1| (AF015886) TonB-dependent receptor homolog [Helicobacter pylori]
Length = 707
Score = 42.7 bits (99), Expect = 8e-04
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 47 RAYRPFQWGNTIIIKRHDLEERQSNQPSDIFRQNAEINV------SSQTFLKGMSNASSR 100
+A R F + N + +L++RQSN+ D+FR N ++NV + +++G+ + R
Sbjct: 35 QAKRIFTYNNEFKVTSKELDQRQSNEVKDLFRTNPDVNVGGGSVMGQKIYVRGIEDRLLR 94
Query: 101 TVLDSAAQ 108
+D AAQ
Sbjct: 95 VTVDGAAQ 102
>ref|NP_207670.1| (NC_000915) iron-regulated outer membrane protein (frpB)
[Helicobacter pylori 26695]
pir||D64629 iron-regulated outer membrane protein - Helicobacter pylori
(strain 26695)
gb|AAD07924.1| (AE000597) iron-regulated outer membrane protein (frpB)
[Helicobacter pylori 26695]
Length = 791
Score = 42.7 bits (99), Expect = 8e-04
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 47 RAYRPFQWGNTIIIKRHDLEERQSNQPSDIFRQNAEINV------SSQTFLKGMSNASSR 100
+A R F + N + +L++RQSN+ D+FR N ++NV + +++G+ + R
Sbjct: 35 QAKRIFTYNNEFKVTSKELDQRQSNEVKDLFRTNPDVNVGGGSVMGQKIYVRGVEDRLLR 94
Query: 101 TVLDSAAQ 108
+D AAQ
Sbjct: 95 VTVDGAAQ 102
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.323 0.136 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,928,584
Number of Sequences: 1026957
Number of extensions: 2284664
Number of successful extensions: 4083
Number of sequences better than 1.0e-02: 9
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4079
Number of HSP's gapped (non-prelim): 9
length of query: 108
length of database: 324,149,939
effective HSP length: 84
effective length of query: 24
effective length of database: 237,885,551
effective search space: 5709253224
effective search space used: 5709253224
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 90 (39.3 bits)