BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644648|ref|NP_206817.1| hypothetical protein
[Helicobacter pylori 26695]
(93 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206817.1| (NC_000915) hypothetical protein [Helicoba... 188 9e-48
ref|NP_222735.1| (NC_000921) putative [Helicobacter pylori ... 188 1e-47
gb|AAM03030.1|AF487344_4 (AF487344) unknown [Helicobacter p... 112 6e-25
>ref|NP_206817.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64521 hypothetical protein HP0015 - Helicobacter pylori (strain 26695)
gb|AAD07091.1| (AE000524) H. pylori predicted coding region HP0015 [Helicobacter
pylori 26695]
Length = 93
Score = 188 bits (478), Expect = 9e-48
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 1 MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLD 60
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLD
Sbjct: 1 MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLD 60
Query: 61 RWKEILFTILGVVFGIFLFFKAPSLANWFMGIF 93
RWKEILFTILGVVFGIFLFFKAPSLANWFMGIF
Sbjct: 61 RWKEILFTILGVVFGIFLFFKAPSLANWFMGIF 93
>ref|NP_222735.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71984 hypothetical protein jhp0013 - Helicobacter pylori (strain J99)
gb|AAD05595.1| (AE001441) putative [Helicobacter pylori J99]
Length = 93
Score = 188 bits (477), Expect = 1e-47
Identities = 92/93 (98%), Positives = 93/93 (99%)
Query: 1 MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLD 60
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLD
Sbjct: 1 MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLD 60
Query: 61 RWKEILFTILGVVFGIFLFFKAPSLANWFMGIF 93
RWKEILFTILGVVFGIFLFFKAPSLANWFMG+F
Sbjct: 61 RWKEILFTILGVVFGIFLFFKAPSLANWFMGVF 93
>gb|AAM03030.1|AF487344_4 (AF487344) unknown [Helicobacter pylori]
Length = 94
Score = 112 bits (281), Expect = 6e-25
Identities = 52/90 (57%), Positives = 68/90 (74%), Gaps = 1/90 (1%)
Query: 4 HFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWK 63
HF K++ +G L A+ + FFN++E QL SP AKGILMVIF+G+AI++W+NLDRWK
Sbjct: 6 HFRKLIAFLGFSPLLLQAD-MTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWK 64
Query: 64 EILFTILGVVFGIFLFFKAPSLANWFMGIF 93
EIL T+L + G +FFKAP+LANWFM IF
Sbjct: 65 EILMTVLAIAIGAAIFFKAPALANWFMSIF 94
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.337 0.150 0.481
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,793,371
Number of Sequences: 1026957
Number of extensions: 1897258
Number of successful extensions: 8273
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8270
Number of HSP's gapped (non-prelim): 3
length of query: 93
length of database: 324,149,939
effective HSP length: 69
effective length of query: 24
effective length of database: 253,289,906
effective search space: 6078957744
effective search space used: 6078957744
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 90 (39.3 bits)