BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646125|ref|NP_208307.1| hypothetical protein
[Helicobacter pylori 26695]
         (179 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_208307.1|  (NC_000915) hypothetical protein [Helicoba...   362  e-100

>ref|NP_208307.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||D64709 hypothetical protein HP1516 - Helicobacter pylori (strain 26695)
 gb|AAD08558.1| (AE000649) H. pylori predicted coding region HP1516 [Helicobacter
           pylori 26695]
          Length = 179

 Score =  362 bits (930), Expect = e-100
 Identities = 179/179 (100%), Positives = 179/179 (100%)

Query: 1   MEKLFEKILHEMRSRTSFLLAFVVSLIVFIFNLKGVFQLIFESIFQYTQNKILSFSLSFF 60
           MEKLFEKILHEMRSRTSFLLAFVVSLIVFIFNLKGVFQLIFESIFQYTQNKILSFSLSFF
Sbjct: 1   MEKLFEKILHEMRSRTSFLLAFVVSLIVFIFNLKGVFQLIFESIFQYTQNKILSFSLSFF 60

Query: 61  FIFFFFYAIFLIFYQIFLWYGAKKYKQNQRDSEIVYNIQKFPNEIKEELYRCYSKKQNKI 120
           FIFFFFYAIFLIFYQIFLWYGAKKYKQNQRDSEIVYNIQKFPNEIKEELYRCYSKKQNKI
Sbjct: 61  FIFFFFYAIFLIFYQIFLWYGAKKYKQNQRDSEIVYNIQKFPNEIKEELYRCYSKKQNKI 120

Query: 121 LRTKKLDDLIDYLDLIGFFKSRDFFEPTKDDYIVKPDVLRAIKKYHKIAFKSVYWQQNK 179
           LRTKKLDDLIDYLDLIGFFKSRDFFEPTKDDYIVKPDVLRAIKKYHKIAFKSVYWQQNK
Sbjct: 121 LRTKKLDDLIDYLDLIGFFKSRDFFEPTKDDYIVKPDVLRAIKKYHKIAFKSVYWQQNK 179



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.332    0.147    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,055,221
Number of Sequences: 1026957
Number of extensions: 4500792
Number of successful extensions: 25329
Number of sequences better than 1.0e-02: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 25258
Number of HSP's gapped (non-prelim): 23
length of query: 179
length of database: 324,149,939
effective HSP length: 113
effective length of query: 66
effective length of database: 208,103,798
effective search space: 13734850668
effective search space used: 13734850668
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 93 (40.4 bits)