BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646128|ref|NP_208310.1| hypothetical protein
[Helicobacter pylori 26695]
(250 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208310.1| (NC_000915) hypothetical protein [Helicoba... 501 e-141
ref|XP_085810.2| (XM_085810) similar to myosin, heavy polyp... 44 0.001
ref|NP_496331.1| (NM_063930) mitotic chromosome and X-chrom... 42 0.008
pir||T23981 hypothetical protein R06F6.10 - Caenorhabditis ... 42 0.008
>ref|NP_208310.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64709 hypothetical protein HP1519 - Helicobacter pylori (strain 26695)
gb|AAD08564.1| (AE000650) H. pylori predicted coding region HP1519 [Helicobacter
pylori 26695]
Length = 250
Score = 501 bits (1291), Expect = e-141
Identities = 250/250 (100%), Positives = 250/250 (100%)
Query: 1 MQECRQFKLLVMTHNFDFYRTLESRLSIPRKQIKMIRKNDAREIIFEKGGYLKSFIKWIR 60
MQECRQFKLLVMTHNFDFYRTLESRLSIPRKQIKMIRKNDAREIIFEKGGYLKSFIKWIR
Sbjct: 1 MQECRQFKLLVMTHNFDFYRTLESRLSIPRKQIKMIRKNDAREIIFEKGGYLKSFIKWIR 60
Query: 61 DSEDDKDFFTLIPFVRNLIEYTSFQADKNNNYIKLTSCLHMKKDTKDIQIQDISKIFDSV 120
DSEDDKDFFTLIPFVRNLIEYTSFQADKNNNYIKLTSCLHMKKDTKDIQIQDISKIFDSV
Sbjct: 61 DSEDDKDFFTLIPFVRNLIEYTSFQADKNNNYIKLTSCLHMKKDTKDIQIQDISKIFDSV 120
Query: 121 FGAERKKKKIEEYNSKLYFETIYNIAEKIYNDKDRNRIELQNKIIFSIVIRLKSEEWMLN 180
FGAERKKKKIEEYNSKLYFETIYNIAEKIYNDKDRNRIELQNKIIFSIVIRLKSEEWMLN
Sbjct: 121 FGAERKKKKIEEYNSKLYFETIYNIAEKIYNDKDRNRIELQNKIIFSIVIRLKSEEWMLN 180
Query: 181 KLNQEFESTNNQTRELYDATKKELSDDEKRIIQKVLMITPENIHINSFMFEPILDTSLDH 240
KLNQEFESTNNQTRELYDATKKELSDDEKRIIQKVLMITPENIHINSFMFEPILDTSLDH
Sbjct: 181 KLNQEFESTNNQTRELYDATKKELSDDEKRIIQKVLMITPENIHINSFMFEPILDTSLDH 240
Query: 241 LYTCLEKVKI 250
LYTCLEKVKI
Sbjct: 241 LYTCLEKVKI 250
>ref|XP_085810.2| (XM_085810) similar to myosin, heavy polypeptide 13, skeletal
muscle; extraocular muscle myosin heavy chain [Homo
sapiens]
Length = 815
Score = 44.3 bits (103), Expect = 0.001
Identities = 42/160 (26%), Positives = 80/160 (49%), Gaps = 15/160 (9%)
Query: 85 QADKNNNYIKLTSCLHMKKDTKDIQIQDISKIFDSVFGAERKKKKIEEYNSKLYFETIYN 144
Q N Y++ + + K T DI++ D++K F ++ A K+ E N KL + I
Sbjct: 450 QKSHENQYLEAVNDFYAAKKTWDIELSDVAKDFSAISLA---CTKLTEDNKKLEID-INK 505
Query: 145 IAEKIYNDKDRNRIELQNKIIFSIVIRLKSEEWMLN------KLNQEFESTNNQTRELYD 198
I EK N+ R + + +++I + +++LK+++ + N ++ F T ++T E+ D
Sbjct: 506 ITEKT-NESIRKKSKYESEIKYLTIMKLKNDKHLKNIYKEAYRIGTLFHLTKHKTDEMED 564
Query: 199 --ATKKELSDDEKRIIQKVLMITPENIHINSF--MFEPIL 234
A KK S E + +++ +I I S + EP+L
Sbjct: 565 KIAEKKLYSIYEVQALERKELIKNRAICAMSLAELQEPLL 604
>ref|NP_496331.1| (NM_063930) mitotic chromosome and X-chromosome associated MIX-1
protein [Caenorhabditis elegans]
sp|Q09591|MIX1_CAEEL Mitotic chromosome and X-chromosome associated protein mix-1
pir||T23744 chromosome-associated MIX-1 protein - Caenorhabditis elegans
gb|AAC47834.1| (U96387) mitotic chromosome and X-chromosome associated MIX-1
protein [Caenorhabditis elegans]
emb|CAA87054.1| (Z46935) similar to mitotic chromosome and X-chromosome associated
MIX-1 protein~cDNA EST yk12b6.3 comes from this gene;
cDNA EST yk12b6.5 comes from this gene~cDNA EST yk22h3.5
comes from this gene; cDNA EST yk33e11.5 comes from this
gene~cDNA EST yk7>
emb|CAA86786.1| (Z46794) similar to mitotic chromosome and X-chromosome associated
MIX-1 protein~cDNA EST yk12b6.3 comes from this gene;
cDNA EST yk12b6.5 comes from this gene~cDNA EST yk22h3.5
comes from this gene; cDNA EST yk33e11.5 comes from this
gene~cDNA EST yk7>
emb|CAA20330.1| (AL031266) similar to mitotic chromosome and X-chromosome
associated MIX-1 protein~cDNA EST yk12b6.3 comes from
this gene; cDNA EST yk12b6.5 comes from this gene~cDNA
EST yk22h3.5 comes from this gene; cDNA EST yk33e11.5
comes from this gene~cDNA EST y>
Length = 1244
Score = 41.6 bits (96), Expect = 0.008
Identities = 48/193 (24%), Positives = 86/193 (43%), Gaps = 36/193 (18%)
Query: 37 RKNDAREIIFEKGGYLKSFIKWIRDSEDDKDFFTLIPFV---RNLIEYTSFQADKNNNYI 93
+K DA + +F K LK + + S D + ++ F +N++E T + K N
Sbjct: 178 KKKDAEKTMFLKDAKLKEVDRIFQSSIDPR----MVKFREDRKNMVEVTRLKKLKENFSR 233
Query: 94 K------LTSCLHMKKDTKDIQ-----IQDISKIFDSVF----GAERKKKKIEEYNSKLY 138
K +C +KK K+I+ I+D+ + F+ + E +KKK+EE +
Sbjct: 234 KYEAFQYFQTCEAVKKSAKEIEDAKKGIEDLGEKFNQLDLDLKNKEDEKKKMEESRDDQH 293
Query: 139 FETIYNIAEKIYNDKDRNRIELQNKIIFSIVIRLKSEEWMLNKLNQEFESTN---NQTRE 195
E + A + I LQ + + + ++ +NKL +E E N ++ RE
Sbjct: 294 EEAALSAAHL-----SKQSIMLQKETVKNQLVET------INKLKKEGEQINKSLSKDRE 342
Query: 196 LYDATKKELSDDE 208
+ DA +KE D +
Sbjct: 343 VLDAKRKEHEDSK 355
>pir||T23981 hypothetical protein R06F6.10 - Caenorhabditis elegans
Length = 421
Score = 41.6 bits (96), Expect = 0.008
Identities = 48/193 (24%), Positives = 86/193 (43%), Gaps = 36/193 (18%)
Query: 37 RKNDAREIIFEKGGYLKSFIKWIRDSEDDKDFFTLIPFV---RNLIEYTSFQADKNNNYI 93
+K DA + +F K LK + + S D + ++ F +N++E T + K N
Sbjct: 178 KKKDAEKTMFLKDAKLKEVDRIFQSSIDPR----MVKFREDRKNMVEVTRLKKLKENFSR 233
Query: 94 K------LTSCLHMKKDTKDIQ-----IQDISKIFDSVF----GAERKKKKIEEYNSKLY 138
K +C +KK K+I+ I+D+ + F+ + E +KKK+EE +
Sbjct: 234 KYEAFQYFQTCEAVKKSAKEIEDAKKGIEDLGEKFNQLDLDLKNKEDEKKKMEESRDDQH 293
Query: 139 FETIYNIAEKIYNDKDRNRIELQNKIIFSIVIRLKSEEWMLNKLNQEFESTN---NQTRE 195
E + A + I LQ + + + ++ +NKL +E E N ++ RE
Sbjct: 294 EEAALSAAHL-----SKQSIMLQKETVKNQLVET------INKLKKEGEQINKSLSKDRE 342
Query: 196 LYDATKKELSDDE 208
+ DA +KE D +
Sbjct: 343 VLDAKRKEHEDSK 355
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.321 0.138 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,147,906
Number of Sequences: 1026957
Number of extensions: 6246846
Number of successful extensions: 21914
Number of sequences better than 1.0e-02: 4
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 21913
Number of HSP's gapped (non-prelim): 4
length of query: 250
length of database: 324,149,939
effective HSP length: 118
effective length of query: 132
effective length of database: 202,969,013
effective search space: 26791909716
effective search space used: 26791909716
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 96 (41.6 bits)