BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646133|ref|NP_208315.1| hypothetical protein
[Helicobacter pylori 26695]
(211 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208315.1| (NC_000915) hypothetical protein [Helicoba... 437 e-122
ref|NP_224132.1| (NC_000921) putative [Helicobacter pylori ... 428 e-119
ref|NP_223078.1| (NC_000921) putative Outer membrane protei... 174 4e-43
gb|AAD01681.1| (AF021090) conserved hypothetical protein [H... 146 2e-34
ref|NP_223142.1| (NC_000921) putative Outer membrane protei... 62 6e-09
ref|NP_207270.1| (NC_000915) outer membrane protein (omp11)... 62 6e-09
ref|NP_222935.1| (NC_000921) Outer membrane protein/porin [... 60 1e-08
ref|NP_207027.1| (NC_000915) outer membrane protein (omp6) ... 59 5e-08
ref|NP_207948.1| (NC_000915) outer membrane protein (omp26)... 54 1e-06
ref|NP_223801.1| (NC_000921) putative Outer membrane protei... 53 2e-06
ref|NP_208186.1| (NC_000915) outer membrane protein (omp30)... 52 6e-06
ref|NP_224112.1| (NC_000921) putative Outer membrane protei... 50 1e-05
ref|NP_208292.1| (NC_000915) outer membrane protein (omp32)... 50 1e-05
emb|CAB42878.1| (Y18996) HopW protein [Helicobacter pylori] 50 1e-05
ref|NP_224150.1| (NC_000921) putative OUTER MEMBRANE PROTEI... 50 2e-05
ref|NP_207500.1| (NC_000915) outer membrane protein (omp15)... 50 2e-05
ref|NP_222743.1| (NC_000921) putative Outer membrane protei... 49 3e-05
ref|NP_206827.1| (NC_000915) outer membrane protein (omp2) ... 49 5e-05
ref|NP_207465.1| (NC_000915) outer membrane protein (omp14)... 49 5e-05
ref|NP_223332.1| (NC_000921) putative Outer membrane protei... 49 5e-05
emb|CAB42880.1| (Y18998) HopZ protein [Helicobacter pylori] 48 6e-05
ref|NP_222958.1| (NC_000921) putative Outer membrane protei... 48 6e-05
ref|NP_207050.1| (NC_000915) outer membrane protein (omp7) ... 48 6e-05
ref|NP_206927.1| (NC_000915) outer membrane protein (omp4) ... 47 1e-04
emb|CAB42877.1| (Y18995) HopV protein [Helicobacter pylori] 47 1e-04
ref|NP_208260.1| (NC_000915) outer membrane protein (omp31)... 47 1e-04
ref|NP_223377.1| (NC_000921) putative Outer membrane protei... 47 2e-04
ref|NP_223380.1| (NC_000921) putative Outer membrane protei... 47 2e-04
emb|CAB42974.1| (Y18985) hopZ [Helicobacter pylori] 46 2e-04
ref|NP_222838.1| (NC_000921) putative Outer membrane protei... 46 3e-04
ref|NP_222729.1| (NC_000921) putative Outer membrane protei... 45 4e-04
ref|NP_223363.1| (NC_000921) Outer membrane protein/porin [... 45 4e-04
emb|CAB42979.1| (Y18991) hopZ [Helicobacter pylori] 45 5e-04
emb|CAB43002.1| (Y18990) hopZ [Helicobacter pylori] 45 5e-04
ref|NP_224080.1| (NC_000921) putative Outer membrane protei... 45 5e-04
ref|NP_207516.1| (NC_000915) outer membrane protein [Helico... 45 5e-04
emb|CAB53535.1| (Y18992) hopZ [Helicobacter pylori] 45 5e-04
ref|NP_206811.1| (NC_000915) outer membrane protein [Helico... 45 5e-04
emb|CAB42973.1| (Y18984) hopZ [Helicobacter pylori] 45 5e-04
ref|NP_207519.1| (NC_000915) outer membrane protein [Helico... 45 5e-04
ref|NP_223027.1| (NC_000921) putative Outer membrane protei... 44 0.002
ref|NP_208035.1| (NC_000915) outer membrane protein (omp28)... 44 0.002
ref|NP_207115.1| (NC_000915) outer membrane protein (omp9) ... 44 0.002
gb|AAB97730.1| (AF001389) adhesin-binding fucosylated histo... 43 0.002
ref|NP_207689.1| (NC_000915) outer membrane protein (omp19)... 43 0.002
gb|AAB97729.1| (AF001388) adhesin-binding fucosylated histo... 43 0.002
gb|AAC38081.1| (AF033654) adhesin binding fucosylated histo... 43 0.002
ref|NP_207052.1| (NC_000915) outer membrane protein (omp8) ... 42 0.003
ref|NP_223551.1| (NC_000921) outer membrane protein - adhes... 42 0.005
ref|NP_223882.1| (NC_000921) outer membrane protein - adhes... 42 0.005
emb|CAB42879.1| (Y18997) HopX protein [Helicobacter pylori] 42 0.005
ref|NP_222959.1| (NC_000921) putative Outer membrane protei... 42 0.005
ref|NP_207968.1| (NC_000915) outer membrane protein (omp27)... 42 0.006
>ref|NP_208315.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||E64710 hypothetical protein HP1525 - Helicobacter pylori (strain 26695)
gb|AAD08567.1| (AE000650) H. pylori predicted coding region HP1525 [Helicobacter
pylori 26695]
Length = 211
Score = 437 bits (1125), Expect = e-122
Identities = 211/211 (100%), Positives = 211/211 (100%)
Query: 1 MKLFSKDLFKKVTPLFLSVYFLNPTIMQAKSRFYVASQYQVGKMIMKKYNDLKRTIEGAS 60
MKLFSKDLFKKVTPLFLSVYFLNPTIMQAKSRFYVASQYQVGKMIMKKYNDLKRTIEGAS
Sbjct: 1 MKLFSKDLFKKVTPLFLSVYFLNPTIMQAKSRFYVASQYQVGKMIMKKYNDLKRTIEGAS 60
Query: 61 FSLGWEINPTNYWFYSRYYFFMDYGNVILNKRTGAQANMFTYGFGGDLIVEYNKNPLYVF 120
FSLGWEINPTNYWFYSRYYFFMDYGNVILNKRTGAQANMFTYGFGGDLIVEYNKNPLYVF
Sbjct: 61 FSLGWEINPTNYWFYSRYYFFMDYGNVILNKRTGAQANMFTYGFGGDLIVEYNKNPLYVF 120
Query: 121 SLFYGMQVAENTWTISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVGFKFQTVLFHHDAS 180
SLFYGMQVAENTWTISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVGFKFQTVLFHHDAS
Sbjct: 121 SLFYGMQVAENTWTISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVGFKFQTVLFHHDAS 180
Query: 181 IEVGIKWPFAFEYDSAFVRLFSVFISHTFYL 211
IEVGIKWPFAFEYDSAFVRLFSVFISHTFYL
Sbjct: 181 IEVGIKWPFAFEYDSAFVRLFSVFISHTFYL 211
>ref|NP_224132.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71809 hypothetical protein jhp1414 - Helicobacter pylori (strain J99)
gb|AAD06993.1| (AE001564) putative [Helicobacter pylori J99]
Length = 211
Score = 428 bits (1100), Expect = e-119
Identities = 205/211 (97%), Positives = 208/211 (98%)
Query: 1 MKLFSKDLFKKVTPLFLSVYFLNPTIMQAKSRFYVASQYQVGKMIMKKYNDLKRTIEGAS 60
MK FSKDLFKKVTPLFLSVYFL+PT+ QAKSRFYVASQYQVGKMIMKKYNDLKRTIEGAS
Sbjct: 1 MKFFSKDLFKKVTPLFLSVYFLSPTLTQAKSRFYVASQYQVGKMIMKKYNDLKRTIEGAS 60
Query: 61 FSLGWEINPTNYWFYSRYYFFMDYGNVILNKRTGAQANMFTYGFGGDLIVEYNKNPLYVF 120
FSLGWEINPTNYWFYSRYYFFMDYGNVILNKRTGAQANMFTYGFGGDLI+EYNKNPLYVF
Sbjct: 61 FSLGWEINPTNYWFYSRYYFFMDYGNVILNKRTGAQANMFTYGFGGDLIMEYNKNPLYVF 120
Query: 121 SLFYGMQVAENTWTISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVGFKFQTVLFHHDAS 180
SLFYGMQVAENTWTISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVGFKFQTVLFHHDAS
Sbjct: 121 SLFYGMQVAENTWTISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVGFKFQTVLFHHDAS 180
Query: 181 IEVGIKWPFAFEYDSAFVRLFSVFISHTFYL 211
IEVGIKWPFAFEYDS FVRLFSVFISHTFYL
Sbjct: 181 IEVGIKWPFAFEYDSPFVRLFSVFISHTFYL 211
>ref|NP_223078.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
ref|NP_207857.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||B64653 probable outer membrane protein - Helicobacter pylori
gb|AAD08104.1| (AE000613) conserved hypothetical protein [Helicobacter pylori
26695]
gb|AAD05945.1| (AE001471) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 200
Score = 174 bits (442), Expect = 4e-43
Identities = 82/196 (41%), Positives = 128/196 (64%), Gaps = 3/196 (1%)
Query: 15 LFLSVYFLNPTIMQAKSRFYVASQYQVGKMIMKKYNDLKRTIEGASFSLGWEINPTNYWF 74
L LS+ FLN I+ A++ Y++S YQ+G + M+ N K ++GAS G+E+NP N W
Sbjct: 7 LILSMSFLN--ILNAENLSYMSSSYQIGTVFMRPLNTNK-LLQGASILQGYEVNPKNDWA 63
Query: 75 YSRYYFFMDYGNVILNKRTGAQANMFTYGFGGDLIVEYNKNPLYVFSLFYGMQVAENTWT 134
YSRYYFF+DYGNV+ N + QANMFTYG GGD +V Y KNP+ ++ F+G+Q+A NTW
Sbjct: 64 YSRYYFFIDYGNVLFNNDSTLQANMFTYGVGGDFMVAYAKNPINRWAFFFGLQLAANTWI 123
Query: 135 ISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVGFKFQTVLFHHDASIEVGIKWPFAFEYD 194
++ + +++ W S++ F+ + FR +G G +F+T++ +H +E+G+K E
Sbjct: 124 LNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGVQFRTIVLYHKVDVEIGMKIFLTPERR 183
Query: 195 SAFVRLFSVFISHTFY 210
S F R F F+SH+++
Sbjct: 184 SLFERSFLFFVSHSWH 199
>gb|AAD01681.1| (AF021090) conserved hypothetical protein [Helicobacter pylori]
Length = 160
Score = 146 bits (368), Expect = 2e-34
Identities = 68/153 (44%), Positives = 102/153 (66%), Gaps = 3/153 (1%)
Query: 15 LFLSVYFLNPTIMQAKSRFYVASQYQVGKMIMKKYNDLKRTIEGASFSLGWEINPTNYWF 74
L LS+ FLN I+ A++ Y++S YQ+G + M+ N K ++GAS G+E+NP N W
Sbjct: 7 LILSISFLN--ILNAENLSYMSSSYQIGTVFMRPLNTNK-LLQGASILQGYEVNPKNDWA 63
Query: 75 YSRYYFFMDYGNVILNKRTGAQANMFTYGFGGDLIVEYNKNPLYVFSLFYGMQVAENTWT 134
YSRYYFF+DYGNV+ N + QANMFTYG GGD +V Y KNP+ ++ F+G+Q+A NTW
Sbjct: 64 YSRYYFFIDYGNVLFNNDSTLQANMFTYGVGGDFMVAYAKNPINRWAFFFGLQLAANTWI 123
Query: 135 ISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVG 167
++ + +++ W S++ F+ + FR +G G
Sbjct: 124 LNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFG 156
>ref|NP_223142.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||D71934 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06005.1| (AE001476) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 186
Score = 61.6 bits (148), Expect = 6e-09
Identities = 47/183 (25%), Positives = 83/183 (44%), Gaps = 28/183 (15%)
Query: 33 FYVASQYQVGKM--IMKKYNDLKR--TIEGASFSLGWEINPTNYWFYSRYYFFMDYGNVI 88
F++ + YQ G+ Y+D + + G +F LG+ + N WF +R Y F+D+ N
Sbjct: 24 FFMGAGYQQGRYGPYNSNYSDWRHGNDLYGLNFKLGF-VGFANKWFGARVYGFLDWFNTS 82
Query: 89 LNKRTGAQANMFTYGFGGDLIVEYNKNPLYVFSLFYGMQVAENTWTISKHSANFIIDDWR 148
+ T + N+ TYG GGDLIV + L G+Q+A NTW
Sbjct: 83 GTEHT--KTNLLTYGGGGDLIVNLIPLDKFALGLIGGVQLAGNTWMFP------------ 128
Query: 149 SIQGFSLKTSNFRMLGLVGFKFQTVLFHHDASIEVGIKWPFAFE--YDSAFVRLFSVFIS 206
+ + + F+ L +G + + ++ E G+K+P + D +R +S ++
Sbjct: 129 ----YDVNQTRFQFLWNLGGRMRV---GDRSAFEAGVKFPMVNQGSKDVGLIRYYSWYVD 181
Query: 207 HTF 209
+ F
Sbjct: 182 YVF 184
>ref|NP_207270.1| (NC_000915) outer membrane protein (omp11) [Helicobacter pylori
26695]
pir||H64578 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD07540.1| (AE000562) outer membrane protein (omp11) [Helicobacter pylori
26695]
Length = 186
Score = 61.6 bits (148), Expect = 6e-09
Identities = 47/183 (25%), Positives = 83/183 (44%), Gaps = 28/183 (15%)
Query: 33 FYVASQYQVGKM--IMKKYNDLKR--TIEGASFSLGWEINPTNYWFYSRYYFFMDYGNVI 88
F++ + YQ G+ Y+D + + G +F LG+ + N WF +R Y F+D+ N
Sbjct: 24 FFMGAGYQQGRYGPYNSNYSDWRHGNDLYGLNFKLGF-VGFANKWFGARVYGFLDWFNTS 82
Query: 89 LNKRTGAQANMFTYGFGGDLIVEYNKNPLYVFSLFYGMQVAENTWTISKHSANFIIDDWR 148
+ T + N+ TYG GGDLIV + L G+Q+A NTW
Sbjct: 83 GTEHT--KTNLLTYGGGGDLIVNLIPLDKFALGLIGGVQLAGNTWMFP------------ 128
Query: 149 SIQGFSLKTSNFRMLGLVGFKFQTVLFHHDASIEVGIKWPFAFE--YDSAFVRLFSVFIS 206
+ + + F+ L +G + + ++ E G+K+P + D +R +S ++
Sbjct: 129 ----YDVNQTRFQFLWNLGGRMRV---GDRSAFEAGVKFPMVNQGSKDVGLIRYYSWYVD 181
Query: 207 HTF 209
+ F
Sbjct: 182 YVF 184
>ref|NP_222935.1| (NC_000921) Outer membrane protein/porin [Helicobacter pylori J99]
pir||A71958 outer membrane protein/porin - Helicobacter pylori (strain J99)
gb|AAD05801.1| (AE001460) Outer membrane protein/porin [Helicobacter pylori J99]
Length = 483
Score = 60.5 bits (145), Expect = 1e-08
Identities = 49/166 (29%), Positives = 82/166 (48%), Gaps = 21/166 (12%)
Query: 56 IEGASFSLGW-EINPTNYWFYSRYYFFMDYGNVILNKRT-GAQANMFTYGFGGDLIVEY- 112
+ G LG+ + N +F RYY F DY + + +N+FTYG G DL++ +
Sbjct: 321 MNGVGVQLGYKQFFGKNKFFGIRYYGFFDYNYAYIKSNFFNSASNVFTYGAGSDLLLNFI 380
Query: 113 ----NKNPLYVFSLFYGMQVAENTWTISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVGF 168
++N F +F G+ +A TW ++ SAN I + S + +NF+ L G
Sbjct: 381 NGGSDRNRKVSFGIFGGIALAGTTW-LNNQSANLKITN--SAYSAKINNTNFQFLFNTGL 437
Query: 169 KFQTVLFHHDASIEVGIKWP-FAFEYDS------AFVRLFSVFISH 207
+ Q + HH IE+G+K P Y S A+ RL+S+++++
Sbjct: 438 RLQGI--HH--GIELGVKIPTINTNYYSFMGAKLAYRRLYSLYLNY 479
>ref|NP_207027.1| (NC_000915) outer membrane protein (omp6) [Helicobacter pylori
26695]
pir||E64548 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD07298.1| (AE000543) outer membrane protein (omp6) [Helicobacter pylori
26695]
Length = 483
Score = 58.5 bits (140), Expect = 5e-08
Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 21/166 (12%)
Query: 56 IEGASFSLGW-EINPTNYWFYSRYYFFMDYGNVILNKRT-GAQANMFTYGFGGDLIVEY- 112
+ G LG+ + N +F RYY F DY + + + +N+FTYG G DL++ +
Sbjct: 321 MNGVGVQLGYKQFFGKNKFFGIRYYAFFDYNHAYIKSNFFNSASNVFTYGAGSDLLLNFI 380
Query: 113 ----NKNPLYVFSLFYGMQVAENTWTISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVGF 168
+KN F +F G+ +A TW +S + S + +NF+ L G
Sbjct: 381 NGGSDKNRKVSFGIFGGIALAGTTWL---NSQFMNLKTTNSAYSAKINNTNFQFLFNTGL 437
Query: 169 KFQTVLFHHDASIEVGIKWP-FAFEYDS------AFVRLFSVFISH 207
+ Q + HH +E+G+K P Y S A+ RL+SV+ ++
Sbjct: 438 RLQGI--HH--GVELGVKIPTINTNYYSFMGAKLAYRRLYSVYFNY 479
>ref|NP_207948.1| (NC_000915) outer membrane protein (omp26) [Helicobacter pylori
26695]
pir||E64664 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD08205.1| (AE000621) outer membrane protein (omp26) [Helicobacter pylori 26695]
Length = 1230
Score = 53.5 bits (127), Expect = 1e-06
Identities = 56/194 (28%), Positives = 84/194 (42%), Gaps = 37/194 (19%)
Query: 45 IMKKYNDLKRTIEGASFSLGWEINPTNYWFYS------RYYFFMDYG-NVILNKRTGAQA 97
++ +Y K T G S LG + Y+F R+YFF DYG + I +A
Sbjct: 1039 VLSQYAAAKSTQHGMSNGLGVGLG-YKYFFGKARKLGLRHYFFFDYGFSEIGLANQSVKA 1097
Query: 98 NMFTYGFGGDLIVE-----YNKNPLYVFSLFYGMQVAENTWTISKHSANFIIDDWRSIQG 152
N+F YG G D + YN L F LF G+Q+ TW S IID+W S
Sbjct: 1098 NIFAYGVGTDFLWNLFRRTYNTKALN-FGLFAGVQLGGATWLSSLRQQ--IIDNWGSAN- 1153
Query: 153 FSLKTSNFRM-------LGLVGFKFQTVLFHHDA-----SIEVGIKWPFAFE-------Y 193
+ ++NF++ FK FH+ S+E GIK P +
Sbjct: 1154 -DIHSTNFQVALNFGVRTNFAEFKRFAKKFHNQGVISQKSVEFGIKVPLINQAYLNSAGA 1212
Query: 194 DSAFVRLFSVFISH 207
D ++ RL++ +I++
Sbjct: 1213 DVSYRRLYTFYINY 1226
>ref|NP_223801.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori J99]
pir||D71850 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06666.1| (AE001536) putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 53.1 bits (126), Expect = 2e-06
Identities = 56/194 (28%), Positives = 84/194 (42%), Gaps = 37/194 (19%)
Query: 45 IMKKYNDLKRTIEGASFSLGWEINPTNYWFYS------RYYFFMDYG-NVILNKRTGAQA 97
++ +Y K T G S LG I Y+F R+YFF DYG + I +A
Sbjct: 1046 VLSQYAAAKSTQHGMSNGLGVGIG-YKYFFGKARKLGLRHYFFFDYGFSEIGLANQSVKA 1104
Query: 98 NMFTYGFGGDLIVE-----YNKNPLYVFSLFYGMQVAENTWTISKHSANFIIDDWRSIQG 152
N+F YG G D + YN L F LF G+Q+ TW S IID+W +
Sbjct: 1105 NIFAYGVGTDFLWNLFRRTYNTKALN-FGLFAGVQLGGATWLSSLRQQ--IIDNWGNAN- 1160
Query: 153 FSLKTSNFRM-------LGLVGFKFQTVLFHHDA-----SIEVGIKWPFAFE-------Y 193
+ ++NF++ FK FH+ S+E GIK P +
Sbjct: 1161 -DIHSTNFQVALNFGVRTNFAEFKRFAKKFHNQGVISQKSVEFGIKVPLINQAYLNSAGA 1219
Query: 194 DSAFVRLFSVFISH 207
D ++ RL++ +I++
Sbjct: 1220 DVSYRRLYTFYINY 1233
>ref|NP_208186.1| (NC_000915) outer membrane protein (omp30) [Helicobacter pylori
26695]
pir||C64694 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD08440.1| (AE000639) outer membrane protein (omp30) [Helicobacter pylori
26695]
Length = 242
Score = 51.6 bits (122), Expect = 6e-06
Identities = 55/215 (25%), Positives = 90/215 (41%), Gaps = 46/215 (21%)
Query: 34 YVASQYQVGKMIMKKYNDLKRTIEGASFSLGWEINPTNYWFYSRYYFFMDY--------- 84
Y+ Q Q+ I + TI+G LG++ Y F R Y F DY
Sbjct: 33 YLQGQAQMHADINSQKQATSATIKGFDALLGYQFFFGKY-FGLRLYGFFDYAHANSIRLK 91
Query: 85 ----------------GNVILNKRTGA------QANMFTYGFGGDLIVEYNKNPLYVFSL 122
G +N+ T + NM TYG D++V N +
Sbjct: 92 NPNYNNEVVQLAGQVLGKQEINRLTSLADPKTFEPNMLTYGGAMDVMVNVINNGIMSLGA 151
Query: 123 FYGMQVAENTWTISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVGFKFQTVLFHHDASIE 182
F G+Q+A N+W ++ S I+ + + S K ++F+ L VG + + +L H +SIE
Sbjct: 152 FGGVQLAGNSWLMATPSFEGILVEQALV---SKKATSFQFLFNVGARLR-ILKH--SSIE 205
Query: 183 VGIKWPF--------AFEYDSAFVRLFSVFISHTF 209
G+K+P A D F R++S ++++ F
Sbjct: 206 AGVKFPMLKKNPYITAKNLDIGFRRVYSWYVNYVF 240
>ref|NP_224112.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||C71813 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06975.1| (AE001561) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 388
Score = 50.4 bits (119), Expect = 1e-05
Identities = 26/73 (35%), Positives = 34/73 (45%), Gaps = 11/73 (15%)
Query: 73 WFYSRYYFFMDYGNVILNKRTGA-----------QANMFTYGFGGDLIVEYNKNPLYVFS 121
WF RYY F DYG+ + A +A+M+TYGFG D++ P
Sbjct: 171 WFGLRYYGFFDYGHTNFSNSRAANAISPFYLSDQKADMYTYGFGTDMLFNVIDKPKATAG 230
Query: 122 LFYGMQVAENTWT 134
F G+ A NTWT
Sbjct: 231 FFVGVNFAGNTWT 243
>ref|NP_208292.1| (NC_000915) outer membrane protein (omp32) [Helicobacter pylori
26695]
pir||E64707 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD08546.1| (AE000648) outer membrane protein (omp32) [Helicobacter pylori
26695]
Length = 388
Score = 50.4 bits (119), Expect = 1e-05
Identities = 26/73 (35%), Positives = 34/73 (45%), Gaps = 11/73 (15%)
Query: 73 WFYSRYYFFMDYGNVILNKRTGA-----------QANMFTYGFGGDLIVEYNKNPLYVFS 121
WF RYY F DYG+ + A +A+M+TYGFG D++ P
Sbjct: 171 WFGLRYYGFFDYGHTNFSNSRAANAISPFYLSDQKADMYTYGFGTDMLFNIIDKPKATAG 230
Query: 122 LFYGMQVAENTWT 134
F G+ A NTWT
Sbjct: 231 FFLGVNFAGNTWT 243
>emb|CAB42878.1| (Y18996) HopW protein [Helicobacter pylori]
Length = 387
Score = 50.4 bits (119), Expect = 1e-05
Identities = 26/73 (35%), Positives = 34/73 (45%), Gaps = 11/73 (15%)
Query: 73 WFYSRYYFFMDYGNVILNKRTGA-----------QANMFTYGFGGDLIVEYNKNPLYVFS 121
WF RYY F DYG+ + A +A+M+TYGFG D++ P
Sbjct: 170 WFGLRYYGFFDYGHTNFSNSRAANAISPFYLSDQKADMYTYGFGTDMLFNIIDKPKATAG 229
Query: 122 LFYGMQVAENTWT 134
F G+ A NTWT
Sbjct: 230 FFVGVNFAGNTWT 242
>ref|NP_224150.1| (NC_000921) putative OUTER MEMBRANE PROTEIN [Helicobacter pylori
J99]
pir||H71806 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD07010.1| (AE001566) putative OUTER MEMBRANE PROTEIN [Helicobacter pylori
J99]
Length = 242
Score = 50.1 bits (118), Expect = 2e-05
Identities = 54/215 (25%), Positives = 90/215 (41%), Gaps = 46/215 (21%)
Query: 34 YVASQYQVGKMIMKKYNDLKRTIEGASFSLGWEINPTNYWFYSRYYFFMDY--------- 84
Y+ Q Q+ I + TI+G LG++ + F R Y F DY
Sbjct: 33 YLQGQAQMHADINSQKQATNATIKGFDALLGYQFFFEKH-FGLRLYGFFDYAHANSIKLK 91
Query: 85 ----------------GNVILNKRTGA------QANMFTYGFGGDLIVEYNKNPLYVFSL 122
G +N+ T + NM TYG D++V N +
Sbjct: 92 NPNYNSEAAQVASQILGKQEINRLTNIADPRTFEPNMLTYGGAMDVMVNVINNGIMSLGA 151
Query: 123 FYGMQVAENTWTISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVGFKFQTVLFHHDASIE 182
F G+Q+A N+W ++ S I+ + + S K ++F+ L VG + + +L H +SIE
Sbjct: 152 FGGIQLAGNSWLMATPSFEGILVEQALV---SKKATSFQFLFNVGARLR-ILKH--SSIE 205
Query: 183 VGIKWPF--------AFEYDSAFVRLFSVFISHTF 209
G+K+P A D F R++S ++++ F
Sbjct: 206 AGVKFPMLKKNPYITAKNLDIGFRRVYSWYVNYVF 240
>ref|NP_207500.1| (NC_000915) outer membrane protein (omp15) [Helicobacter pylori
26695]
pir||B64608 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD07756.1| (AE000583) outer membrane protein (omp15) [Helicobacter pylori
26695]
Length = 273
Score = 50.1 bits (118), Expect = 2e-05
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 21/137 (15%)
Query: 70 TNYWFYSRYYFFMDYGNVILNKRTGA----QANMFTYGFGGDLIVEYNKNPLYVFSLFYG 125
T+ WF R Y DYG+ L K+ A Q +M ++G G DL+ + N F +F G
Sbjct: 106 TSKWFGFRVYGLFDYGHATLGKQVYAPNKIQLDMVSWGVGSDLLADIIDNDNASFGIFGG 165
Query: 126 MQVAENTWTISKHSANFIIDDWRSIQG--------------FSLKTSNFRMLGLVGFKFQ 171
+ + NTW S +AN+ + +G +S KTS + F +
Sbjct: 166 VAIGGNTWKSS--AANYWKEQIIEAKGPDVCTPTYCNPNAPYSTKTSTVAFQVWLNFGVR 223
Query: 172 TVLFHHDASIEVGIKWP 188
++ H+ +E G++ P
Sbjct: 224 ANIYKHN-GVEFGVRVP 239
>ref|NP_222743.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||C71982 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD05605.1| (AE001442) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 690
Score = 49.3 bits (116), Expect = 3e-05
Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 26/176 (14%)
Query: 56 IEGASFSLGW-EINPTNYWFYSRYYFFMDYGNVILNKRT--GAQANMFTYGFGGDLIVEY 112
+ G F +G+ + N + +RYY F+DY N NK A ++++TYG G DL+V +
Sbjct: 517 MNGIGFQVGYKQFFGKNKRWGARYYGFVDY-NHTYNKSQFFNASSDVWTYGVGSDLLVNF 575
Query: 113 -----NKNPLYVFSLFYGMQVAENTWTISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVG 167
K+ F F G+ +A +W S++ ++++ + + T+NF+ L +G
Sbjct: 576 INDKATKHNKISFGAFGGIALAGTSWLNSQYVNLANVNNYYKAK---INTANFQFLFNLG 632
Query: 168 FKFQTVLFHHDAS-------IEVGIKWP-FAFEYDS------AFVRLFSVFISHTF 209
+ H A+ IE+G K P Y S + RL+SV++++ F
Sbjct: 633 LRMNLARKKHRATDNAAQHGIELGTKIPTINTNYYSLLGTTLQYRRLYSVYLNYVF 688
>ref|NP_206827.1| (NC_000915) outer membrane protein (omp2) [Helicobacter pylori
26695]
pir||A64523 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD07106.1| (AE000525) outer membrane protein (omp2) [Helicobacter pylori
26695]
Length = 711
Score = 48.5 bits (114), Expect = 5e-05
Identities = 47/176 (26%), Positives = 87/176 (48%), Gaps = 26/176 (14%)
Query: 56 IEGASFSLGW-EINPTNYWFYSRYYFFMDYGNVILNKRT--GAQANMFTYGFGGDLIVEY 112
+ G F +G+ + N + +RYY F+DY N NK + ++++TYG G DL+V +
Sbjct: 538 MNGIGFQVGYKQFFGKNKRWGARYYGFVDY-NHTYNKSQFFNSDSDVWTYGVGSDLLVNF 596
Query: 113 -----NKNPLYVFSLFYGMQVAENTWTISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVG 167
K+ F F G+Q+A +W S++ ++++ + + TSNF+ L +G
Sbjct: 597 INDKATKHNKISFGAFGGIQLAGTSWLNSQYVNLANVNNYYKAK---INTSNFQFLFNLG 653
Query: 168 FKF-----QTVLFHHDA--SIEVGIKWP-FAFEYDS------AFVRLFSVFISHTF 209
+ + + H A +E+G+K P Y S + RL+SV++++ F
Sbjct: 654 LRTNLARNKRIGADHSAQHGMELGVKIPTINTNYYSLLGTTLQYRRLYSVYLNYVF 709
>ref|NP_207465.1| (NC_000915) outer membrane protein (omp14) [Helicobacter pylori
26695]
pir||G64603 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD07732.1| (AE000580) outer membrane protein (omp14) [Helicobacter pylori
26695]
Length = 270
Score = 48.5 bits (114), Expect = 5e-05
Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 40/144 (27%)
Query: 30 KSRFYVASQYQVGKMIMKKYN-----------------DLKRTIEGASFSLGW-EINPTN 71
K+ +Y+ YQVG+ N D ++G ++G+ +
Sbjct: 46 KNAWYLGISYQVGQASQSVKNPPKSSEFNYPKFPVGKTDYLAVMQGLGLTVGYKQFFGEK 105
Query: 72 YWFYSRYYFFMDYGNVILNKRT----------------------GAQANMFTYGFGGDLI 109
WF +RYY FMDYG+ + G ++MFTYG G D +
Sbjct: 106 RWFGARYYGFMDYGHAVFGANALTSDNGGVCELHQPCATKVGTMGNLSDMFTYGVGIDTL 165
Query: 110 VEYNKNPLYVFSLFYGMQVAENTW 133
F F+G Q+A N+W
Sbjct: 166 YNVINKEDASFGFFFGAQIAGNSW 189
>ref|NP_223332.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||G71909 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06195.1| (AE001493) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 270
Score = 48.5 bits (114), Expect = 5e-05
Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 40/144 (27%)
Query: 30 KSRFYVASQYQVGKMIMKKYN-----------------DLKRTIEGASFSLGW-EINPTN 71
K+ +Y+ YQVG+ N D ++G ++G+ +
Sbjct: 46 KNAWYLGISYQVGQASQSVKNPPKSSEFNYPKFPVGKTDYLAVMQGLGLTVGYKQFFGEK 105
Query: 72 YWFYSRYYFFMDYGNVILNKRT----------------------GAQANMFTYGFGGDLI 109
WF +RYY FMDYG+ + G ++MFTYG G D +
Sbjct: 106 RWFGARYYGFMDYGHAVFGANALTSDNGGVCKLNEPCATKVGTMGNLSDMFTYGVGIDTL 165
Query: 110 VEYNKNPLYVFSLFYGMQVAENTW 133
F F+G Q+A N+W
Sbjct: 166 YNVINKEDASFGFFFGAQIAGNSW 189
>emb|CAB42880.1| (Y18998) HopZ protein [Helicobacter pylori]
Length = 485
Score = 48.1 bits (113), Expect = 6e-05
Identities = 45/151 (29%), Positives = 71/151 (46%), Gaps = 28/151 (18%)
Query: 77 RYYFFMDYGNVIL---NKRTGAQANMFTYGFGGDLIVEY----NKNPLYVFSLFYGMQVA 129
RYY F+DYG N + GA N+ TYG G D + + LF+G Q+A
Sbjct: 341 RYYGFLDYGYANFGDTNLKVGA--NLVTYGVGTDFLYNVYERSRRRERTTIGLFFGAQIA 398
Query: 130 ENTWTISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVGFK--FQTVLFHH---DASIEVG 184
TW+ + + + S Q +K+S+F+ L +G + F F+ D IE G
Sbjct: 399 GQTWSTN-------VTNLLSGQRPDVKSSSFQFLFDLGVRTNFAKTNFNKHRLDQGIEFG 451
Query: 185 IKWP------FAFEYDSA-FVRLFSVFISHT 208
+K P FA + SA ++R FS ++ ++
Sbjct: 452 VKIPVIAHKYFATQGSSASYMRNFSFYVGYS 482
>ref|NP_222958.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||G71957 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD05813.1| (AE001461) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 479
Score = 48.1 bits (113), Expect = 6e-05
Identities = 45/151 (29%), Positives = 71/151 (46%), Gaps = 28/151 (18%)
Query: 77 RYYFFMDYGNVIL---NKRTGAQANMFTYGFGGDLIVEY----NKNPLYVFSLFYGMQVA 129
RYY F+DYG N + GA N+ TYG G D + + LF+G Q+A
Sbjct: 335 RYYGFLDYGYANFGDTNLKVGA--NLVTYGVGTDFLYNVYERSRRRERTTIGLFFGAQIA 392
Query: 130 ENTWTISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVGFK--FQTVLFHH---DASIEVG 184
TW+ + + + S Q +K+S+F+ L +G + F F+ D IE G
Sbjct: 393 GQTWSTN-------VTNLLSGQRPDVKSSSFQFLFDLGVRTNFAKTNFNKHRLDQGIEFG 445
Query: 185 IKWP------FAFEYDSA-FVRLFSVFISHT 208
+K P FA + SA ++R FS ++ ++
Sbjct: 446 VKIPVIAHKYFATQGSSASYMRNFSFYVGYS 476
>ref|NP_207050.1| (NC_000915) outer membrane protein (omp7) [Helicobacter pylori
26695]
pir||D64551 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD07319.1| (AE000544) outer membrane protein (omp7) [Helicobacter pylori
26695]
Length = 487
Score = 48.1 bits (113), Expect = 6e-05
Identities = 45/151 (29%), Positives = 71/151 (46%), Gaps = 28/151 (18%)
Query: 77 RYYFFMDYGNVIL---NKRTGAQANMFTYGFGGDLIVEY----NKNPLYVFSLFYGMQVA 129
RYY F+DYG N + GA N+ TYG G D + + LF+G Q+A
Sbjct: 343 RYYGFLDYGYANFGDTNLKVGA--NLVTYGVGTDFLYNVYERSRRRERTTIGLFFGAQIA 400
Query: 130 ENTWTISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVGFK--FQTVLFHH---DASIEVG 184
TW+ + + + S Q +K+S+F+ L +G + F F+ D IE G
Sbjct: 401 GQTWSTN-------VTNLLSGQRPDVKSSSFQFLFDLGVRTNFAKTNFNKHRLDQGIEFG 453
Query: 185 IKWP------FAFEYDSA-FVRLFSVFISHT 208
+K P FA + SA ++R FS ++ ++
Sbjct: 454 VKIPVIAHKYFATQGSSASYMRNFSFYVGYS 484
>ref|NP_206927.1| (NC_000915) outer membrane protein (omp4) [Helicobacter pylori
26695]
pir||G64535 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD07197.1| (AE000534) outer membrane protein (omp4) [Helicobacter pylori
26695]
Length = 286
Score = 47.4 bits (111), Expect = 1e-04
Identities = 33/115 (28%), Positives = 57/115 (48%), Gaps = 14/115 (12%)
Query: 75 YSRYYFFMDYGNVILNKRTGAQANMFTYGFGGDLIVE---YNKNPLYVFSLFYGMQVAEN 131
Y +YY + DYG + + R G+Q+ MF YG G D++ +N+ L+ F F G+ +
Sbjct: 143 YYKYYTYNDYG--MRDARKGSQSFMFGYGAGTDVLFNPAIFNRENLH-FGFFLGVAIGGT 199
Query: 132 TWTISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVGFKFQTVLFHHDASIEVGIK 186
+W + + + D++R S SNF++L G + T E+G+K
Sbjct: 200 SWGPTNYYFKDLADEYRG----SFHPSNFQVLVNGGIRLGT----KHQGFEIGLK 246
>emb|CAB42877.1| (Y18995) HopV protein [Helicobacter pylori]
Length = 248
Score = 47.0 bits (110), Expect = 1e-04
Identities = 44/164 (26%), Positives = 70/164 (41%), Gaps = 40/164 (24%)
Query: 58 GASFSLGW-EINPTNYWFYSRYYFFMDY---------------------------GNVIL 89
GA F +G+ + WF +RYY F DY GN ++
Sbjct: 57 GAGFEVGYKQFFGKKKWFGARYYGFFDYAHNRFGVMKKGIPVGESGFIYNSFSFGGNTLM 116
Query: 90 NKRTGA---QANMFTYGFGGDLIVEYNKNPLYVFSLFYGMQVAENTW--TISKHSANFII 144
+ + N+FTYG G D + + VF G+Q+A ++W +ISK A++
Sbjct: 117 ERDSYQGQYYVNLFTYGVGLDTLWNFVNKENMVFGFVVGIQLAGDSWATSISKEIASYA- 175
Query: 145 DDWRSIQGFSLKTSNFRMLGLVGFKFQTVLFHHDASIEVGIKWP 188
+ S +NF+ L G + T + H+ S+E+GIK P
Sbjct: 176 ---KHHSNSSYSPANFQFLWKFGVR--THIAKHN-SLELGIKVP 213
>ref|NP_208260.1| (NC_000915) outer membrane protein (omp31) [Helicobacter pylori
26695]
pir||E64703 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD08527.1| (AE000647) outer membrane protein (omp31) [Helicobacter pylori
26695]
Length = 248
Score = 47.0 bits (110), Expect = 1e-04
Identities = 46/164 (28%), Positives = 68/164 (41%), Gaps = 40/164 (24%)
Query: 58 GASFSLGW-EINPTNYWFYSRYYFFMDY--------------------------GNVILN 90
GA F +G+ + WF RYY F DY G L
Sbjct: 57 GAGFEVGYKQFFGKKKWFGMRYYGFFDYAHNRFGVMKKGIPVGDSGFIYNSFSFGGNTLT 116
Query: 91 KRTGAQA----NMFTYGFGGDLIVEYNKNPLYVFSLFYGMQVAENTW--TISKHSANFII 144
+R Q N+FTYG G D + + VF G+Q+A ++W +ISK A++
Sbjct: 117 ERDSYQGQYYVNLFTYGVGLDTLWNFVNKENMVFGFVVGIQLAGDSWATSISKEIAHYA- 175
Query: 145 DDWRSIQGFSLKTSNFRMLGLVGFKFQTVLFHHDASIEVGIKWP 188
+ S +NF+ L G + T + H+ S+E+GIK P
Sbjct: 176 ---KHHSNSSYSPANFQFLWKFGVR--THIAKHN-SLELGIKVP 213
>ref|NP_223377.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||B71904 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06237.1| (AE001498) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 638
Score = 46.6 bits (109), Expect = 2e-04
Identities = 41/154 (26%), Positives = 70/154 (44%), Gaps = 24/154 (15%)
Query: 77 RYYFFMDYGN-VILNKRTGAQANMFTYGFGGDLIVEY------NKNPLYVFSLFYGMQVA 129
RYY F DY + I + + ++++TYG G DL+V + KN LF G+Q+A
Sbjct: 486 RYYGFFDYNHGYIKSSFFNSSSDIWTYGGGSDLLVNFINDSITRKNNKLSVGLFGGIQLA 545
Query: 130 ENTWTISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVGFKFQTVLFHHDAS-------IE 182
TW S++ + + + + SNF+ L +G + S +E
Sbjct: 546 GTTWLNSQY---MNLTAFNNPYSAKVNASNFQFLFNLGLRTNLATAKKKDSERSAQHGVE 602
Query: 183 VGIKWPFAFEYDSAFV-------RLFSVFISHTF 209
+GIK P +F+ RL+SV++++ F
Sbjct: 603 LGIKIPTINTNYYSFLGTKLEYRRLYSVYLNYVF 636
>ref|NP_223380.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||E71904 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06240.1| (AE001498) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 651
Score = 46.6 bits (109), Expect = 2e-04
Identities = 41/154 (26%), Positives = 70/154 (44%), Gaps = 24/154 (15%)
Query: 77 RYYFFMDYGN-VILNKRTGAQANMFTYGFGGDLIVEY------NKNPLYVFSLFYGMQVA 129
RYY F DY + I + + ++++TYG G DL+V + KN LF G+Q+A
Sbjct: 499 RYYGFFDYNHGYIKSSFFNSSSDIWTYGGGSDLLVNFINDSITRKNNKLSVGLFGGIQLA 558
Query: 130 ENTWTISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVGFKFQTVLFHHDAS-------IE 182
TW S++ + + + + SNF+ L +G + S +E
Sbjct: 559 GTTWLNSQY---MNLTAFNNPYSAKVNASNFQFLFNLGLRTNLATAKKKDSERSAQHGVE 615
Query: 183 VGIKWPFAFEYDSAFV-------RLFSVFISHTF 209
+GIK P +F+ RL+SV++++ F
Sbjct: 616 LGIKIPTINTNYYSFLGTKLEYRRLYSVYLNYVF 649
>emb|CAB42974.1| (Y18985) hopZ [Helicobacter pylori]
Length = 699
Score = 46.2 bits (108), Expect = 2e-04
Identities = 43/181 (23%), Positives = 83/181 (45%), Gaps = 28/181 (15%)
Query: 54 RTIEGASFSLGWEINPTNYW-----FYSRYYFFMDYGNVILNKRT-GAQANMFTYGFGGD 107
+T GA +G +I ++ + +RYY F DY + + + +++FTYG G D
Sbjct: 520 QTNNGAMNGIGVQIGYKQFFGEKRKWGARYYGFFDYNHAYIKSSFFNSASDVFTYGVGTD 579
Query: 108 LIVEY-----NKNPLYVFSLFYGMQVAENTWTISKHSANFIIDDWRSIQGFSLKTSNFRM 162
++ + KN F +F G+ +A +W S++ +++ S + + +NF+
Sbjct: 580 VLYNFINDKATKNNKISFGVFGGIALAGTSWLNSQYVNLATFNNFYSAK---MNVANFQF 636
Query: 163 LGLVGFKFQTVLFHHDAS-------IEVGIKWP-FAFEYDS------AFVRLFSVFISHT 208
L +G + AS +E+G+K P Y S + RL+SV++++
Sbjct: 637 LFNLGLRMNLAKNKKKASDHAAQHGVELGVKIPTINTNYYSLLGTQLEYRRLYSVYLNYV 696
Query: 209 F 209
F
Sbjct: 697 F 697
>ref|NP_222838.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||G71970 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD05706.1| (AE001451) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 286
Score = 45.8 bits (107), Expect = 3e-04
Identities = 32/115 (27%), Positives = 57/115 (48%), Gaps = 14/115 (12%)
Query: 75 YSRYYFFMDYGNVILNKRTGAQANMFTYGFGGDLIVE---YNKNPLYVFSLFYGMQVAEN 131
Y +YY + DYG + + R G+Q+ MF YG G D++ +N+ L+ F F G+ +
Sbjct: 143 YYKYYTYNDYG--MRDARKGSQSFMFGYGAGTDVLFNPAIFNRENLH-FGFFLGVAIGGT 199
Query: 132 TWTISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVGFKFQTVLFHHDASIEVGIK 186
+W + + + +++R S SNF++L G + T E+G+K
Sbjct: 200 SWGPTNYYFKDLAEEYRG----SFHPSNFQVLVNGGIRLGT----KHQGFEIGLK 246
>ref|NP_222729.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||A71986 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD05591.1| (AE001440) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 668
Score = 45.4 bits (106), Expect = 4e-04
Identities = 38/153 (24%), Positives = 71/153 (45%), Gaps = 23/153 (15%)
Query: 77 RYYFFMDYGNVILNKRT-GAQANMFTYGFGGDLIVEY-----NKNPLYVFSLFYGMQVAE 130
RYY F DY + + + +++FTYG G D++ + KN F +F G+ +A
Sbjct: 517 RYYGFFDYNHAYIKSSFFNSASDVFTYGVGTDVLYNFINDKTTKNSKISFGVFGGIALAG 576
Query: 131 NTWTISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVGFKFQTVLFHHDAS-------IEV 183
+W S++ +++ S + + +NF+ L +G + AS +E+
Sbjct: 577 TSWLNSQYVNLATFNNFYSAK---MNVANFQFLFNLGLRMNLAKNKKKASDHAAQHGVEL 633
Query: 184 GIKWP-FAFEYDS------AFVRLFSVFISHTF 209
G+K P Y S + RL+SV++++ F
Sbjct: 634 GVKIPTINTNYYSLLGTQLQYRRLYSVYLNYVF 666
>ref|NP_223363.1| (NC_000921) Outer membrane protein/porin [Helicobacter pylori J99]
pir||A71907 outer membrane protein/porin - Helicobacter pylori (strain J99)
gb|AAD06223.1| (AE001496) Outer membrane protein/porin [Helicobacter pylori J99]
Length = 270
Score = 45.4 bits (106), Expect = 4e-04
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 21/140 (15%)
Query: 67 INPTNYWFYSRYYFFMDYGNVILNKRTGA----QANMFTYGFGGDLIVEYNKNPLYVFSL 122
++ T+ WF R Y DYG+ L K+ A Q +M ++G G DL+ + F +
Sbjct: 100 LDMTSKWFGFRVYGLFDYGHADLGKQVYAPNKIQLDMVSWGVGSDLLADIIDKDNASFGI 159
Query: 123 FYGMQVAENTWTISKHSANFIIDDWRSIQG--------------FSLKTSNFRMLGLVGF 168
F G+ + NTW S +AN+ + +G +S TS + F
Sbjct: 160 FGGVAIGGNTWKSS--AANYWKEQIIEAKGPDVCTPTYCNPNAPYSTNTSTVAFQVWLNF 217
Query: 169 KFQTVLFHHDASIEVGIKWP 188
+ ++ H+ +E G++ P
Sbjct: 218 GVRANIYKHN-GVEFGVRVP 236
>emb|CAB42979.1| (Y18991) hopZ [Helicobacter pylori]
Length = 667
Score = 45.1 bits (105), Expect = 5e-04
Identities = 38/153 (24%), Positives = 71/153 (45%), Gaps = 23/153 (15%)
Query: 77 RYYFFMDYGNVILNKRT-GAQANMFTYGFGGDLIVEY-----NKNPLYVFSLFYGMQVAE 130
RYY F DY + + + +++FTYG G D++ + KN F +F G+ +A
Sbjct: 516 RYYGFFDYNHAYIKSSFFNSASDVFTYGVGTDVLYNFINDKATKNNKISFGVFGGIALAG 575
Query: 131 NTWTISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVGFKFQTVLFHHDAS-------IEV 183
+W S++ +++ S + + +NF+ L +G + AS +E+
Sbjct: 576 TSWLNSQYVNLATFNNFYSAK---MNVANFQFLFNLGLRMNLAKNKKKASDHVAQHGVEL 632
Query: 184 GIKWP-FAFEYDS------AFVRLFSVFISHTF 209
G+K P Y S + RL+SV++++ F
Sbjct: 633 GVKIPTINTNYYSLLGTQLEYRRLYSVYLNYVF 665
>emb|CAB43002.1| (Y18990) hopZ [Helicobacter pylori]
Length = 669
Score = 45.1 bits (105), Expect = 5e-04
Identities = 38/153 (24%), Positives = 71/153 (45%), Gaps = 23/153 (15%)
Query: 77 RYYFFMDYGNVILNKRT-GAQANMFTYGFGGDLIVEY-----NKNPLYVFSLFYGMQVAE 130
RYY F DY + + + +++FTYG G D++ + KN F +F G+ +A
Sbjct: 518 RYYGFFDYNHAYIKSSFFNSASDVFTYGVGTDVLYNFINDKATKNNKISFGVFGGIALAG 577
Query: 131 NTWTISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVGFKFQTVLFHHDAS-------IEV 183
+W S++ +++ S + + +NF+ L +G + AS +E+
Sbjct: 578 TSWLNSQYVNLATFNNFYSAK---MNVANFQFLFNLGLRMNLAKNKKKASDHVAQHGVEL 634
Query: 184 GIKWP-FAFEYDS------AFVRLFSVFISHTF 209
G+K P Y S + RL+SV++++ F
Sbjct: 635 GVKIPTINTNYYSLLGTQLQYRRLYSVYLNYVF 667
>ref|NP_224080.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||E71816 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06943.1| (AE001559) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 248
Score = 45.1 bits (105), Expect = 5e-04
Identities = 42/164 (25%), Positives = 65/164 (39%), Gaps = 40/164 (24%)
Query: 58 GASFSLGW-EINPTNYWFYSRYYFFMDY--------------------------GNVILN 90
G F +G+ + WF RYY F DY G L
Sbjct: 57 GPGFEVGYKQFFGKKKWFGMRYYGFFDYAHNRFGVMKKGIPVGESGFIYNSFSFGGNTLT 116
Query: 91 KRTGAQA----NMFTYGFGGDLIVEYNKNPLYVFSLFYGMQVAENTW--TISKHSANFII 144
+R Q N+FTYG G D + + VF G+Q+A ++W +ISK +++
Sbjct: 117 ERDSYQGQYYINLFTYGVGLDTLWNFVNKENMVFGFVVGIQLAGDSWATSISKEIGSYV- 175
Query: 145 DDWRSIQGFSLKTSNFRMLGLVGFKFQTVLFHHDASIEVGIKWP 188
+ S +NF+ L G + + + S+E+GIK P
Sbjct: 176 ---KHHSNSSYSPANFQFLWKFGVRTHIAIHN---SLELGIKVP 213
>ref|NP_207516.1| (NC_000915) outer membrane protein [Helicobacter pylori 26695]
pir||B64610 outer membrane protein - Helicobacter pylori (strain 26695)
Length = 608
Score = 45.1 bits (105), Expect = 5e-04
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 24/154 (15%)
Query: 77 RYYFFMDYGN-VILNKRTGAQANMFTYGFGGDLIVEY------NKNPLYVFSLFYGMQVA 129
RYY F DY + I + + ++++TYG G DL+V KN LF G+Q+A
Sbjct: 456 RYYGFFDYNHGYIKSSFFNSSSDIWTYGGGSDLLVNIINDSITRKNNKLSVGLFGGIQLA 515
Query: 130 ENTWTISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVGFKFQTVL-----FHHDA--SIE 182
TW S++ + + + + +NF+ L +G + H A IE
Sbjct: 516 GTTWLNSQY---VNLTAFNNPYSAKVNATNFQFLFNLGLRTNLATARKKDSEHSAQHGIE 572
Query: 183 VGIKWPFAFEYDSAFV-------RLFSVFISHTF 209
+GIK P +F+ RL+SV++++ F
Sbjct: 573 LGIKIPTITTNYYSFLGTQLQYRRLYSVYLNYVF 606
>emb|CAB53535.1| (Y18992) hopZ [Helicobacter pylori]
Length = 666
Score = 45.1 bits (105), Expect = 5e-04
Identities = 38/153 (24%), Positives = 71/153 (45%), Gaps = 23/153 (15%)
Query: 77 RYYFFMDYGNVILNKRT-GAQANMFTYGFGGDLIVEY-----NKNPLYVFSLFYGMQVAE 130
RYY F DY + + + +++FTYG G D++ + KN F +F G+ +A
Sbjct: 515 RYYGFFDYNHAYIKSSFFNSASDVFTYGVGTDVLYNFINDKATKNNKISFGVFGGIALAG 574
Query: 131 NTWTISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVGFKFQTVLFHHDAS-------IEV 183
+W S++ +++ S + + +NF+ L +G + AS +E+
Sbjct: 575 TSWLNSQYVNLATFNNFYSAK---MNVANFQFLFNLGLRMNLAKNKKKASDHAAQHGVEL 631
Query: 184 GIKWP-FAFEYDS------AFVRLFSVFISHTF 209
G+K P Y S + RL+SV++++ F
Sbjct: 632 GVKIPTINTNYYSLLGAQLQYRRLYSVYLNYVF 664
>ref|NP_206811.1| (NC_000915) outer membrane protein [Helicobacter pylori 26695]
pir||A64521 outer membrane protein - Helicobacter pylori (strain 26695)
Length = 634
Score = 45.1 bits (105), Expect = 5e-04
Identities = 38/153 (24%), Positives = 71/153 (45%), Gaps = 23/153 (15%)
Query: 77 RYYFFMDYGNVILNKRT-GAQANMFTYGFGGDLIVEY-----NKNPLYVFSLFYGMQVAE 130
RYY F DY + + + +++FTYG G D++ + KN F +F G+ +A
Sbjct: 483 RYYGFFDYNHAYIKSSFFNSASDVFTYGVGTDVLYNFINDKATKNNKISFGVFGGIALAG 542
Query: 131 NTWTISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVGFKFQTVLFHHDAS-------IEV 183
+W S++ +++ S + + +NF+ L +G + AS +E+
Sbjct: 543 TSWLNSQYVNLATFNNFYSAK---MNVANFQFLFNLGLRMNLAKNKKKASDHVAQHGVEL 599
Query: 184 GIKWP-FAFEYDS------AFVRLFSVFISHTF 209
G+K P Y S + RL+SV++++ F
Sbjct: 600 GVKIPTINTNYYSLLGTQLQYRRLYSVYLNYVF 632
>emb|CAB42973.1| (Y18984) hopZ [Helicobacter pylori]
Length = 668
Score = 45.1 bits (105), Expect = 5e-04
Identities = 38/153 (24%), Positives = 71/153 (45%), Gaps = 23/153 (15%)
Query: 77 RYYFFMDYGNVILNKRT-GAQANMFTYGFGGDLIVEY-----NKNPLYVFSLFYGMQVAE 130
RYY F DY + + + +++FTYG G D++ + KN F +F G+ +A
Sbjct: 517 RYYGFFDYNHAYIKSSFFNSASDVFTYGVGTDVLYNFINDKATKNNKISFGVFGGIALAG 576
Query: 131 NTWTISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVGFKFQTVLFHHDAS-------IEV 183
+W S++ +++ S + + +NF+ L +G + AS +E+
Sbjct: 577 TSWLNSQYVNLATFNNFYSAK---MNVANFQFLFNLGLRMNLAKNKKKASDHAAQHGVEL 633
Query: 184 GIKWP-FAFEYDS------AFVRLFSVFISHTF 209
G+K P Y S + RL+SV++++ F
Sbjct: 634 GVKIPTINTNYYSLLGTQLQYRRLYSVYLNYVF 666
>ref|NP_207519.1| (NC_000915) outer membrane protein [Helicobacter pylori 26695]
pir||E64610 outer membrane protein - Helicobacter pylori (strain 26695)
Length = 629
Score = 45.1 bits (105), Expect = 5e-04
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 24/154 (15%)
Query: 77 RYYFFMDYGN-VILNKRTGAQANMFTYGFGGDLIVEY------NKNPLYVFSLFYGMQVA 129
RYY F DY + I + + ++++TYG G DL+V KN LF G+Q+A
Sbjct: 477 RYYGFFDYNHGYIKSSFFNSSSDIWTYGGGSDLLVNIINDSITRKNNKLSVGLFGGIQLA 536
Query: 130 ENTWTISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVGFKFQTVL-----FHHDA--SIE 182
TW S++ + + + + +NF+ L +G + H A IE
Sbjct: 537 GTTWLNSQY---VNLTAFNNPYSAKVNATNFQFLFNLGLRTNLATARKKDSEHSAQHGIE 593
Query: 183 VGIKWPFAFEYDSAFV-------RLFSVFISHTF 209
+GIK P +F+ RL+SV++++ F
Sbjct: 594 LGIKIPTITTNYYSFLGTQLQYRRLYSVYLNYVF 627
>ref|NP_223027.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||E71948 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD05881.1| (AE001467) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 245
Score = 43.5 bits (101), Expect = 0.002
Identities = 46/193 (23%), Positives = 79/193 (40%), Gaps = 27/193 (13%)
Query: 37 SQYQVGKM-IMKKYNDLKRTIEGASFSLGWEINPTNYWFYS------RYYFFMDYGNVIL 89
+ YQ G +M N +K+ S +G + N++F+ RY+ F+D+ +
Sbjct: 57 TSYQTGYTNVMTSINSVKKLTNMGSNGIGLVMG-YNHFFHPDKVLGLRYFAFLDWQGYGM 115
Query: 90 NKRTGAQA--NMFTYGFGGDLIVEYNKNPLYV------FSLFYGMQVAENTWTISKHSAN 141
G NM TYG G D I + + Y +F G+ +A N+W I
Sbjct: 116 RYPKGYYGGNNMITYGVGVDAIWNFFQGSFYQDDIGVDIGVFGGIAIAGNSWYIGNKGQE 175
Query: 142 FIIDDWRSIQGFSLKTSNFRMLGLVGFKFQTVLFHHDASIEVGIKWPFA----FEYDSAF 197
+ ++ ++F+ L GFK LF + E+G K+P + D+
Sbjct: 176 LL----GITNSSAVDNTSFQFLFNFGFK---ALFVDEHEFEIGFKFPTLNNKYYTTDALK 228
Query: 198 VRLFSVFISHTFY 210
V++ VF + Y
Sbjct: 229 VQMRRVFAFYVGY 241
>ref|NP_208035.1| (NC_000915) outer membrane protein (omp28) [Helicobacter pylori
26695]
pir||C64675 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD08288.1| (AE000629) outer membrane protein (omp28) [Helicobacter pylori
26695]
Length = 733
Score = 43.5 bits (101), Expect = 0.002
Identities = 40/185 (21%), Positives = 82/185 (43%), Gaps = 32/185 (17%)
Query: 54 RTIEGASFSLGWEINPTNYW-----FYSRYYFFMDYGNVILNKRT-GAQANMFTYGFGGD 107
+T GA +G ++ ++ + +RYY F DY + + + ++++TYGFG D
Sbjct: 550 QTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGAD 609
Query: 108 LIVEY---------NKNPLYVFSLFYGMQVAENTWTISKHSANFIIDDWRSIQGFSLKTS 158
+ + KN LF G+ +A +W S++ ++ ++ + +
Sbjct: 610 ALYNFINDKATNFLGKNNKLSLGLFGGIALAGTSWLNSEYVNLATVN---NVYNAKMNVA 666
Query: 159 NFRMLGLVGFKFQTVLFHHDAS-------IEVGIKWP------FAF-EYDSAFVRLFSVF 204
NF+ L +G + S IE+G+K P ++F + + RL+SV+
Sbjct: 667 NFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVY 726
Query: 205 ISHTF 209
+++ F
Sbjct: 727 LNYVF 731
>ref|NP_207115.1| (NC_000915) outer membrane protein (omp9) [Helicobacter pylori
26695]
pir||E64559 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD07380.1| (AE000549) outer membrane protein (omp9) [Helicobacter pylori
26695]
Length = 745
Score = 43.5 bits (101), Expect = 0.002
Identities = 40/185 (21%), Positives = 82/185 (43%), Gaps = 32/185 (17%)
Query: 54 RTIEGASFSLGWEINPTNYW-----FYSRYYFFMDYGNVILNKRT-GAQANMFTYGFGGD 107
+T GA +G ++ ++ + +RYY F DY + + + ++++TYGFG D
Sbjct: 562 QTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGAD 621
Query: 108 LIVEY---------NKNPLYVFSLFYGMQVAENTWTISKHSANFIIDDWRSIQGFSLKTS 158
+ + KN LF G+ +A +W S++ ++ ++ + +
Sbjct: 622 ALYNFINDKATNFLGKNNKLSLGLFGGIALAGTSWLNSEYVNLATVN---NVYNAKMNVA 678
Query: 159 NFRMLGLVGFKFQTVLFHHDAS-------IEVGIKWP------FAF-EYDSAFVRLFSVF 204
NF+ L +G + S IE+G+K P ++F + + RL+SV+
Sbjct: 679 NFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVY 738
Query: 205 ISHTF 209
+++ F
Sbjct: 739 LNYVF 743
>gb|AAB97730.1| (AF001389) adhesin-binding fucosylated histo-blood group antigen
[Helicobacter pylori]
Length = 707
Score = 43.1 bits (100), Expect = 0.002
Identities = 40/185 (21%), Positives = 81/185 (43%), Gaps = 32/185 (17%)
Query: 54 RTIEGASFSLGWEINPTNYW-----FYSRYYFFMDYGNVILNKRT-GAQANMFTYGFGGD 107
+T GA +G ++ ++ + +RYY F DY + + + ++++TYGFG D
Sbjct: 524 QTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGAD 583
Query: 108 LIVEY---------NKNPLYVFSLFYGMQVAENTWTISKHSANFIIDDWRSIQGFSLKTS 158
+ + KN LF G+ +A +W S++ + ++ + +
Sbjct: 584 ALYNFINDKATNFLGKNNKLSVGLFGGIALAGTSWLNSEY---VNLATMNNVYNAKMNVA 640
Query: 159 NFRMLGLVGFKFQTVLFHHDAS-------IEVGIKWP------FAF-EYDSAFVRLFSVF 204
NF+ L +G + S IE+G+K P ++F + + RL+SV+
Sbjct: 641 NFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVY 700
Query: 205 ISHTF 209
+++ F
Sbjct: 701 LNYVF 705
>ref|NP_207689.1| (NC_000915) outer membrane protein (omp19) [Helicobacter pylori
26695]
pir||H64631 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD07943.1| (AE000599) outer membrane protein (omp19) [Helicobacter pylori
26695]
Length = 708
Score = 43.1 bits (100), Expect = 0.002
Identities = 40/185 (21%), Positives = 82/185 (43%), Gaps = 32/185 (17%)
Query: 54 RTIEGASFSLGWEINPTNYW-----FYSRYYFFMDYGNVILNKRT-GAQANMFTYGFGGD 107
+T GA +G ++ ++ + +RYY F DY + + + ++++TYGFG D
Sbjct: 525 QTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGAD 584
Query: 108 LIVEY---------NKNPLYVFSLFYGMQVAENTWTISKHSANFIIDDWRSIQGFSLKTS 158
+ + KN LF G+ +A +W S++ ++ ++ + +
Sbjct: 585 ALYNFINDKATNFLGKNNKLSVGLFGGIALAGTSWLNSEYVNLATVN---NVYNAKMNVA 641
Query: 159 NFRMLGLVGFKFQTVLFHHDAS-------IEVGIKWP------FAF-EYDSAFVRLFSVF 204
NF+ L +G + S IE+G+K P ++F + + RL+SV+
Sbjct: 642 NFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVY 701
Query: 205 ISHTF 209
+++ F
Sbjct: 702 LNYVF 706
>gb|AAB97729.1| (AF001388) adhesin-binding fucosylated histo-blood group antigen
[Helicobacter pylori]
Length = 703
Score = 43.1 bits (100), Expect = 0.002
Identities = 40/185 (21%), Positives = 81/185 (43%), Gaps = 32/185 (17%)
Query: 54 RTIEGASFSLGWEINPTNYW-----FYSRYYFFMDYGNVILNKRT-GAQANMFTYGFGGD 107
+T GA +G ++ ++ + +RYY F DY + + + ++++TYGFG D
Sbjct: 520 QTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGAD 579
Query: 108 LIVEY---------NKNPLYVFSLFYGMQVAENTWTISKHSANFIIDDWRSIQGFSLKTS 158
+ + KN LF G+ +A +W S++ + ++ + +
Sbjct: 580 ALYNFINDKATNFLGKNNKLSVGLFGGIALAGTSWLNSEY---VNLATMNNVYNAKMNVA 636
Query: 159 NFRMLGLVGFKFQTVLFHHDAS-------IEVGIKWP------FAF-EYDSAFVRLFSVF 204
NF+ L +G + S IE+G+K P ++F + + RL+SV+
Sbjct: 637 NFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVY 696
Query: 205 ISHTF 209
+++ F
Sbjct: 697 LNYVF 701
>gb|AAC38081.1| (AF033654) adhesin binding fucosylated histo-blood group antigen
[Helicobacter pylori]
Length = 741
Score = 43.1 bits (100), Expect = 0.002
Identities = 40/185 (21%), Positives = 81/185 (43%), Gaps = 32/185 (17%)
Query: 54 RTIEGASFSLGWEINPTNYW-----FYSRYYFFMDYGNVILNKRT-GAQANMFTYGFGGD 107
+T GA +G ++ ++ + +RYY F DY + + + ++++TYGFG D
Sbjct: 558 QTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGAD 617
Query: 108 LIVEY---------NKNPLYVFSLFYGMQVAENTWTISKHSANFIIDDWRSIQGFSLKTS 158
+ + KN LF G+ +A +W S++ + ++ + +
Sbjct: 618 ALYNFINDKATNFLGKNNKLSVGLFGGIALAGTSWLNSEY---VNLATMNNVYNAKMNVA 674
Query: 159 NFRMLGLVGFKFQTVLFHHDAS-------IEVGIKWP------FAF-EYDSAFVRLFSVF 204
NF+ L +G + S IE+G+K P ++F + + RL+SV+
Sbjct: 675 NFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVY 734
Query: 205 ISHTF 209
+++ F
Sbjct: 735 LNYVF 739
>ref|NP_207052.1| (NC_000915) outer membrane protein (omp8) [Helicobacter pylori
26695]
pir||F64551 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD07320.1| (AE000544) outer membrane protein (omp8) [Helicobacter pylori
26695]
Length = 431
Score = 42.4 bits (98), Expect = 0.003
Identities = 27/66 (40%), Positives = 36/66 (53%), Gaps = 7/66 (10%)
Query: 77 RYYFFMDYGNVILNKRTGA-QANMFTYGFGGDLIVE-----YNKNPLYVFSLFYGMQVAE 130
RYY F DYG L + A +AN+FTYG G D + ++ L V +F G+Q+A
Sbjct: 281 RYYAFFDYGFTQLGSLSSAVKANIFTYGAGTDFLWNIFRRVFSDQSLNV-GVFGGIQIAG 339
Query: 131 NTWTIS 136
NTW S
Sbjct: 340 NTWDSS 345
>ref|NP_223551.1| (NC_000921) outer membrane protein - adhesin [Helicobacter pylori
J99]
pir||D71883 outer membrane protein adhesin - Helicobacter pylori (strain J99)
gb|AAD06409.1| (AE001512) outer membrane protein - adhesin [Helicobacter pylori
J99]
Length = 744
Score = 42.0 bits (97), Expect = 0.005
Identities = 41/185 (22%), Positives = 82/185 (44%), Gaps = 32/185 (17%)
Query: 54 RTIEGASFSLGWEINPTNYW-----FYSRYYFFMDYGNVILNKRT-GAQANMFTYGFGGD 107
+T GA +G ++ ++ + +RYY F DY + + + ++++TYGFG D
Sbjct: 561 QTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGAD 620
Query: 108 LIVEY---------NKNPLYVFSLFYGMQVAENTWTISKHSANFIIDDWRSIQGFSLKTS 158
+ + KN LF G+ +A +W S++ + ++ + +
Sbjct: 621 ALYNFINDKATNFLGKNNKLSVGLFGGIALAGTSWLNSEY---VNLATMNNVYNAKMNVA 677
Query: 159 NFRMLGLVGFKFQTVL-----FHHDA--SIEVGIKWP------FAF-EYDSAFVRLFSVF 204
NF+ L +G + H A IE+G+K P ++F + + RL+SV+
Sbjct: 678 NFQFLFNMGVRMNLARPKKKDSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVY 737
Query: 205 ISHTF 209
+++ F
Sbjct: 738 LNYVF 742
>ref|NP_223882.1| (NC_000921) outer membrane protein - adhesin [Helicobacter pylori
J99]
pir||C71840 outer membrane protein adhesin - Helicobacter pylori (strain J99)
gb|AAD06752.1| (AE001544) outer membrane protein - adhesin [Helicobacter pylori
J99]
Length = 703
Score = 42.0 bits (97), Expect = 0.005
Identities = 41/185 (22%), Positives = 82/185 (44%), Gaps = 32/185 (17%)
Query: 54 RTIEGASFSLGWEINPTNYW-----FYSRYYFFMDYGNVILNKRT-GAQANMFTYGFGGD 107
+T GA +G ++ ++ + +RYY F DY + + + ++++TYGFG D
Sbjct: 520 QTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGAD 579
Query: 108 LIVEY---------NKNPLYVFSLFYGMQVAENTWTISKHSANFIIDDWRSIQGFSLKTS 158
+ + KN LF G+ +A +W S++ + ++ + +
Sbjct: 580 ALYNFINDKATNFLGKNNKLSVGLFGGIALAGTSWLNSEY---VNLATMNNVYNAKMNVA 636
Query: 159 NFRMLGLVGFKFQTVL-----FHHDA--SIEVGIKWP------FAF-EYDSAFVRLFSVF 204
NF+ L +G + H A IE+G+K P ++F + + RL+SV+
Sbjct: 637 NFQFLFNMGVRMNLARPKKKDSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVY 696
Query: 205 ISHTF 209
+++ F
Sbjct: 697 LNYVF 701
>emb|CAB42879.1| (Y18997) HopX protein [Helicobacter pylori]
Length = 472
Score = 42.0 bits (97), Expect = 0.005
Identities = 27/66 (40%), Positives = 35/66 (52%), Gaps = 7/66 (10%)
Query: 77 RYYFFMDYGNVILNKRTGA-QANMFTYGFGGDLIVE-----YNKNPLYVFSLFYGMQVAE 130
RYY F DYG L A +AN+FTYG G D + ++ L V +F G+Q+A
Sbjct: 322 RYYAFFDYGFTQLGSLNSAVKANIFTYGAGTDFLWNIFRRVFSDQSLNV-GVFGGIQIAG 380
Query: 131 NTWTIS 136
NTW S
Sbjct: 381 NTWDSS 386
>ref|NP_222959.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||H71957 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD05814.1| (AE001461) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 471
Score = 42.0 bits (97), Expect = 0.005
Identities = 27/66 (40%), Positives = 35/66 (52%), Gaps = 7/66 (10%)
Query: 77 RYYFFMDYGNVILNKRTGA-QANMFTYGFGGDLIVE-----YNKNPLYVFSLFYGMQVAE 130
RYY F DYG L A +AN+FTYG G D + ++ L V +F G+Q+A
Sbjct: 321 RYYAFFDYGFTQLGSLNSAVKANIFTYGAGTDFLWNIFRRVFSDQSLNV-GVFGGIQIAG 379
Query: 131 NTWTIS 136
NTW S
Sbjct: 380 NTWDSS 385
>ref|NP_207968.1| (NC_000915) outer membrane protein (omp27) [Helicobacter pylori
26695]
pir||A64667 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD08221.1| (AE000623) outer membrane protein (omp27) [Helicobacter pylori
26695]
Length = 641
Score = 41.6 bits (96), Expect = 0.006
Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 29/158 (18%)
Query: 77 RYYFFMDYGNVILNKRT-GAQANMFTYGFGGDLIVEY---------NKNPLYVFSLFYGM 126
RYY F DY + + + ++++TYG G DL+ + KN F G+
Sbjct: 486 RYYGFFDYNHAYIKSNFFNSASDVWTYGVGSDLLFNFINDKNTNFLGKNNKISVGFFGGI 545
Query: 127 QVAENTWTISKHSANFI-IDDWRSIQGFSLKTSNFRMLGLVGFKFQTVL-----FHHDA- 179
+A +W ++ F+ + ++ + T+NF+ L +G + HH A
Sbjct: 546 ALAGTSWL----NSQFVNLKTISNVYSAKVNTANFQFLFNLGLRTNLARPKKKDSHHAAQ 601
Query: 180 -SIEVGIKWP------FAF-EYDSAFVRLFSVFISHTF 209
+E+G+K P ++F + + RL+SV++++ F
Sbjct: 602 HGMELGVKIPTINTNYYSFLDTKLEYRRLYSVYLNYVF 639
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.328 0.141 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,682,309
Number of Sequences: 1026957
Number of extensions: 5424900
Number of successful extensions: 13063
Number of sequences better than 1.0e-02: 53
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 13017
Number of HSP's gapped (non-prelim): 58
length of query: 211
length of database: 324,149,939
effective HSP length: 116
effective length of query: 95
effective length of database: 205,022,927
effective search space: 19477178065
effective search space used: 19477178065
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 95 (41.2 bits)