BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646135|ref|NP_208317.1| hypothetical protein
[Helicobacter pylori 26695]
(479 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208317.1| (NC_000915) hypothetical protein [Helicoba... 967 0.0
ref|NP_224134.1| (NC_000921) putative [Helicobacter pylori ... 907 0.0
gb|AAM03037.1|AF487344_11 (AF487344) unknown [Helicobacter ... 61 3e-08
ref|NP_223662.1| (NC_000921) putative [Helicobacter pylori ... 59 2e-07
ref|NP_223663.1| (NC_000921) putative [Helicobacter pylori ... 55 2e-06
ref|NP_103728.1| (NC_002678) serine/threonine kinase [Mesor... 47 5e-04
ref|NP_067375.1| (NM_021400) proteoglycan 4 (megakaryocyte ... 45 0.001
dbj|BAA78425.1| (AB021265) polyprotein [Arabidopsis thaliana] 45 0.001
ref|NP_504584.1| (NM_072183) titin [Caenorhabditis elegans]... 45 0.002
gb|AAM09353.1| (AC117075) hypothetical protein [Dictyosteli... 45 0.002
pir||S30782 integrin homolog - yeast (Saccharomyces cerevis... 45 0.002
gb|AAB00143.1| (L03188) putative [Saccharomyces cerevisiae] 45 0.002
ref|NP_010225.1| (NC_001136) involved intracellular protein... 45 0.002
sp|P25386|USO1_YEAST Intracellular protein transport protei... 45 0.002
emb|CAA98620.1| (Z74105) ORF YDL058w [Saccharomyces cerevis... 45 0.002
gb|AAL92396.1| (AC115611) ATP-dependent RNA helicase [Pyroc... 45 0.002
ref|NP_176154.1| (NM_104638) polyprotein, putative [Arabido... 44 0.003
ref|NP_176146.1| (NM_104630) polyprotein, putative [Arabido... 44 0.003
gb|AAC02666.1| (AF039372) polyprotein [Arabidopsis thaliana] 44 0.004
ref|NP_005924.1| (NM_005933) myeloid/lymphoid or mixed-line... 44 0.004
gb|AAC02664.1| (AF039371) polyprotein [Arabidopsis thaliana] 44 0.004
sp|Q03164|HRX_HUMAN Zinc finger protein HRX (ALL-1) (Tritho... 44 0.004
gb|AAC02669.1| (AF039373) polyprotein [Arabidopsis thaliana] 44 0.004
pir||A44265 trithorax homolog HTX, version 2 - human 44 0.004
ref|XP_016303.4| (XM_016303) similar to Zinc finger protein... 44 0.004
pir||A44264 trithorax homolog HTX, version 1 - human (fragm... 44 0.004
emb|CAA93625.1| (Z69744) ALL-1 protein [Homo sapiens] 44 0.004
gb|AAM43681.1| (AC116985) hypothetical protein [Dictyosteli... 44 0.006
emb|CAA71240.1| (Y10158) homologous to rac/cdc42-activated ... 43 0.007
gb|AAL93008.1| (AC116031) MYOSIN I HEAVY CHAIN KINASE [Dict... 43 0.007
gb|AAC71063.1| (U67716) myosin I heavy chain kinase [Dictyo... 43 0.007
gb|AAL92289.1| (AC115593) hypothetical protein [Dictyosteli... 43 0.009
gb|AAM43752.1| (AC116989) hypothetical protein [Dictyosteli... 43 0.009
>ref|NP_208317.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64710 hypothetical protein HP1527 - Helicobacter pylori (strain 26695)
gb|AAD08574.1| (AE000651) H. pylori predicted coding region HP1527 [Helicobacter
pylori 26695]
Length = 479
Score = 967 bits (2499), Expect = 0.0
Identities = 479/479 (100%), Positives = 479/479 (100%)
Query: 1 MKKSLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKKPRQVLGVYNISPHK 60
MKKSLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKKPRQVLGVYNISPHK
Sbjct: 1 MKKSLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKKPRQVLGVYNISPHK 60
Query: 61 KLTLTITHISTAIVYQPLDEKLSLETTLNPNRPTIPRNTQIVFSSKELKESHPHQMPSLN 120
KLTLTITHISTAIVYQPLDEKLSLETTLNPNRPTIPRNTQIVFSSKELKESHPHQMPSLN
Sbjct: 61 KLTLTITHISTAIVYQPLDEKLSLETTLNPNRPTIPRNTQIVFSSKELKESHPHQMPSLN 120
Query: 121 APMQKPQNKPHSSQQPSQNFSYPEPKLGSKNSKNSLLQPLAIPSKISPTNETQTPTNDTK 180
APMQKPQNKPHSSQQPSQNFSYPEPKLGSKNSKNSLLQPLAIPSKISPTNETQTPTNDTK
Sbjct: 121 APMQKPQNKPHSSQQPSQNFSYPEPKLGSKNSKNSLLQPLAIPSKISPTNETQTPTNDTK 180
Query: 181 PPLKHSSEDQESNLFITPPTEKTLPNNTSNADISENNESNENKDNVEKQAIRDANIKEFA 240
PPLKHSSEDQESNLFITPPTEKTLPNNTSNADISENNESNENKDNVEKQAIRDANIKEFA
Sbjct: 181 PPLKHSSEDQESNLFITPPTEKTLPNNTSNADISENNESNENKDNVEKQAIRDANIKEFA 240
Query: 241 CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSTAENKSGKIITPYTKISVHKTE 300
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSTAENKSGKIITPYTKISVHKTE
Sbjct: 241 CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSTAENKSGKIITPYTKISVHKTE 300
Query: 301 PLEEPQTFEAKNNFAILQARSSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQ 360
PLEEPQTFEAKNNFAILQARSSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQ
Sbjct: 301 PLEEPQTFEAKNNFAILQARSSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQ 360
Query: 361 LVKAIYERPKQDDQVEPTFYETSELAYSSTRKSEITHNELNLNEKFMEFVEVYEGHYLND 420
LVKAIYERPKQDDQVEPTFYETSELAYSSTRKSEITHNELNLNEKFMEFVEVYEGHYLND
Sbjct: 361 LVKAIYERPKQDDQVEPTFYETSELAYSSTRKSEITHNELNLNEKFMEFVEVYEGHYLND 420
Query: 421 IIKESSEYKEWVKNHVRFKEGVCMALEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV 479
IIKESSEYKEWVKNHVRFKEGVCMALEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV
Sbjct: 421 IIKESSEYKEWVKNHVRFKEGVCMALEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV 479
>ref|NP_224134.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71809 hypothetical protein jhp1416 - Helicobacter pylori (strain J99)
gb|AAD06995.1| (AE001564) putative [Helicobacter pylori J99]
Length = 479
Score = 907 bits (2343), Expect = 0.0
Identities = 447/479 (93%), Positives = 461/479 (95%)
Query: 1 MKKSLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKKPRQVLGVYNISPHK 60
MKKSLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSK+PRQVLGVYNISPHK
Sbjct: 1 MKKSLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHK 60
Query: 61 KLTLTITHISTAIVYQPLDEKLSLETTLNPNRPTIPRNTQIVFSSKELKESHPHQMPSLN 120
KLTLTITHISTAIVYQPLDEKLSLETTL+PNRPTIPRNTQIVFSSKELKE H + +PSLN
Sbjct: 61 KLTLTITHISTAIVYQPLDEKLSLETTLSPNRPTIPRNTQIVFSSKELKEPHSNPIPSLN 120
Query: 121 APMQKPQNKPHSSQQPSQNFSYPEPKLGSKNSKNSLLQPLAIPSKISPTNETQTPTNDTK 180
APMQKPQNKP SSQQ QNFSYPE KLGSKNSKNSLLQPL PSK+SPTNE +TPTND
Sbjct: 121 APMQKPQNKPSSSQQSPQNFSYPESKLGSKNSKNSLLQPLVTPSKVSPTNEVKTPTNDAN 180
Query: 181 PPLKHSSEDQESNLFITPPTEKTLPNNTSNADISENNESNENKDNVEKQAIRDANIKEFA 240
PPLKHSS+DQE+NLF+ PPTEKTLPNNTS+AD SENNESNEN+DNVEKQAIRD NIKEFA
Sbjct: 181 PPLKHSSQDQENNLFVAPPTEKTLPNNTSSADASENNESNENRDNVEKQAIRDPNIKEFA 240
Query: 241 CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSTAENKSGKIITPYTKISVHKTE 300
CGKWVYDDENLQAYRPSILKRVD+DK+ TDITPCDYSTAENKSGKIITPYTKISVHKTE
Sbjct: 241 CGKWVYDDENLQAYRPSILKRVDKDKEITTDITPCDYSTAENKSGKIITPYTKISVHKTE 300
Query: 301 PLEEPQTFEAKNNFAILQARSSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQ 360
PLE+PQTFEAKNNFAILQARSSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQ
Sbjct: 301 PLEDPQTFEAKNNFAILQARSSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQ 360
Query: 361 LVKAIYERPKQDDQVEPTFYETSELAYSSTRKSEITHNELNLNEKFMEFVEVYEGHYLND 420
LVKAIYERPKQDDQVEPTFYETSELAYSSTRKSEIT NELNLNEKFMEFVEVYEGHYLND
Sbjct: 361 LVKAIYERPKQDDQVEPTFYETSELAYSSTRKSEITRNELNLNEKFMEFVEVYEGHYLND 420
Query: 421 IIKESSEYKEWVKNHVRFKEGVCMALEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV 479
IIKESSEYKEWVKNHVRFKEGVCMALEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV
Sbjct: 421 IIKESSEYKEWVKNHVRFKEGVCMALEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV 479
>gb|AAM03037.1|AF487344_11 (AF487344) unknown [Helicobacter pylori]
Length = 735
Score = 61.2 bits (147), Expect = 3e-08
Identities = 59/230 (25%), Positives = 99/230 (42%), Gaps = 32/230 (13%)
Query: 239 FACGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSTAENKSGKIITPYTKISVH- 297
+ACGKW +D+ L+AYRP+ ++ D ++T CDY++ K KII PYTKI+V
Sbjct: 456 YACGKWQFDNAKLEAYRPTQIRIFDTVSNQYYNVTGCDYTSDMGKVPKIIHPYTKINVES 515
Query: 298 --KTEPLEEPQTFEAKN-------NFAILQARSSTEKCKRARARKDG----TTRQCY--L 342
K E + + T N F I + ++ + DG T Y
Sbjct: 516 SVKDEDVGDLDTISGSNYDLPQYTTFEIQEMSLNSSQWITTSYCDDGWGSWTKTHSYTGY 575
Query: 343 IEEPLK--QAWESEYEITTQLVKAIYERPKQDDQVEPTFYETSELAYSSTRK-------S 393
+ L+ W + Y+ Q Y RP+ + + Y+T + Y S + S
Sbjct: 576 SQGNLRTLAKWVTRYQTINQGTTIGYIRPRNEGDSD-AVYDTYKYYYVSQAQKTLKRFPS 634
Query: 394 EITHNELNLNEKF---MEFVEVYEGHYLNDIIKE---SSEYKEWVKNHVR 437
I N NL++++ E + + LN+ +K+ + E+ W + R
Sbjct: 635 TIYVNTPNLSDEYRKNFELTVLSQKLNLNNGVKQLINTQEFTNWQATYYR 684
>ref|NP_223662.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71868 hypothetical protein jhp0945 - Helicobacter pylori (strain J99)
gb|AAD06523.1| (AE001524) putative [Helicobacter pylori J99]
Length = 668
Score = 58.5 bits (140), Expect = 2e-07
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 216 NNESNENKDNVEKQAIR---DANIKEFACGKWVYDDENLQAYRPSILKRVDEDKQTATDI 272
N+ +N NK + + I + +EFACG+W Y+D L+A RP++LK ++ ++
Sbjct: 492 NDPNNPNKQEILNRGIATQLSSQYQEFACGQWEYNDAKLEAKRPTMLKSYNKLNGEWVEV 551
Query: 273 TPCDYSTAENKSGKIITPY 291
TPC++ A KSG +++PY
Sbjct: 552 TPCNFE-AGIKSGAVVSPY 569
>ref|NP_223663.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71868 hypothetical protein jhp0946 - Helicobacter pylori (strain J99)
gb|AAD06524.1| (AE001524) putative [Helicobacter pylori J99]
Length = 145
Score = 55.1 bits (131), Expect = 2e-06
Identities = 24/81 (29%), Positives = 45/81 (54%)
Query: 345 EPLKQAWESEYEITTQLVKAIYERPKQDDQVEPTFYETSELAYSSTRKSEITHNELNLNE 404
+P W + Y+ TT Y RP QD++ PT Y + R + NEL+L+
Sbjct: 18 DPSITDWSATYKTTTTQTTQPYLRPAQDNEKHPTTYNLITTQTTINRTQSVLKNELHLSN 77
Query: 405 KFMEFVEVYEGHYLNDIIKES 425
++++VE+++G+Y ++ +K+S
Sbjct: 78 DYLKYVEIHQGYYKDNDLKQS 98
>ref|NP_103728.1| (NC_002678) serine/threonine kinase [Mesorhizobium loti]
dbj|BAB49514.1| (AP002999) serine/threonine kinase [Mesorhizobium loti]
Length = 857
Score = 47.0 bits (110), Expect = 5e-04
Identities = 53/243 (21%), Positives = 95/243 (38%), Gaps = 18/243 (7%)
Query: 76 QPLDEKLSLETTLNPNRPTI-PRNTQIVFSSKELKESHPHQMPSLNAPMQKPQNKPHSSQ 134
QP ++ P PT+ P T + E P Q P+ N P ++ +
Sbjct: 479 QPAEQAPVAPPVGKPASPTVQPETTANSQAQAPPVEIKPAQNPTANPPKTSAPSQAGAES 538
Query: 135 QPSQNFSYPEPKLGSKNSKNSLLQPLAIP-SKISPTNETQTPTNDTKPPLKHSSEDQESN 193
+P+Q + P + S +L LA P + P +E++ P T PP+K ++ ++
Sbjct: 539 KPAQQANPPATE-PSATELVEILSKLARPEASPPPASESRLPAQPTSPPVKPAAPPPTAS 597
Query: 194 LFITP-----PTEKTLPNNTSNADISENNESNENKDNVEKQAIRDANIKEFAC--GKWVY 246
P PT+ P+ A ++ E+ E NV K A+ A + A WV
Sbjct: 598 QPTPPTSPSEPTQTAQPSQQPQAPVTTRPENTEVAINVPKPAVPPAKPVDEAAQRASWVR 657
Query: 247 DDENLQAYRPSILKRVDED---KQTATDITPCDYSTAENKSGKIITPYTKISVHKTEPLE 303
D + S+ + + AT + P + + +S + P + + +E
Sbjct: 658 DFSGGDCFYASLTSQTASSAAIEGLATAVQPFEQMLNDFRSRFHLEPDINVRL-----IE 712
Query: 304 EPQ 306
+PQ
Sbjct: 713 QPQ 715
>ref|NP_067375.1| (NM_021400) proteoglycan 4 (megakaryocyte stimulating factor,
articular superficial zone protein); proteoglycan 3
(megakaryocyte stimulating factor, articular superficial
zone protein) [Mus musculus]
dbj|BAA92310.1| (AB034730) This gene is isolated by means of differential display
method using ttw, an excellent mouse model for ectopic
ossification.~similar to megakaryocyte stimulating
factor precursor and cartilage superficial zone protein
[Mus musculus]
Length = 1054
Score = 45.4 bits (106), Expect = 0.001
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 14/164 (8%)
Query: 76 QPLDEKLSLETTLNPNRPTIPRNTQIVFSSKELKESHPHQM-PSLNAPMQKPQNKPH--- 131
+P K TT PT P+ + +S + + P + AP ++ QNKP
Sbjct: 590 EPTTPKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQNKPEETT 649
Query: 132 -SSQQPSQNFSYPEPKLGSKNSKNSLLQPLAIPSKISPTNETQTP----TNDTKPPLKHS 186
+S+ + + +P+ +K K + +P P K + T + +TP T PLK +
Sbjct: 650 PASEDSDDSKTTLKPQKPTKAPKPT-KKPTKAPKKPTSTKKPKTPKTRKPKTTPAPLKTT 708
Query: 187 SEDQESN---LFITPPTEKTLPNNTSNADISENNESNENKDNVE 227
S E N L + PT T+P T N + +E N +E+ D E
Sbjct: 709 SATPELNTTPLEVMLPT-TTIPKQTPNPETAEVNPDHEDADGGE 751
>dbj|BAA78425.1| (AB021265) polyprotein [Arabidopsis thaliana]
Length = 1447
Score = 45.4 bits (106), Expect = 0.001
Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 19/153 (12%)
Query: 90 PNRPTIP-RNTQIVFSSKELKESHPHQMPSLNAPMQKPQNKPHSSQQP---------SQN 139
P+ P+ P RN+Q+ SS L S PS P QN P + QP SQN
Sbjct: 781 PSSPSAPSRNSQV--SSSNLDSSFSSSFPSSPEPTAPRQNGPQPTTQPTQTQTQTHSSQN 838
Query: 140 FSYPEPKLGSKNSKNSLLQPLAIPSKISPTNETQTPTNDTKPPLKHSSEDQESNLFITPP 199
S P + S + L Q L+ P++ S + +P+ T +S S L PP
Sbjct: 839 TSQNNP---TNESPSQLAQSLSTPAQSS----SSSPSPTTSASSSSTSPTPPSILIHPPP 891
Query: 200 TEKTLPNNTSNADISENNESNENKDNVEKQAIR 232
+ NN + A I+ ++ K + K ++
Sbjct: 892 PLAQIVNNNNQAPINTHSMGTRAKAGIIKPNLK 924
>ref|NP_504584.1| (NM_072183) titin [Caenorhabditis elegans]
gb|AAC25885.2| (U80022) Hypothetical protein F12F3.3 [Caenorhabditis elegans]
Length = 3484
Score = 45.1 bits (105), Expect = 0.002
Identities = 76/343 (22%), Positives = 138/343 (40%), Gaps = 59/343 (17%)
Query: 148 GSKNSKNSLLQPLA--IPSKISPTNE---------TQTPTNDTK-----PPLKHSSEDQE 191
GS ++K L++PL+ + K+ E ++TP + ++ PP K S + E
Sbjct: 539 GSADAKTPLVEPLSASVSMKVESAKEKAEFSFKRRSETPDDKSRKKEGLPPAKKSEKKDE 598
Query: 192 SNLFITPPTEKTLPNNTSNAD---ISENNESNENKDNV----EKQA----------IRDA 234
TE + + D ISE S++NK V EK A I +
Sbjct: 599 VTAE-KQSTEALIESKKKEVDESKISEQQPSDKNKSEVVGVPEKAAGPETKKDVSEIEEV 657
Query: 235 NIKEFACGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSTAENKSGKIITPYTKI 294
K+ K D ++ + + ++LK D+DK + D+T T E+++ +
Sbjct: 658 PKKKTIKKKTEKSDSSI-SQKSNVLKPADDDKSKSDDVTDKSKKTTEDQTKVATDSKLEK 716
Query: 295 SVHKTEPLEEPQTFEAKNNFAILQARSSTEKCKRARARKDGTTRQCYLIEEPLKQAWESE 354
+ T+ +E + K+ +L + TEK ++K T + EP K A ESE
Sbjct: 717 AADTTKQIETETVVDDKSKKKVL--KKKTEKSDSFISQKSETPP----VVEPTKPA-ESE 769
Query: 355 YEITTQLVKAIYERPKQDDQVEPTFYETSELAYSSTRKSEITHNELNLNEKFMEFVEVYE 414
+ ++ KA K+ +V+ +E+A ++ ++ + EV
Sbjct: 770 AQKIAEVNKA-----KKQKEVDDNLKREAEVAAKKIADEKL---KIEAEANIKKTAEV-- 819
Query: 415 GHYLNDIIKESSEYKEWVK--NHVRFKEGVCMALEIEEQPRAK 455
+ K+ E E +K V K+ LE+E+Q + K
Sbjct: 820 -----EAAKKQKEKDEQLKLETEVVSKKSAAEKLELEKQAQIK 857
>gb|AAM09353.1| (AC117075) hypothetical protein [Dictyostelium discoideum]
Length = 740
Score = 45.1 bits (105), Expect = 0.002
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 4/132 (3%)
Query: 98 NTQIVFS--SKELKESHPHQMPSLNAPMQKPQNKPHSSQQPSQNFSYPEPKLGSKNSKNS 155
NT V S S + K S Q Q+ Q+K + QQP+QN + + K S +S
Sbjct: 307 NTSSVSSVPSNKKKSSKTKQKSKPLTIQQQQQHKSNYHQQPNQNSQHLQSKPNSPILISS 366
Query: 156 LL--QPLAIPSKISPTNETQTPTNDTKPPLKHSSEDQESNLFITPPTEKTLPNNTSNADI 213
L Q + P + SPT +P ++ P ++ + +N+ NN +N +
Sbjct: 367 PLNSQQNSSPPQPSPTQSFLSPPQYSQSPQNNNFNNNNNNISNNNNNNNNNNNNNNNNNN 426
Query: 214 SENNESNENKDN 225
+ NN +N N +N
Sbjct: 427 NNNNNNNNNNNN 438
>pir||S30782 integrin homolog - yeast (Saccharomyces cerevisiae)
Length = 1726
Score = 44.7 bits (104), Expect = 0.002
Identities = 69/325 (21%), Positives = 132/325 (40%), Gaps = 27/325 (8%)
Query: 165 KISPTNETQTPTNDTKPPLKHSSEDQESNLFITPPTEKTLPNNTSNADISENNES--NEN 222
KI N ++ + +K +++ S Q + + TEK + D+ NES
Sbjct: 856 KIQCNNLSKEKEHISKELVEYKSRFQSHDNLVAKLTEKLKSLANNYKDMQAENESLIKAV 915
Query: 223 KDNVEKQAIRDANIKEFACGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSTAEN 282
+++ + +I+ +N++ + EN Q R SI K +++ K+T +D+
Sbjct: 916 EESKNESSIQLSNLQN-KIDSMSQEKENFQIERGSIEKNIEQLKKTISDLEQTKEEIISK 974
Query: 283 KSGKIITPYTKISVHKTEPLEEPQTFEAKNNFAILQARSSTEKCKRARAR----KDGTTR 338
++IS+ K E LE T +N I + + E+ + A K+
Sbjct: 975 SDSSKDEYESQISLLK-EKLETATTANDENVNKISELTKTREELEAELAAYKNLKNELET 1033
Query: 339 QCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQ-------VEPTFYETSELAYSSTR 391
+ E+ LK+ E+E + + ++ E + Q +E E +LA +
Sbjct: 1034 KLETSEKALKEVKENEEHLKEEKIQLEKEATETKQQLNSLRANLESLEKEHEDLAAQLKK 1093
Query: 392 -KSEITHNELNLNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMALE--I 448
+ +I + E NE+ + LND I + + E +K EG A++
Sbjct: 1094 YEEQIANKERQYNEEISQ---------LNDEITSTQQENESIKKKNDELEGEVKAMKSTS 1144
Query: 449 EEQPRAKSTPLSIENSRVVCVKKGN 473
EEQ K + + N ++ +KK N
Sbjct: 1145 EEQSNLKKSEIDALNLQIKELKKKN 1169
>gb|AAB00143.1| (L03188) putative [Saccharomyces cerevisiae]
Length = 1015
Score = 44.7 bits (104), Expect = 0.002
Identities = 69/325 (21%), Positives = 132/325 (40%), Gaps = 27/325 (8%)
Query: 165 KISPTNETQTPTNDTKPPLKHSSEDQESNLFITPPTEKTLPNNTSNADISENNES--NEN 222
KI N ++ + +K +++ S Q + + TEK + D+ NES
Sbjct: 145 KIQCNNLSKEKEHISKELVEYKSRFQSHDNLVAKLTEKLKSLANNYKDMQAENESLIKAV 204
Query: 223 KDNVEKQAIRDANIKEFACGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSTAEN 282
+++ + +I+ +N++ + EN Q R SI K +++ K+T +D+
Sbjct: 205 EESKNESSIQLSNLQN-KIDSMSQEKENFQIERGSIEKNIEQLKKTISDLEQTKEEIISK 263
Query: 283 KSGKIITPYTKISVHKTEPLEEPQTFEAKNNFAILQARSSTEKCKRARAR----KDGTTR 338
++IS+ K E LE T +N I + + E+ + A K+
Sbjct: 264 SDSSKDEYESQISLLK-EKLETATTANDENVNKISELTKTREELEAELAAYKNLKNELET 322
Query: 339 QCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQ-------VEPTFYETSELAYSSTR 391
+ E+ LK+ E+E + + ++ E + Q +E E +LA +
Sbjct: 323 KLETSEKALKEVKENEEHLKEEKIQLEKEATETKQQLNSLRANLESLEKEHEDLAAQLKK 382
Query: 392 -KSEITHNELNLNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMALE--I 448
+ +I + E NE+ + LND I + + E +K EG A++
Sbjct: 383 YEEQIANKERQYNEEISQ---------LNDEITSTQQENESIKKKNDELEGEVKAMKSTS 433
Query: 449 EEQPRAKSTPLSIENSRVVCVKKGN 473
EEQ K + + N ++ +KK N
Sbjct: 434 EEQSNLKKSEIDALNLQIKELKKKN 458
>ref|NP_010225.1| (NC_001136) involved intracellular protein transport, coiled-coil
protein necessary for protein transport from ER to Golgi;
Uso1p [Saccharomyces cerevisiae]
pir||S67593 transport protein USO1 - yeast (Saccharomyces cerevisiae)
emb|CAA98621.1| (Z74106) ORF YDL058w [Saccharomyces cerevisiae]
Length = 1790
Score = 44.7 bits (104), Expect = 0.002
Identities = 69/325 (21%), Positives = 132/325 (40%), Gaps = 27/325 (8%)
Query: 165 KISPTNETQTPTNDTKPPLKHSSEDQESNLFITPPTEKTLPNNTSNADISENNES--NEN 222
KI N ++ + +K +++ S Q + + TEK + D+ NES
Sbjct: 926 KIQCNNLSKEKEHISKELVEYKSRFQSHDNLVAKLTEKLKSLANNYKDMQAENESLIKAV 985
Query: 223 KDNVEKQAIRDANIKEFACGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSTAEN 282
+++ + +I+ +N++ + EN Q R SI K +++ K+T +D+
Sbjct: 986 EESKNESSIQLSNLQN-KIDSMSQEKENFQIERGSIEKNIEQLKKTISDLEQTKEEIISK 1044
Query: 283 KSGKIITPYTKISVHKTEPLEEPQTFEAKNNFAILQARSSTEKCKRARAR----KDGTTR 338
++IS+ K E LE T +N I + + E+ + A K+
Sbjct: 1045 SDSSKDEYESQISLLK-EKLETATTANDENVNKISELTKTREELEAELAAYKNLKNELET 1103
Query: 339 QCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQ-------VEPTFYETSELAYSSTR 391
+ E+ LK+ E+E + + ++ E + Q +E E +LA +
Sbjct: 1104 KLETSEKALKEVKENEEHLKEEKIQLEKEATETKQQLNSLRANLESLEKEHEDLAAQLKK 1163
Query: 392 -KSEITHNELNLNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMALE--I 448
+ +I + E NE+ + LND I + + E +K EG A++
Sbjct: 1164 YEEQIANKERQYNEEISQ---------LNDEITSTQQENESIKKKNDELEGEVKAMKSTS 1214
Query: 449 EEQPRAKSTPLSIENSRVVCVKKGN 473
EEQ K + + N ++ +KK N
Sbjct: 1215 EEQSNLKKSEIDALNLQIKELKKKN 1239
>sp|P25386|USO1_YEAST Intracellular protein transport protein USO1
emb|CAA38253.1| (X54378) Uso1 protein [Saccharomyces cerevisiae]
Length = 1790
Score = 44.7 bits (104), Expect = 0.002
Identities = 69/325 (21%), Positives = 132/325 (40%), Gaps = 27/325 (8%)
Query: 165 KISPTNETQTPTNDTKPPLKHSSEDQESNLFITPPTEKTLPNNTSNADISENNES--NEN 222
KI N ++ + +K +++ S Q + + TEK + D+ NES
Sbjct: 926 KIQCNNLSKEKEHISKELVEYKSRFQSHDNLVAKLTEKLKSLANNYKDMQAENESLIKAV 985
Query: 223 KDNVEKQAIRDANIKEFACGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSTAEN 282
+++ + +I+ +N++ + EN Q R SI K +++ K+T +D+
Sbjct: 986 EESKNESSIQLSNLQN-KIDSMSQEKENFQIERGSIEKNIEQLKKTISDLEQTKEEIISK 1044
Query: 283 KSGKIITPYTKISVHKTEPLEEPQTFEAKNNFAILQARSSTEKCKRARAR----KDGTTR 338
++IS+ K E LE T +N I + + E+ + A K+
Sbjct: 1045 SDSSKDEYESQISLLK-EKLETATTANDENVNKISELTKTREELEAELAAYKNLKNELET 1103
Query: 339 QCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQ-------VEPTFYETSELAYSSTR 391
+ E+ LK+ E+E + + ++ E + Q +E E +LA +
Sbjct: 1104 KLETSEKALKEVKENEEHLKEEKIQLEKEATETKQQLNSLRANLESLEKEHEDLAAQLKK 1163
Query: 392 -KSEITHNELNLNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMALE--I 448
+ +I + E NE+ + LND I + + E +K EG A++
Sbjct: 1164 YEEQIANKERQYNEEISQ---------LNDEITSTQQENESIKKKNDELEGEVKAMKSTS 1214
Query: 449 EEQPRAKSTPLSIENSRVVCVKKGN 473
EEQ K + + N ++ +KK N
Sbjct: 1215 EEQSNLKKSEIDALNLQIKELKKKN 1239
>emb|CAA98620.1| (Z74105) ORF YDL058w [Saccharomyces cerevisiae]
Length = 1268
Score = 44.7 bits (104), Expect = 0.002
Identities = 69/325 (21%), Positives = 132/325 (40%), Gaps = 27/325 (8%)
Query: 165 KISPTNETQTPTNDTKPPLKHSSEDQESNLFITPPTEKTLPNNTSNADISENNES--NEN 222
KI N ++ + +K +++ S Q + + TEK + D+ NES
Sbjct: 404 KIQCNNLSKEKEHISKELVEYKSRFQSHDNLVAKLTEKLKSLANNYKDMQAENESLIKAV 463
Query: 223 KDNVEKQAIRDANIKEFACGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSTAEN 282
+++ + +I+ +N++ + EN Q R SI K +++ K+T +D+
Sbjct: 464 EESKNESSIQLSNLQN-KIDSMSQEKENFQIERGSIEKNIEQLKKTISDLEQTKEEIISK 522
Query: 283 KSGKIITPYTKISVHKTEPLEEPQTFEAKNNFAILQARSSTEKCKRARAR----KDGTTR 338
++IS+ K E LE T +N I + + E+ + A K+
Sbjct: 523 SDSSKDEYESQISLLK-EKLETATTANDENVNKISELTKTREELEAELAAYKNLKNELET 581
Query: 339 QCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQ-------VEPTFYETSELAYSSTR 391
+ E+ LK+ E+E + + ++ E + Q +E E +LA +
Sbjct: 582 KLETSEKALKEVKENEEHLKEEKIQLEKEATETKQQLNSLRANLESLEKEHEDLAAQLKK 641
Query: 392 -KSEITHNELNLNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMALE--I 448
+ +I + E NE+ + LND I + + E +K EG A++
Sbjct: 642 YEEQIANKERQYNEEISQ---------LNDEITSTQQENESIKKKNDELEGEVKAMKSTS 692
Query: 449 EEQPRAKSTPLSIENSRVVCVKKGN 473
EEQ K + + N ++ +KK N
Sbjct: 693 EEQSNLKKSEIDALNLQIKELKKKN 717
>gb|AAL92396.1| (AC115611) ATP-dependent RNA helicase [Pyrococcus abyssi]
[Dictyostelium discoideum]
Length = 1789
Score = 44.7 bits (104), Expect = 0.002
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 26/155 (16%)
Query: 85 ETTLNPNRPTIPRNTQIVFSSKELKESHPHQMPSLNAPMQKPQNKPHSSQQPSQNFSYPE 144
++ LNP + P F ++ + Q Q+ Q + QQP Q F Y
Sbjct: 43 QSPLNPFKKASP------FKQQQPQPIQRQQQQQQQQQQQQQQPQQQQQQQPFQPFQYQS 96
Query: 145 P-KLGSKNSKNSLLQPLAIPSKISPTNETQTPTNDT--KPPLKHSSEDQE-----SNLFI 196
P K+ + N P+++P I+ + T T T++T K P + Q+ +N+
Sbjct: 97 PKKIQNPN------VPISLPQPINNNSTTTTTTSNTPYKSPQTIQQQQQQQQQNVNNIKN 150
Query: 197 TPP------TEKTLPNNTSNADISENNESNENKDN 225
T P ++++ NN +N + + NN +N N +N
Sbjct: 151 TSPYRQQTEQQQSVYNNNNNNNNNNNNNNNNNNNN 185
>ref|NP_176154.1| (NM_104638) polyprotein, putative [Arabidopsis thaliana]
gb|AAK62788.1|AC027036_9 (AC027036) polyprotein, putative [Arabidopsis thaliana]
dbj|BAB84015.1| (AB078516) polyprotein [Arabidopsis thaliana]
Length = 1466
Score = 44.3 bits (103), Expect = 0.003
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 19/149 (12%)
Query: 90 PNRPTIP-RNTQIVFSSKELKESHPHQMPSLNAPMQKPQNKPHSSQQP---------SQN 139
P+ P+ P RN+Q+ SS L S PS P QN P + QP SQN
Sbjct: 800 PSSPSAPFRNSQV--SSSNLDSSFSSSFPSSPEPTAPRQNGPQPTTQPTQTQTQTHSSQN 857
Query: 140 FSYPEPKLGSKNSKNSLLQPLAIPSKISPTNETQTPTNDTKPPLKHSSEDQESNLFITPP 199
S P + S + L Q L+ P++ S + +P+ T +S S L PP
Sbjct: 858 TSQNNP---TNESPSQLAQSLSTPAQSS----SSSPSPTTSASSSSTSPTPPSILIHPPP 910
Query: 200 TEKTLPNNTSNADISENNESNENKDNVEK 228
+ NN + A ++ ++ K + K
Sbjct: 911 PLAQIVNNNNQAPLNTHSMGTRAKAGIIK 939
>ref|NP_176146.1| (NM_104630) polyprotein, putative [Arabidopsis thaliana]
gb|AAK62793.1|AC027036_14 (AC027036) polyprotein, putative [Arabidopsis thaliana]
Length = 1466
Score = 44.3 bits (103), Expect = 0.003
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 19/149 (12%)
Query: 90 PNRPTIP-RNTQIVFSSKELKESHPHQMPSLNAPMQKPQNKPHSSQQP---------SQN 139
P+ P+ P RN+Q+ SS L S PS P QN P + QP SQN
Sbjct: 800 PSSPSAPFRNSQV--SSSNLDSSFSSSFPSSPEPTAPRQNGPQPTTQPTQTQTQTHSSQN 857
Query: 140 FSYPEPKLGSKNSKNSLLQPLAIPSKISPTNETQTPTNDTKPPLKHSSEDQESNLFITPP 199
S P + S + L Q L+ P++ S + +P+ T +S S L PP
Sbjct: 858 TSQNNP---TNESPSQLAQSLSTPAQSS----SSSPSPTTSASSSSTSPTPPSILIHPPP 910
Query: 200 TEKTLPNNTSNADISENNESNENKDNVEK 228
+ NN + A ++ ++ K + K
Sbjct: 911 PLAQIVNNNNQAPLNTHSMGTRAKAGIIK 939
>gb|AAC02666.1| (AF039372) polyprotein [Arabidopsis thaliana]
Length = 1451
Score = 43.9 bits (102), Expect = 0.004
Identities = 33/123 (26%), Positives = 53/123 (42%), Gaps = 12/123 (9%)
Query: 77 PLDEKLSLETTLNPNRPTIPRNTQIVFSSKELKESHPH-QMPSLNAPMQKPQNKPHSSQQ 135
PL LSL T P++ + + +S E+ P P L+ Q+PQ P S Q
Sbjct: 812 PLQPSLSLSPTSPITSPSLSEESLVGHNS----ETGPTGSSPPLSPQPQRPQ--PQSPQS 865
Query: 136 PSQNFSYPEPKLGSKNSKNSLLQPLAIPSKISPTNETQTPTNDTKPPLKHSSEDQESNLF 195
S + S P+P NS N P ++ ++ + P N PP++H+ + N
Sbjct: 866 TSPHSSSPQP-----NSPNPQHSPRSLTPTLTSSPSPSPPPNPNPPPIQHTMRTRSKNNI 920
Query: 196 ITP 198
+ P
Sbjct: 921 VKP 923
>ref|NP_005924.1| (NM_005933) myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); Myeloid/lymphoid or mixed-lineage
leukemia (trithorax (Drosophila); myeloid/lymphoid or
mixed-lineage leukemia (trithorax (Drosophila) homolog)
[Homo sapiens]
gb|AAA58669.1| (L04284) HRX [Homo sapiens]
Length = 3969
Score = 43.9 bits (102), Expect = 0.004
Identities = 64/228 (28%), Positives = 93/228 (40%), Gaps = 32/228 (14%)
Query: 30 TSPHKGTFKAKVLDSKKPRQVLGVYNISPH---KKLTLTITHISTAIVYQ-------PLD 79
T PH K++ + Q L V P+ +K+ LT + ST V + P+
Sbjct: 3067 TPPHLKPATEKLIVVNQNMQPLYVLQTLPNGVTQKIQLTSSVSSTPSVMETNTSVLGPMG 3126
Query: 80 EKLSLETTLNPNRPTIPRNTQIVFSSKE---LKESHPHQMPSLNAPMQKPQNKPHSSQQP 136
L+L T LNP+ PT +Q +F S L SH + S A Q P+ S P
Sbjct: 3127 GGLTLTTGLNPSLPT----SQSLFPSASKGLLPMSHHQHLHSFPAATQS-SFPPNISNPP 3181
Query: 137 SQNF----SYPEPKL--GSKNSKNSLLQPLAIPS---KISPTNETQTPTNDTKPPLKHSS 187
S P+P+L + + L +A PS K P + QT N P S
Sbjct: 3182 SGLLIGVQPPPDPQLLVSESSQRTDLSTTVATPSSGLKKRPISRLQTRKNKKLAPSSTPS 3241
Query: 188 E----DQESNLFITPPTEKTLPNNTSNADI-SENNESNENKDNVEKQA 230
D SN+ + T LPN+ S D+ S N S+ N+ K++
Sbjct: 3242 NIAPSDVVSNMTLINFTPSQLPNHPSLLDLGSLNTSSHRTVPNIIKRS 3289
>gb|AAC02664.1| (AF039371) polyprotein [Arabidopsis thaliana]
Length = 1451
Score = 43.9 bits (102), Expect = 0.004
Identities = 33/123 (26%), Positives = 53/123 (42%), Gaps = 12/123 (9%)
Query: 77 PLDEKLSLETTLNPNRPTIPRNTQIVFSSKELKESHPH-QMPSLNAPMQKPQNKPHSSQQ 135
PL LSL T P++ + + +S E+ P P L+ Q+PQ P S Q
Sbjct: 812 PLQPSLSLSPTSPITSPSLSEESLVGHNS----ETGPTGSSPPLSPQPQRPQ--PQSPQS 865
Query: 136 PSQNFSYPEPKLGSKNSKNSLLQPLAIPSKISPTNETQTPTNDTKPPLKHSSEDQESNLF 195
S + S P+P NS N P ++ ++ + P N PP++H+ + N
Sbjct: 866 TSPHSSSPQP-----NSPNPQHSPRSLTPTLTSSPSPSPPPNPNPPPIQHTMRTRSKNNI 920
Query: 196 ITP 198
+ P
Sbjct: 921 VKP 923
>sp|Q03164|HRX_HUMAN Zinc finger protein HRX (ALL-1) (Trithorax-like protein)
Length = 3969
Score = 43.9 bits (102), Expect = 0.004
Identities = 64/228 (28%), Positives = 93/228 (40%), Gaps = 32/228 (14%)
Query: 30 TSPHKGTFKAKVLDSKKPRQVLGVYNISPH---KKLTLTITHISTAIVYQ-------PLD 79
T PH K++ + Q L V P+ +K+ LT + ST V + P+
Sbjct: 3067 TPPHLKPATEKLIVVNQNMQPLYVLQTLPNGVTQKIQLTSSVSSTPSVMETNTSVLGPMG 3126
Query: 80 EKLSLETTLNPNRPTIPRNTQIVFSSKE---LKESHPHQMPSLNAPMQKPQNKPHSSQQP 136
L+L T LNP+ PT +Q +F S L SH + S A Q P+ S P
Sbjct: 3127 GGLTLTTGLNPSLPT----SQSLFPSASKGLLPMSHHQHLHSFPAATQS-SFPPNISNPP 3181
Query: 137 SQNF----SYPEPKL--GSKNSKNSLLQPLAIPS---KISPTNETQTPTNDTKPPLKHSS 187
S P+P+L + + L +A PS K P + QT N P S
Sbjct: 3182 SGLLIGVQPPPDPQLLVSESSQRTDLSTTVATPSSGLKKRPISRLQTRKNKKLAPSSTPS 3241
Query: 188 E----DQESNLFITPPTEKTLPNNTSNADI-SENNESNENKDNVEKQA 230
D SN+ + T LPN+ S D+ S N S+ N+ K++
Sbjct: 3242 NIAPSDVVSNMTLINFTPSQLPNHPSLLDLGSLNTSSHRTVPNIIKRS 3289
>gb|AAC02669.1| (AF039373) polyprotein [Arabidopsis thaliana]
Length = 1451
Score = 43.9 bits (102), Expect = 0.004
Identities = 33/123 (26%), Positives = 53/123 (42%), Gaps = 12/123 (9%)
Query: 77 PLDEKLSLETTLNPNRPTIPRNTQIVFSSKELKESHPH-QMPSLNAPMQKPQNKPHSSQQ 135
PL LSL T P++ + + +S E+ P P L+ Q+PQ P S Q
Sbjct: 812 PLQPSLSLSPTSPITSPSLSEESLVGHNS----ETGPTGSSPPLSPQPQRPQ--PQSPQS 865
Query: 136 PSQNFSYPEPKLGSKNSKNSLLQPLAIPSKISPTNETQTPTNDTKPPLKHSSEDQESNLF 195
S + S P+P NS N P ++ ++ + P N PP++H+ + N
Sbjct: 866 TSPHSSSPQP-----NSPNPQHSPRSLTPTLTSSPSPSPPPNPNPPPIQHTMRTRSKNNI 920
Query: 196 ITP 198
+ P
Sbjct: 921 VKP 923
>pir||A44265 trithorax homolog HTX, version 2 - human
Length = 3968
Score = 43.9 bits (102), Expect = 0.004
Identities = 64/228 (28%), Positives = 93/228 (40%), Gaps = 32/228 (14%)
Query: 30 TSPHKGTFKAKVLDSKKPRQVLGVYNISPH---KKLTLTITHISTAIVYQ-------PLD 79
T PH K++ + Q L V P+ +K+ LT + ST V + P+
Sbjct: 3066 TPPHLKPATEKLIVVNQNMQPLYVLQTLPNGVTQKIQLTSSVSSTPSVMETNTSVLGPMG 3125
Query: 80 EKLSLETTLNPNRPTIPRNTQIVFSSKE---LKESHPHQMPSLNAPMQKPQNKPHSSQQP 136
L+L T LNP+ PT +Q +F S L SH + S A Q P+ S P
Sbjct: 3126 GGLTLTTGLNPSLPT----SQSLFPSASKGLLPMSHHQHLHSFPAATQS-SFPPNISNPP 3180
Query: 137 SQNF----SYPEPKL--GSKNSKNSLLQPLAIPS---KISPTNETQTPTNDTKPPLKHSS 187
S P+P+L + + L +A PS K P + QT N P S
Sbjct: 3181 SGLLIGVQPPPDPQLLVSESSQRTDLSTTVATPSSGLKKRPISRLQTRKNKKLAPSSTPS 3240
Query: 188 E----DQESNLFITPPTEKTLPNNTSNADI-SENNESNENKDNVEKQA 230
D SN+ + T LPN+ S D+ S N S+ N+ K++
Sbjct: 3241 NIAPSDVVSNMTLINFTPSQLPNHPSLLDLGSLNTSSHRTVPNIIKRS 3288
>ref|XP_016303.4| (XM_016303) similar to Zinc finger protein HRX (ALL-1)
(Trithorax-like protein) [Homo sapiens]
Length = 3811
Score = 43.9 bits (102), Expect = 0.004
Identities = 64/228 (28%), Positives = 93/228 (40%), Gaps = 32/228 (14%)
Query: 30 TSPHKGTFKAKVLDSKKPRQVLGVYNISPH---KKLTLTITHISTAIVYQ-------PLD 79
T PH K++ + Q L V P+ +K+ LT + ST V + P+
Sbjct: 3103 TPPHLKPATEKLIVVNQNMQPLYVLQTLPNGVTQKIQLTSSVSSTPSVMETNTSVLGPMG 3162
Query: 80 EKLSLETTLNPNRPTIPRNTQIVFSSKE---LKESHPHQMPSLNAPMQKPQNKPHSSQQP 136
L+L T LNP+ PT +Q +F S L SH + S A Q P+ S P
Sbjct: 3163 GGLTLTTGLNPSLPT----SQSLFPSASKGLLPMSHHQHLHSFPAATQS-SFPPNISNPP 3217
Query: 137 SQNF----SYPEPKL--GSKNSKNSLLQPLAIPS---KISPTNETQTPTNDTKPPLKHSS 187
S P+P+L + + L +A PS K P + QT N P S
Sbjct: 3218 SGLLIGVQPPPDPQLLVSESSQRTDLSTTVATPSSGLKKRPISRLQTRKNKKLAPSSTPS 3277
Query: 188 E----DQESNLFITPPTEKTLPNNTSNADI-SENNESNENKDNVEKQA 230
D SN+ + T LPN+ S D+ S N S+ N+ K++
Sbjct: 3278 NIAPSDVVSNMTLINFTPSQLPNHPSLLDLGSLNTSSHRTVPNIIKRS 3325
>pir||A44264 trithorax homolog HTX, version 1 - human (fragment)
Length = 3910
Score = 43.9 bits (102), Expect = 0.004
Identities = 64/228 (28%), Positives = 93/228 (40%), Gaps = 32/228 (14%)
Query: 30 TSPHKGTFKAKVLDSKKPRQVLGVYNISPH---KKLTLTITHISTAIVYQ-------PLD 79
T PH K++ + Q L V P+ +K+ LT + ST V + P+
Sbjct: 3008 TPPHLKPATEKLIVVNQNMQPLYVLQTLPNGVTQKIQLTSSVSSTPSVMETNTSVLGPMG 3067
Query: 80 EKLSLETTLNPNRPTIPRNTQIVFSSKE---LKESHPHQMPSLNAPMQKPQNKPHSSQQP 136
L+L T LNP+ PT +Q +F S L SH + S A Q P+ S P
Sbjct: 3068 GGLTLTTGLNPSLPT----SQSLFPSASKGLLPMSHHQHLHSFPAATQS-SFPPNISNPP 3122
Query: 137 SQNF----SYPEPKL--GSKNSKNSLLQPLAIPS---KISPTNETQTPTNDTKPPLKHSS 187
S P+P+L + + L +A PS K P + QT N P S
Sbjct: 3123 SGLLIGVQPPPDPQLLVSESSQRTDLSTTVATPSSGLKKRPISRLQTRKNKKLAPSSTPS 3182
Query: 188 E----DQESNLFITPPTEKTLPNNTSNADI-SENNESNENKDNVEKQA 230
D SN+ + T LPN+ S D+ S N S+ N+ K++
Sbjct: 3183 NIAPSDVVSNMTLINFTPSQLPNHPSLLDLGSLNTSSHRTVPNIIKRS 3230
>emb|CAA93625.1| (Z69744) ALL-1 protein [Homo sapiens]
Length = 4005
Score = 43.9 bits (102), Expect = 0.004
Identities = 64/228 (28%), Positives = 93/228 (40%), Gaps = 32/228 (14%)
Query: 30 TSPHKGTFKAKVLDSKKPRQVLGVYNISPH---KKLTLTITHISTAIVYQ-------PLD 79
T PH K++ + Q L V P+ +K+ LT + ST V + P+
Sbjct: 3103 TPPHLKPATEKLIVVNQNMQPLYVLQTLPNGVTQKIQLTSSVSSTPSVMETNTSVLGPMG 3162
Query: 80 EKLSLETTLNPNRPTIPRNTQIVFSSKE---LKESHPHQMPSLNAPMQKPQNKPHSSQQP 136
L+L T LNP+ PT +Q +F S L SH + S A Q P+ S P
Sbjct: 3163 GGLTLTTGLNPSLPT----SQSLFPSASKGLLPMSHHQHLHSFPAATQS-SFPPNISNPP 3217
Query: 137 SQNF----SYPEPKL--GSKNSKNSLLQPLAIPS---KISPTNETQTPTNDTKPPLKHSS 187
S P+P+L + + L +A PS K P + QT N P S
Sbjct: 3218 SGLLIGVQPPPDPQLLVSESSQRTDLSTTVATPSSGLKKRPISRLQTRKNKKLAPSSTPS 3277
Query: 188 E----DQESNLFITPPTEKTLPNNTSNADI-SENNESNENKDNVEKQA 230
D SN+ + T LPN+ S D+ S N S+ N+ K++
Sbjct: 3278 NIAPSDVVSNMTLINFTPSQLPNHPSLLDLGSLNTSSHRTVPNIIKRS 3325
>gb|AAM43681.1| (AC116985) hypothetical protein [Dictyostelium discoideum]
Length = 894
Score = 43.5 bits (101), Expect = 0.006
Identities = 41/160 (25%), Positives = 68/160 (41%), Gaps = 18/160 (11%)
Query: 67 THISTAIVYQPLDEKLSLETTLNPNRPTIPRNTQIVFSSKELKESHPHQMPSLNAPMQKP 126
TH++T + Q E + T ++ + +P IV + ++ + Q P P+++
Sbjct: 694 THVNTYLKNQKKAEAATSSTQVSTPQQQLP----IVGTPQQSVGTPQQQQP----PIEQT 745
Query: 127 QNKPHSSQQPSQNFSYPEPKLGSKNSKNSL-LQPLAIPSKISPTNETQTPTNDTKPPLKH 185
P QQP Q PE +L S+ + +L Q P Q D P +
Sbjct: 746 PPPPQQQQQPPQ--LTPEQQLASQQQQATLQFQQYQQPQDQQQQQYQQYQQYD---PQQQ 800
Query: 186 SSEDQESNLFITPPTEKTLPNNTSNADISENNESNENKDN 225
+ Q+ PP + T PNN +N +I+ N E+ N DN
Sbjct: 801 QQQPQQQ----PPPPQTTPPNNENNNNINNNLENTNNNDN 836
>emb|CAA71240.1| (Y10158) homologous to rac/cdc42-activated ste20 /pak kinase
[Dictyostelium discoideum]
Length = 824
Score = 43.1 bits (100), Expect = 0.007
Identities = 35/121 (28%), Positives = 51/121 (41%), Gaps = 13/121 (10%)
Query: 117 PSLNAPMQKPQNKPHSSQQPSQNFSYPEPKLGSKNSKNSLLQPLAIPSKI-SPTNETQTP 175
P P Q+PQ P S+ + + P P N+K L P A+P+ + S +TP
Sbjct: 185 PPQPTPSQQPQQSPSSASHNNTQHNIPSPP-PLPNNKPKKLAPTAVPAGLGSIIGGPKTP 243
Query: 176 T---NDTKPPLKHSSEDQESNLFITPPTEK--------TLPNNTSNADISENNESNENKD 224
T P L S+ + + TP T T PNN+ IS +N +N N +
Sbjct: 244 AISPGSTSPSLGSSNGNIPISTTSTPITPTPPISVPLATSPNNSHKDSISNSNSNNNNNN 303
Query: 225 N 225
N
Sbjct: 304 N 304
>gb|AAL93008.1| (AC116031) MYOSIN I HEAVY CHAIN KINASE [Dictyostelium discoideum]
Length = 852
Score = 43.1 bits (100), Expect = 0.007
Identities = 35/121 (28%), Positives = 51/121 (41%), Gaps = 13/121 (10%)
Query: 117 PSLNAPMQKPQNKPHSSQQPSQNFSYPEPKLGSKNSKNSLLQPLAIPSKI-SPTNETQTP 175
P P Q+PQ P S+ + + P P N+K L P A+P+ + S +TP
Sbjct: 185 PPQPTPSQQPQQSPSSASHNNTQHNIPSPP-PLPNNKPKKLAPTAVPAGLGSIIGGPKTP 243
Query: 176 T---NDTKPPLKHSSEDQESNLFITPPTEK--------TLPNNTSNADISENNESNENKD 224
T P L S+ + + TP T T PNN+ IS +N +N N +
Sbjct: 244 AISPGSTSPSLGSSNGNIPISTTSTPITPTPPISVPLATSPNNSHKDSISNSNSNNNNNN 303
Query: 225 N 225
N
Sbjct: 304 N 304
>gb|AAC71063.1| (U67716) myosin I heavy chain kinase [Dictyostelium discoideum]
Length = 851
Score = 43.1 bits (100), Expect = 0.007
Identities = 35/121 (28%), Positives = 51/121 (41%), Gaps = 13/121 (10%)
Query: 117 PSLNAPMQKPQNKPHSSQQPSQNFSYPEPKLGSKNSKNSLLQPLAIPSKI-SPTNETQTP 175
P P Q+PQ P S+ + + P P N+K L P A+P+ + S +TP
Sbjct: 185 PPQPTPSQQPQQSPSSASHNNTQHNIPSPP-PLPNNKPKKLAPTAVPAGLGSIIGGPKTP 243
Query: 176 T---NDTKPPLKHSSEDQESNLFITPPTEK--------TLPNNTSNADISENNESNENKD 224
T P L S+ + + TP T T PNN+ IS +N +N N +
Sbjct: 244 AISPGSTSPSLGSSNGNIPISTTSTPITPTPPISVPLATSPNNSHKDSISNSNSNNNNNN 303
Query: 225 N 225
N
Sbjct: 304 N 304
>gb|AAL92289.1| (AC115593) hypothetical protein [Dictyostelium discoideum]
Length = 1324
Score = 42.7 bits (99), Expect = 0.009
Identities = 41/181 (22%), Positives = 71/181 (38%), Gaps = 10/181 (5%)
Query: 63 TLTITHISTAIVYQPLDEKLSLETTLNPNRPTIPRNTQIVFSSKELKESHPHQMPSLNAP 122
T T T+ + ++ Y + N + + P +T KE + N
Sbjct: 155 TDTSTYSTRSVDYYNTSFDIDHHHNNNSHNTSNPSSTNSSLREKEKSKRTSIASDLSNFV 214
Query: 123 MQK---PQNKPHSSQQPSQNFSYPEPKLGSKNSKNS---LLQPLAIPSKISPTNETQTPT 176
M+K HS + N + +GS NS +S L P+ P SP Q+P
Sbjct: 215 MKKLHVSHKDNHSVNNNNNNSNNSSSNIGSPNSSDSSSTLQSPIQSPPIQSPP--LQSPP 272
Query: 177 NDTKPPLKHSSEDQESNLFITPPTEKTLPNNTSNADISENNESNENKDNVEKQAIRDANI 236
+ P ++ +N ITP + NN +N + + NN +N N +N ++ + +
Sbjct: 273 LQSSLPQSQQKQNNNNNNLITPAIN--INNNNNNNNNNNNNNNNNNSNNSSSKSTPTSPL 330
Query: 237 K 237
K
Sbjct: 331 K 331
>gb|AAM43752.1| (AC116989) hypothetical protein [Dictyostelium discoideum]
Length = 823
Score = 42.7 bits (99), Expect = 0.009
Identities = 31/138 (22%), Positives = 53/138 (37%), Gaps = 20/138 (14%)
Query: 149 SKNSKNSLLQPLAIPSKISPTNETQTPTNDTKPPLKHSSEDQESNLFITPPTEKTLPNNT 208
+ N+ NS QP+ + KI+P N + N + +++ + +N + NN
Sbjct: 459 NNNNNNSTSQPIVVLPKIAPNNNNNSNNNINSNNINNNNNNNTNNTNNNTNNSNSNNNNN 518
Query: 209 SNADISENNESNENKDNVEKQAIRDANIKEFACGKWVYDDENLQAYRPSILKRVDEDKQT 268
+N + + NN +N N +N + N N +Y PS Q
Sbjct: 519 NNNNNNNNNNNNNNNNNSNNNNNSNGN--------------NNNSYSPS------NSNQQ 558
Query: 269 ATDITPCDYSTAENKSGK 286
T T +TA N+ K
Sbjct: 559 QTTTTTTTTTTAANRGRK 576
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.309 0.127 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 317,824,152
Number of Sequences: 1026957
Number of extensions: 13966116
Number of successful extensions: 58628
Number of sequences better than 1.0e-02: 33
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 58347
Number of HSP's gapped (non-prelim): 137
length of query: 479
length of database: 324,149,939
effective HSP length: 125
effective length of query: 354
effective length of database: 195,780,314
effective search space: 69306231156
effective search space used: 69306231156
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 99 (42.7 bits)