BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646139|ref|NP_208321.1| hypothetical protein
[Helicobacter pylori 26695]
         (79 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_224137.1|  (NC_000921) putative [Helicobacter pylori ...   152  8e-37

>ref|NP_224137.1| (NC_000921) putative [Helicobacter pylori J99]
 ref|NP_208321.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 sp|O26059|YF31_HELPY Hypothetical protein HP1531/JHP1419
 pir||C64711 hypothetical protein (HP1531, jhp1419) - Helicobacter pylori
 gb|AAD08575.1| (AE000651) H. pylori predicted coding region HP1531 [Helicobacter
          pylori 26695]
 gb|AAD06998.1| (AE001564) putative [Helicobacter pylori J99]
          Length = 79

 Score =  152 bits (384), Expect = 8e-37
 Identities = 79/79 (100%), Positives = 79/79 (100%)

Query: 1  MFEKIRKILADIEDSQNEIEMLLKLANLSLGDFIEIKRGSMDMPKGVNEAFFTQLSEEVE 60
          MFEKIRKILADIEDSQNEIEMLLKLANLSLGDFIEIKRGSMDMPKGVNEAFFTQLSEEVE
Sbjct: 1  MFEKIRKILADIEDSQNEIEMLLKLANLSLGDFIEIKRGSMDMPKGVNEAFFTQLSEEVE 60

Query: 61 RLKELINALNKIKKGLLVF 79
          RLKELINALNKIKKGLLVF
Sbjct: 61 RLKELINALNKIKKGLLVF 79



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.319    0.140    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,855,506
Number of Sequences: 1026957
Number of extensions: 1263020
Number of successful extensions: 5843
Number of sequences better than 1.0e-02: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5842
Number of HSP's gapped (non-prelim): 1
length of query: 79
length of database: 324,149,939
effective HSP length: 55
effective length of query: 24
effective length of database: 267,667,304
effective search space: 6424015296
effective search space used: 6424015296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 90 (39.3 bits)