BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646141|ref|NP_208323.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(231 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208323.1| (NC_000915) conserved hypothetical protein... 467 e-131
sp|O26061|YF33_HELPY Hypothetical protein HP1533 416 e-115
ref|NP_224139.1| (NC_000921) putative [Helicobacter pylori ... 404 e-112
ref|NP_281248.1| (NC_002163) hypothetical protein Cj0026c [... 222 3e-57
ref|NP_378212.1| (NC_003106) 257aa long conserved hypotheti... 72 5e-12
ref|NP_142699.1| (NC_000961) hypothetical protein [Pyrococc... 67 2e-10
ref|NP_341866.1| (NC_002754) Conserved hypothetical protein... 67 2e-10
ref|NP_563341.1| (NC_003366) conserved hypothetical protein... 67 2e-10
ref|NP_578269.1| (NC_003413) hypothetical protein [Pyrococc... 65 8e-10
ref|NP_657640.1| (NC_003995) Thy1, Thymidylate synthase com... 64 2e-09
ref|NP_126978.1| (NC_000868) hypothetical protein [Pyrococc... 62 5e-09
ref|NP_228259.1| (NC_000853) thy1 protein [Thermotoga marit... 61 9e-09
pdb|1KQ4|C Chain C, Crystal Structure Of Thy1-Complementing... 61 9e-09
ref|NP_542556.1| (NC_003345) putative phage C31 protein gp1... 59 3e-08
dbj|BAB88822.1| (AB083130) hypothetical protein [Corynebact... 59 3e-08
sp|P40111|YDAP_CORGL Hypothetical 28.0 kDa protein in dapB-... 54 2e-06
ref|NP_601178.1| (NC_003450) COG1351:Predicted alternative ... 54 2e-06
ref|NP_302061.1| (NC_002677) putative mycobacteriophage pro... 53 2e-06
ref|NP_148355.1| (NC_000854) hypothetical protein [Aeropyru... 52 4e-06
ref|NP_280185.1| (NC_002607) Vng1325c [Halobacterium sp. NR... 52 7e-06
sp|Q9HQ52|YD25_HALN1 Hypothetical protein Vng1325c 52 7e-06
sp|Q9C4Y9|THY1_HALSA Thymidylate synthase complementing pro... 51 9e-06
pir||B40626 probable 2,3-dihydrodipicolinate N-C6-lyase (cy... 51 1e-05
ref|NP_046863.1| (NC_001900) gp48 [Mycobacteriophage D29] >... 49 6e-05
ref|NP_047961.1| (NC_001978) gp16 [Bacteriophage phi-C31] >... 48 1e-04
ref|NP_213443.1| (NC_000918) thymidylate synthase complemen... 44 0.001
ref|NP_039712.1| (NC_001335) Hypothetical protein [Mycobact... 43 0.002
sp|P15808|THY1_DICDI Thy1 protein >gi|279686|pir||YXDOTC th... 42 0.005
>ref|NP_208323.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||E64711 conserved hypothetical protein HP1533 - Helicobacter pylori
(strain 26695)
gb|AAD08571.1| (AE000651) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 231
Score = 467 bits (1201), Expect = e-131
Identities = 231/231 (100%), Positives = 231/231 (100%)
Query: 1 MWITQETWLKALPWNKKRYRSQIMEVICKHYTPLDIASQAIRTCWQSFEYSDDGGCKDKE 60
MWITQETWLKALPWNKKRYRSQIMEVICKHYTPLDIASQAIRTCWQSFEYSDDGGCKDKE
Sbjct: 1 MWITQETWLKALPWNKKRYRSQIMEVICKHYTPLDIASQAIRTCWQSFEYSDDGGCKDKE 60
Query: 61 LIHRVGNIFRHSSTLEHLYYNFEIKGLSRGALQELSRHRIASLSVKSSRYTLRELKEVES 120
LIHRVGNIFRHSSTLEHLYYNFEIKGLSRGALQELSRHRIASLSVKSSRYTLRELKEVES
Sbjct: 61 LIHRVGNIFRHSSTLEHLYYNFEIKGLSRGALQELSRHRIASLSVKSSRYTLRELKEVES 120
Query: 121 FLPLNETNLERAKEFLVFVDNEKVNAMSVLALENLRILLSEHNIKNDLAKYAMPESYKTH 180
FLPLNETNLERAKEFLVFVDNEKVNAMSVLALENLRILLSEHNIKNDLAKYAMPESYKTH
Sbjct: 121 FLPLNETNLERAKEFLVFVDNEKVNAMSVLALENLRILLSEHNIKNDLAKYAMPESYKTH 180
Query: 181 LAYSINARSLQNFLTLRSSNKALKEMQDLAKALFDALPGEHQYLFEDCLKH 231
LAYSINARSLQNFLTLRSSNKALKEMQDLAKALFDALPGEHQYLFEDCLKH
Sbjct: 181 LAYSINARSLQNFLTLRSSNKALKEMQDLAKALFDALPGEHQYLFEDCLKH 231
>sp|O26061|YF33_HELPY Hypothetical protein HP1533
Length = 208
Score = 416 bits (1069), Expect = e-115
Identities = 208/208 (100%), Positives = 208/208 (100%)
Query: 24 MEVICKHYTPLDIASQAIRTCWQSFEYSDDGGCKDKELIHRVGNIFRHSSTLEHLYYNFE 83
MEVICKHYTPLDIASQAIRTCWQSFEYSDDGGCKDKELIHRVGNIFRHSSTLEHLYYNFE
Sbjct: 1 MEVICKHYTPLDIASQAIRTCWQSFEYSDDGGCKDKELIHRVGNIFRHSSTLEHLYYNFE 60
Query: 84 IKGLSRGALQELSRHRIASLSVKSSRYTLRELKEVESFLPLNETNLERAKEFLVFVDNEK 143
IKGLSRGALQELSRHRIASLSVKSSRYTLRELKEVESFLPLNETNLERAKEFLVFVDNEK
Sbjct: 61 IKGLSRGALQELSRHRIASLSVKSSRYTLRELKEVESFLPLNETNLERAKEFLVFVDNEK 120
Query: 144 VNAMSVLALENLRILLSEHNIKNDLAKYAMPESYKTHLAYSINARSLQNFLTLRSSNKAL 203
VNAMSVLALENLRILLSEHNIKNDLAKYAMPESYKTHLAYSINARSLQNFLTLRSSNKAL
Sbjct: 121 VNAMSVLALENLRILLSEHNIKNDLAKYAMPESYKTHLAYSINARSLQNFLTLRSSNKAL 180
Query: 204 KEMQDLAKALFDALPGEHQYLFEDCLKH 231
KEMQDLAKALFDALPGEHQYLFEDCLKH
Sbjct: 181 KEMQDLAKALFDALPGEHQYLFEDCLKH 208
>ref|NP_224139.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZJ93|YF33_HELPJ Hypothetical protein JHP1421
pir||A71810 hypothetical protein jhp1421 - Helicobacter pylori (strain J99)
gb|AAD07000.1| (AE001564) putative [Helicobacter pylori J99]
Length = 208
Score = 404 bits (1037), Expect = e-112
Identities = 201/208 (96%), Positives = 205/208 (97%)
Query: 24 MEVICKHYTPLDIASQAIRTCWQSFEYSDDGGCKDKELIHRVGNIFRHSSTLEHLYYNFE 83
MEVICKHYTPLDIASQAIRTCWQSFEYSDDGGCKD++LIHRVGNIFRHSSTLEHLYYNFE
Sbjct: 1 MEVICKHYTPLDIASQAIRTCWQSFEYSDDGGCKDRDLIHRVGNIFRHSSTLEHLYYNFE 60
Query: 84 IKGLSRGALQELSRHRIASLSVKSSRYTLRELKEVESFLPLNETNLERAKEFLVFVDNEK 143
IKGLSRGALQELSRHRIASLSVKSSRYTLRELKEVESFLPLNETNLERAKEFLVFVD+EK
Sbjct: 61 IKGLSRGALQELSRHRIASLSVKSSRYTLRELKEVESFLPLNETNLERAKEFLVFVDDEK 120
Query: 144 VNAMSVLALENLRILLSEHNIKNDLAKYAMPESYKTHLAYSINARSLQNFLTLRSSNKAL 203
VN MSVLALENLR+LLSEHNIKNDLAKYAMPESYKTHLAYSINARSLQN LTLRSSNKAL
Sbjct: 121 VNEMSVLALENLRVLLSEHNIKNDLAKYAMPESYKTHLAYSINARSLQNLLTLRSSNKAL 180
Query: 204 KEMQDLAKALFDALPGEHQYLFEDCLKH 231
KEMQDLAKALFDALP EHQYLFEDCLKH
Sbjct: 181 KEMQDLAKALFDALPYEHQYLFEDCLKH 208
>ref|NP_281248.1| (NC_002163) hypothetical protein Cj0026c [Campylobacter jejuni]
sp|Q9PJ85|Y026_CAMJE Hypothetical protein Cj0026c
pir||E81418 hypothetical protein Cj0026c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72519.1| (AL139074) hypothetical protein Cj0026c [Campylobacter jejuni]
Length = 207
Score = 222 bits (565), Expect = 3e-57
Identities = 116/206 (56%), Positives = 149/206 (72%), Gaps = 4/206 (1%)
Query: 24 MEVICKHYTPLDIASQAIRTCWQSFEYSDDGGCKDKELIHRVGNIFRHSSTLEHLYYNFE 83
M++ +TPL + S A RTCWQSFE D GG KDKELI RVGN F+H+STLEHL Y F
Sbjct: 1 MQITLLFHTPLSVCSHATRTCWQSFEKGDCGGEKDKELIDRVGNKFKHASTLEHLNYTFY 60
Query: 84 IKGLSRGALQELSRHRIASLSVKSSRYTLRELKEVESFLPLNETNLERAKEFLVFVDNEK 143
I+G+SR LQE++RHR S SVKS+RYTL+EL+ F + E A +LV NE+
Sbjct: 61 IQGISRACLQEVARHRHTSPSVKSTRYTLKELRNEAEF---KIGDFENASRYLVLCGNEE 117
Query: 144 VNAMSVLALENLRILLSEHNIKNDLAKYAMPESYKTHLAYSINARSLQNFLTLRSSNKAL 203
V+ S+ ALENLR +L + +I D+AKY +PESYKT L +INARSLQNF++LRSS AL
Sbjct: 118 VDNASIKALENLRTIL-QKSISLDIAKYCLPESYKTELTLTINARSLQNFISLRSSKSAL 176
Query: 204 KEMQDLAKALFDALPGEHQYLFEDCL 229
E+++LA ALF+ALP EH+++FE CL
Sbjct: 177 WEIRNLANALFEALPQEHKFIFEHCL 202
>ref|NP_378212.1| (NC_003106) 257aa long conserved hypothetical protein [Sulfolobus
tokodaii]
dbj|BAB67321.1| (AP000989) 257aa long conserved hypothetical protein [Sulfolobus
tokodaii]
Length = 257
Score = 72.0 bits (175), Expect = 5e-12
Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 19/165 (11%)
Query: 73 STLEHLYYNFEIKGLSRGALQELSRHRIASLSVKSSRYTLRELKEV-ESFLPLNETNLE- 130
S LEH Y F I+G+SR A +L RHR+AS + S R+ K + E + P+ ++E
Sbjct: 55 SVLEHSIYTFSIEGISRVASHQLVRHRVASYTQMSHRFA----KPIDEYYKPITPPSIEK 110
Query: 131 RAKEFLVFVDNEKVNAMSVLALENLRILLSEHNIKNDLAKYAMPESYKTHLAYSINARSL 190
RAKE + E A EN LL + + + A+Y +P T++ ++NAR L
Sbjct: 111 RAKEIIEKAYQE--------AYENYFKLLQD-GVPEEDARYVLPNGVNTNIVVTMNAREL 161
Query: 191 QNFLTLRSSNKALKEMQDLAKALFDALPGEHQYLFE----DCLKH 231
NF LR ++A E++ +A + + + H LF +C+ H
Sbjct: 162 YNFFALRLCSRAQWEIRAIAWKMLEEVKKVHPRLFRYVGPNCIIH 206
>ref|NP_142699.1| (NC_000961) hypothetical protein [Pyrococcus horikoshii]
sp|O58498|Y762_PYRHO Hypothetical protein PH0762
pir||C71124 hypothetical protein PH0762 - Pyrococcus horikoshii
dbj|BAA29853.1| (AP000003) 243aa long hypothetical protein [Pyrococcus horikoshii]
Length = 243
Score = 67.0 bits (162), Expect = 2e-10
Identities = 43/151 (28%), Positives = 76/151 (49%), Gaps = 11/151 (7%)
Query: 69 FRHSSTLEHLYYNFEIKGLSRGALQELSRHRIASLSVKSSRYTLRELKEVESFLPLNETN 128
+ H S LEH + F I+G SR +L RHRIAS + +S RY ++VE + E+
Sbjct: 52 YGHESILEHATFTFSIEGCSRVCTHQLVRHRIASYTQQSQRYIKINPEDVEETFVIPES- 110
Query: 129 LERAKEFLVFVDNEKVNAMSVLALENLRILLS--EHNIKNDLAKYAMPESYKTHLAYSIN 186
+ D+E + L +L + E I + A++ +P+S KT + ++N
Sbjct: 111 --------IKKDSELLKEWKELLKRSLELYEKSIERGIHQEDARFILPQSVKTKIVVTMN 162
Query: 187 ARSLQNFLTLRSSNKALKEMQDLAKALFDAL 217
R L++F LR +A E++++A + + +
Sbjct: 163 LRELKHFFGLRLCERAQWEIREVAWKMLEEI 193
>ref|NP_341866.1| (NC_002754) Conserved hypothetical protein [Sulfolobus
solfataricus]
gb|AAK40656.1| (AE006666) Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 260
Score = 66.6 bits (161), Expect = 2e-10
Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 15/163 (9%)
Query: 73 STLEHLYYNFEIKGLSRGALQELSRHRIASLSVKSSRYTLRELKEVESFLPLNETNLERA 132
S LEH Y F I+ +SR A +L RHRIAS + S R+ + + +P + +R+
Sbjct: 56 SVLEHSVYTFSIEEISRVASHQLVRHRIASYTQMSHRFAKPIDEYYKPIIPPSAK--KRS 113
Query: 133 KEFLVFVDNEKVNAMSVLALENLRILLSEHNIKNDLAKYAMPESYKTHLAYSINARSLQN 192
KE + E A +N LL E + + A+Y +P T++ ++NAR L N
Sbjct: 114 KELVEKAYKE--------AYDNYYTLL-ESGVPEEDARYVLPNGVNTNIVVTMNARELYN 164
Query: 193 FLTLRSSNKALKEMQDLAKALFDALPGEHQYLFE----DCLKH 231
F +LR ++A E++ +A + + + H LF+ +C+ H
Sbjct: 165 FFSLRLCSRAQWEIRAIAWKMLEEVKKVHPRLFKYTGPNCIIH 207
>ref|NP_563341.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB82131.1| (AP003194) conserved hypothetical protein [Clostridium perfringens]
Length = 245
Score = 66.6 bits (161), Expect = 2e-10
Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 15/185 (8%)
Query: 51 SDDGGCKDKELIHRVGNIFRHSSTLEHLYYNFEIKGLSRGALQELSRHRIASLSVKSSRY 110
+D+G K ++ G H S +EH+ + F ++G+SR +L RHRIAS S +S RY
Sbjct: 38 TDEGAEKFLNMLMSYG----HMSPIEHVSFTFAVEGVSRSLTHQLVRHRIASYSQQSQRY 93
Query: 111 TLRELKEVESFLPLNETNLERAKEFLVFVDNEKVNAMSVLALENLRILLSEHNIKN---- 166
+L + E +P N E AK+ + A + +E L+ I
Sbjct: 94 V--KLDQFEYIVPPAIENDEVAKKLFIDQMQGAQKAYDEI-VERLKDKYISEGIGEKPAE 150
Query: 167 ----DLAKYAMPESYKTHLAYSINARSLQNFLTLRSSNKALKEMQDLAKALFDALPGEHQ 222
+ A+Y P + +T + +++NARSL NF R ++A E++ +A+ + + +
Sbjct: 151 KKAIEDARYVFPNACETKIVFTMNARSLMNFFHHRCCDRAQWEIRTMAEKMVNEVKKVAP 210
Query: 223 YLFED 227
LF++
Sbjct: 211 ILFKN 215
>ref|NP_578269.1| (NC_003413) hypothetical protein [Pyrococcus furiosus DSM 3638]
gb|AAL80664.1| (AE010177) hypothetical protein [Pyrococcus furiosus DSM 3638]
Length = 244
Score = 64.7 bits (156), Expect = 8e-10
Identities = 42/150 (28%), Positives = 84/150 (56%), Gaps = 9/150 (6%)
Query: 69 FRHSSTLEHLYYNFEIKGLSRGALQELSRHRIASLSVKSSRYTLRELKEVESFLPLNETN 128
+ H S LEH + F I+G SR +L RHRIAS + +S RY + + + VE + E +
Sbjct: 52 YGHESILEHATFTFSIEGCSRVCTHQLVRHRIASYTQQSQRYIVLDEENVEETFVIPE-S 110
Query: 129 LERAKEFLVFVDNEKVNAMSV-LALENLRILLSEHNIKNDLAKYAMPESYKTHLAYSINA 187
+++ +E ++ +KV A ++ L E++ + + A++ +P++ KT + ++N
Sbjct: 111 IKKDRE--LYEKWKKVMAETISLYKESI-----NRGVHQEDARFILPQAVKTKIIVTMNL 163
Query: 188 RSLQNFLTLRSSNKALKEMQDLAKALFDAL 217
R L++F LR +A E++++A + + +
Sbjct: 164 RELKHFFGLRLCERAQWEIREVAWKMLEEM 193
>ref|NP_657640.1| (NC_003995) Thy1, Thymidylate synthase complementing protein
[Bacillus anthracis A2012] [Bacillus anthracis str.
A2012]
Length = 252
Score = 63.5 bits (153), Expect = 2e-09
Identities = 61/199 (30%), Positives = 96/199 (47%), Gaps = 28/199 (14%)
Query: 36 IASQAIRTCWQSFEYS----------------DDGGCK--DKELIHRVGNIFRHSSTLEH 77
+A AIRTC+ + S D G K D+ + H VG+ H+STLEH
Sbjct: 38 VALSAIRTCYSPNKPSRIVSLEGEKYFKGKATDGKGGKEVDRLIRHIVGS--GHASTLEH 95
Query: 78 LYYNFEIKGLSRGALQELSRHRIA-SLSVKSSRYT-LRELKEVESFLPLNETNLERAKEF 135
L Y F ++G+SR L +L+RHR+ S SV+S RY + ++ F + ++ E
Sbjct: 96 LTYTFAVEGVSRALLAQLTRHRVGFSYSVQSQRYVRMGSNDKIGGFDYVVPETVKAKGEQ 155
Query: 136 LVFVDNEKVNAMSVLALENLRILLSEHNIKNDLAKYAMPESYKTHLAYSINARSLQNFLT 195
+V NE + L++ LL I + A+ +P + T+L ++N R L +F
Sbjct: 156 VVNAYNE-----MMYKLQSGYDLLRTLGIPAEDARSVLPNAAATNLVLTVNLRGLLDFYN 210
Query: 196 LRSSNK-ALKEMQDLAKAL 213
R K A E+ +LA+ L
Sbjct: 211 KRRKGKGAQAEIAELAEQL 229
>ref|NP_126978.1| (NC_000868) hypothetical protein [Pyrococcus abyssi]
sp|Q9UZ51|Y861_PYRAB Hypothetical protein PAB0861
pir||C75039 hypothetical protein PAB0861 - Pyrococcus abyssi (strain Orsay)
emb|CAB50208.1| (AJ248287) hypothetical protein [Pyrococcus abyssi]
Length = 244
Score = 62.0 bits (149), Expect = 5e-09
Identities = 41/150 (27%), Positives = 83/150 (55%), Gaps = 9/150 (6%)
Query: 69 FRHSSTLEHLYYNFEIKGLSRGALQELSRHRIASLSVKSSRYTLRELKEVESFLPLNETN 128
+ H S LEH + F I+G SR +L RHRIAS + +S RY + + VE + E +
Sbjct: 52 YGHESILEHATFTFSIEGCSRVCTHQLVRHRIASYTQQSQRYIVLNEENVEETFVIPE-S 110
Query: 129 LERAKEFLVFVDNEKVNAMSV-LALENLRILLSEHNIKNDLAKYAMPESYKTHLAYSINA 187
+++ +E ++ +K A ++ L E+L+ I + A++ +P++ ++ + ++N
Sbjct: 111 IKKDRE--LYEKWKKAMAETIKLYKESLK-----RGIHQEDARFILPQAVRSKIVVTMNL 163
Query: 188 RSLQNFLTLRSSNKALKEMQDLAKALFDAL 217
R L++F LR +A E++++A + + +
Sbjct: 164 RELKHFFGLRLCERAQWEIREVAWKMLEEI 193
>ref|NP_228259.1| (NC_000853) thy1 protein [Thermotoga maritima]
sp|Q9WYT0|Y449_THEMA Hypothetical protein TM0449
pir||B72375 thy1 protein - Thermotoga maritima (strain MSB8)
gb|AAD35532.1|AE001723_2 (AE001723) thy1 protein [Thermotoga maritima]
Length = 220
Score = 61.2 bits (147), Expect = 9e-09
Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 18/198 (9%)
Query: 40 AIRTCWQSFEYSDDGGCKDKELI-HRVGNIFRHS--STLEHLYYNFEIKGLSRGALQELS 96
A+R SF D G KD+E H + + +H + EH+ + F +K A Q
Sbjct: 23 AVRAARVSF----DMGLKDEERDRHLIEYLMKHGHETPFEHIVFTFHVKAPIFVARQWF- 77
Query: 97 RHRIASLSVKSSRYTLRELKEVESFLPLNETNLERAKEFLVFVDNEKVNA-MSVLALENL 155
RHRIAS + S RY+ E ++P + ER + + + E+V +S + +
Sbjct: 78 RHRIASYNELSGRYSKLSY---EFYIP----SPERLEGYKTTIPPERVTEKISEIVDKAY 130
Query: 156 RILLS--EHNIKNDLAKYAMPESYKTHLAYSINARSLQNFLTLRSSNKALKEMQDLAKAL 213
R L E + ++A+ +P + T +++NARSL NFL LR+ + A E+Q A A+
Sbjct: 131 RTYLELIESGVPREVARIVLPLNLYTRFFWTVNARSLMNFLNLRADSHAQWEIQQYALAI 190
Query: 214 FDALPGEHQYLFEDCLKH 231
+ + FE LK+
Sbjct: 191 ARIFKEKCPWTFEAFLKY 208
>pdb|1KQ4|C Chain C, Crystal Structure Of Thy1-Complementing Protein (Tm0449)
From Thermotoga Maritima At 2.25 A Resolution
pdb|1KQ4|B Chain B, Crystal Structure Of Thy1-Complementing Protein (Tm0449)
From Thermotoga Maritima At 2.25 A Resolution
pdb|1KQ4|D Chain D, Crystal Structure Of Thy1-Complementing Protein (Tm0449)
From Thermotoga Maritima At 2.25 A Resolution
pdb|1KQ4|A Chain A, Crystal Structure Of Thy1-Complementing Protein (Tm0449)
From Thermotoga Maritima At 2.25 A Resolution
Length = 232
Score = 61.2 bits (147), Expect = 9e-09
Identities = 55/195 (28%), Positives = 92/195 (46%), Gaps = 12/195 (6%)
Query: 40 AIRTCWQSFEYSDDGGCKDKELIHRVGNIFRHSSTLEHLYYNFEIKGLSRGALQELSRHR 99
A+R SF+ +D+ LI + H + EH+ + F +K A Q RHR
Sbjct: 35 AVRAARVSFDXGLKDEERDRHLIEYLXK-HGHETPFEHIVFTFHVKAPIFVARQWF-RHR 92
Query: 100 IASLSVKSSRYTLRELKEVESFLPLNETNLERAKEFLVFVDNEKVNA-MSVLALENLRIL 158
IAS + S RY+ E ++P + ER + + + E+V +S + + R
Sbjct: 93 IASYNELSGRYSKLSY---EFYIP----SPERLEGYKTTIPPERVTEKISEIVDKAYRTY 145
Query: 159 LS--EHNIKNDLAKYAMPESYKTHLAYSINARSLQNFLTLRSSNKALKEMQDLAKALFDA 216
L E + ++A+ +P + T +++NARSL NFL LR+ + A E+Q A A+
Sbjct: 146 LELIESGVPREVARIVLPLNLYTRFFWTVNARSLXNFLNLRADSHAQWEIQQYALAIARI 205
Query: 217 LPGEHQYLFEDCLKH 231
+ + FE LK+
Sbjct: 206 FKEKCPWTFEAFLKY 220
>ref|NP_542556.1| (NC_003345) putative phage C31 protein gp16-like protein [Halovirus
HF2]
gb|AAL54978.1| (AF222060) putative phage C31 protein gp16-like protein [Halovirus
HF2]
Length = 234
Score = 59.3 bits (142), Expect = 3e-08
Identities = 41/162 (25%), Positives = 78/162 (47%), Gaps = 14/162 (8%)
Query: 65 VGNIFR--HSSTLEHLYYNFEIKGLSRGALQELSRHRIASLSVKSSRYTLRELKEVESFL 122
+G + R H EH+ F ++GLSR A+ +++RHR S V+S RY + + +
Sbjct: 51 MGELLRRGHFGPFEHIQAFFAVEGLSRSAMAQVTRHRHMSFDVQSQRYC--DFSDKNIVI 108
Query: 123 PLNETNLERAKEFLV---------FVDNEKVNAMSVLALENLRILLSEHNIKNDLAKYAM 173
P + A++ ++ F + + V ++E L+ + K D A++ +
Sbjct: 109 PPGDKKNPAAEDVVLGQYDGPAEDFTGADALEGHFVNSVELYEKLIEQGMAKED-ARFVL 167
Query: 174 PESYKTHLAYSINARSLQNFLTLRSSNKALKEMQDLAKALFD 215
P + + +S NAR+L +F LR + KA E ++ A + +
Sbjct: 168 PIGVEVDMTFSANARTLMHFFDLRKNMKAQWEAREFATKVLE 209
>dbj|BAB88822.1| (AB083130) hypothetical protein [Corynebacterium efficiens]
Length = 250
Score = 59.3 bits (142), Expect = 3e-08
Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 7/191 (3%)
Query: 42 RTCWQSFEYSDDGGCKDKELIHRVGNIFRHSSTLEHLYYNFEIKGLSRGALQELSRHRIA 101
R C+++F+ + + + + + H++ LEH I+G+SR A EL RHR
Sbjct: 41 RACYETFDKPNPRTATNAAYLRHIMEV-GHTALLEHASATMYIRGISRSATHELVRHRHF 99
Query: 102 SLSVKSSRYTLRELKEVESFLPLNE-----TNLERAKEFLVFVDNEKVNAMSVLALENLR 156
S S S R+ +EV +NE + RA + FV NE +NA+ LE
Sbjct: 100 SFSQLSQRFVHEGEQEVIIPELINEDPQLRSLFLRAMDDNRFVYNELLNALEE-KLEGEP 158
Query: 157 ILLSEHNIKNDLAKYAMPESYKTHLAYSINARSLQNFLTLRSSNKALKEMQDLAKALFDA 216
L A+ +P + ++ + + N RS ++FL +R+S A E++ +A A +
Sbjct: 159 NALLRKKQARQAARAVLPNATESRIVVTGNFRSWRHFLGMRASEHADVEIRAVAVACLEK 218
Query: 217 LPGEHQYLFED 227
L + +F D
Sbjct: 219 LKQQAPTVFGD 229
>sp|P40111|YDAP_CORGL Hypothetical 28.0 kDa protein in dapB-dapA intergenic region (ORF2)
emb|CAA79713.1| (Z21502) unknown [Corynebacterium glutamicum]
Length = 250
Score = 53.5 bits (127), Expect = 2e-06
Identities = 44/174 (25%), Positives = 82/174 (46%), Gaps = 7/174 (4%)
Query: 42 RTCWQSFEYSDDGGCKDKELIHRVGNIFRHSSTLEHLYYNFEIKGLSRGALQELSRHRIA 101
R C+++F+ + + + + + H++ LEH I+G+SR A EL RHR
Sbjct: 41 RACYETFDKPNPRTASNAAYLRHIMEV-GHTALLEHANATMYIRGISRSATHELVRHRHF 99
Query: 102 SLSVKSSRYTLRELKEVESFLPLNETNLER-----AKEFLVFVDNEKVNAMSVLALENLR 156
S S S R+ EV ++E R A + F NE +NA+ +
Sbjct: 100 SFSQLSQRFVHSGESEVVVPTLIDEDPQLRELFMHAMDESRFAFNELLNALEEKLGDEPN 159
Query: 157 ILLSEHNIKNDLAKYAMPESYKTHLAYSINARSLQNFLTLRSSNKALKEMQDLA 210
LL + + A+ +P + ++ + S N R+ ++F+ +R+S A E++++A
Sbjct: 160 ALLRKKQAR-QAARAVLPNATESRIVVSGNFRTWRHFIGMRASEHADVEIREVA 212
>ref|NP_601178.1| (NC_003450) COG1351:Predicted alternative thymidylate synthase
[Corynebacterium glutamicum]
dbj|BAB99365.1| (AP005280) Predicted alternative thymidylate synthase or
2,3-dihydrodipicolinate N-C6-lyase [Corynebacterium
glutamicum ATCC 13032]
Length = 250
Score = 53.5 bits (127), Expect = 2e-06
Identities = 44/174 (25%), Positives = 82/174 (46%), Gaps = 7/174 (4%)
Query: 42 RTCWQSFEYSDDGGCKDKELIHRVGNIFRHSSTLEHLYYNFEIKGLSRGALQELSRHRIA 101
R C+++F+ + + + + + H++ LEH I+G+SR A EL RHR
Sbjct: 41 RACYETFDKPNPRTASNAAYLRHIMEV-GHTALLEHANATMYIRGISRSATHELVRHRHF 99
Query: 102 SLSVKSSRYTLRELKEVESFLPLNETNLER-----AKEFLVFVDNEKVNAMSVLALENLR 156
S S S R+ EV ++E R A + F NE +NA+ +
Sbjct: 100 SFSQLSQRFVHSGESEVVVPTLIDEDPQLRELFMHAMDESRFAFNELLNALEEKLGDEPN 159
Query: 157 ILLSEHNIKNDLAKYAMPESYKTHLAYSINARSLQNFLTLRSSNKALKEMQDLA 210
LL + + A+ +P + ++ + S N R+ ++F+ +R+S A E++++A
Sbjct: 160 ALLRKKQAR-QAARAVLPNATESRIVVSGNFRTWRHFIGMRASEHADVEIREVA 212
>ref|NP_302061.1| (NC_002677) putative mycobacteriophage protein [Mycobacterium
leprae]
sp|Q9CBW3|YF14_MYCLE Hypothetical protein ML1514
emb|CAC30465.1| (AL583922) putative mycobacteriophage protein [Mycobacterium
leprae]
Length = 254
Score = 53.1 bits (126), Expect = 2e-06
Identities = 46/191 (24%), Positives = 85/191 (44%), Gaps = 17/191 (8%)
Query: 42 RTCWQSFEYSDDGGCKDKELIHRVGNIFRHSSTLEHLYYNFEIKGLSRGALQELSRHRIA 101
R C+QS+ + + I + ++ H + LEH +F I G+SR EL RHR
Sbjct: 41 RACYQSWSKPNPRTATNAAYIKHIIDV-GHVAVLEHASVSFYISGISRSCTHELIRHRHF 99
Query: 102 SLSVKSSRYTLRELKEVESFLPLNETNLERAKEFLV-FVDNEKVNAMSVLALENLRILLS 160
S S S RY K+ + +P + + + ++ L+ V+ + +L N +++
Sbjct: 100 SYSQLSQRYVPE--KDAQVVVPPDMEDDDELQQILIAAVEASRATYTELLVKLNAKLMAG 157
Query: 161 E---------HNIKNDLAKYAMPESYKTHLAYSINARSLQNFLTLRSSNKALKEMQDLA- 210
E A +P + +T + + N R+ ++F+ +R+S A E++ LA
Sbjct: 158 ELGGNRAVLRRKQARQAAHAVLPNANETRIVVTGNYRAWRHFIAMRASEHADVEIRRLAI 217
Query: 211 ---KALFDALP 218
+ L D P
Sbjct: 218 VCLRRLVDVAP 228
>ref|NP_148355.1| (NC_000854) hypothetical protein [Aeropyrum pernix]
sp|Q9YA75|YK64_AERPE Hypothetical protein APE2064
pir||B72511 hypothetical protein APE2064 - Aeropyrum pernix (strain K1)
dbj|BAA81074.1| (AP000063) 327aa long hypothetical protein [Aeropyrum pernix]
Length = 327
Score = 52.4 bits (124), Expect = 4e-06
Identities = 59/200 (29%), Positives = 84/200 (41%), Gaps = 44/200 (22%)
Query: 70 RHSSTLEHLYYNFEIKGLSRGALQELSRHRIASLSVKSSRYT---LRE--LKEVESF--- 121
+H S EH Y F ++GLSR A +L RHR+AS + S RY+ LRE LK ES
Sbjct: 64 QHFSPWEHSVYTFMVEGLSRVASHQLVRHRVASYTQLSHRYSEGYLREAALKACESIGLD 123
Query: 122 ---------------LPLNETNLER------AKEFLVFVDNEKVNAMSVLA--------- 151
L LER A E V ++LA
Sbjct: 124 CPSKPAETEGGRKAAYRLYSQALERAARDFGASERFAIAAKAFVIPPTILARGDGGDGVV 183
Query: 152 ---LENLRILLS--EHNIKNDLAKYAMPESYKTHLAYSINARSL-QNFLTLRSSNKALKE 205
L + I S + + A+Y +P++ +T + ++NAR L Q F LR +A E
Sbjct: 184 EAYLRSAAIYYSLLSRGARREDARYILPDALRTRIVVTMNARELIQVFFPLRMCTRAQWE 243
Query: 206 MQDLAKALFDALPGEHQYLF 225
++ +A L+ L H LF
Sbjct: 244 IRHIAWLLWRELSRVHPRLF 263
>ref|NP_280185.1| (NC_002607) Vng1325c [Halobacterium sp. NRC-1]
gb|AAG19665.1| (AE005054) Vng1325c [Halobacterium sp. NRC-1]
Length = 266
Score = 51.6 bits (122), Expect = 7e-06
Identities = 47/212 (22%), Positives = 93/212 (43%), Gaps = 28/212 (13%)
Query: 32 TPLDIASQAIRTCWQSFEYSDDGGCKDKELIHRVGNIFR--HSSTLEHLYYNFEIKGLSR 89
TPLD A ++ DG D++L + + + H EH F I+G+SR
Sbjct: 51 TPLDTAMASV-----------DGDTTDEKLSNLIAQLLTRGHYGPFEHPSATFAIEGVSR 99
Query: 90 GALQELSRHRIASLSVKSSRY---------TLRELKEVESFLPLNETNLERAKEFLVFVD 140
+ +L+RHR AS V+S RY + E + V + + + + +D
Sbjct: 100 SCMAQLTRHRHASFDVQSMRYVAFDDVDPAAVAEGELVVTPPSATDPDWVGRNQDAGDID 159
Query: 141 NEKVNAMSVLALENLRILLSEH------NIKNDLAKYAMPESYKTHLAYSINARSLQNFL 194
E + + ++R + ++ + + A++ +P + ++ ++N RSL +
Sbjct: 160 EETMAEREAVFQASVRRAVEDYQELLGLGMPPEDARFVLPIGTEVNVVITLNPRSLMHVA 219
Query: 195 TLRSSNKALKEMQDLAKALFDALPGEHQYLFE 226
+R++ A E+++L + L DA + FE
Sbjct: 220 DMRAAADAQWEIRELTEQLLDAAAQWCPHTFE 251
>sp|Q9HQ52|YD25_HALN1 Hypothetical protein Vng1325c
Length = 247
Score = 51.6 bits (122), Expect = 7e-06
Identities = 47/212 (22%), Positives = 93/212 (43%), Gaps = 28/212 (13%)
Query: 32 TPLDIASQAIRTCWQSFEYSDDGGCKDKELIHRVGNIFR--HSSTLEHLYYNFEIKGLSR 89
TPLD A ++ DG D++L + + + H EH F I+G+SR
Sbjct: 32 TPLDTAMASV-----------DGDTTDEKLSNLIAQLLTRGHYGPFEHPSATFAIEGVSR 80
Query: 90 GALQELSRHRIASLSVKSSRY---------TLRELKEVESFLPLNETNLERAKEFLVFVD 140
+ +L+RHR AS V+S RY + E + V + + + + +D
Sbjct: 81 SCMAQLTRHRHASFDVQSMRYVAFDDVDPAAVAEGELVVTPPSATDPDWVGRNQDAGDID 140
Query: 141 NEKVNAMSVLALENLRILLSEH------NIKNDLAKYAMPESYKTHLAYSINARSLQNFL 194
E + + ++R + ++ + + A++ +P + ++ ++N RSL +
Sbjct: 141 EETMAEREAVFQASVRRAVEDYQELLGLGMPPEDARFVLPIGTEVNVVITLNPRSLMHVA 200
Query: 195 TLRSSNKALKEMQDLAKALFDALPGEHQYLFE 226
+R++ A E+++L + L DA + FE
Sbjct: 201 DMRAAADAQWEIRELTEQLLDAAAQWCPHTFE 232
>sp|Q9C4Y9|THY1_HALSA Thymidylate synthase complementing protein
gb|AAK00648.1|AF227235_2 (AF227235) thymidylate synthase complementing protein
[Halobacterium salinarum]
Length = 247
Score = 51.2 bits (121), Expect = 9e-06
Identities = 48/212 (22%), Positives = 92/212 (42%), Gaps = 28/212 (13%)
Query: 32 TPLDIASQAIRTCWQSFEYSDDGGCKDKELIHRVGNIFR--HSSTLEHLYYNFEIKGLSR 89
TPLD A ++ DG D++L + + + H EH F I+G+SR
Sbjct: 32 TPLDTAMASV-----------DGDTTDEKLSNLIAQLLTRGHYGPFEHPSATFAIEGVSR 80
Query: 90 GALQELSRHRIASLSVKSSRY---------TLRELKEVESFLPLNETNLERAKEFLVFVD 140
+ +L+RHR AS V+S RY + E + V + + + + +D
Sbjct: 81 SCMAQLTRHRHASFDVQSMRYVAFDDVDPAAVAEGELVVTPPSATDPDWVGRNQDAGDID 140
Query: 141 NEKVNAMSVLALENLRILLSEHNIKNDL------AKYAMPESYKTHLAYSINARSLQNFL 194
E + + ++R + ++ L A++ +P + ++ ++N RSL +
Sbjct: 141 EETMAERQAVFQASVRRAVEDYQELLGLGMPPVDARFVLPIGTEVNVVITLNPRSLMHVA 200
Query: 195 TLRSSNKALKEMQDLAKALFDALPGEHQYLFE 226
+R++ A E+++L + L DA + FE
Sbjct: 201 DMRAAADAQWEIRELTEQLLDAAAQWCPHTFE 232
>pir||B40626 probable 2,3-dihydrodipicolinate N-C6-lyase (cyclizing) (EC
4.3.3.-) - Corynebacterium glutamicum
Length = 250
Score = 50.8 bits (120), Expect = 1e-05
Identities = 43/174 (24%), Positives = 81/174 (45%), Gaps = 7/174 (4%)
Query: 42 RTCWQSFEYSDDGGCKDKELIHRVGNIFRHSSTLEHLYYNFEIKGLSRGALQELSRHRIA 101
R C+++F+ + + + + H++ LEH I+G+SR A EL RHR
Sbjct: 41 RACYETFDKPNPRTASHAAYLRHIMEV-GHTALLEHANATMYIRGISRSATHELVRHRHF 99
Query: 102 SLSVKSSRYTLRELKEVESFLPLNETNLER-----AKEFLVFVDNEKVNAMSVLALENLR 156
S S S R+ EV ++E R A + F NE +NA+ +
Sbjct: 100 SFSQLSQRFVHSGESEVVVPTLIDEDPQLRELFMHAMDESRFAFNELLNALEEKLGDEPH 159
Query: 157 ILLSEHNIKNDLAKYAMPESYKTHLAYSINARSLQNFLTLRSSNKALKEMQDLA 210
LL + + A+ +P + ++ + S + R+ ++F+ +R+S A E++++A
Sbjct: 160 ALLRKKQAR-QAARAVLPHATESRIVVSGHFRTWRHFIGMRASEHADVEIREVA 212
>ref|NP_046863.1| (NC_001900) gp48 [Mycobacteriophage D29]
sp|O64238|VG48_BPMD2 Gene 48 protein (GP48)
pir||E72805 gp48 protein - Mycobacterium phage D29
gb|AAC18488.1| (AF022214) gp48 [Mycobacteriophage D29]
Length = 235
Score = 48.5 bits (114), Expect = 6e-05
Identities = 50/190 (26%), Positives = 88/190 (46%), Gaps = 14/190 (7%)
Query: 35 DIASQAIRTCWQSFEYSDDGGCKDKELIHRVGNIFRHSSTLEHLYYNFEIKGLSRGALQE 94
++A A R C+ SF+ + ++ + ++ + ++ H S LEH F I+ SR L E
Sbjct: 33 ELAEFAGRNCYLSFDRPNPKTRENVDYLNHILDV-GHESVLEHSSATFYIEA-SRSVLTE 90
Query: 95 LSRHRIASLSVKSSRY---TLRELKEVESFLPLNETNLERAKEFLVFVDNEKVNAMSVLA 151
L RHR S SV S RY T + +F L+ ++ ++AKE L+ V + + A
Sbjct: 91 LERHRHLSFSVVSQRYVDPTELGIHVPPAFTELSGSDADKAKEVLL-----DVQSFAQEA 145
Query: 152 LENLRILLSEHNI----KNDLAKYAMPESYKTHLAYSINARSLQNFLTLRSSNKALKEMQ 207
E L + S+ + A+ +P + + + N R+ + + R A E++
Sbjct: 146 YEYLVHIFSDAGFPRKKAREAARAVLPNMTNSPMVVTGNHRAWRYVIKNRWHEAADAEIR 205
Query: 208 DLAKALFDAL 217
+LA L L
Sbjct: 206 ELAGELLRQL 215
>ref|NP_047961.1| (NC_001978) gp16 [Bacteriophage phi-C31]
sp|Q9ZX92|VG16_BPPHC Gene 16 protein (GP16)
emb|CAA07140.1| (AJ006589) gp16 [Bacteriophage phi-C31]
Length = 237
Score = 47.8 bits (112), Expect = 1e-04
Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 9/184 (4%)
Query: 36 IASQAIRTCWQSFEYSDDGGCKDKELIHRVGNIFR--HSSTLEHLYYNFEIKGLSRGALQ 93
+ A R C++SFE + + + GNI H S LEH F ++ +SR L
Sbjct: 40 LGEAAGRICYKSFERKNPATASNPGYL---GNILAQGHFSVLEHASVTFLVRDVSRALLT 96
Query: 94 ELSRHRIASLSVKSSRYTLRELKEVESFLPLNETNLERAKEFLVFVDNEKVNAMSVLALE 153
ELSRHR S SV S RY + + E +P E K F D + ++
Sbjct: 97 ELSRHRHLSFSVVSQRYV--DHADTEPVVPPAIRGTELEKPFR--EDYAEALQAYDAGVK 152
Query: 154 NLRILLSEHNIKNDLAKYAMPESYKTHLAYSINARSLQNFLTLRSSNKALKEMQDLAKAL 213
LR + A+ +P + + + N R+ ++ L R A E+++ A +
Sbjct: 153 LLRARGYGRKQAREAARALLPNAAPVDMVVTGNLRAWRDVLGKRWHVAADAEIREFAGRV 212
Query: 214 FDAL 217
D L
Sbjct: 213 LDHL 216
>ref|NP_213443.1| (NC_000918) thymidylate synthase complementing protein [Aquifex
aeolicus]
sp|O66883|Y640_AQUAE Hypothetical protein AQ_640
pir||G70356 thymidylate synthase complementing protein - Aquifex aeolicus
gb|AAC06847.1| (AE000700) thymidylate synthase complementing protein [Aquifex
aeolicus]
Length = 317
Score = 43.9 bits (102), Expect = 0.001
Identities = 39/127 (30%), Positives = 65/127 (50%), Gaps = 15/127 (11%)
Query: 97 RHRIASLSVKSSRYTLRELKEVESFLPLN-ETNLERAKEFLVFVDNEKVNAMSVLA--LE 153
RHR S + S RY +E +E +LP E+ K+ V +E ++ V +E
Sbjct: 181 RHRFGSYNEVSKRYVGKEF--LEFYLPKYIRKQAEKNKQASV---DEPISESEVFIKKIE 235
Query: 154 NL---RILLSEHNIKN----DLAKYAMPESYKTHLAYSINARSLQNFLTLRSSNKALKEM 206
NL + L E I+ +LA+ +P+ KT +++ SL NF+TLR+ A KE+
Sbjct: 236 NLISKSVKLYEEIIEKGGAKELARGVLPQFMKTRFYWTVPRISLDNFITLRTHEGAQKEI 295
Query: 207 QDLAKAL 213
++ A+A+
Sbjct: 296 REFAEAI 302
>ref|NP_039712.1| (NC_001335) Hypothetical protein [Mycobacterium phage L5]
sp|Q05259|VG48_BPML5 Gene 48 protein (GP48)
pir||S30993 gene 48 protein - Mycobacterium phage L5
emb|CAA79424.1| (Z18946) predicted 27.8Kd protein [Mycobacterium phage L5]
Length = 243
Score = 43.1 bits (100), Expect = 0.002
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 35 DIASQAIRTCWQSFEYSDDGGCKDKELIHRVGNIFRHSSTLEHLYYNFEIKGLSRGALQE 94
++A A R C++SF + ++++ ++ + ++ H S EH F I+ SR L E
Sbjct: 43 ELAEFAGRNCYRSFHRPNPATAENEDYLNHIIDL-GHESVFEHASATFYIEA-SRSVLTE 100
Query: 95 LSRHRIASLSVKSSRY 110
L RHR S SV S RY
Sbjct: 101 LERHRHLSFSVVSQRY 116
>sp|P15808|THY1_DICDI Thy1 protein
pir||YXDOTC thymidylate synthase-complementing protein - slime mold
(Dictyostelium discoideum)
gb|AAA33257.1| (M27713) Thy1 protein [Dictyostelium discoideum]
Length = 260
Score = 42.0 bits (97), Expect = 0.005
Identities = 42/171 (24%), Positives = 77/171 (44%), Gaps = 22/171 (12%)
Query: 57 KDKELIHRVGNIFRHSSTLEHLYYNFEIKGLSRGALQELSRHRIASLSVKSSRYTLR--- 113
+DK LI + +H+S E + + F + ++ RHR A+++ S+RY++
Sbjct: 80 EDKGLIRYLYR-HQHTSPFEMVEFKFHCV-MPVFIARQWIRHRTANVNEYSARYSVLPDK 137
Query: 114 ----ELKEVESFLPLNETNLERA------KEFLVFVDNEKVNAMSVLALENLRILLSEHN 163
++EV N E A +EFL ++D + N + L E
Sbjct: 138 FYHPSIEEVRKQSTSNRQGGEEALEPKTAQEFLDYLDKVEENYKTYNEL-------LEKG 190
Query: 164 IKNDLAKYAMPESYKTHLAYSINARSLQNFLTLRSSNKALKEMQDLAKALF 214
+ +L + +P S T + I+ +L +FL LR + + KE++D A +F
Sbjct: 191 LSRELGRIGLPVSIYTEWYWKIDLHNLFHFLRLRMDSHSQKEIRDYANTIF 241
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.133 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,701,314
Number of Sequences: 1026957
Number of extensions: 4984791
Number of successful extensions: 13655
Number of sequences better than 1.0e-02: 28
Number of HSP's better than 0.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 13633
Number of HSP's gapped (non-prelim): 29
length of query: 231
length of database: 324,149,939
effective HSP length: 117
effective length of query: 114
effective length of database: 203,995,970
effective search space: 23255540580
effective search space used: 23255540580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 95 (41.2 bits)