BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644784|ref|NP_206954.1| hypothetical protein
[Helicobacter pylori 26695]
(91 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206954.1| (NC_000915) hypothetical protein [Helicoba... 182 7e-46
ref|NP_222864.1| (NC_000921) putative [Helicobacter pylori ... 176 5e-44
ref|NP_282798.1| (NC_002163) hypothetical protein Cj1671c [... 45 1e-04
>ref|NP_206954.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64539 hypothetical protein HP0155 - Helicobacter pylori (strain 26695)
gb|AAD07226.1| (AE000536) H. pylori predicted coding region HP0155 [Helicobacter
pylori 26695]
Length = 91
Score = 182 bits (462), Expect = 7e-46
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 1 MASGLFENDGIKDNKARDFFYSHSSLIVFFLLLLGFGYYLGKLLFGGSSLEVYLDLRDKH 60
MASGLFENDGIKDNKARDFFYSHSSLIVFFLLLLGFGYYLGKLLFGGSSLEVYLDLRDKH
Sbjct: 1 MASGLFENDGIKDNKARDFFYSHSSLIVFFLLLLGFGYYLGKLLFGGSSLEVYLDLRDKH 60
Query: 61 ERLQQEITELQSKNVRLQKRLFELKELRPRD 91
ERLQQEITELQSKNVRLQKRLFELKELRPRD
Sbjct: 61 ERLQQEITELQSKNVRLQKRLFELKELRPRD 91
>ref|NP_222864.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71968 hypothetical protein jhp0143 - Helicobacter pylori (strain J99)
gb|AAD05724.1| (AE001453) putative [Helicobacter pylori J99]
Length = 91
Score = 176 bits (446), Expect = 5e-44
Identities = 88/91 (96%), Positives = 90/91 (98%)
Query: 1 MASGLFENDGIKDNKARDFFYSHSSLIVFFLLLLGFGYYLGKLLFGGSSLEVYLDLRDKH 60
MASGLFEND IK+NKARDFFYSHSSLIVFFLLLLGFGYYLGKLLFGGSSLEVYLDLRDKH
Sbjct: 1 MASGLFENDEIKNNKARDFFYSHSSLIVFFLLLLGFGYYLGKLLFGGSSLEVYLDLRDKH 60
Query: 61 ERLQQEITELQSKNVRLQKRLFELKELRPRD 91
ERLQQEITELQSKNVRLQKRLFEL+ELRPRD
Sbjct: 61 ERLQQEITELQSKNVRLQKRLFELRELRPRD 91
>ref|NP_282798.1| (NC_002163) hypothetical protein Cj1671c [Campylobacter jejuni]
pir||D81264 hypothetical protein Cj1671c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73658.1| (AL139079) hypothetical protein Cj1671c [Campylobacter jejuni]
Length = 67
Score = 45.4 bits (106), Expect = 1e-04
Identities = 24/62 (38%), Positives = 36/62 (57%), Gaps = 1/62 (1%)
Query: 30 FLLLLGFGYYLGKLLFGGSSLEVYLDLRDKHERLQQEITELQSKNVRLQKRLFELKELRP 89
FL+++G Y G + FG SL+ L L + E L ++I L+ +N + QK FELK L P
Sbjct: 6 FLVVIG-AIYFGNMFFGQYSLDTLLSLENTKEELNKKIILLKEQNAKAQKDYFELKGLYP 64
Query: 90 RD 91
+
Sbjct: 65 NE 66
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.325 0.146 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,550,423
Number of Sequences: 1026957
Number of extensions: 1938196
Number of successful extensions: 10303
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10300
Number of HSP's gapped (non-prelim): 3
length of query: 91
length of database: 324,149,939
effective HSP length: 67
effective length of query: 24
effective length of database: 255,343,820
effective search space: 6128251680
effective search space used: 6128251680
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 90 (39.3 bits)