BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646149|ref|NP_208333.1| hypothetical protein
[Helicobacter pylori 26695]
(136 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208333.1| (NC_000915) hypothetical protein [Helicoba... 267 2e-71
ref|NP_224175.1| (NC_000921) putative [Helicobacter pylori ... 258 6e-69
ref|NP_282234.1| (NC_002163) hypothetical protein Cj1086c [... 92 1e-18
ref|NP_233424.1| (NC_002506) Ccm2-related protein [Vibrio c... 79 1e-14
ref|NP_622493.1| (NC_003869) conserved hypothetical protein... 57 3e-08
ref|NP_212379.1| (NC_001318) B. burgdorferi predicted codin... 56 6e-08
ref|NP_407533.1| (NC_003143) putative membrane protein [Yer... 56 8e-08
ref|NP_218488.1| (NC_000919) conserved hypothetical protein... 53 5e-07
emb|CAA03912.1| (AJ000084) Ccm2 protein [Proteus mirabilis] 52 1e-06
emb|CAA03911.1| (AJ000084) Ccm1 protein [Proteus mirabilis] 52 1e-06
ref|NP_421816.1| (NC_002696) conserved hypothetical protein... 50 3e-06
ref|NP_219781.1| (NC_000117) hypothetical protein [Chlamydi... 50 4e-06
ref|NP_224625.1| (NC_000922) CT276 hypothetical protein [Ch... 50 4e-06
ref|NP_218708.1| (NC_000919) conserved hypothetical protein... 50 4e-06
ref|NP_296925.1| (NC_002620) conserved hypothetical protein... 49 1e-05
ref|NP_518614.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN... 49 1e-05
ref|NP_212672.1| (NC_001318) conserved hypothetical protein... 46 6e-05
ref|NP_420680.1| (NC_002696) conserved hypothetical protein... 46 8e-05
ref|NP_640851.1| (NC_003919) conserved hypothetical protein... 45 1e-04
ref|NP_635879.1| (NC_003902) conserved hypothetical protein... 41 0.002
>ref|NP_208333.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64712 penicillin-binding protein 4 - Helicobacter pylori (strain 26695)
gb|AAD08589.1| (AE000652) H. pylori predicted coding region HP1542 [Helicobacter
pylori 26695]
Length = 136
Score = 267 bits (682), Expect = 2e-71
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MAIFDNNNKSANAKTGPATIIAQGTKIKGELHLDYHLHVDGELEGVVHSKSTVVIGQTGS 60
MAIFDNNNKSANAKTGPATIIAQGTKIKGELHLDYHLHVDGELEGVVHSKSTVVIGQTGS
Sbjct: 1 MAIFDNNNKSANAKTGPATIIAQGTKIKGELHLDYHLHVDGELEGVVHSKSTVVIGQTGS 60
Query: 61 VVGEIFTNKLVVSGKFTGTVEAEVVEIMPLGHLDGKISSQELVVERKGILIGETRPKNIQ 120
VVGEIFTNKLVVSGKFTGTVEAEVVEIMPLGHLDGKISSQELVVERKGILIGETRPKNIQ
Sbjct: 61 VVGEIFTNKLVVSGKFTGTVEAEVVEIMPLGHLDGKISSQELVVERKGILIGETRPKNIQ 120
Query: 121 GGALLINEQEKKIENK 136
GGALLINEQEKKIENK
Sbjct: 121 GGALLINEQEKKIENK 136
>ref|NP_224175.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71806 hypothetical protein jhp1457 - Helicobacter pylori (strain J99)
gb|AAD07031.1| (AE001567) putative [Helicobacter pylori J99]
Length = 136
Score = 258 bits (660), Expect = 6e-69
Identities = 131/136 (96%), Positives = 134/136 (98%)
Query: 1 MAIFDNNNKSANAKTGPATIIAQGTKIKGELHLDYHLHVDGELEGVVHSKSTVVIGQTGS 60
MAIFDNNNKSANAKTGPATIIAQGTKIKGELHLDYHLHVDGELEGVVHSK+TVVIGQTGS
Sbjct: 1 MAIFDNNNKSANAKTGPATIIAQGTKIKGELHLDYHLHVDGELEGVVHSKNTVVIGQTGS 60
Query: 61 VVGEIFTNKLVVSGKFTGTVEAEVVEIMPLGHLDGKISSQELVVERKGILIGETRPKNIQ 120
VVGEIF NKLVV+GKFTGTVEAEVVEIMPLG LDGKIS+QELVVERKGILIGETRPKNIQ
Sbjct: 61 VVGEIFANKLVVNGKFTGTVEAEVVEIMPLGRLDGKISTQELVVERKGILIGETRPKNIQ 120
Query: 121 GGALLINEQEKKIENK 136
GGALLINEQEKKIENK
Sbjct: 121 GGALLINEQEKKIENK 136
>ref|NP_282234.1| (NC_002163) hypothetical protein Cj1086c [Campylobacter jejuni]
pir||A81312 hypothetical protein Cj1086c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73341.1| (AL139077) hypothetical protein Cj1086c [Campylobacter jejuni]
Length = 131
Score = 91.7 bits (226), Expect = 1e-18
Identities = 47/118 (39%), Positives = 78/118 (65%), Gaps = 1/118 (0%)
Query: 1 MAIFDNNNKS-ANAKTGPATIIAQGTKIKGELHLDYHLHVDGELEGVVHSKSTVVIGQTG 59
MAIF+ S ++ + T+I+ G +I+G+ + LHVDGEL G++HS+S VVIG+ G
Sbjct: 1 MAIFNKGGISPTSSSSSETTVISSGARIEGKFYFASMLHVDGELSGIIHSESIVVIGKNG 60
Query: 60 SVVGEIFTNKLVVSGKFTGTVEAEVVEIMPLGHLDGKISSQELVVERKGILIGETRPK 117
++ GE+ +K+VV+G F G +EA +EI+ G ++G IS+Q++ +E G G ++ K
Sbjct: 61 NLKGELQADKIVVNGCFEGQLEANSLEILAGGVVNGDISTQKISIENGGRFNGTSKIK 118
>ref|NP_233424.1| (NC_002506) Ccm2-related protein [Vibrio cholerae]
pir||G82384 Ccm2-related protein VCA1042 [imported] - Vibrio cholerae (group
O1 strain N16961)
gb|AAF96936.1| (AE004430) Ccm2-related protein [Vibrio cholerae]
Length = 133
Score = 78.6 bits (192), Expect = 1e-14
Identities = 38/113 (33%), Positives = 67/113 (58%), Gaps = 1/113 (0%)
Query: 1 MAIFDNNNKSANAKTGPATIIAQGTKIKGELHLDYHLHVDGELEGVVHSKSTVVIGQTGS 60
M IF + A ++ T+IA+G+ GEL ++ + VDG +EG +H T+V+ ++G+
Sbjct: 1 MGIFSKQRR-AKSQLSATTLIAKGSHFSGELKVENCIQVDGLVEGKLHVDKTLVVSESGT 59
Query: 61 VVGEIFTNKLVVSGKFTGTVEAEVVEIMPLGHLDGKISSQELVVERKGILIGE 113
+ GE+F L+++G F GT AE ++I G ++G + S +L +E G G+
Sbjct: 60 IHGEVFAEHLIINGFFEGTAHAEKIQIFSKGCVNGTLCSDDLSIEPGGRFTGD 112
>ref|NP_622493.1| (NC_003869) conserved hypothetical protein [Thermoanaerobacter
tengcongensis]
gb|AAM24097.1| (AE013050) conserved hypothetical protein [Thermoanaerobacter
tengcongensis]
Length = 129
Score = 57.0 bits (136), Expect = 3e-08
Identities = 31/117 (26%), Positives = 60/117 (50%), Gaps = 6/117 (5%)
Query: 19 TIIAQGTKIKGELHLDYHLHVDGELEGVVHSKSTVVIGQTGSVVGEIFTNKLVVSGKFTG 78
T+I + T +G + + L +DG G + +K V+IG+ + I ++ ++VSG+ G
Sbjct: 17 TVIGKNTSFEGTIRSEGTLRIDGNFSGQIETKGNVIIGEGAKIQANISSDNVIVSGEVKG 76
Query: 79 TVEAE-VVEIMPLGHLDGKISSQELVVERKGILIGETRPKNIQGGALLINEQEKKIE 134
+ A+ ++I G + G I Q LV+E + G+++ E++KK+E
Sbjct: 77 NILAKSQLQITSTGKVYGDIEVQNLVIEEGAVFEGKSKMSK-----SFPQEEDKKVE 128
>ref|NP_212379.1| (NC_001318) B. burgdorferi predicted coding region BB0245 [Borrelia
burgdorferi]
pir||E70130 hypothetical protein BB0245 - Lyme disease spirochete
gb|AAC66633.1| (AE001134) B. burgdorferi predicted coding region BB0245 [Borrelia
burgdorferi]
Length = 184
Score = 56.2 bits (134), Expect = 6e-08
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 19 TIIAQGTKIKGELHLDYHLHVDGELEGVVHSKSTVVIGQTGSVVGEIFTNKLVVSGKFTG 78
TI+ G KG+L + + +DG+ G + S V+IG++G V I N+LV+SG G
Sbjct: 24 TIVGVGDFFKGDLVSNNFIRLDGDFIGTISSTKRVIIGESGRVKSSIDANELVISGMVVG 83
Query: 79 TVEAE-VVEIMPLGHLDGKISSQELVVERKGILIG 112
+ A+ ++I G + G IS + + VE I+ G
Sbjct: 84 NIYAKSKIKIFASGCVIGNISCKSIEVEEGAIIDG 118
>ref|NP_407533.1| (NC_003143) putative membrane protein [Yersinia pestis]
emb|CAC93561.1| (AJ414160) putative membrane protein [Yersinia pestis]
Length = 223
Score = 55.8 bits (133), Expect = 8e-08
Identities = 29/110 (26%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 6 NNNKSANAKTGPATIIAQGTKIKGELHLDYHLHVDGELEG-VVHSKSTVVIGQTGSVVGE 64
+N NAK TIIA GT++KG ++LD + + G + G ++ ++ ++ + ++G + G
Sbjct: 76 SNASQENAKNN--TIIAAGTQLKGNINLDGDIQIYGVVMGDIIVNEGSIRLMRSGQIEGN 133
Query: 65 IFTNKLVVSGKFTGTVEAEVVEIMPLGHLDGKISSQELVVERKGILIGET 114
+ + V G+ G ++ +EI+ G L G + +++ GI +G++
Sbjct: 134 LTAPHITVDGRVEGVCISDDLEILEHGRLKGIVKGSNFSIKKGGIFVGQS 183
>ref|NP_218488.1| (NC_000919) conserved hypothetical protein [Treponema pallidum]
pir||B71372 conserved hypothetical protein TP0048 - syphilis spirochete
gb|AAC65044.1| (AE001190) conserved hypothetical protein [Treponema pallidum]
Length = 143
Score = 53.1 bits (126), Expect = 5e-07
Identities = 28/95 (29%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 19 TIIAQGTKIKGELHLDYHLHVDGELEGVVHSKSTVVIGQTGSVVGEIFTNKLVVSGKFTG 78
T+I G++I G + + + ++G+++G V + VVIG+ V G I ++V G G
Sbjct: 11 TLIGAGSRISGNVVVPGSVRIEGDVDGDVITTGHVVIGKRARVRGVIRVGSIIVGGMVEG 70
Query: 79 TVEA-EVVEIMPLGHLDGKISSQELVVERKGILIG 112
+ A E V+++P G + G + ++++VV+ + L G
Sbjct: 71 DIVASEAVQVLPSGVILGAVLTRKIVVDEQAFLDG 105
>emb|CAA03912.1| (AJ000084) Ccm2 protein [Proteus mirabilis]
Length = 170
Score = 51.6 bits (122), Expect = 1e-06
Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 19 TIIAQGTKIKGELHLDYHLHVDGELEGVVHSKSTVV-IGQTGSVVGEIFTNKLVVSGKFT 77
TIIA+GT +G++++D + + G++ G ++ K V+ + G V GE+ +++ G
Sbjct: 33 TIIAKGTVFQGDINVDGDIQIWGKISGNINVKDGVIRVMHAGQVEGELTAPDIIIDGFVK 92
Query: 78 GTVEAEVVEIMPLGHLDGKISSQELVVERKGILIGETRPKNIQGGAL 124
G A ++I+ G L G + ++R G+ G++ Q A+
Sbjct: 93 GICAANNLDILEHGELRGTSRCGSMSIKRGGVFTGQSEQVEHQAKAV 139
>emb|CAA03911.1| (AJ000084) Ccm1 protein [Proteus mirabilis]
Length = 228
Score = 51.6 bits (122), Expect = 1e-06
Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 19 TIIAQGTKIKGELHLDYHLHVDGELEGVVHSKSTVV-IGQTGSVVGEIFTNKLVVSGKFT 77
TIIA+GT +G++++D + + G++ G ++ K V+ + G V GE+ +++ G
Sbjct: 91 TIIAKGTVFQGDINVDGDIQIWGKISGNINVKDGVIRVMHAGQVEGELTAPDIIIDGFVK 150
Query: 78 GTVEAEVVEIMPLGHLDGKISSQELVVERKGILIGETRPKNIQGGAL 124
G A ++I+ G L G + ++R G+ G++ Q A+
Sbjct: 151 GICAANNLDILEHGELRGTSRCGSMSIKRGGVFTGQSEQVEHQAKAV 197
>ref|NP_421816.1| (NC_002696) conserved hypothetical protein [Caulobacter crescentus
CB15]
gb|AAK24984.1| (AE005965) conserved hypothetical protein [Caulobacter crescentus
CB15]
Length = 232
Score = 50.4 bits (119), Expect = 3e-06
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 11 ANAKTGPATIIAQGTKIKGELHLDYHLHVDGELEGVVHSKSTVVIGQTGSVVGEIFTNKL 70
A A+ PA++IAQG I+G++ D +H+D + G V +++G + G + +
Sbjct: 89 APARPKPASLIAQGLTIRGDVVGDIEVHLDCVVMGDV-KVGKLIVGPNARIEGAVVAQAM 147
Query: 71 VVSGKFTGTVEAEVVEIMPLGHLDGKISSQELVVE 105
+ G G V A+ V + +DG I+ ++L +E
Sbjct: 148 EIHGMVIGAVTAQSVRLYGTARVDGDITHEQLAME 182
>ref|NP_219781.1| (NC_000117) hypothetical protein [Chlamydia trachomatis]
pir||A71535 hypothetical protein CT276 - Chlamydia trachomatis (serotype D,
strain UW3/Cx)
gb|AAC67869.1| (AE001300) hypothetical protein [Chlamydia trachomatis]
Length = 194
Score = 50.1 bits (118), Expect = 4e-06
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 17 PATIIAQGTKIKGELHLDYHLHVDGELEGVVHSKSTVVIGQTGSVVGEIFTNKLVVSGKF 76
P T + +G KGEL + L +DG EG++ SK +++G G V I + V++G
Sbjct: 81 PETTLGEGVSFKGELTFERLLRIDGTFEGILVSKGKIIVGPQGYVKANIELEEAVIAGVV 140
Query: 77 TGTVEAE-VVEIMPLGHLDGKISSQELVVERKGILIGETRPKNIQGGALLINEQEK 131
G + V + + G I + L V+ L G +IQG NEQE+
Sbjct: 141 EGNITVTGRVSLQGRAMVTGDIQAGSLCVDEGVRLCGYV---SIQGAP--SNEQEE 191
>ref|NP_224625.1| (NC_000922) CT276 hypothetical protein [Chlamydophila pneumoniae
CWL029]
ref|NP_300482.1| (NC_002491) CT276 hypothetical protein [Chlamydophila pneumoniae
J138]
ref|NP_444877.1| (NC_002179) conserved hypothetical protein [Chlamydophila
pneumoniae AR39]
pir||C72081 conserved hypothetical protein CP0328 [imported] - Chlamydophila
pneumoniae (strains CWL029 and AR39)
gb|AAD18569.1| (AE001625) CT276 hypothetical protein [Chlamydophila pneumoniae
CWL029]
gb|AAF38183.1| (AE002194) conserved hypothetical protein [Chlamydophila pneumoniae
AR39]
dbj|BAA98633.1| (AP002546) CT276 hypothetical protein [Chlamydophila pneumoniae
J138]
Length = 195
Score = 50.1 bits (118), Expect = 4e-06
Identities = 28/97 (28%), Positives = 47/97 (47%), Gaps = 1/97 (1%)
Query: 17 PATIIAQGTKIKGELHLDYHLHVDGELEGVVHSKSTVVIGQTGSVVGEIFTNKLVVSGKF 76
P T + +G KGEL + L +DG EG++ SK ++IG G V +I + ++ G
Sbjct: 82 PETTLGEGVTFKGELAFERLLRIDGTFEGILVSKGKIIIGPKGVVKADIQLQEAIIEGVV 141
Query: 77 TGTVEAE-VVEIMPLGHLDGKISSQELVVERKGILIG 112
G + VE+ + G I + L V+ ++G
Sbjct: 142 EGNITVSGKVELRGGAIIKGDIQANTLCVDEGVRILG 178
>ref|NP_218708.1| (NC_000919) conserved hypothetical protein [Treponema pallidum]
pir||E71345 conserved hypothetical protein TP0267 - syphilis spirochete
gb|AAC65255.1| (AE001208) conserved hypothetical protein [Treponema pallidum]
Length = 121
Score = 50.1 bits (118), Expect = 4e-06
Identities = 26/88 (29%), Positives = 47/88 (52%), Gaps = 1/88 (1%)
Query: 19 TIIAQGTKIKGELHLDYHLHVDGELEGVVHSKSTVVIGQTGSVVGEIFTNKLVVSGKFTG 78
TI+A+ + G + + V G EG + S +++ + V EI +++V+ G+ G
Sbjct: 19 TILAEDVEFSGTVRFEEPFMVRGVFEGSIESSGDLMVEEQARVRAEIVADRVVIKGEVIG 78
Query: 79 TVEA-EVVEIMPLGHLDGKISSQELVVE 105
V A VV + P G L G +++ E+V+E
Sbjct: 79 NVTAMSVVRVFPCGRLIGDVTAPEVVLE 106
>ref|NP_296925.1| (NC_002620) conserved hypothetical protein [Chlamydia muridarum]
pir||H81689 conserved hypothetical protein TC0548 [imported] - Chlamydia
muridarum (strain Nigg)
gb|AAF39387.1| (AE002323) conserved hypothetical protein [Chlamydia muridarum]
Length = 195
Score = 48.9 bits (115), Expect = 1e-05
Identities = 33/119 (27%), Positives = 56/119 (46%), Gaps = 7/119 (5%)
Query: 17 PATIIAQGTKIKGELHLDYHLHVDGELEGVVHSKSTVVIGQTGSVVGEIFTNKLVVSGKF 76
P T + +G KGEL + L +DG EG++ SK +++G G V I + V++G
Sbjct: 82 PETTLGEGVSFKGELTFERLLRIDGNFEGILVSKGKIIVGPRGYVKANIDLEEAVIAGVV 141
Query: 77 TGTVEAE-VVEIMPLGHLDGKISSQELVVERKGILIGETRPKNIQGGALLINEQEKKIE 134
G + V + + G I + L V+ L G +IQG + Q+++I+
Sbjct: 142 EGNITVTGKVSLQGNAMVTGDIQAGSLCVDEGVRLCGYV---SIQGA---VPSQQEEID 194
>ref|NP_518614.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
emb|CAD14021.1| (AL646059) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
Length = 134
Score = 48.5 bits (114), Expect = 1e-05
Identities = 24/99 (24%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 19 TIIAQGTKIKGELHLDYHLHVDGELEGVV----HSKSTVVIGQTGSVVGEIFTNKLVVSG 74
T++ T+++GEL L +DG+++G V S +V+ + + GE+ L+++G
Sbjct: 13 TLLGARTRLEGELRFSGGLRIDGQIKGNVIGDPDKPSMLVVTDSARIEGEVHVGHLILNG 72
Query: 75 KFTGTVE-AEVVEIMPLGHLDGKISSQELVVERKGILIG 112
G V +E++E+ P ++G + L + + +++G
Sbjct: 73 TVVGPVHVSELLELQPKARIEGNVQYAALEMHQGAVVMG 111
>ref|NP_212672.1| (NC_001318) conserved hypothetical protein [Borrelia burgdorferi]
pir||A70167 conserved hypothetical protein BB0538 - Lyme disease spirochete
gb|AAC66899.1| (AE001155) conserved hypothetical protein [Borrelia burgdorferi]
Length = 132
Score = 46.2 bits (108), Expect = 6e-05
Identities = 23/102 (22%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 20 IIAQGTKIKGELHLDYHLHVDGELEGVVHSKSTVVIGQTGSVVGEIFTNKLVVSGKFTGT 79
+I + + +G + + + ++G+L+G+++S +++ + + V EI L+ GK G
Sbjct: 30 VIKKNFEFEGYIESNKPIIIEGKLKGLINSSNSIYLREKADVEAEIKCQHLLNHGKIKGN 89
Query: 80 VEA-EVVEIMPLGHLDGKISSQELVVERKGILIGETRPKNIQ 120
+EA + ++I G L G I ++EL ++ + G ++++
Sbjct: 90 IEALKTIKIYKTGKLIGNIKTKELFIDSGAMFKGNCEMEDLE 131
>ref|NP_420680.1| (NC_002696) conserved hypothetical protein [Caulobacter crescentus
CB15]
gb|AAK23848.1| (AE005861) conserved hypothetical protein [Caulobacter crescentus
CB15]
Length = 161
Score = 45.8 bits (107), Expect = 8e-05
Identities = 23/97 (23%), Positives = 51/97 (51%), Gaps = 1/97 (1%)
Query: 18 ATIIAQGTKIKGELHLDYHLHVDGELEGVVHSKSTVVIGQTGSVVGEIFTNKLVVSGKFT 77
A++++ I+G + + L +DG ++G V + +G+TG V G ++ + V G+
Sbjct: 39 ASLLSADLTIEGGVTGEGELQIDGVVKGDVRV-GRLTVGETGHVEGSVYAEAVEVRGRVV 97
Query: 78 GTVEAEVVEIMPLGHLDGKISSQELVVERKGILIGET 114
G + ++ V + ++DG I+ ++L +E G +
Sbjct: 98 GAITSKQVRLYGTSYVDGDITHEQLAMETGAFFQGRS 134
>ref|NP_640851.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM35387.1| (AE011676) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 149
Score = 45.4 bits (106), Expect = 1e-04
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 7 NNKSANAKTGPATIIAQGTKIKGELHLDYHLHVDGELEGVVHSK----STVVIGQTGSVV 62
N + A+T T+I I+G+L L+V+G + G V ++ +T+ + + GS+
Sbjct: 4 NKSNRGAQTVVDTLIGPQVVIRGDLTFSGGLYVEGRILGKVIAEDGASATLTVAEQGSIE 63
Query: 63 GEIFTNKLVVSGKFTGTVE-AEVVEIMPLGHLDGKISSQELVVERKGILIG 112
GE+ ++++G+ TG V AE VE+ + G + Q + + L G
Sbjct: 64 GEVRAPVVIINGQLTGDVHAAERVELAANARVQGNVHYQVVEMSAGAQLTG 114
>ref|NP_635879.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM39803.1| (AE012146) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 150
Score = 41.2 bits (95), Expect = 0.002
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 7 NNKSANAKTGPATIIAQGTKIKGELHLDYHLHVDGELEGVVHSK----STVVIGQTGSVV 62
N + A+T T+I I+G+L L+V+G + G V ++ + + + + G +
Sbjct: 4 NKSNRGAQTVVDTLIGPQVVIRGDLTFSGGLYVEGRILGKVIAEDGASAILTVAEQGCIE 63
Query: 63 GEIFTNKLVVSGKFTGTVE-AEVVEIMPLGHLDGKISSQELVVERKGILIG 112
GE+ ++++G+ TG V AE VE+ + G + Q + + L G
Sbjct: 64 GEVRAPVVIINGQLTGDVHAAERVELAANARVQGNVHYQVVEMSAGAQLTG 114
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.312 0.134 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,701,549
Number of Sequences: 1026957
Number of extensions: 3194152
Number of successful extensions: 6388
Number of sequences better than 1.0e-02: 20
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 6369
Number of HSP's gapped (non-prelim): 20
length of query: 136
length of database: 324,149,939
effective HSP length: 112
effective length of query: 24
effective length of database: 209,130,755
effective search space: 5019138120
effective search space used: 5019138120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 89 (38.9 bits)