BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644785|ref|NP_206955.1| hypothetical protein
[Helicobacter pylori 26695]
         (200 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_206955.1|  (NC_000915) hypothetical protein [Helicoba...   404  e-112
ref|NP_222865.1|  (NC_000921) putative [Helicobacter pylori ...   379  e-105
ref|NP_282797.1|  (NC_002163) putative periplasmic protein [...    81  8e-15

>ref|NP_206955.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||D64539 hypothetical protein HP0156 - Helicobacter pylori (strain 26695)
 gb|AAD07227.1| (AE000536) H. pylori predicted coding region HP0156 [Helicobacter
           pylori 26695]
          Length = 200

 Score =  404 bits (1037), Expect = e-112
 Identities = 200/200 (100%), Positives = 200/200 (100%)

Query: 1   MVVLKKMIGLVVVLSVLLARDNPFEPEINSKNLQGGFNGIYDSYFKEIHVDLPTSARILK 60
           MVVLKKMIGLVVVLSVLLARDNPFEPEINSKNLQGGFNGIYDSYFKEIHVDLPTSARILK
Sbjct: 1   MVVLKKMIGLVVVLSVLLARDNPFEPEINSKNLQGGFNGIYDSYFKEIHVDLPTSARILK 60

Query: 61  QITLTYQDIDGSIHSKVVGIDKGIDWHYPLKLSQHTLDPAAFEKRYQIQDFDFLMASNTM 120
           QITLTYQDIDGSIHSKVVGIDKGIDWHYPLKLSQHTLDPAAFEKRYQIQDFDFLMASNTM
Sbjct: 61  QITLTYQDIDGSIHSKVVGIDKGIDWHYPLKLSQHTLDPAAFEKRYQIQDFDFLMASNTM 120

Query: 121 ILRSPYKILRSFVLVNPYRIVLDTQKGPLDIYQNMDLNQKFFSHIKVGTHKDYYRITLIL 180
           ILRSPYKILRSFVLVNPYRIVLDTQKGPLDIYQNMDLNQKFFSHIKVGTHKDYYRITLIL
Sbjct: 121 ILRSPYKILRSFVLVNPYRIVLDTQKGPLDIYQNMDLNQKFFSHIKVGTHKDYYRITLIL 180

Query: 181 DGKYRYLLEEKNGAYELKLK 200
           DGKYRYLLEEKNGAYELKLK
Sbjct: 181 DGKYRYLLEEKNGAYELKLK 200



>ref|NP_222865.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||B71968 hypothetical protein jhp0144 - Helicobacter pylori (strain J99)
 gb|AAD05725.1| (AE001453) putative [Helicobacter pylori J99]
          Length = 198

 Score =  379 bits (974), Expect = e-105
 Identities = 187/198 (94%), Positives = 192/198 (96%)

Query: 3   VLKKMIGLVVVLSVLLARDNPFEPEINSKNLQGGFNGIYDSYFKEIHVDLPTSARILKQI 62
           +LKKMIGLV VLSVLLARDNPFEPEINSKNLQGGF+GIYD Y KEIHVDLPTSARILK+I
Sbjct: 1   MLKKMIGLVAVLSVLLARDNPFEPEINSKNLQGGFSGIYDDYLKEIHVDLPTSARILKKI 60

Query: 63  TLTYQDIDGSIHSKVVGIDKGIDWHYPLKLSQHTLDPAAFEKRYQIQDFDFLMASNTMIL 122
           TLTYQDIDGSIHSKVVGIDK IDWHYPLKLSQHTL+  AFEKRYQIQDFDFLMA+NTMIL
Sbjct: 61  TLTYQDIDGSIHSKVVGIDKSIDWHYPLKLSQHTLNQDAFEKRYQIQDFDFLMANNTMIL 120

Query: 123 RSPYKILRSFVLVNPYRIVLDTQKGPLDIYQNMDLNQKFFSHIKVGTHKDYYRITLILDG 182
           RSPYKILRSFVLVNPYRIVLDTQKGPLDIYQNMDLNQKFFSHIKVGTHKDYYRITLILDG
Sbjct: 121 RSPYKILRSFVLVNPYRIVLDTQKGPLDIYQNMDLNQKFFSHIKVGTHKDYYRITLILDG 180

Query: 183 KYRYLLEEKNGAYELKLK 200
           KYRYLLEEKNGAYELKLK
Sbjct: 181 KYRYLLEEKNGAYELKLK 198



>ref|NP_282797.1| (NC_002163) putative periplasmic protein [Campylobacter jejuni]
 pir||C81264 probable periplasmic protein Cj1670c [imported] - Campylobacter
           jejuni (strain NCTC 11168)
 emb|CAB73657.1| (AL139079) putative periplasmic protein [Campylobacter jejuni]
          Length = 220

 Score = 80.9 bits (198), Expect = 8e-15
 Identities = 59/216 (27%), Positives = 101/216 (46%), Gaps = 35/216 (16%)

Query: 12  VVLSVLLARDNPFEPEINSKNLQGGFNGIYDSYFKEIHVDLPTSARILKQITLTYQDIDG 71
           +  S+L A +NPF+ + N          +    F++  V   +SARILK IT  Y ++DG
Sbjct: 11  IFTSLLYADENPFKTDQN-------ITLVAPPEFQKEEVKFNSSARILKSITFNYINLDG 63

Query: 72  SIHSKVVGIDKGIDWHYPLKLSQ-HTLDPAAF--------EKRYQIQD------------ 110
           S     + ++K IDWH    +S+  + DP+          EK    Q+            
Sbjct: 64  SEDKIDLDVNKSIDWHDTYTISRFKSPDPSKVLDVSVTIPEKNSSKQESNSTANVEIPLQ 123

Query: 111 ----FDFL---MASNTMILRSPYKILRSFVLVNPYRIVLDTQKGPLDIYQNMDLNQKFFS 163
               +DF+   +  N + L +  +++  F + NP +IV+D +   +   +N+ L+   F 
Sbjct: 124 VAKIYDFISYAVYKNKIKLNTSDEMITDFSVGNPSKIVIDFRSKMISPTKNIRLSNSIFK 183

Query: 164 HIKVGTHKDYYRITLILDGKYRYLLEEKNGAYELKL 199
            I  G+HK YYR+ + LDG Y Y +++    Y + L
Sbjct: 184 RIDFGSHKGYYRLVIYLDGTYNYNIQKDATGYMINL 219



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.323    0.143    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,288,147
Number of Sequences: 1026957
Number of extensions: 5174994
Number of successful extensions: 9245
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9241
Number of HSP's gapped (non-prelim): 4
length of query: 200
length of database: 324,149,939
effective HSP length: 115
effective length of query: 85
effective length of database: 206,049,884
effective search space: 17514240140
effective search space used: 17514240140
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 94 (40.8 bits)