BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646153|ref|NP_208337.1| hypothetical protein
[Helicobacter pylori 26695]
         (170 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_208337.1|  (NC_000915) hypothetical protein [Helicoba...   342  1e-93
ref|NP_224171.1|  (NC_000921) putative [Helicobacter pylori ...   334  2e-91
ref|NP_282238.1|  (NC_002163) putative lipoprotein [Campylob...    91  5e-18

>ref|NP_208337.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||B64713 hypothetical protein HP1546 - Helicobacter pylori (strain 26695)
 gb|AAD08590.1| (AE000652) H. pylori predicted coding region HP1546 [Helicobacter
           pylori 26695]
          Length = 170

 Score =  342 bits (877), Expect = 1e-93
 Identities = 170/170 (100%), Positives = 170/170 (100%)

Query: 1   MRALLFFILLLWFKGCGYKPIAAYAQNALGDSVYVKLIVNLPNPENSVEFKDLMNRLVVQ 60
           MRALLFFILLLWFKGCGYKPIAAYAQNALGDSVYVKLIVNLPNPENSVEFKDLMNRLVVQ
Sbjct: 1   MRALLFFILLLWFKGCGYKPIAAYAQNALGDSVYVKLIVNLPNPENSVEFKDLMNRLVVQ 60

Query: 61  RFQSRLASEKDADSIIIIEITNVTDTSITQNKEGFTTFYRATVSVNYTYDNKRGTQKTFQ 120
           RFQSRLASEKDADSIIIIEITNVTDTSITQNKEGFTTFYRATVSVNYTYDNKRGTQKTFQ
Sbjct: 61  RFQSRLASEKDADSIIIIEITNVTDTSITQNKEGFTTFYRATVSVNYTYDNKRGTQKTFQ 120

Query: 121 DSGYYNYAVNLQDPLNTYQNRYYAINQAVEQTLTKFVAQIAYEGKFNNEK 170
           DSGYYNYAVNLQDPLNTYQNRYYAINQAVEQTLTKFVAQIAYEGKFNNEK
Sbjct: 121 DSGYYNYAVNLQDPLNTYQNRYYAINQAVEQTLTKFVAQIAYEGKFNNEK 170



>ref|NP_224171.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||H71805 hypothetical protein jhp1453 - Helicobacter pylori (strain J99)
 gb|AAD07035.1| (AE001567) putative [Helicobacter pylori J99]
          Length = 170

 Score =  334 bits (857), Expect = 2e-91
 Identities = 165/170 (97%), Positives = 168/170 (98%)

Query: 1   MRALLFFILLLWFKGCGYKPIAAYAQNALGDSVYVKLIVNLPNPENSVEFKDLMNRLVVQ 60
           MR LLFFILLLWFKGCGYKPIA YAQNALGDSVYVKLIVNLPNPENSVEFKDLMNRLVVQ
Sbjct: 1   MRVLLFFILLLWFKGCGYKPIATYAQNALGDSVYVKLIVNLPNPENSVEFKDLMNRLVVQ 60

Query: 61  RFQSRLASEKDADSIIIIEITNVTDTSITQNKEGFTTFYRATVSVNYTYDNKRGTQKTFQ 120
           RFQ+RLASEKDADSIIIIEITNVTDTSITQNKEGFTTFYRATVSVNYTYDNKRGTQKTFQ
Sbjct: 61  RFQNRLASEKDADSIIIIEITNVTDTSITQNKEGFTTFYRATVSVNYTYDNKRGTQKTFQ 120

Query: 121 DSGYYNYAVNLQDPLNTYQNRYYAINQAVEQTLTKFVAQIAYEGKFNNEK 170
           +SGYYNYAVNLQDPLNT+QNRYYAINQAVEQTLTKFVAQIAYEGKFNNEK
Sbjct: 121 NSGYYNYAVNLQDPLNTFQNRYYAINQAVEQTLTKFVAQIAYEGKFNNEK 170



>ref|NP_282238.1| (NC_002163) putative lipoprotein [Campylobacter jejuni]
 pir||E81312 probable lipoprotein Cj1090c [imported] - Campylobacter jejuni
           (strain NCTC 11168)
 emb|CAB73345.1| (AL139077) putative lipoprotein [Campylobacter jejuni]
          Length = 170

 Score = 90.9 bits (224), Expect = 5e-18
 Identities = 45/170 (26%), Positives = 93/170 (54%), Gaps = 1/170 (0%)

Query: 1   MRALLFFILLLWFKGCGYKPIAAYAQNALGDSVYVKLIVNLPNPENSVEFKDLMNRLVVQ 60
           M+ +L F + L+   CGY P +  A N   + VYV + ++  +P+NS+   D +  +V+ 
Sbjct: 1   MKKILIFCIGLFLGACGYIPTSKIANNIFDEKVYVNVELSQQDPKNSIYVADTLKEMVIS 60

Query: 61  RFQSRLASEKDADSIIIIEITNVTDTSITQNKEGFTTFYRATVSVNYTYDNKRGTQKTFQ 120
           +   +LA + +AD +I +++ N+    +  +K G+   Y+A +++++    K G+ + F 
Sbjct: 61  KLGRKLALKHEADDVINVKMNNLEFIPLAYDKNGYVISYKAKLNLDFNVVFKDGSSQAFS 120

Query: 121 DSGYYNYAVNLQDPLNTYQNRYYAINQAVEQTLTKFVAQIAYEGKFNNEK 170
            SG YN+ ++  + + +   RY AI  A  +   +F++ IA +G+  + K
Sbjct: 121 TSGSYNFEIS-PNSIISDSARYEAIRAASSEAFDEFISVIAIKGQKRDSK 169



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.319    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,406,503
Number of Sequences: 1026957
Number of extensions: 3755956
Number of successful extensions: 9152
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9149
Number of HSP's gapped (non-prelim): 3
length of query: 170
length of database: 324,149,939
effective HSP length: 112
effective length of query: 58
effective length of database: 209,130,755
effective search space: 12129583790
effective search space used: 12129583790
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 93 (40.4 bits)