BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646158|ref|NP_208342.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(127 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208342.1| (NC_000915) conserved hypothetical secrete... 244 2e-64
ref|NP_224166.1| (NC_000921) putative [Helicobacter pylori ... 168 9e-42
ref|NP_282242.1| (NC_002163) putative membrane protein [Cam... 112 1e-24
ref|NP_455001.1| (NC_003198) putative membrane protein [Sal... 78 2e-14
ref|NP_286146.1| (NC_002655) orf, hypothetical protein [Esc... 75 1e-13
emb|CAA39633.1| (X56175) ORF 3 (AA 1 - 110) [Escherichia coli] 75 2e-13
ref|NP_406665.1| (NC_003143) putative membrane protein [Yer... 73 6e-13
ref|NP_539994.1| (NC_003317) Hypothetical Exported Protein ... 70 5e-12
sp|Q9ZG87|YAJC_BRUME Immunogenic membrane protein yajC >gi|... 70 5e-12
ref|NP_520835.1| (NC_003295) PROBABLE TRANSMEMBRANE PROTEIN... 69 9e-12
ref|NP_385644.1| (NC_003047) PROBABLE YAJC PROTEIN [Sinorhi... 66 8e-11
ref|NP_213859.1| (NC_000918) hypothetical protein [Aquifex ... 65 1e-10
ref|NP_562860.1| (NC_003366) conserved hypothetical protein... 65 1e-10
ref|NP_438411.1| (NC_000907) conserved hypothetical protein... 64 2e-10
ref|NP_224167.1| (NC_000921) PROTEIN-EXPORT MEMBRANE PROTEI... 64 2e-10
ref|NP_102742.1| (NC_002678) probable membrane protein [Mes... 64 2e-10
ref|NP_642827.1| (NC_003919) preprotein translocase YajC su... 64 3e-10
gb|AAF34181.1|AF217543_2 (AF217543) putative membrane prote... 64 4e-10
ref|NP_420799.1| (NC_002696) preprotein translocase, YajC s... 63 5e-10
ref|NP_637731.1| (NC_003902) preprotein translocase YajC su... 63 7e-10
ref|NP_390648.1| (NC_000964) similar to hypothetical protei... 62 9e-10
ref|NP_242095.1| (NC_002570) BH1229~unknown conserved prote... 62 1e-09
ref|NP_208341.1| (NC_000915) protein-export membrane protei... 61 2e-09
gb|AAL89762.1|AF484425_3 (AF484425) YajC [Bartonella henselae] 61 2e-09
ref|NP_245165.1| (NC_002663) YajC [Pasteurella multocida] >... 61 3e-09
ref|NP_273650.1| (NC_003112) conserved hypothetical protein... 60 3e-09
ref|NP_239966.1| (NC_002528) hypothetical protein [Buchnera... 60 3e-09
ref|NP_360530.1| (NC_003103) unknown [Rickettsia conorii] >... 60 4e-09
ref|NP_252511.1| (NC_002516) conserved hypothetical protein... 60 4e-09
ref|NP_465054.1| (NC_003210) similar to unknown proteins [L... 60 4e-09
ref|NP_470900.1| (NC_003212) similar to unknown proteins [L... 60 4e-09
ref|NP_230391.1| (NC_002505) conserved hypothetical protein... 60 6e-09
ref|NP_660971.1| (NC_002932) conserved hypothetical protein... 59 7e-09
ref|NP_212785.1| (NC_001318) conserved hypothetical protein... 59 7e-09
ref|NP_283606.1| (NC_003116) hypothetical protein NMA0811 [... 59 7e-09
gb|AAF80361.1|AF157831_3 (AF157831) YajC homolog [Bartonell... 59 1e-08
ref|NP_228668.1| (NC_000853) hypothetical protein [Thermoto... 59 1e-08
ref|NP_660483.1| (NC_004061) hypothetical 11.9 kD protein i... 58 2e-08
ref|NP_622811.1| (NC_003869) Preprotein translocase subunit... 57 4e-08
ref|NP_220954.1| (NC_000963) unknown [Rickettsia prowazekii... 55 1e-07
ref|NP_354563.1| (NC_003062) AGR_C_2879p [Agrobacterium tum... 54 3e-07
ref|NP_297517.1| (NC_002488) preprotein translocase YajC su... 53 5e-07
ref|NP_372162.1| (NC_002758) conserved hypothetical protein... 52 2e-06
ref|NP_658444.1| (NC_003995) DUF219, Uncharacterized secret... 51 2e-06
sp|P58007|Y40A_TREPA Hypothetical protein TP0409.1 48 2e-05
ref|NP_604232.1| (NC_003454) Protein translocase subunit Ya... 45 1e-04
ref|NP_348898.1| (NC_003030) Uncharacterized secreted prote... 44 3e-04
dbj|BAA11328.1| (D78257) ORF11 [Enterococcus faecalis] 40 0.004
>ref|NP_208342.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
sp|O26075|YF51_HELPY Hypothetical protein HP1551
pir||G64713 conserved hypothetical secreted protein HP1551 - Helicobacter
pylori (strain 26695)
gb|AAD08591.1| (AE000653) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 127
Score = 244 bits (622), Expect = 2e-64
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MGQIKDILTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVL 60
MGQIKDILTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVL
Sbjct: 1 MGQIKDILTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVL 60
Query: 61 KAEANFFSVKLNDDTTAKLSKNYVAFKLDELDQFGLAEPIVIQQGREEISAKLSGAKTLK 120
KAEANFFSVKLNDDTTAKLSKNYVAFKLDELDQFGLAEPIVIQQGREEISAKLSGAKTLK
Sbjct: 61 KAEANFFSVKLNDDTTAKLSKNYVAFKLDELDQFGLAEPIVIQQGREEISAKLSGAKTLK 120
Query: 121 QRQITTE 127
QRQITTE
Sbjct: 121 QRQITTE 127
>ref|NP_224166.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZJ67|YF51_HELPJ Hypothetical protein JHP1448
pir||C71805 hypothetical protein jhp1448 - Helicobacter pylori (strain J99)
gb|AAD07025.1| (AE001567) putative [Helicobacter pylori J99]
Length = 97
Score = 168 bits (426), Expect = 9e-42
Identities = 85/90 (94%), Positives = 88/90 (97%)
Query: 1 MGQIKDILTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVL 60
MGQ K+I+TTLLPL+VLFLIFYFLIVRPQRQQQKKHKEMIE LTKGDKIVTQGGLIVEVL
Sbjct: 1 MGQTKEIITTLLPLLVLFLIFYFLIVRPQRQQQKKHKEMIEGLTKGDKIVTQGGLIVEVL 60
Query: 61 KAEANFFSVKLNDDTTAKLSKNYVAFKLDE 90
KAEANFFSVKLNDDTTAKLSKNYVAFKLDE
Sbjct: 61 KAEANFFSVKLNDDTTAKLSKNYVAFKLDE 90
>ref|NP_282242.1| (NC_002163) putative membrane protein [Campylobacter jejuni]
pir||A81313 probable membrane protein Cj1094c [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB73349.1| (AL139077) putative membrane protein [Campylobacter jejuni]
Length = 90
Score = 112 bits (279), Expect = 1e-24
Identities = 54/84 (64%), Positives = 70/84 (83%), Gaps = 1/84 (1%)
Query: 7 ILTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLKAEANF 66
ILT+LLPLVVLF IFYFL++RPQ++Q K HK+M+ESL KGDKI+T GGLI EV+K E +F
Sbjct: 6 ILTSLLPLVVLFAIFYFLVIRPQQKQAKAHKQMLESLQKGDKIITNGGLICEVVKPEEDF 65
Query: 67 FSVKLNDD-TTAKLSKNYVAFKLD 89
VKLN+D TAK+S+ ++A K+D
Sbjct: 66 IKVKLNEDNVTAKISREFIAKKID 89
>ref|NP_455001.1| (NC_003198) putative membrane protein [Salmonella enterica subsp.
enterica serovar Typhi]
ref|NP_459401.1| (NC_003197) preprotein translocase IISP family, membrane subunit
[Salmonella typhimurium LT2]
gb|AAL19360.1| (AE008714) preprotein translocase IISP family, membrane subunit
[Salmonella typhimurium LT2]
emb|CAD08862.1| (AL627266) putative membrane protein [Salmonella enterica subsp.
enterica serovar Typhi]
Length = 110
Score = 77.8 bits (190), Expect = 2e-14
Identities = 35/79 (44%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 8 LTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLK-AEANF 66
++ +L LVV LIFYF+I+RPQ+++ K+HK++++S+ KGD+++T GGL+ V K AEA +
Sbjct: 21 MSLILMLVVFGLIFYFMILRPQQKRTKEHKKLMDSIAKGDEVLTNGGLVGRVTKVAEAGY 80
Query: 67 FSVKLNDDTTAKLSKNYVA 85
++ LND T + +++VA
Sbjct: 81 IAIALNDTTEVVIKRDFVA 99
>ref|NP_286146.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_308485.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
ref|NP_414941.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P19677|YAJC_ECOLI Hypothetical protein yajC
pir||D38530 preprotein translocase chain yajC - Escherichia coli
gb|AAA24668.1| (M63939) ORF [Escherichia coli]
gb|AAC60468.1| (S68715) YajC [Escherichia coli]
dbj|BAA05483.1| (D26469) ORF [Shigella flexneri]
gb|AAB40163.1| (U82664) hypothetical 11.9 kd protein [Escherichia coli]
gb|AAC73510.1| (AE000147) orf, hypothetical protein [Escherichia coli K12]
gb|AAG54754.1|AE005220_3 (AE005220) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB33881.1| (AP002551) hypothetical protein [Escherichia coli O157:H7]
prf||2005253A yacJ protein [Escherichia coli]
Length = 110
Score = 75.5 bits (184), Expect = 1e-13
Identities = 34/79 (43%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
Query: 8 LTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLK-AEANF 66
++ +L LVV LIFYF+I+RPQ+++ K+HK++++S+ KGD+++T GGL+ V K AE +
Sbjct: 21 MSLILMLVVFGLIFYFMILRPQQKRTKEHKKLMDSIAKGDEVLTNGGLVGRVTKVAENGY 80
Query: 67 FSVKLNDDTTAKLSKNYVA 85
++ LND T + +++VA
Sbjct: 81 IAIALNDTTEVVIKRDFVA 99
>emb|CAA39633.1| (X56175) ORF 3 (AA 1 - 110) [Escherichia coli]
Length = 110
Score = 74.7 bits (182), Expect = 2e-13
Identities = 34/79 (43%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Query: 8 LTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLK-AEANF 66
++ +L LVV LIFYF+I+RPQ+++ K+HK++++S+ KGD+++T GGL+ V K AE +
Sbjct: 21 MSLILMLVVFGLIFYFMILRPQQKRTKEHKKLMDSIAKGDEVLTNGGLVGRVTKVAENGY 80
Query: 67 FSVKLNDDTTAKLSKNYVA 85
+ LND T + +++VA
Sbjct: 81 IRIALNDTTEVVIKRDFVA 99
>ref|NP_406665.1| (NC_003143) putative membrane protein [Yersinia pestis]
emb|CAC92425.1| (AJ414155) putative membrane protein [Yersinia pestis]
Length = 111
Score = 72.8 bits (177), Expect = 6e-13
Identities = 35/84 (41%), Positives = 58/84 (68%), Gaps = 1/84 (1%)
Query: 3 QIKDILTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLK- 61
Q + + L+ LVV LIFYF+I+RPQ+++ K+HK++++S+ KGD+++T GG I V K
Sbjct: 17 QGNSMTSMLIMLVVFGLIFYFMILRPQQKRAKEHKKLMDSIGKGDEVLTSGGFIGRVTKV 76
Query: 62 AEANFFSVKLNDDTTAKLSKNYVA 85
AE + + LND T + +++VA
Sbjct: 77 AETGYVVIALNDTTEVMIKRDFVA 100
>ref|NP_539994.1| (NC_003317) Hypothetical Exported Protein [Brucella melitensis]
gb|AAL52258.1| (AE009547) Hypothetical Exported Protein [Brucella melitensis]
Length = 120
Score = 69.7 bits (169), Expect = 5e-12
Identities = 29/56 (51%), Positives = 45/56 (79%)
Query: 6 DILTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLK 61
D+L ++LP +++F+I YFLI+RPQR Q KK +EM+ S+ +GD +VT GG++ +VLK
Sbjct: 25 DMLMSILPFILIFVIMYFLIIRPQRTQMKKRQEMLNSVRRGDTVVTGGGIVGKVLK 80
>sp|Q9ZG87|YAJC_BRUME Immunogenic membrane protein yajC
gb|AAC83690.1| (AF085217) putative membrane protein [Brucella melitensis biovar
Abortus]
Length = 113
Score = 69.7 bits (169), Expect = 5e-12
Identities = 29/56 (51%), Positives = 45/56 (79%)
Query: 6 DILTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLK 61
D+L ++LP +++F+I YFLI+RPQR Q KK +EM+ S+ +GD +VT GG++ +VLK
Sbjct: 18 DMLMSILPFILIFVIMYFLIIRPQRTQMKKRQEMLNSVRRGDTVVTGGGIVGKVLK 73
>ref|NP_520835.1| (NC_003295) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia
solanacearum]
emb|CAD16421.1| (AL646071) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia
solanacearum]
Length = 109
Score = 68.9 bits (167), Expect = 9e-12
Identities = 28/77 (36%), Positives = 55/77 (71%)
Query: 8 LTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLKAEANFF 67
L + LP++++F++ +F+++RPQ ++QK+ K M+E+L KGD++VT GG++ +V K +
Sbjct: 21 LMSFLPIILMFVVLWFIMIRPQMKRQKETKTMLEALAKGDEVVTAGGILGKVTKVTDQYI 80
Query: 68 SVKLNDDTTAKLSKNYV 84
+V++ +T + KN V
Sbjct: 81 TVEVAPNTELTVQKNAV 97
>ref|NP_385644.1| (NC_003047) PROBABLE YAJC PROTEIN [Sinorhizobium meliloti]
emb|CAC46117.1| (AL591787) PROBABLE YAJC PROTEIN [Sinorhizobium meliloti]
Length = 110
Score = 65.9 bits (159), Expect = 8e-11
Identities = 25/56 (44%), Positives = 46/56 (81%)
Query: 6 DILTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLK 61
DIL ++LP +++F++ YFLI+RPQR Q K+ +E+++++ +GD++VT GG++ +V K
Sbjct: 19 DILMSILPFLLIFVVMYFLIIRPQRAQMKRREELLKNIRRGDQVVTGGGIVGKVTK 74
>ref|NP_213859.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
sp|O67295|YC54_AQUAE Hypothetical protein AQ_1254
pir||D70408 conserved hypothetical protein aq_1254 - Aquifex aeolicus
gb|AAC07266.1| (AE000731) hypothetical protein [Aquifex aeolicus]
Length = 102
Score = 65.5 bits (158), Expect = 1e-10
Identities = 28/78 (35%), Positives = 54/78 (68%)
Query: 7 ILTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLKAEANF 66
+L ++ LV +FL+FYFLI+RPQ++++++H++ +ESL KGDK++T G+ V++
Sbjct: 10 LLFQIIFLVAIFLMFYFLIIRPQKKERERHRKFLESLKKGDKVITSSGIWGTVVEIGDRT 69
Query: 67 FSVKLNDDTTAKLSKNYV 84
++K++ +T SK +
Sbjct: 70 ITLKVDANTKITFSKEAI 87
>ref|NP_562860.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB81650.1| (AP003192) conserved hypothetical protein [Clostridium
perfringens]
Length = 89
Score = 65.1 bits (157), Expect = 1e-10
Identities = 29/86 (33%), Positives = 57/86 (65%), Gaps = 1/86 (1%)
Query: 5 KDILTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLKAEA 64
+ I T +LP +++F +FYFL++ P+++++KK+ MI+ L DKI+T+GG+I ++K +
Sbjct: 4 QQIATMVLPFILMFGVFYFLLILPEKKRKKKYDAMIDELKVNDKIITRGGIIGRIVKLKD 63
Query: 65 NFFSVKLNDD-TTAKLSKNYVAFKLD 89
+ ++ D T + SK ++ K+D
Sbjct: 64 DSVIIETTQDRTKIEFSKQGISSKID 89
>ref|NP_438411.1| (NC_000907) conserved hypothetical protein [Haemophilus
influenzae Rd]
sp|P44592|YAJC_HAEIN Hypothetical protein HI0241
pir||A64146 yajC protein homolog HI0241 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC21909.1| (U32710) conserved hypothetical protein [Haemophilus influenzae
Rd]
Length = 97
Score = 64.3 bits (155), Expect = 2e-10
Identities = 29/79 (36%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 8 LTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLKAE--AN 65
++TL V+ LIFYF+I RPQ ++ K+HK+++ L KG +++T GG+I ++ K ++
Sbjct: 7 MSTLFIFVIFGLIFYFMIYRPQAKRNKEHKKLMSELAKGTEVLTAGGVIGKITKVTEGSD 66
Query: 66 FFSVKLNDDTTAKLSKNYV 84
+ LND T +++NY+
Sbjct: 67 SIVIALNDTTEITINRNYI 85
>ref|NP_224167.1| (NC_000921) PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobacter pylori
J99]
sp|Q9ZJ66|SECD_HELPJ Protein-export membrane protein
pir||D71805 protein-export membrane protein - Helicobacter pylori (strain J99)
gb|AAD07024.1| (AE001567) PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobacter pylori
J99]
Length = 526
Score = 64.3 bits (155), Expect = 2e-10
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 4/68 (5%)
Query: 60 LKAEANFFSVKLNDDTTAKLSKNYVAFKL----DELDQFGLAEPIVIQQGREEISAKLSG 115
+K EA F+SVKL +L KN + + + LDQFGLAEP+VIQQGREEIS +L G
Sbjct: 116 IKKEAEFYSVKLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEPVVIQQGREEISVQLPG 175
Query: 116 AKTLKQRQ 123
KTL++ +
Sbjct: 176 IKTLEEER 183
>ref|NP_102742.1| (NC_002678) probable membrane protein [Mesorhizobium loti]
dbj|BAB48528.1| (AP002996) probable membrane protein [Mesorhizobium loti]
Length = 113
Score = 64.3 bits (155), Expect = 2e-10
Identities = 32/85 (37%), Positives = 51/85 (59%), Gaps = 1/85 (1%)
Query: 2 GQIKDILTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLK 61
G D+ ++LP V++F+I YFLI+RPQR Q KK EM+ ++ +GD +VT GG + +V K
Sbjct: 13 GASPDMFISILPFVLIFVIMYFLIIRPQRTQLKKRGEMLAAVRRGDTVVTGGGFVGKVTK 72
Query: 62 A-EANFFSVKLNDDTTAKLSKNYVA 85
+ N + L T ++ +A
Sbjct: 73 VIDDNELEIDLGGGTKVTALRSTIA 97
>ref|NP_642827.1| (NC_003919) preprotein translocase YajC subunit [Xanthomonas
axonopodis pv. citri str. 306]
gb|AAM37363.1| (AE011890) preprotein translocase YajC subunit [Xanthomonas
axonopodis pv. citri str. 306]
Length = 117
Score = 63.9 bits (154), Expect = 3e-10
Identities = 29/87 (33%), Positives = 54/87 (61%), Gaps = 1/87 (1%)
Query: 2 GQIKDILTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLK 61
G + + T LP ++L + YFL++RPQ ++QK+HK +++ L +GD+++T GG+ +
Sbjct: 23 GPMGGLSTFALP-IILIAVMYFLMIRPQMKRQKEHKALLDKLARGDEVITSGGVAGVITD 81
Query: 62 AEANFFSVKLNDDTTAKLSKNYVAFKL 88
NF SV++ D+ ++ K+ V L
Sbjct: 82 IGDNFISVEVADNVRIRVQKSAVGHVL 108
>gb|AAF34181.1|AF217543_2 (AF217543) putative membrane protein [Sinorhizobium meliloti]
Length = 110
Score = 63.5 bits (153), Expect = 4e-10
Identities = 25/56 (44%), Positives = 45/56 (79%)
Query: 6 DILTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLK 61
DIL ++LP +++F+ YFLI+RPQR Q K+ +E+++++ +GD++VT GG++ +V K
Sbjct: 19 DILMSILPFLLIFVEMYFLIIRPQRAQMKRREELLKNIRRGDQVVTGGGIVGKVTK 74
>ref|NP_420799.1| (NC_002696) preprotein translocase, YajC subunit [Caulobacter
crescentus CB15]
gb|AAK23967.1| (AE005873) preprotein translocase, YajC subunit [Caulobacter
crescentus CB15]
Length = 103
Score = 63.2 bits (152), Expect = 5e-10
Identities = 25/84 (29%), Positives = 52/84 (61%)
Query: 2 GQIKDILTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLK 61
G L +LP++++ ++FYF+++RPQ+++QK+H M+ +L + D +V G+I ++++
Sbjct: 4 GSTAATLMNILPIILMVVLFYFMLIRPQQKRQKEHLNMLNNLKRNDTVVLSSGMIGKIVR 63
Query: 62 AEANFFSVKLNDDTTAKLSKNYVA 85
E V++ T K+ K +A
Sbjct: 64 VEDREVGVEIATGVTVKVVKGMIA 87
>ref|NP_637731.1| (NC_003902) preprotein translocase YajC subunit [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gb|AAM41655.1| (AE012347) preprotein translocase YajC subunit [Xanthomonas
campestris pv. campestris str. ATCC 33913]
Length = 117
Score = 62.8 bits (151), Expect = 7e-10
Identities = 27/87 (31%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 2 GQIKDILTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLK 61
G + + T LP ++L + YFL++RPQ ++QK+HK +++ L++GD+++T GG+ +
Sbjct: 23 GPMGSLSTFALP-IILIAVMYFLMIRPQMKRQKEHKALLDKLSRGDEVITSGGVAGVITD 81
Query: 62 AEANFFSVKLNDDTTAKLSKNYVAFKL 88
NF +V++ D+ ++ ++ V L
Sbjct: 82 IGENFITVEVADNVRIRVQRSAVGHVL 108
>ref|NP_390648.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
sp|O32052|YRBF_BACSU Hypothetical protein yrbF
pir||E69972 conserved hypothetical protein yrbF - Bacillus subtilis
emb|CAB14730.1| (Z99118) similar to hypothetical proteins [Bacillus subtilis]
emb|CAB75334.1| (Y15896) hypothetical protein [Bacillus subtilis]
Length = 89
Score = 62.4 bits (150), Expect = 9e-10
Identities = 29/68 (42%), Positives = 46/68 (67%)
Query: 8 LTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLKAEANFF 67
L TL+P++++F + YFL++RPQ++QQK ++M E L KGD +VT GGL V + +
Sbjct: 6 LGTLVPIILMFAVLYFLLIRPQQKQQKAVRQMQEELKKGDSVVTIGGLHGTVDSIDESKV 65
Query: 68 SVKLNDDT 75
+K D+T
Sbjct: 66 VIKTGDNT 73
>ref|NP_242095.1| (NC_002570) BH1229~unknown conserved protein [Bacillus
halodurans]
sp|Q9KDI4|YC29_BACHD Hypothetical protein BH1229
dbj|BAB04948.1| (AP001511) BH1229~unknown conserved protein [Bacillus halodurans]
Length = 88
Score = 61.6 bits (148), Expect = 1e-09
Identities = 28/64 (43%), Positives = 47/64 (72%)
Query: 11 LLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLKAEANFFSVK 70
L+PL+++F IFYFL++RPQ+++QK+ +EM +L +GDKIVT GGL + + + +
Sbjct: 8 LIPLILMFAIFYFLLIRPQQKRQKQIQEMHNNLQRGDKIVTIGGLHGTIDSLDESTVVIL 67
Query: 71 LNDD 74
+ND+
Sbjct: 68 VNDN 71
>ref|NP_208341.1| (NC_000915) protein-export membrane protein (secD) [Helicobacter
pylori 26695]
sp|O26074|SECD_HELPY Protein-export membrane protein secD
pir||F64713 protein-export membrane protein - Helicobacter pylori (strain
26695)
gb|AAD08588.1| (AE000652) protein-export membrane protein (secD) [Helicobacter
pylori 26695]
Length = 503
Score = 61.2 bits (147), Expect = 2e-09
Identities = 33/68 (48%), Positives = 45/68 (65%), Gaps = 4/68 (5%)
Query: 60 LKAEANFFSVKLNDDTTAKLSKNYVAFKL----DELDQFGLAEPIVIQQGREEISAKLSG 115
+K EA F+SV L +L KN + + + LDQFGLAEP+VIQQG+EEIS +L G
Sbjct: 94 IKKEAGFYSVNLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEPVVIQQGKEEISVQLPG 153
Query: 116 AKTLKQRQ 123
KTL++ +
Sbjct: 154 IKTLEEER 161
>gb|AAL89762.1|AF484425_3 (AF484425) YajC [Bartonella henselae]
Length = 148
Score = 61.2 bits (147), Expect = 2e-09
Identities = 37/121 (30%), Positives = 67/121 (54%), Gaps = 9/121 (7%)
Query: 8 LTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLKA--EAN 65
L T +P +++F I YF I+RPQR Q KK +EM+ ++ +GD ++T GG+I +V K E+
Sbjct: 20 LVTFVPFILIFGIMYFFIIRPQRAQMKKRQEMLNAVRRGDTVITGGGVIGKVTKVYDESG 79
Query: 66 FFSVKLNDDTTAKLSKNYVAFKLDELDQFGLAEPIVIQQGREEISAKL-SGAKTLKQRQI 124
V++ D ++ ++ ++ D EPI ++ + K S AK +K+ +
Sbjct: 80 ELEVEICDGMRIRVIRSTLS------DVRVKGEPISEEKSKLNTKVKAPSKAKAVKKENM 133
Query: 125 T 125
+
Sbjct: 134 S 134
>ref|NP_245165.1| (NC_002663) YajC [Pasteurella multocida]
gb|AAK02312.1| (AE006057) YajC [Pasteurella multocida]
Length = 98
Score = 60.8 bits (146), Expect = 3e-09
Identities = 28/79 (35%), Positives = 50/79 (62%), Gaps = 2/79 (2%)
Query: 8 LTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLKA--EAN 65
++ L V+ LIFYF+I RPQ ++ K+HK+++ L KG +++ GGLI + K +++
Sbjct: 9 MSMLFIFVIFGLIFYFMIYRPQAKRNKEHKKLMSELAKGTEVLIAGGLIGRITKVSPDSD 68
Query: 66 FFSVKLNDDTTAKLSKNYV 84
+ LN+ T +++NYV
Sbjct: 69 SIIIALNETTEVTINRNYV 87
>ref|NP_273650.1| (NC_003112) conserved hypothetical protein [Neisseria
meningitidis MC58]
pir||G81178 conserved hypothetical protein NMB0606 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF41033.1| (AE002416) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 88
Score = 60.5 bits (145), Expect = 3e-09
Identities = 29/79 (36%), Positives = 50/79 (62%), Gaps = 2/79 (2%)
Query: 13 PLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLKAEANFFSVKLN 72
PLV++ ++FYFLI+RPQ+++ K H+ M+ +L GDK+V G +V + FF+V +
Sbjct: 10 PLVLIMVVFYFLIMRPQQKKFKAHQAMLAALKVGDKVVLAAGFKGKVTRVGEQFFTVDIG 69
Query: 73 DDT--TAKLSKNYVAFKLD 89
T ++ +N +A K+D
Sbjct: 70 QGTKIEVEVERNAIAAKVD 88
>ref|NP_239966.1| (NC_002528) hypothetical protein [Buchnera sp. APS]
sp|P57234|Y134_BUCAI Hypothetical protein BU134
dbj|BAB12852.1| (AP001118) hypothetical protein [Buchnera sp. APS]
Length = 111
Score = 60.5 bits (145), Expect = 3e-09
Identities = 25/71 (35%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 15 VVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLKAEAN-FFSVKLND 73
V+ LIFYF++ RPQ+++ K+HK +I SL +GD+++T GL+ + K N + ++LN+
Sbjct: 29 VIFLLIFYFMLFRPQQKKDKEHKNLINSLVQGDEVITTSGLLGRIKKITKNGYILLELNE 88
Query: 74 DTTAKLSKNYV 84
T + ++++
Sbjct: 89 TTEVFIKQDFI 99
>ref|NP_360530.1| (NC_003103) unknown [Rickettsia conorii]
gb|AAL03431.1| (AE008643) unknown [Rickettsia conorii]
Length = 141
Score = 60.1 bits (144), Expect = 4e-09
Identities = 30/112 (26%), Positives = 68/112 (59%), Gaps = 9/112 (8%)
Query: 8 LTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGL--IVEVLKAEAN 65
LT+L+P+V++F +FYFL++RPQ ++K+ ++++ + KG++++T G+ IV + N
Sbjct: 35 LTSLIPMVLIFAVFYFLLLRPQETRRKEREKLVSEVKKGEEVLTNSGIYGIVTKVSENDN 94
Query: 66 FFSVKLNDDTTAKLSKNYVAFKLDELDQFGLAEPIVIQQGREEISAKLSGAK 117
+++ D K+ K+ + +D + + +++ ++ + K+SGAK
Sbjct: 95 NIEIEIAKDVRIKVLKSAI------IDITSRTKEVAVKKENKK-NKKVSGAK 139
>ref|NP_252511.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||G83169 conserved hypothetical protein PA3822 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG07209.1|AE004799_15 (AE004799) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 112
Score = 60.1 bits (144), Expect = 4e-09
Identities = 29/75 (38%), Positives = 47/75 (62%)
Query: 14 LVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLKAEANFFSVKLND 73
LV +IFY +I RPQ ++ K+HK ++ +L KGD++VT GG+ +V K +F V+++D
Sbjct: 30 LVGFLVIFYLMIWRPQAKRAKEHKNLLGNLQKGDEVVTSGGIAGKVTKVADDFVVVEVSD 89
Query: 74 DTTAKLSKNYVAFKL 88
+ K K +A L
Sbjct: 90 NVELKFQKAAIAATL 104
>ref|NP_465054.1| (NC_003210) similar to unknown proteins [Listeria monocytogenes
EGD-e]
emb|CAC99607.1| (AL591979) similar to unknown proteins [Listeria monocytogenes]
Length = 109
Score = 60.1 bits (144), Expect = 4e-09
Identities = 26/56 (46%), Positives = 44/56 (78%), Gaps = 2/56 (3%)
Query: 8 LTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGL--IVEVLK 61
+ T +P++++ ++FYFL++RPQ+++QK+ + M SL KGDKI+T GGL IVE ++
Sbjct: 4 IVTFIPIILMIVLFYFLLIRPQQKRQKEVQNMQSSLAKGDKIITIGGLHGIVEAIE 59
>ref|NP_470900.1| (NC_003212) similar to unknown proteins [Listeria innocua]
emb|CAC96795.1| (AL596169) similar to unknown proteins [Listeria innocua]
Length = 110
Score = 60.1 bits (144), Expect = 4e-09
Identities = 26/56 (46%), Positives = 44/56 (78%), Gaps = 2/56 (3%)
Query: 8 LTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGL--IVEVLK 61
+ T +P++++ ++FYFL++RPQ+++QK+ + M SL KGDKI+T GGL IVE ++
Sbjct: 5 IVTFIPIILMIVLFYFLLIRPQQKRQKEVQNMQSSLAKGDKIITIGGLHGIVEAIE 60
>ref|NP_230391.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||A82285 conserved hypothetical protein VC0742 [imported] - Vibrio
cholerae (group O1 strain N16961)
gb|AAF93907.1| (AE004160) conserved hypothetical protein [Vibrio cholerae]
Length = 110
Score = 59.7 bits (143), Expect = 6e-09
Identities = 27/76 (35%), Positives = 52/76 (67%), Gaps = 2/76 (2%)
Query: 11 LLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLK-AEAN-FFS 68
++ L + +IFYF+I RPQ ++ K+HK ++ ++ KGD+++T GGL+ + K AE N + +
Sbjct: 23 IIMLAMFAVIFYFMIYRPQAKRVKEHKNLMAAMAKGDEVLTSGGLVGRITKIAEDNAYIT 82
Query: 69 VKLNDDTTAKLSKNYV 84
++LN + + K++V
Sbjct: 83 IELNTNNEVVIKKDFV 98
>ref|NP_660971.1| (NC_002932) conserved hypothetical protein [Chlorobium tepidum TLS]
gb|AAM71313.1| (AE012786) conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 117
Score = 59.3 bits (142), Expect = 7e-09
Identities = 25/77 (32%), Positives = 52/77 (67%), Gaps = 2/77 (2%)
Query: 11 LLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGL--IVEVLKAEANFFS 68
L+PLV++F++FYF ++RPQ+++QK+ + ++ + +GD++VT GG+ V ++ E
Sbjct: 26 LVPLVLIFVVFYFFMIRPQQKKQKERESLLNDIKRGDRVVTIGGIHGTVAGIETEKKTVL 85
Query: 69 VKLNDDTTAKLSKNYVA 85
V++ D+ K ++ +A
Sbjct: 86 VQVADNVKIKFERSAIA 102
>ref|NP_212785.1| (NC_001318) conserved hypothetical protein [Borrelia burgdorferi]
sp|O51595|Y651_BORBU Hypothetical protein BB0651
pir||B70181 conserved hypothetical protein BB0651 - Lyme disease spirochete
gb|AAC66994.1| (AE001166) conserved hypothetical protein [Borrelia burgdorferi]
Length = 105
Score = 59.3 bits (142), Expect = 7e-09
Identities = 32/83 (38%), Positives = 50/83 (59%)
Query: 8 LTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLKAEANFF 67
L +LL V + IF+FL++ PQR+++K KEMI++L KGDK++T GG+ V K
Sbjct: 21 LRSLLVFVPVIAIFWFLVISPQRKEEKNKKEMIKNLKKGDKVLTIGGIFGVVKKLGDTDV 80
Query: 68 SVKLNDDTTAKLSKNYVAFKLDE 90
++L+ + A KN + L E
Sbjct: 81 ILELSPNNEAVFIKNSIDKVLSE 103
>ref|NP_283606.1| (NC_003116) hypothetical protein NMA0811 [Neisseria meningitidis
Z2491]
pir||B81926 hypothetical protein NMA0811 [imported] - Neisseria meningitidis
(group A strain Z2491)
emb|CAB84093.1| (AL162754) hypothetical protein NMA0811 [Neisseria meningitidis
Z2491]
Length = 88
Score = 59.3 bits (142), Expect = 7e-09
Identities = 28/79 (35%), Positives = 50/79 (62%), Gaps = 2/79 (2%)
Query: 13 PLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLKAEANFFSVKLN 72
PLV++ ++FYFLI+RPQ+++ K H+ M+ +L GDK+V G +V + FF+V +
Sbjct: 10 PLVLIMVVFYFLIMRPQQKKFKAHQAMLAALKVGDKVVLAAGFKGKVTRVGEQFFTVDIG 69
Query: 73 DDT--TAKLSKNYVAFKLD 89
T ++ +N ++ K+D
Sbjct: 70 QGTKIEVEVERNAISAKVD 88
>gb|AAF80361.1|AF157831_3 (AF157831) YajC homolog [Bartonella bacilliformis]
Length = 152
Score = 58.9 bits (141), Expect = 1e-08
Identities = 29/70 (41%), Positives = 47/70 (66%), Gaps = 2/70 (2%)
Query: 18 FLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLKA--EANFFSVKLNDDT 75
F+I YFLI+RPQR Q KK +EM+ ++ +GD IVT GG+I +V+K E V++ +D
Sbjct: 25 FVIMYFLIIRPQRVQMKKRQEMLNAVRRGDVIVTGGGIIGKVIKVHDEIGELEVEIGEDM 84
Query: 76 TAKLSKNYVA 85
++ ++ +A
Sbjct: 85 HIRILRSTLA 94
>ref|NP_228668.1| (NC_000853) hypothetical protein [Thermotoga maritima]
sp|Q9WZW3|Y859_THEMA Hypothetical protein TM0859
pir||D72325 hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD35941.1|AE001752_8 (AE001752) hypothetical protein [Thermotoga maritima]
Length = 116
Score = 58.5 bits (140), Expect = 1e-08
Identities = 25/83 (30%), Positives = 51/83 (61%)
Query: 11 LLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLKAEANFFSVK 70
L L+ IFYF+I+ PQR+++K+ ++MI + +GD +VT GG++ +V+ + + +K
Sbjct: 29 LFMLIFFIAIFYFMIILPQRRREKQFQQMISQMKRGDTVVTIGGIVGKVIDIKKDTVKIK 88
Query: 71 LNDDTTAKLSKNYVAFKLDELDQ 93
+ T +++K ++ + E Q
Sbjct: 89 TANSTELEITKRAISTVIKERSQ 111
>ref|NP_660483.1| (NC_004061) hypothetical 11.9 kD protein in tgt-secD [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
gb|AAM67694.1| (AE014088) hypothetical 11.9 kD protein in tgt-secD [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
Length = 110
Score = 57.8 bits (138), Expect = 2e-08
Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 14 LVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLKAEAN-FFSVKLN 72
LV LIFYF++ RPQ+++ K+HK ++ S+ GD+++T G + V K N + ++LN
Sbjct: 27 LVTFILIFYFMLFRPQQKKDKEHKNLMNSIAPGDEVMTTSGFLGRVKKVTENGYVLLQLN 86
Query: 73 DDTTAKLSKNYVAFKL 88
+ T + K+++ L
Sbjct: 87 NTTEIFIKKDFIVSSL 102
>ref|NP_622811.1| (NC_003869) Preprotein translocase subunit YajC
[Thermoanaerobacter tengcongensis]
gb|AAM24415.1| (AE013080) Preprotein translocase subunit YajC
[Thermoanaerobacter tengcongensis]
Length = 101
Score = 57.0 bits (136), Expect = 4e-08
Identities = 23/64 (35%), Positives = 44/64 (67%)
Query: 11 LLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLKAEANFFSVK 70
L+ +L IFYFL++ PQ+++QKK +EM++SL GD+I+T+ G ++L + + +++
Sbjct: 8 LIQFAILIAIFYFLLILPQQRRQKKEREMLDSLRPGDEIITKSGFYGKILNIKDDVITLE 67
Query: 71 LNDD 74
+ D
Sbjct: 68 MGAD 71
>ref|NP_220954.1| (NC_000963) unknown [Rickettsia prowazekii]
sp|Q9ZCW9|Y585_RICPR Hypothetical protein RP585
pir||D71663 hypothetical protein RP585 - Rickettsia prowazekii
emb|CAA15030.1| (AJ235272) unknown [Rickettsia prowazekii]
Length = 142
Score = 55.5 bits (132), Expect = 1e-07
Identities = 22/79 (27%), Positives = 51/79 (63%), Gaps = 2/79 (2%)
Query: 8 LTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGL--IVEVLKAEAN 65
LT+L+P++++F +FYFL++RPQ +++K+ ++++ + KG++++ G+ IV + N
Sbjct: 35 LTSLIPMILIFAVFYFLLLRPQEKRRKEREKLVSGVKKGEEVLINSGIYGIVTKVSENDN 94
Query: 66 FFSVKLNDDTTAKLSKNYV 84
+++ D K K+ +
Sbjct: 95 NIEIEIAKDVRIKAIKSAI 113
>ref|NP_354563.1| (NC_003062) AGR_C_2879p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_532251.1| (NC_003304) preprotein tranlocase protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK87348.1| (AE008079) AGR_C_2879p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL42567.1| (AE009114) preprotein tranlocase protein [Agrobacterium tumefaciens
str. C58 (U. Washington)]
Length = 115
Score = 53.9 bits (128), Expect = 3e-07
Identities = 25/79 (31%), Positives = 47/79 (58%), Gaps = 1/79 (1%)
Query: 8 LTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLKA-EANF 66
L L L +++YF ++RPQR Q KK +E + S+ +GD++V GG++ +V K + N
Sbjct: 22 LEMLFLFAPLMVVWYFFLIRPQRAQMKKRQETLTSIRRGDQVVLGGGIVGKVTKVIDDNE 81
Query: 67 FSVKLNDDTTAKLSKNYVA 85
V++ + + ++ Y+A
Sbjct: 82 LEVEIAEGVKIRAARAYIA 100
>ref|NP_297517.1| (NC_002488) preprotein translocase YajC subunit [Xylella fastidiosa
9a5c]
pir||H82831 preprotein translocase YajC subunit XF0224 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF83037.1|AE003876_2 (AE003876) preprotein translocase YajC subunit [Xylella fastidiosa
9a5c]
Length = 120
Score = 53.1 bits (126), Expect = 5e-07
Identities = 23/71 (32%), Positives = 45/71 (62%)
Query: 15 VVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLKAEANFFSVKLNDD 74
V+L + YF I+RPQ ++QK++K M++ L GD+++T GG+ V F +V++ ++
Sbjct: 38 VILIAVMYFSIIRPQMKRQKEYKSMMDHLGCGDEVITAGGIAGVVSVIGDEFVTVEIAEN 97
Query: 75 TTAKLSKNYVA 85
++ K+ +A
Sbjct: 98 VRVRVQKSAIA 108
>ref|NP_372162.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_374751.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
ref|NP_646405.1| (NC_003923) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB42730.1| (AP003134) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB57800.1| (AP003363) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
dbj|BAB95453.1| (AP004827) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 86
Score = 51.6 bits (122), Expect = 2e-06
Identities = 25/72 (34%), Positives = 45/72 (61%), Gaps = 10/72 (13%)
Query: 11 LLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLKAEANFFSVK 70
L+ +VV+F + YFL++RPQ+++ K+H+E+I ++ G +I T GG+ +VK
Sbjct: 6 LIYIVVIFAVMYFLMIRPQQKRAKQHRELINNIQSGQRITTIGGI----------KGTVK 55
Query: 71 LNDDTTAKLSKN 82
D+TT ++ N
Sbjct: 56 AVDETTVVITVN 67
>ref|NP_658444.1| (NC_003995) DUF219, Uncharacterized secreted proteins, YajC
family COG1862 [Bacillus anthracis A2012] [Bacillus
anthracis str. A2012]
Length = 86
Score = 51.2 bits (121), Expect = 2e-06
Identities = 23/48 (47%), Positives = 34/48 (69%)
Query: 8 LTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGL 55
+ ++ +V +F IFYFL++RPQ+++QK +M L KGD IVT GGL
Sbjct: 5 MMNIVMIVAMFAIFYFLLIRPQQKRQKAVAQMQSELKKGDAIVTIGGL 52
>sp|P58007|Y40A_TREPA Hypothetical protein TP0409.1
Length = 135
Score = 48.1 bits (113), Expect = 2e-05
Identities = 23/74 (31%), Positives = 45/74 (60%)
Query: 12 LPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLKAEANFFSVKL 71
L + V+ LIFY + P ++QK+ + +I+++ KGD +VT GG+ V + +K+
Sbjct: 30 LAIGVVCLIFYLFVFAPNLREQKRTQALIKNIKKGDPVVTIGGIHGVVSVVREHSLVIKV 89
Query: 72 NDDTTAKLSKNYVA 85
N+ T ++S++ +A
Sbjct: 90 NEHGTLEVSRSAIA 103
>ref|NP_604232.1| (NC_003454) Protein translocase subunit YajC [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gb|AAL95531.1| (AE010638) Protein translocase subunit YajC [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 94
Score = 45.4 bits (106), Expect = 1e-04
Identities = 18/72 (25%), Positives = 43/72 (59%)
Query: 14 LVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLKAEANFFSVKLND 73
+V+ IFYFLI+RP +++Q++ + ++ SL +G +++T GG+ + ++ ++++
Sbjct: 15 IVLWIAIFYFLIIRPNKKKQQQQQNLLNSLKEGTEVITIGGIKGTIAFVGEDYVEIRVDK 74
Query: 74 DTTAKLSKNYVA 85
K+ +A
Sbjct: 75 GVKLTFRKSAIA 86
>ref|NP_348898.1| (NC_003030) Uncharacterized secreted protein, YajC family
[Clostridium acetobutylicum]
gb|AAK80238.1|AE007729_5 (AE007729) Uncharacterized secreted protein, YajC family
[Clostridium acetobutylicum]
Length = 94
Score = 43.9 bits (102), Expect = 3e-04
Identities = 22/77 (28%), Positives = 41/77 (52%), Gaps = 1/77 (1%)
Query: 10 TLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVLKAEANFFSV 69
T+L +V L +FY + P R ++KK +M+ + DK+VT GG++ ++ + F +
Sbjct: 7 TILYVVFLLGMFYVAMYIPDRAKKKKFNKMLSEMRVNDKVVTTGGIMGQITNIQEQFVII 66
Query: 70 KLN-DDTTAKLSKNYVA 85
+ D K+ K +A
Sbjct: 67 QTGPDKVKIKIKKEAIA 83
>dbj|BAA11328.1| (D78257) ORF11 [Enterococcus faecalis]
Length = 82
Score = 40.4 bits (93), Expect = 0.004
Identities = 16/45 (35%), Positives = 31/45 (68%)
Query: 11 LLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGL 55
+L ++++ + YF + R Q++QQK+ ++ + +L GD +VT GGL
Sbjct: 4 MLIMLLVIVAMYFYLFRTQKKQQKERQDFLNNLQPGDAVVTIGGL 48
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.138 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,311,681
Number of Sequences: 1026957
Number of extensions: 2220838
Number of successful extensions: 8981
Number of sequences better than 1.0e-02: 48
Number of HSP's better than 0.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8925
Number of HSP's gapped (non-prelim): 48
length of query: 127
length of database: 324,149,939
effective HSP length: 103
effective length of query: 24
effective length of database: 218,373,368
effective search space: 5240960832
effective search space used: 5240960832
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 90 (39.3 bits)