BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644787|ref|NP_206957.1| hypothetical protein
[Helicobacter pylori 26695]
(318 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206957.1| (NC_000915) hypothetical protein [Helicoba... 622 e-177
ref|NP_222867.1| (NC_000921) putative [Helicobacter pylori ... 604 e-172
emb|CAA72361.1| (Y11648) wlaM [Campylobacter jejuni] 204 1e-51
ref|NP_282267.1| (NC_002163) putative integral membrane pro... 203 2e-51
gb|AAD51389.1|AF108897_7 (AF108897) PglG [Campylobacter jej... 201 9e-51
ref|NP_644368.1| (NC_003919) conserved hypothetical protein... 65 1e-09
ref|NP_639320.1| (NC_003902) conserved hypothetical protein... 63 4e-09
>ref|NP_206957.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64539 hypothetical protein HP0158 - Helicobacter pylori (strain 26695)
gb|AAD07228.1| (AE000536) H. pylori predicted coding region HP0158 [Helicobacter
pylori 26695]
Length = 318
Score = 622 bits (1604), Expect = e-177
Identities = 318/318 (100%), Positives = 318/318 (100%)
Query: 1 MLSRDIVQYSKIRTELYAYLTYLFSHNIRNHLPEITLDYLNKQIRKMHAEIKMAKNFFVL 60
MLSRDIVQYSKIRTELYAYLTYLFSHNIRNHLPEITLDYLNKQIRKMHAEIKMAKNFFVL
Sbjct: 1 MLSRDIVQYSKIRTELYAYLTYLFSHNIRNHLPEITLDYLNKQIRKMHAEIKMAKNFFVL 60
Query: 61 DAKGMLILKPSQLKEQGHKEGILEHDLTEGIELESHASFSDKYYFYQAVSEKRCILTDPY 120
DAKGMLILKPSQLKEQGHKEGILEHDLTEGIELESHASFSDKYYFYQAVSEKRCILTDPY
Sbjct: 61 DAKGMLILKPSQLKEQGHKEGILEHDLTEGIELESHASFSDKYYFYQAVSEKRCILTDPY 120
Query: 121 PSKKGNHLVVSASYPVYDQNNDLAFVVCLQIPLRVAIEISSPSKYFRTFSEGSMVMYFMI 180
PSKKGNHLVVSASYPVYDQNNDLAFVVCLQIPLRVAIEISSPSKYFRTFSEGSMVMYFMI
Sbjct: 121 PSKKGNHLVVSASYPVYDQNNDLAFVVCLQIPLRVAIEISSPSKYFRTFSEGSMVMYFMI 180
Query: 181 SIMLTLVSLLLFVKCISSFWTAIVNFSSFDIKEVFHPIVLLTLALATFDLVKAIFEEEVL 240
SIMLTLVSLLLFVKCISSFWTAIVNFSSFDIKEVFHPIVLLTLALATFDLVKAIFEEEVL
Sbjct: 181 SIMLTLVSLLLFVKCISSFWTAIVNFSSFDIKEVFHPIVLLTLALATFDLVKAIFEEEVL 240
Query: 241 GKNSGDNHHAIHRTMIRFLGSIIIALAIEALMLVFKFSVSEPDKITYAVYLAVGVAVLLI 300
GKNSGDNHHAIHRTMIRFLGSIIIALAIEALMLVFKFSVSEPDKITYAVYLAVGVAVLLI
Sbjct: 241 GKNSGDNHHAIHRTMIRFLGSIIIALAIEALMLVFKFSVSEPDKITYAVYLAVGVAVLLI 300
Query: 301 SLAIYVKFAYSVLPKRER 318
SLAIYVKFAYSVLPKRER
Sbjct: 301 SLAIYVKFAYSVLPKRER 318
>ref|NP_222867.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71968 hypothetical protein jhp0146 - Helicobacter pylori (strain J99)
gb|AAD05727.1| (AE001453) putative [Helicobacter pylori J99]
Length = 318
Score = 604 bits (1557), Expect = e-172
Identities = 306/318 (96%), Positives = 314/318 (98%)
Query: 1 MLSRDIVQYSKIRTELYAYLTYLFSHNIRNHLPEITLDYLNKQIRKMHAEIKMAKNFFVL 60
MLSRDIVQYSKIRTELYAYLTYLFSHNIRNHLPEITLDYLN+QI KM AEIKMAK+FFVL
Sbjct: 1 MLSRDIVQYSKIRTELYAYLTYLFSHNIRNHLPEITLDYLNRQISKMQAEIKMAKSFFVL 60
Query: 61 DAKGMLILKPSQLKEQGHKEGILEHDLTEGIELESHASFSDKYYFYQAVSEKRCILTDPY 120
DAKGML+LKPSQ KEQGHKEG+LEHDLTEGIELESH SFSDKYYFYQAV+EKRCILTDPY
Sbjct: 61 DAKGMLMLKPSQFKEQGHKEGLLEHDLTEGIELESHVSFSDKYYFYQAVNEKRCILTDPY 120
Query: 121 PSKKGNHLVVSASYPVYDQNNDLAFVVCLQIPLRVAIEISSPSKYFRTFSEGSMVMYFMI 180
PSKKGNHLVVSASYPVYDQNNDLAFVVCLQIPLRVAIEISSPSKYF+TFSEGSMVMYFMI
Sbjct: 121 PSKKGNHLVVSASYPVYDQNNDLAFVVCLQIPLRVAIEISSPSKYFKTFSEGSMVMYFMI 180
Query: 181 SIMLTLVSLLLFVKCISSFWTAIVNFSSFDIKEVFHPIVLLTLALATFDLVKAIFEEEVL 240
SIMLTLVSLLLFVKCISSFWTAIV+FSSFDIKEVFHPIVLLTLALATFDLVKAIFEEEVL
Sbjct: 181 SIMLTLVSLLLFVKCISSFWTAIVHFSSFDIKEVFHPIVLLTLALATFDLVKAIFEEEVL 240
Query: 241 GKNSGDNHHAIHRTMIRFLGSIIIALAIEALMLVFKFSVSEPDKITYAVYLAVGVAVLLI 300
GKNSGDNHHAIHRTMIRFLGSIIIALAIEALMLVFKFSVSEPDKITYAVYLA+GVAVLLI
Sbjct: 241 GKNSGDNHHAIHRTMIRFLGSIIIALAIEALMLVFKFSVSEPDKITYAVYLAIGVAVLLI 300
Query: 301 SLAIYVKFAYSVLPKRER 318
SLAIYVKFAYSVLPKRER
Sbjct: 301 SLAIYVKFAYSVLPKRER 318
>emb|CAA72361.1| (Y11648) wlaM [Campylobacter jejuni]
Length = 297
Score = 204 bits (519), Expect = 1e-51
Identities = 115/306 (37%), Positives = 183/306 (59%), Gaps = 19/306 (6%)
Query: 1 MLSRDIVQYSKIRTELYAYLTYLFSHNIRNHLPEITLDYLNKQIRKMHAEIKMAKNFFVL 60
M +DI ++ R AY++Y+ + N+ N LP+I L+ + + K+ E+ + ++L
Sbjct: 1 MYIKDIQRFEDNRYRARAYMSYILTRNLPNKLPDIHLETIKTALDKIAHEVVVFDALYIL 60
Query: 61 DAKGMLILKPSQLKEQGHKEGILEHDLTEGIELESHASFSDKYYFYQAVSEKRCILTDPY 120
D GM I L + H++ +G + S + YFY+AV KRC+L+DPY
Sbjct: 61 DISGMQIENAISLNKA--------HEIGQGEDR------STRSYFYRAVKLKRCVLSDPY 106
Query: 121 PSKKGNHLVVSASYPVYDQNNDLAFVVCLQIPLRVAIEISSPSKYFRTFSEGSMVMYFMI 180
PS N L V+AS P+YD N+L FVVC+ I L ++I K+ F++ S ++YF
Sbjct: 107 PSVLNNELCVTASIPIYDDKNNLLFVVCIDIKLEDILKIIQAGKFEFVFTQFSRLVYFCF 166
Query: 181 SIMLTLVSLLLFVKCISSFWTAIVNFSSFDIKEVFHPIVLLTLALATFDLVKAIFEEEVL 240
+++L +++ LF K F++ N + I+ +F + +TLALA FDL K + E+EVL
Sbjct: 167 ALVLFVITCFLFQK---GFFSLFDN-QAIGIEHMFESTIAITLALAIFDLAKTLIEQEVL 222
Query: 241 GKNSGDNHHAIHRTMIRFLGSIIIALAIEALMLVFKFSVSEPDKITYAVYLAVGVAVLLI 300
G+ + I +TM+RFLGSIIIALAIEALMLVFK ++ + ++ YA+YL GV++LL+
Sbjct: 223 GRTKKE-EGGIQKTMVRFLGSIIIALAIEALMLVFKLAIGDLSQMIYAIYLIGGVSLLLL 281
Query: 301 SLAIYV 306
L++Y+
Sbjct: 282 GLSVYL 287
>ref|NP_282267.1| (NC_002163) putative integral membrane protein [Campylobacter
jejuni]
pir||B81316 probable integral membrane protein Cj1119c [imported] -
Campylobacter jejuni (strain NCTC 11168)
emb|CAB73374.1| (AL139077) putative integral membrane protein [Campylobacter
jejuni]
Length = 297
Score = 203 bits (516), Expect = 2e-51
Identities = 114/306 (37%), Positives = 183/306 (59%), Gaps = 19/306 (6%)
Query: 1 MLSRDIVQYSKIRTELYAYLTYLFSHNIRNHLPEITLDYLNKQIRKMHAEIKMAKNFFVL 60
M +DI ++ R AY++Y+ + N+ N LP+I L+ + + K+ E+ + ++L
Sbjct: 1 MYIKDIQRFEDNRYRARAYMSYILTRNLPNKLPDIHLETIKTALDKIAHEVVVFDALYIL 60
Query: 61 DAKGMLILKPSQLKEQGHKEGILEHDLTEGIELESHASFSDKYYFYQAVSEKRCILTDPY 120
D GM I L + H++ +G + S + YFY+AV +RC+L+DPY
Sbjct: 61 DISGMQIENAISLNKA--------HEIGQGEDR------STRSYFYRAVKLRRCVLSDPY 106
Query: 121 PSKKGNHLVVSASYPVYDQNNDLAFVVCLQIPLRVAIEISSPSKYFRTFSEGSMVMYFMI 180
PS N L V+AS P+YD N+L FVVC+ I L ++I K+ F++ S ++YF
Sbjct: 107 PSVLNNELCVTASMPIYDDKNNLLFVVCIDIKLEDILKIIQAGKFEFVFTQFSRLVYFCF 166
Query: 181 SIMLTLVSLLLFVKCISSFWTAIVNFSSFDIKEVFHPIVLLTLALATFDLVKAIFEEEVL 240
+++L +++ LF K F++ N + I+ +F + +TLALA FDL K + E+EVL
Sbjct: 167 ALVLFVITCFLFQK---GFFSLFDN-QAIGIEHMFESTIAITLALAIFDLAKTLIEQEVL 222
Query: 241 GKNSGDNHHAIHRTMIRFLGSIIIALAIEALMLVFKFSVSEPDKITYAVYLAVGVAVLLI 300
G+ + I +TM+RFLGSIIIALAIEALMLVFK ++ + ++ YA+YL GV++LL+
Sbjct: 223 GRTKKE-EGGIQKTMVRFLGSIIIALAIEALMLVFKLAIGDLSQMIYAIYLIGGVSLLLL 281
Query: 301 SLAIYV 306
L++Y+
Sbjct: 282 GLSVYL 287
>gb|AAD51389.1|AF108897_7 (AF108897) PglG [Campylobacter jejuni]
Length = 297
Score = 201 bits (511), Expect = 9e-51
Identities = 114/306 (37%), Positives = 181/306 (58%), Gaps = 19/306 (6%)
Query: 1 MLSRDIVQYSKIRTELYAYLTYLFSHNIRNHLPEITLDYLNKQIRKMHAEIKMAKNFFVL 60
M +DI ++ R AY++Y+ + N+ N LP+I L+ + + K+ E+ + ++L
Sbjct: 1 MYIKDIHRFEDNRYRARAYMSYILTRNLPNKLPDIHLETIKTALDKIAHEVVVFDALYIL 60
Query: 61 DAKGMLILKPSQLKEQGHKEGILEHDLTEGIELESHASFSDKYYFYQAVSEKRCILTDPY 120
D GM I E + L + E+ S + YFY+AV +RC+L+DPY
Sbjct: 61 DISGMQI------------ENAIS--LNKAHEIGQDEDRSTRSYFYRAVKLRRCVLSDPY 106
Query: 121 PSKKGNHLVVSASYPVYDQNNDLAFVVCLQIPLRVAIEISSPSKYFRTFSEGSMVMYFMI 180
PS N L V+AS P+YD N+L FVVC+ I L ++I K+ F++ S ++YF
Sbjct: 107 PSVLNNELCVTASMPIYDDKNNLLFVVCIDIKLEDILKIIQAGKFEFVFTQFSRLVYFCF 166
Query: 181 SIMLTLVSLLLFVKCISSFWTAIVNFSSFDIKEVFHPIVLLTLALATFDLVKAIFEEEVL 240
+++L +++ LF K F++ N + I+ +F + +TLALA FDL K + E+EVL
Sbjct: 167 ALVLFVITCFLFQK---GFFSLFDN-QAIGIEHMFESTIAITLALAIFDLAKTLIEQEVL 222
Query: 241 GKNSGDNHHAIHRTMIRFLGSIIIALAIEALMLVFKFSVSEPDKITYAVYLAVGVAVLLI 300
G+ + I +TM+RFLGSIIIALAIEALMLVFK ++ + ++ YA+YL GV++LL+
Sbjct: 223 GRTKKE-EGGIQKTMVRFLGSIIIALAIEALMLVFKLAIGDLSQMVYAIYLIGGVSLLLL 281
Query: 301 SLAIYV 306
L++Y+
Sbjct: 282 GLSVYL 287
>ref|NP_644368.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM38904.1| (AE012055) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 182
Score = 64.7 bits (156), Expect = 1e-09
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 4/135 (2%)
Query: 177 YFMISIMLTLVSLLLFVKCISSFWTAIVNFSSFDIKEVFHPIV----LLTLALATFDLVK 232
+F+I L + L W +++ F+ ++ LLT+AL T +L +
Sbjct: 23 HFVILAFFVLCAAGLVTMAGLELWHGFTPGGDMVVRDRFNVVLEAVGLLTVALVTLELGQ 82
Query: 233 AIFEEEVLGKNSGDNHHAIHRTMIRFLGSIIIALAIEALMLVFKFSVSEPDKITYAVYLA 292
IFEEE+L + R + RF I+IALAIE L+ +F+ ++P K+ YA +
Sbjct: 83 TIFEEEILRDVKVSGPTRVRRYLSRFFVVIVIALAIETLVSIFELMHADPAKLPYAAAVG 142
Query: 293 VGVAVLLISLAIYVK 307
A+LLI+ ++VK
Sbjct: 143 SCAALLLIAWGVFVK 157
>ref|NP_639320.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM43202.1| (AE012518) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 182
Score = 63.2 bits (152), Expect = 4e-09
Identities = 36/94 (38%), Positives = 53/94 (56%)
Query: 214 VFHPIVLLTLALATFDLVKAIFEEEVLGKNSGDNHHAIHRTMIRFLGSIIIALAIEALML 273
V I LLT+AL T +L + IFEEE+L + R + RF I+IALAIE L+
Sbjct: 64 VLEAIGLLTVALVTLELGQTIFEEEILRDVKVSGPTRVRRYLSRFFVVIVIALAIETLVS 123
Query: 274 VFKFSVSEPDKITYAVYLAVGVAVLLISLAIYVK 307
+F+ +P K+ YA + +LLI+ ++VK
Sbjct: 124 IFELMHDDPAKLPYAASVGFCAGLLLIAWGVFVK 157
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.326 0.140 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,301,852
Number of Sequences: 1026957
Number of extensions: 7147894
Number of successful extensions: 23356
Number of sequences better than 1.0e-02: 7
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23336
Number of HSP's gapped (non-prelim): 7
length of query: 318
length of database: 324,149,939
effective HSP length: 121
effective length of query: 197
effective length of database: 199,888,142
effective search space: 39377963974
effective search space used: 39377963974
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 97 (42.0 bits)