BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646173|ref|NP_208357.1| hypothetical protein
[Helicobacter pylori 26695]
         (147 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_208357.1|  (NC_000915) hypothetical protein [Helicoba...   299  6e-81
ref|NP_224192.1|  (NC_000921) putative [Helicobacter pylori ...   278  9e-75

>ref|NP_208357.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||F64715 hypothetical protein HP1566 - Helicobacter pylori (strain 26695)
 gb|AAD08610.1| (AE000654) H. pylori predicted coding region HP1566 [Helicobacter
           pylori 26695]
          Length = 147

 Score =  299 bits (765), Expect = 6e-81
 Identities = 147/147 (100%), Positives = 147/147 (100%)

Query: 1   MLSLKQDSFFFLCLGILGFYFYSLLRDLMPFLPPMIGFLFLFYAKKYDHFLPSLSVFGCL 60
           MLSLKQDSFFFLCLGILGFYFYSLLRDLMPFLPPMIGFLFLFYAKKYDHFLPSLSVFGCL
Sbjct: 1   MLSLKQDSFFFLCLGILGFYFYSLLRDLMPFLPPMIGFLFLFYAKKYDHFLPSLSVFGCL 60

Query: 61  FWFESMHLKTLGVLALLFLIYHQIAYKNSLKLFNDGFLFKTLHVFLVYYLYLSRFFSMSL 120
           FWFESMHLKTLGVLALLFLIYHQIAYKNSLKLFNDGFLFKTLHVFLVYYLYLSRFFSMSL
Sbjct: 61  FWFESMHLKTLGVLALLFLIYHQIAYKNSLKLFNDGFLFKTLHVFLVYYLYLSRFFSMSL 120

Query: 121 SLKILGFLALFALIESALWGLYEKSSL 147
           SLKILGFLALFALIESALWGLYEKSSL
Sbjct: 121 SLKILGFLALFALIESALWGLYEKSSL 147



>ref|NP_224192.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||C71802 hypothetical protein jhp1474 - Helicobacter pylori (strain J99)
 gb|AAD07058.1| (AE001569) putative [Helicobacter pylori J99]
          Length = 147

 Score =  278 bits (712), Expect = 9e-75
 Identities = 135/147 (91%), Positives = 137/147 (92%)

Query: 1   MLSLKQDSFFFLCLGILGFYFYSLLRDLMPFLPPMIGFLFLFYAKKYDHFLPSLSVFGCL 60
           MLSLKQDSFFFLCLGI GFYFYSLLRDLMPFLPPM+GFLFLFYAKKYDHFLPSLSVFGCL
Sbjct: 1   MLSLKQDSFFFLCLGIFGFYFYSLLRDLMPFLPPMLGFLFLFYAKKYDHFLPSLSVFGCL 60

Query: 61  FWFESMHLKTLGVLALLFLIYHQIAYKNSLKLFNDGFLFKTLHVFLVYYLYLSRFFSMSL 120
           FWFESMHLKTLGVLALLFLIYHQI YKNSLK FNDGFLFKTLH FLVYYLYLS FFS+SL
Sbjct: 61  FWFESMHLKTLGVLALLFLIYHQIVYKNSLKFFNDGFLFKTLHAFLVYYLYLSCFFSVSL 120

Query: 121 SLKILGFLALFALIESALWGLYEKSSL 147
            LK LG  ALFALIE ALWGLYEKSSL
Sbjct: 121 GLKTLGLFALFALIEGALWGLYEKSSL 147



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.338    0.153    0.482 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,372,607
Number of Sequences: 1026957
Number of extensions: 3464828
Number of successful extensions: 15867
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15864
Number of HSP's gapped (non-prelim): 2
length of query: 147
length of database: 324,149,939
effective HSP length: 109
effective length of query: 38
effective length of database: 212,211,626
effective search space: 8064041788
effective search space used: 8064041788
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 91 (39.7 bits)