BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646175|ref|NP_208359.1| hypothetical protein
[Helicobacter pylori 26695]
(183 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208359.1| (NC_000915) hypothetical protein [Helicoba... 369 e-102
ref|NP_224194.1| (NC_000921) putative [Helicobacter pylori ... 355 1e-97
ref|NP_281832.1| (NC_002163) hypothetical protein Cj0649 [C... 89 3e-17
ref|NP_214491.1| (NC_000918) putative protein [Aquifex aeol... 40 0.010
>ref|NP_208359.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64715 hypothetical protein HP1568 - Helicobacter pylori (strain 26695)
gb|AAD08611.1| (AE000654) H. pylori predicted coding region HP1568 [Helicobacter
pylori 26695]
Length = 183
Score = 369 bits (947), Expect = e-102
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MRWWCFLVCCFGILSVMDAKKLENKNLKKERELLEITGNQFVANDKTKTAVIQGNVQIKK 60
MRWWCFLVCCFGILSVMDAKKLENKNLKKERELLEITGNQFVANDKTKTAVIQGNVQIKK
Sbjct: 1 MRWWCFLVCCFGILSVMDAKKLENKNLKKERELLEITGNQFVANDKTKTAVIQGNVQIKK 60
Query: 61 GKDRLFADKVSVFLNDKRKPERYEATGNTHFNIFTEDNREISGSADKLIYNALNGEYKLL 120
GKDRLFADKVSVFLNDKRKPERYEATGNTHFNIFTEDNREISGSADKLIYNALNGEYKLL
Sbjct: 61 GKDRLFADKVSVFLNDKRKPERYEATGNTHFNIFTEDNREISGSADKLIYNALNGEYKLL 120
Query: 121 QNAVVREVGKSNVITGDEIILNKTKGYADVLGSAKRPAKFVFDMEDINEENRKAKLKKKG 180
QNAVVREVGKSNVITGDEIILNKTKGYADVLGSAKRPAKFVFDMEDINEENRKAKLKKKG
Sbjct: 121 QNAVVREVGKSNVITGDEIILNKTKGYADVLGSAKRPAKFVFDMEDINEENRKAKLKKKG 180
Query: 181 EKP 183
EKP
Sbjct: 181 EKP 183
>ref|NP_224194.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71802 hypothetical protein jhp1476 - Helicobacter pylori (strain J99)
gb|AAD07048.1| (AE001569) putative [Helicobacter pylori J99]
Length = 185
Score = 355 bits (911), Expect = 1e-97
Identities = 176/182 (96%), Positives = 177/182 (96%)
Query: 1 MRWWCFLVCCFGILSVMDAKKLENKNLKKERELLEITGNQFVANDKTKTAVIQGNVQIKK 60
MRWWCFLVCC +LSVMDAKKLENK LKKERELLEITGNQFVANDKTKTAVIQGNVQIKK
Sbjct: 1 MRWWCFLVCCLSVLSVMDAKKLENKGLKKERELLEITGNQFVANDKTKTAVIQGNVQIKK 60
Query: 61 GKDRLFADKVSVFLNDKRKPERYEATGNTHFNIFTEDNREISGSADKLIYNALNGEYKLL 120
GKDRLFADKVSVFLNDKRKPERYEATGNTHFNIFTEDNREISGS DKLIYNALNGEYKLL
Sbjct: 61 GKDRLFADKVSVFLNDKRKPERYEATGNTHFNIFTEDNREISGSTDKLIYNALNGEYKLL 120
Query: 121 QNAVVREVGKSNVITGDEIILNKTKGYADVLGSAKRPAKFVFDMEDINEENRKAKLKKKG 180
QNAVVREVGKSNVITGDEIILNKTKGYADVLGSAKRPAKFVFDMEDINEENRKAKLKKKG
Sbjct: 121 QNAVVREVGKSNVITGDEIILNKTKGYADVLGSAKRPAKFVFDMEDINEENRKAKLKKKG 180
Query: 181 EK 182
K
Sbjct: 181 AK 182
>ref|NP_281832.1| (NC_002163) hypothetical protein Cj0649 [Campylobacter jejuni]
pir||H81413 hypothetical protein Cj0649 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB75285.1| (AL139075) hypothetical protein Cj0649 [Campylobacter jejuni]
Length = 153
Score = 88.6 bits (218), Expect = 3e-17
Identities = 42/133 (31%), Positives = 78/133 (58%), Gaps = 1/133 (0%)
Query: 34 LEITGNQFVANDKTKTAVIQGNVQIKKGKDRLFADKVSVFLNDKRKPERYEATGNTHFNI 93
+E+ F +++ +++ GNV++ +G D L ++K+ ++ + RKP RYEA N F I
Sbjct: 21 IEVKALNFYSDENKGESILSGNVEVIRGDDILNSEKLIIYTDKNRKPIRYEAMQNARFKI 80
Query: 94 FTEDNREISGSADKLIYNALNGEYKLLQNAVVREVGKSNVITGDEIILNKTKGYADVLGS 153
+ + GS DK IYN + Y++ +A + E+G + + GD+II+++ V
Sbjct: 81 VLK-GKTYKGSGDKFIYNVIKDTYEINGHAYINELGSNQKLFGDKIIVDRKANIYRVESK 139
Query: 154 AKRPAKFVFDMED 166
++PA+FVFD++D
Sbjct: 140 DQKPARFVFDLKD 152
>ref|NP_214491.1| (NC_000918) putative protein [Aquifex aeolicus]
pir||F70486 hypothetical protein aq_2173 - Aquifex aeolicus
gb|AAC07891.1| (AE000776) putative protein [Aquifex aeolicus]
Length = 144
Score = 40.4 bits (93), Expect = 0.010
Identities = 32/106 (30%), Positives = 50/106 (46%), Gaps = 7/106 (6%)
Query: 51 VIQGNVQIKKGKDRLFADKVSVFLNDKRKPERYEATGNTHFNIFTEDNREISGSADKLIY 110
+ +GNV + + L AD+V + L+ + KP + A GN F E+ R+ A+ Y
Sbjct: 36 IYKGNVILHRDSSTLKADEVVILLDKENKPYKLIAKGNVKFR---ENGRK--AEAEFAEY 90
Query: 111 NALNGEYKLLQNAVVREVGKSNVITGDEIILNKTKGYADVLGSAKR 156
+ L NA + E G+ V+ DEII+ K + G KR
Sbjct: 91 DLRKEIIHLKGNAKIEENGR--VVEADEIIIYKREKRLVAKGKGKR 134
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.316 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,121,929
Number of Sequences: 1026957
Number of extensions: 4550672
Number of successful extensions: 12754
Number of sequences better than 1.0e-02: 4
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12749
Number of HSP's gapped (non-prelim): 4
length of query: 183
length of database: 324,149,939
effective HSP length: 114
effective length of query: 69
effective length of database: 207,076,841
effective search space: 14288302029
effective search space used: 14288302029
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 93 (40.4 bits)