BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646176|ref|NP_208360.1| hypothetical protein
[Helicobacter pylori 26695]
(197 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208360.1| (NC_000915) hypothetical protein [Helicoba... 392 e-108
ref|NP_224195.1| (NC_000921) putative [Helicobacter pylori ... 384 e-106
>ref|NP_208360.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64716 hypothetical protein HP1569 - Helicobacter pylori (strain 26695)
gb|AAD08612.1| (AE000654) H. pylori predicted coding region HP1569 [Helicobacter
pylori 26695]
Length = 197
Score = 392 bits (1006), Expect = e-108
Identities = 197/197 (100%), Positives = 197/197 (100%)
Query: 1 MKRSSFTSNSVLNFFVVLSFITIGLVFFFLRSQPTSVVSKENIPKIELENFKAFQINDKI 60
MKRSSFTSNSVLNFFVVLSFITIGLVFFFLRSQPTSVVSKENIPKIELENFKAFQINDKI
Sbjct: 1 MKRSSFTSNSVLNFFVVLSFITIGLVFFFLRSQPTSVVSKENIPKIELENFKAFQINDKI 60
Query: 61 LDLSIEGKKALQYDDHEIFFDSKIKRYDEDTIESVESPKAKRQQDLYFFPNGVTYKRSDD 120
LDLSIEGKKALQYDDHEIFFDSKIKRYDEDTIESVESPKAKRQQDLYFFPNGVTYKRSDD
Sbjct: 61 LDLSIEGKKALQYDDHEIFFDSKIKRYDEDTIESVESPKAKRQQDLYFFPNGVTYKRSDD 120
Query: 121 SSFWSETGIYNHKEQNFKGKGRFILTSKDSKIEGLDISYSHALAIIEAQSIQAHLFLDEI 180
SSFWSETGIYNHKEQNFKGKGRFILTSKDSKIEGLDISYSHALAIIEAQSIQAHLFLDEI
Sbjct: 121 SSFWSETGIYNHKEQNFKGKGRFILTSKDSKIEGLDISYSHALAIIEAQSIQAHLFLDEI 180
Query: 181 KQSQKEKKKFPTFKGGF 197
KQSQKEKKKFPTFKGGF
Sbjct: 181 KQSQKEKKKFPTFKGGF 197
>ref|NP_224195.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71802 hypothetical protein jhp1477 - Helicobacter pylori (strain J99)
gb|AAD07049.1| (AE001569) putative [Helicobacter pylori J99]
Length = 197
Score = 384 bits (986), Expect = e-106
Identities = 193/197 (97%), Positives = 196/197 (98%)
Query: 1 MKRSSFTSNSVLNFFVVLSFITIGLVFFFLRSQPTSVVSKENIPKIELENFKAFQINDKI 60
MK SSFTSNSVLNFFVVLSFITIGLVFFFLRSQPTSVVSKENIPKIELENFKAFQINDKI
Sbjct: 1 MKCSSFTSNSVLNFFVVLSFITIGLVFFFLRSQPTSVVSKENIPKIELENFKAFQINDKI 60
Query: 61 LDLSIEGKKALQYDDHEIFFDSKIKRYDEDTIESVESPKAKRQQDLYFFPNGVTYKRSDD 120
LDLSIEGKKALQYDDHEIFFDSKIKRYDEDTIESVESP+AKRQQDLYFFPNGVTYKRSDD
Sbjct: 61 LDLSIEGKKALQYDDHEIFFDSKIKRYDEDTIESVESPEAKRQQDLYFFPNGVTYKRSDD 120
Query: 121 SSFWSETGIYNHKEQNFKGKGRFILTSKDSKIEGLDISYSHALAIIEAQSIQAHLFLDEI 180
SSFWSETGIYNHKEQNFKGKGRFILTSKDSK+EGLDISYSHALAIIEAQSIQA+LFLDEI
Sbjct: 121 SSFWSETGIYNHKEQNFKGKGRFILTSKDSKVEGLDISYSHALAIIEAQSIQANLFLDEI 180
Query: 181 KQSQKEKKKFPTFKGGF 197
KQSQKEKKKFPTFKGGF
Sbjct: 181 KQSQKEKKKFPTFKGGF 197
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.136 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,414,815
Number of Sequences: 1026957
Number of extensions: 4856736
Number of successful extensions: 13813
Number of sequences better than 1.0e-02: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13811
Number of HSP's gapped (non-prelim): 2
length of query: 197
length of database: 324,149,939
effective HSP length: 115
effective length of query: 82
effective length of database: 206,049,884
effective search space: 16896090488
effective search space used: 16896090488
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 94 (40.8 bits)