BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646177|ref|NP_208361.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(164 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208361.1| (NC_000915) conserved hypothetical protein... 324 2e-88
ref|NP_224196.1| (NC_000921) putative [Helicobacter pylori ... 317 3e-86
ref|NP_603120.1| (NC_003454) N-acylneuraminate-9-phosphatas... 132 2e-30
ref|NP_281830.1| (NC_002163) hypothetical protein Cj0647 [C... 123 7e-28
ref|NP_289772.1| (NC_002655) orf, hypothetical protein [Esc... 123 7e-28
ref|NP_457695.1| (NC_003198) conserved hypothetical protein... 123 9e-28
ref|NP_462226.1| (NC_003197) putative protein of HAD superf... 123 9e-28
ref|NP_439821.1| (NC_000907) conserved hypothetical protein... 120 7e-27
pdb|1J8D|A Chain A, Structure Of The Metal-Free Form Of The... 119 2e-26
ref|NP_284827.1| (NC_003116) conserved hypothetical protein... 118 2e-26
ref|NP_273402.1| (NC_003112) conserved hypothetical protein... 118 3e-26
ref|NP_245461.1| (NC_002663) unknown [Pasteurella multocida... 117 4e-26
ref|NP_618639.1| (NC_003552) acylneuraminate cytidylyltrans... 115 1e-25
ref|NP_253148.1| (NC_002516) conserved hypothetical protein... 114 5e-25
ref|NP_643277.1| (NC_003919) conserved hypothetical protein... 112 1e-24
ref|NP_214489.1| (NC_000918) hypothetical protein [Aquifex ... 112 2e-24
ref|NP_407035.1| (NC_003143) conserved hypothetical protein... 111 3e-24
ref|NP_638146.1| (NC_003902) conserved hypothetical protein... 110 4e-24
ref|NP_232153.1| (NC_002505) conserved hypothetical protein... 107 5e-23
ref|NP_298701.1| (NC_002488) conserved hypothetical protein... 106 8e-23
emb|CAC12689.1| (AJ272115) hypothetical protein [Thauera ar... 102 1e-21
ref|NP_661718.1| (NC_002932) conserved hypothetical protein... 100 6e-21
ref|NP_518533.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN... 98 4e-20
ref|NP_660993.1| (NC_002932) conserved hypothetical protein... 81 4e-15
ref|NP_061156.1| (NM_018686) CMP-N-acetylneuraminic acid sy... 79 1e-14
gb|AAH04606.1|AAH04606 (BC004606) Similar to cytidine monop... 75 2e-13
ref|XP_132934.1| (XM_132934) expressed sequence AW208911 [M... 75 2e-13
emb|CAA06915.1| (AJ006215) CMP-N-acetylneuraminic acid synt... 75 2e-13
gb|AAH31500.1| (BC031500) cytidine monophospho-N-acetylneur... 75 2e-13
gb|AAA57999.1| (U18997) ORF_o131 [Escherichia coli] 73 1e-12
ref|NP_629033.1| (NC_003888) putative transferase [Streptom... 68 3e-11
dbj|BAB47150.1| (AB027414) CMP-sialic acid synthetase [Onco... 66 1e-10
ref|NP_658103.1| (NC_003995) Trehalose_PPase, Trehalose-pho... 56 2e-07
gb|AAA58000.1| (U18997) ORF_o69 [Escherichia coli] 54 5e-07
ref|NP_658091.1| (NC_003995) Hydrolase, haloacid dehalogena... 49 2e-05
ref|NP_248603.1| (NC_000909) phosphoserine phosphatase (ser... 47 6e-05
pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue ... 47 6e-05
ref|NP_579148.1| (NC_003413) hypothetical protein [Pyrococc... 46 1e-04
ref|NP_281475.1| (NC_002163) putative phosphoserine phospha... 45 2e-04
sp|P43051|YUPP_MYCHO Hypothetical 31.6 kDa protein in UPP 3... 45 3e-04
pdb|1L7M|B Chain B, High Resolution Liganded Structure Of P... 45 3e-04
ref|NP_618426.1| (NC_003552) conserved hypothetical protein... 44 5e-04
ref|NP_276738.1| (NC_000916) phosphoserine phosphatase [Met... 43 0.001
ref|NP_458515.1| (NC_003198) conserved hypothetical protein... 43 0.001
ref|NP_069280.1| (NC_000917) conserved hypothetical protein... 43 0.001
ref|NP_126418.1| (NC_000868) hypothetical protein [Pyrococc... 43 0.001
ref|NP_562228.1| (NC_003366) conserved hypothetical protein... 42 0.003
ref|NP_253647.1| (NC_002516) probable phosphoserine phospha... 42 0.003
ref|NP_143292.1| (NC_000961) hypothetical protein [Pyrococc... 42 0.003
ref|NP_266761.1| (NC_002662) phosphoserine phosphatase (EC ... 41 0.004
ref|NP_341661.1| (NC_002754) Conserved hypothetical protein... 41 0.004
ref|NP_143712.1| (NC_000961) phosphoserine phosphatase [Pyr... 41 0.006
ref|NP_561440.1| (NC_003366) conserved hypothetical protein... 40 0.007
>ref|NP_208361.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||B64716 conserved hypothetical protein HP1570 - Helicobacter pylori
(strain 26695)
gb|AAD08607.1| (AE000654) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 164
Score = 324 bits (831), Expect = 2e-88
Identities = 164/164 (100%), Positives = 164/164 (100%)
Query: 1 MIKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVK 60
MIKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVK
Sbjct: 1 MIKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVK 60
Query: 61 KRMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFD 120
KRMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFD
Sbjct: 61 KRMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFD 120
Query: 121 AHPLLKSKAYKVLQNSGGKGAVREAIDYLLTLEGLQDEALKLYL 164
AHPLLKSKAYKVLQNSGGKGAVREAIDYLLTLEGLQDEALKLYL
Sbjct: 121 AHPLLKSKAYKVLQNSGGKGAVREAIDYLLTLEGLQDEALKLYL 164
>ref|NP_224196.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71802 hypothetical protein jhp1478 - Helicobacter pylori (strain J99)
gb|AAD07050.1| (AE001569) putative [Helicobacter pylori J99]
Length = 164
Score = 317 bits (812), Expect = 3e-86
Identities = 160/164 (97%), Positives = 160/164 (97%)
Query: 1 MIKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVK 60
MIKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVK
Sbjct: 1 MIKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVK 60
Query: 61 KRMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFD 120
KRMESLGVQFVFMGVENKN VIERLKKDLQLSAQEIACVGDDYNDLGMFKAC LSFAPFD
Sbjct: 61 KRMESLGVQFVFMGVENKNAVIERLKKDLQLSAQEIACVGDDYNDLGMFKACTLSFAPFD 120
Query: 121 AHPLLKSKAYKVLQNSGGKGAVREAIDYLLTLEGLQDEALKLYL 164
AHPLLKSKAYKVLQNSGGKGAVREAIDYLL LEGLQDE LKLYL
Sbjct: 121 AHPLLKSKAYKVLQNSGGKGAVREAIDYLLELEGLQDEVLKLYL 164
>ref|NP_603120.1| (NC_003454) N-acylneuraminate-9-phosphatase [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gb|AAL94419.1| (AE010534) N-acylneuraminate-9-phosphatase [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 168
Score = 132 bits (331), Expect = 2e-30
Identities = 65/162 (40%), Positives = 103/162 (63%)
Query: 2 IKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKK 61
IK+L+LDVDGTLT+G +Y D+ + KAFNVKDG + W KLG ++AI+TG+ S +V++
Sbjct: 4 IKILVLDVDGTLTNGKIYVDDKDNSFKAFNVKDGFALVNWLKLGGEVAILTGKKSNIVER 63
Query: 62 RMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDA 121
R E LG+++V G +NK ++ L L ++ + A +GDD NDLG+ K L+ P D+
Sbjct: 64 RAEELGIKYVIQGSKNKTQDLKNLLDRLNITFENTAYMGDDLNDLGVMKNVGLTACPKDS 123
Query: 122 HPLLKSKAYKVLQNSGGKGAVREAIDYLLTLEGLQDEALKLY 163
+ + + +GG GAVRE ++Y++ G+ + L+ Y
Sbjct: 124 VQEILEISNFISSKNGGDGAVREFLEYIMKNNGMWKKILEKY 165
>ref|NP_281830.1| (NC_002163) hypothetical protein Cj0647 [Campylobacter jejuni]
pir||F81413 hypothetical protein Cj0647 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB75283.1| (AL139075) hypothetical protein Cj0647 [Campylobacter jejuni]
Length = 162
Score = 123 bits (309), Expect = 7e-28
Identities = 67/164 (40%), Positives = 96/164 (57%), Gaps = 2/164 (1%)
Query: 1 MIKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVK 60
M +L+ LDVDG LTDG + + N IK FNVKDG + W KLGKKIAIITGR V+
Sbjct: 1 MTELIFLDVDGCLTDGKIIYTSNGEFIKEFNVKDGAAIEAWLKLGKKIAIITGRNCPCVE 60
Query: 61 KRMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFD 120
KR + L ++ ++ G+++K + + + L L + A +GD +ND + ++ LSF P D
Sbjct: 61 KRAKDLKIKILYQGIKDKLACAKEILQKLNLDFSQCAAIGDYFNDKALLESVGLSFKPKD 120
Query: 121 AHPLLKSKAYKVLQNSGGKGAVREAIDYLLTLEGLQDEALKLYL 164
H L VL GGK AV + I+ L+ L++E KL+L
Sbjct: 121 GHKDLNVDI--VLSKKGGKAAVAQMIEILVEKNHLEEEWNKLWL 162
>ref|NP_289772.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_312104.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
ref|NP_417665.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P45396|YRBI_ECOLI Hypothetical protein yrbI
pir||H65110 hypothetical 20.0 kD protein in murZ-rpoN intergenic region -
Escherichia coli (strain K-12)
gb|AAC76230.1| (AE000399) orf, hypothetical protein [Escherichia coli K12]
gb|AAG58332.1|AE005548_3 (AE005548) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB37500.1| (AP002564) hypothetical protein [Escherichia coli O157:H7]
Length = 188
Score = 123 bits (309), Expect = 7e-28
Identities = 68/158 (43%), Positives = 96/158 (60%)
Query: 2 IKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKK 61
I+LL+LDVDG L+DG +Y N E+KAFNV+DG G+ ++AIITGR + +V+
Sbjct: 26 IRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVED 85
Query: 62 RMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDA 121
R +LG+ ++ G NK L + L ++ + +A VGDD D + + LS A DA
Sbjct: 86 RCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADA 145
Query: 122 HPLLKSKAYKVLQNSGGKGAVREAIDYLLTLEGLQDEA 159
HPLL +A V + +GG+GAVRE D LL +G DEA
Sbjct: 146 HPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEA 183
>ref|NP_457695.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
emb|CAD07833.1| (AL627278) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 188
Score = 123 bits (308), Expect = 9e-28
Identities = 68/158 (43%), Positives = 95/158 (60%)
Query: 2 IKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKK 61
I+LL+LDVDG L+DG +Y N E+KAFNV+DG G+ ++AIITGR + +V+
Sbjct: 26 IRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSNIEVAIITGRKAKLVED 85
Query: 62 RMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDA 121
R +LG+ ++ G NK L + L ++ + +A VGDD D + + LS A DA
Sbjct: 86 RCATLGIVHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADA 145
Query: 122 HPLLKSKAYKVLQNSGGKGAVREAIDYLLTLEGLQDEA 159
HPLL +A V +GG+GAVRE D LL +G DEA
Sbjct: 146 HPLLIPRADYVTHIAGGRGAVREVCDLLLLAQGKLDEA 183
>ref|NP_462226.1| (NC_003197) putative protein of HAD superfamily, CMP-Neu5Ac
homologs [Salmonella typhimurium LT2]
gb|AAL22185.1| (AE008852) putative protein of HAD superfamily, CMP-Neu5Ac homologs
[Salmonella typhimurium LT2]
Length = 188
Score = 123 bits (308), Expect = 9e-28
Identities = 68/158 (43%), Positives = 95/158 (60%)
Query: 2 IKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKK 61
I+LL+LDVDG L+DG +Y N E+KAFNV+DG G+ ++AIITGR + +V+
Sbjct: 26 IRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSNIEVAIITGRKAKLVED 85
Query: 62 RMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDA 121
R +LG+ ++ G NK L + L ++ + +A VGDD D + + LS A DA
Sbjct: 86 RCATLGIVHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADA 145
Query: 122 HPLLKSKAYKVLQNSGGKGAVREAIDYLLTLEGLQDEA 159
HPLL +A V +GG+GAVRE D LL +G DEA
Sbjct: 146 HPLLIPRADYVTHIAGGRGAVREVCDLLLLAQGKLDEA 183
>ref|NP_439821.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|P45314|YRBI_HAEIN Hypothetical protein HI1679
pir||G64174 hypothetical protein HI1679 - Haemophilus influenzae (strain Rd
KW20)
pdb|1K1E|A Chain A, Structure Of The Cobalt-Bound Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
pdb|1K1E|B Chain B, Structure Of The Cobalt-Bound Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
pdb|1K1E|E Chain E, Structure Of The Cobalt-Bound Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
pdb|1K1E|F Chain F, Structure Of The Cobalt-Bound Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
pdb|1K1E|I Chain I, Structure Of The Cobalt-Bound Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
pdb|1K1E|J Chain J, Structure Of The Cobalt-Bound Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
pdb|1K1E|C Chain C, Structure Of The Cobalt-Bound Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
pdb|1K1E|K Chain K, Structure Of The Cobalt-Bound Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
pdb|1K1E|H Chain H, Structure Of The Cobalt-Bound Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
pdb|1K1E|D Chain D, Structure Of The Cobalt-Bound Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
pdb|1K1E|G Chain G, Structure Of The Cobalt-Bound Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
pdb|1K1E|L Chain L, Structure Of The Cobalt-Bound Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
gb|AAC23325.1| (U32841) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 180
Score = 120 bits (300), Expect = 7e-27
Identities = 62/153 (40%), Positives = 93/153 (60%)
Query: 2 IKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKK 61
IK ++ DVDG LTDG L++D N IK+F+V+DGLG+ + ++A+++GR S ++++
Sbjct: 8 IKFVITDVDGVLTDGQLHYDANGEAIKSFHVRDGLGIKMLMDADIQVAVLSGRDSPILRR 67
Query: 62 RMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDA 121
R+ LG++ F+G K T L K ++A++ A +GDD DL F AC SFA DA
Sbjct: 68 RIADLGIKLFFLGKLEKETACFDLMKQAGVTAEQTAYIGDDSVDLPAFAACGTSFAVADA 127
Query: 122 HPLLKSKAYKVLQNSGGKGAVREAIDYLLTLEG 154
+K+ VL GGKGA RE D +L +G
Sbjct: 128 PIYVKNAVDHVLSTHGGKGAFREMSDMILQAQG 160
>pdb|1J8D|A Chain A, Structure Of The Metal-Free Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
pdb|1J8D|B Chain B, Structure Of The Metal-Free Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
pdb|1J8D|C Chain C, Structure Of The Metal-Free Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
pdb|1J8D|D Chain D, Structure Of The Metal-Free Form Of The Phosphatase Yrbi
From Haemophilus Influenzae (Hi1679)
Length = 180
Score = 119 bits (297), Expect = 2e-26
Identities = 62/153 (40%), Positives = 92/153 (59%)
Query: 2 IKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKK 61
IK ++ DVDG LTDG L++D N IK+F+V+DGLG+ ++A+++GR S ++++
Sbjct: 8 IKFVITDVDGVLTDGQLHYDANGEAIKSFHVRDGLGIKXLXDADIQVAVLSGRDSPILRR 67
Query: 62 RMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDA 121
R+ LG++ F+G K T L K ++A++ A +GDD DL F AC SFA DA
Sbjct: 68 RIADLGIKLFFLGKLEKETACFDLXKQAGVTAEQTAYIGDDSVDLPAFAACGTSFAVADA 127
Query: 122 HPLLKSKAYKVLQNSGGKGAVREAIDYLLTLEG 154
+K+ VL GGKGA RE D +L +G
Sbjct: 128 PIYVKNAVDHVLSTHGGKGAFREXSDXILQAQG 160
>ref|NP_284827.1| (NC_003116) conserved hypothetical protein [Neisseria meningitidis
Z2491]
pir||C81785 conserved hypothetical protein NMA2134 [imported] - Neisseria
meningitidis (group A strain Z2491)
emb|CAB85346.1| (AL162758) conserved hypothetical protein [Neisseria meningitidis
Z2491]
Length = 178
Score = 118 bits (296), Expect = 2e-26
Identities = 65/163 (39%), Positives = 91/163 (54%)
Query: 2 IKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKK 61
IKLL+LDVDG LTDG ++ +N EIK+F+ DG G+ + Q G + AIITGR + V
Sbjct: 15 IKLLILDVDGVLTDGRIFIRDNGEEIKSFHTLDGHGLKMLQASGVQTAIITGRDAPSVGI 74
Query: 62 RMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDA 121
R++ LG+ + F G+ +K E L+ + + E A VGDD DL + C L A DA
Sbjct: 75 RVKQLGINYYFKGISDKRAAYEELRAQVGVEEAECAFVGDDVVDLPVMVRCGLPVAVPDA 134
Query: 122 HPLLKSKAYKVLQNSGGKGAVREAIDYLLTLEGLQDEALKLYL 164
H A + + GG GAVRE D ++ +G AL Y+
Sbjct: 135 HWFTLQHAAYIAKRPGGAGAVREVCDLIMQAQGTLGAALNEYI 177
>ref|NP_273402.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||H81207 conserved hypothetical protein NMB0353 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF40796.1| (AE002392) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 178
Score = 118 bits (295), Expect = 3e-26
Identities = 64/163 (39%), Positives = 92/163 (56%)
Query: 2 IKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKK 61
IKLL+LDVDG LTDG ++ +N EIK+F+ DG G+ + Q G + AIITGR + V
Sbjct: 15 IKLLILDVDGVLTDGRIFIRDNGEEIKSFHTLDGHGLKMLQASGVQTAIITGRDAPSVGI 74
Query: 62 RMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDA 121
R++ LG+ + F G+ +K E L+ + E A VGDD DL + C L A A
Sbjct: 75 RVKQLGINYYFKGISDKRAAYEELRAQAGVEEAECAFVGDDVVDLPVMVRCGLPVAVPGA 134
Query: 122 HPLLKSKAYKVLQNSGGKGAVREAIDYLLTLEGLQDEALKLYL 164
H + A + +++GG GAVRE D ++ +G AL Y+
Sbjct: 135 HWFTRQHAAYITEHAGGAGAVREVCDLIMQAQGTLGAALNEYI 177
>ref|NP_245461.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK02608.1| (AE006087) unknown [Pasteurella multocida]
Length = 181
Score = 117 bits (294), Expect = 4e-26
Identities = 61/156 (39%), Positives = 93/156 (59%)
Query: 2 IKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKK 61
IK ++ D+DG LTDGSL++D + K F+V+DGLG+ + + G ++A+++GR S +++K
Sbjct: 9 IKFVITDIDGVLTDGSLHYDAHGEAFKTFHVRDGLGIRMLMESGIQVAVLSGRDSPILRK 68
Query: 62 RMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDA 121
R+ LG+Q F+G K + L + + AQE A +GDD DL F C ++FA DA
Sbjct: 69 RIADLGIQHFFLGKLEKESACLELIQQANVCAQETAYIGDDSVDLPAFAVCGVAFAVQDA 128
Query: 122 HPLLKSKAYKVLQNSGGKGAVREAIDYLLTLEGLQD 157
+K A VL GG+GA RE D +L + D
Sbjct: 129 PAYIKMHADHVLILKGGQGAFREMSDMILAAQNKSD 164
>ref|NP_618639.1| (NC_003552) acylneuraminate cytidylyltransferase [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM07119.1| (AE011088) acylneuraminate cytidylyltransferase [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 390
Score = 115 bits (289), Expect = 1e-25
Identities = 60/149 (40%), Positives = 88/149 (58%)
Query: 2 IKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKK 61
IKLL+ DVDG LTD +Y+ E E+K FN +DG+G+ L ++ G K AIIT + +V+
Sbjct: 237 IKLLITDVDGVLTDCGMYYSEYGDELKKFNTRDGMGIQLLREYGIKTAIITKENTKIVES 296
Query: 62 RMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDA 121
R + L V V G++NK V E L+K L E+ VGDD ND+ + + +SF P DA
Sbjct: 297 RAKKLKVDDVHQGIDNKLIVFEELRKKYNLDYSEVVYVGDDINDIPVLEKTGISFCPNDA 356
Query: 122 HPLLKSKAYKVLQNSGGKGAVREAIDYLL 150
+K VL GG+G +RE ++ ++
Sbjct: 357 IDEVKDVCDYVLSKKGGEGTIREIVELVI 385
>ref|NP_253148.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||B83087 conserved hypothetical protein PA4458 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG07846.1|AE004860_2 (AE004860) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 179
Score = 114 bits (284), Expect = 5e-25
Identities = 61/163 (37%), Positives = 94/163 (57%)
Query: 2 IKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKK 61
I+L + DVDG LTDG LYF + E K FN DG G+ + G + AIITGR + +V++
Sbjct: 17 IRLAIFDVDGVLTDGKLYFLVDGSEFKTFNTLDGHGIKMLIASGVRTAIITGRDTPVVER 76
Query: 62 RMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDA 121
R +LG+Q ++ G E+K V++ L +L L +++A +GDD DL + + L A A
Sbjct: 77 RARNLGIQHLYQGREDKLAVLDELLGELGLGYEQVAYLGDDLPDLPVIRRVGLGMAVASA 136
Query: 122 HPLLKSKAYKVLQNSGGKGAVREAIDYLLTLEGLQDEALKLYL 164
P ++ A+ V GG+GA RE + ++ +G + A YL
Sbjct: 137 DPFVRQHAHGVTAARGGEGAAREFCELIMRAQGTLEAAQSAYL 179
>ref|NP_643277.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM37813.1| (AE011938) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 182
Score = 112 bits (281), Expect = 1e-24
Identities = 62/162 (38%), Positives = 92/162 (56%), Gaps = 1/162 (0%)
Query: 2 IKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKK 61
++L DVDGTLTDG LY+D HE KAFNV DG G+ G ++A+IT R S+ +K
Sbjct: 20 VRLACFDVDGTLTDGRLYYDHAGHESKAFNVLDGQGLKQLDHAGIQVALITARASLSAEK 79
Query: 62 RMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDA 121
R + LG+ V +GV+NK + L ++ LS ++ +GDD DL A L AP +A
Sbjct: 80 RGQDLGLH-VQIGVKNKRLAVLALCQEHGLSLDQVLFMGDDLPDLPALLAVGLPVAPANA 138
Query: 122 HPLLKSKAYKVLQNSGGKGAVREAIDYLLTLEGLQDEALKLY 163
HP + + + GG+GA RE D +L +G + ++ +
Sbjct: 139 HPWIAERVQWHTRARGGEGAAREVCDVVLAAQGQVERIIERF 180
>ref|NP_214489.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
pir||D70486 conserved hypothetical protein aq_2171 - Aquifex aeolicus
gb|AAC07894.1| (AE000776) hypothetical protein [Aquifex aeolicus]
Length = 163
Score = 112 bits (280), Expect = 2e-24
Identities = 56/148 (37%), Positives = 91/148 (60%)
Query: 2 IKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKK 61
+KLL++D+DG LTDG LY+ E+ IK FNV DG+G+ L QK+G +A+I+GR S +
Sbjct: 10 LKLLIMDIDGVLTDGKLYYTEHGETIKVFNVLDGIGIKLLQKMGITLAVISGRDSAPLIT 69
Query: 62 RMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDA 121
R++ LGV+ ++ G K + E++K+ L +EI +GDD D+ + K A +A
Sbjct: 70 RLKELGVEEIYTGSYKKLEIYEKIKEKYSLKDEEIGFIGDDVVDIEVMKKVGFPVAVRNA 129
Query: 122 HPLLKSKAYKVLQNSGGKGAVREAIDYL 149
++ A + Q +GG+GA+RE + +
Sbjct: 130 VEEVRKVAVYITQRNGGEGALREVAELI 157
>ref|NP_407035.1| (NC_003143) conserved hypothetical protein [Yersinia pestis]
emb|CAC92807.1| (AJ414157) conserved hypothetical protein [Yersinia pestis]
Length = 187
Score = 111 bits (277), Expect = 3e-24
Identities = 59/149 (39%), Positives = 86/149 (57%)
Query: 2 IKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKK 61
I+LL+ DVDG ++DG +Y E+KAFNV+DG G+ +AIITGR + +++
Sbjct: 25 IRLLICDVDGVMSDGLIYMGNQGEELKAFNVRDGYGIRCLITSDIDVAIITGRRAKLLED 84
Query: 62 RMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDA 121
R +LG+ ++ G +K L LQ +++A +GDD D + LS A DA
Sbjct: 85 RANTLGITHLYQGQSDKLVAYHELLATLQCQPEQVAYIGDDLIDWPVMAQVGLSVAVADA 144
Query: 122 HPLLKSKAYKVLQNSGGKGAVREAIDYLL 150
HPLL KA+ V + GG+GAVRE D +L
Sbjct: 145 HPLLLPKAHYVTRIKGGRGAVREVCDLIL 173
>ref|NP_638146.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM42070.1| (AE012392) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 182
Score = 110 bits (276), Expect = 4e-24
Identities = 62/159 (38%), Positives = 90/159 (55%), Gaps = 1/159 (0%)
Query: 2 IKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKK 61
++L DVDGTLTDG LY+D +E KAFNV DG G+ + G +A+IT R S+ +K
Sbjct: 20 VRLACFDVDGTLTDGRLYYDHAGNESKAFNVLDGQGLKQLEHAGIHVALITARASLSAEK 79
Query: 62 RMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDA 121
R + LG+ V +GV+NK + L ++ LS ++ +GDD DL A L AP +A
Sbjct: 80 RGQDLGLH-VQIGVKNKRLAVLALCQEHGLSLDQVLFMGDDLPDLPALLAVGLPVAPANA 138
Query: 122 HPLLKSKAYKVLQNSGGKGAVREAIDYLLTLEGLQDEAL 160
HP + + + GG+GA RE D +L +G D +
Sbjct: 139 HPWIAERVQWHTRARGGEGAAREVCDVVLAAQGQVDSII 177
>ref|NP_232153.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||B82065 conserved hypothetical protein VC2524 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF95666.1| (AE004322) conserved hypothetical protein [Vibrio cholerae]
Length = 185
Score = 107 bits (267), Expect = 5e-23
Identities = 56/149 (37%), Positives = 84/149 (55%)
Query: 2 IKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKK 61
IKLL+ DVDG +DG +Y E+K F+ +DG G+ G +IAIITGR S +V+
Sbjct: 23 IKLLICDVDGVFSDGLIYMGNQGEELKTFHTRDGYGVKALMNAGIEIAIITGRRSQIVEN 82
Query: 62 RMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDA 121
RM++LG+ ++ G ++K + + L ++ ++ +GDD D + + AL D
Sbjct: 83 RMKALGISLIYQGQDDKVQAYYDICQKLAIAPEQTGYIGDDLIDWPVMEKVALRVCVADG 142
Query: 122 HPLLKSKAYKVLQNSGGKGAVREAIDYLL 150
HPLL +A V GG GAVRE D +L
Sbjct: 143 HPLLAQRANYVTHIKGGHGAVREVCDLIL 171
>ref|NP_298701.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||A82684 conserved hypothetical protein XF1412 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF84221.1|AE003972_6 (AE003972) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 182
Score = 106 bits (265), Expect = 8e-23
Identities = 59/162 (36%), Positives = 87/162 (53%), Gaps = 1/162 (0%)
Query: 2 IKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKK 61
I+L DVDGTLTDG LY+D HE KAF+V DG G+ + G ++ +IT S+ KK
Sbjct: 20 IRLACFDVDGTLTDGRLYYDHVGHESKAFHVLDGQGLKQLEHCGIRVTLITALASLAAKK 79
Query: 62 RMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDA 121
R E LG+ + +GV++K ++ L + + + +GDD DL L AP +A
Sbjct: 80 RAEDLGLP-IKIGVQDKRLAVQTLAMESGIGMDAVLFMGDDLVDLPALLTVGLPVAPANA 138
Query: 122 HPLLKSKAYKVLQNSGGKGAVREAIDYLLTLEGLQDEALKLY 163
HP + + + GG+GA RE D LL + D L+ +
Sbjct: 139 HPWIAERVAWQTRARGGEGAAREVCDVLLAAQDKVDALLRKF 180
>emb|CAC12689.1| (AJ272115) hypothetical protein [Thauera aromatica]
Length = 169
Score = 102 bits (255), Expect = 1e-21
Identities = 58/159 (36%), Positives = 90/159 (56%)
Query: 2 IKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKK 61
IKL++LDVDG +TDG + ++ E + F++KDG+G+ + Q G ++AIIT + S V+
Sbjct: 7 IKLVILDVDGVMTDGRIVINDEGIESRNFDIKDGMGVIVLQLCGVEVAIITSKKSGAVRH 66
Query: 62 RMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDA 121
R E L ++ G++ K ++ +++ +S E+ VGDD DL M K L+ A DA
Sbjct: 67 RAEELKIKRFHEGIKKKTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAVAVGDA 126
Query: 122 HPLLKSKAYKVLQNSGGKGAVREAIDYLLTLEGLQDEAL 160
+K A V GG GAVRE + +L +G D L
Sbjct: 127 VADVKEVAAYVTTARGGHGAVREVAELILKAQGKWDAML 165
>ref|NP_661718.1| (NC_002932) conserved hypothetical protein [Chlorobium tepidum TLS]
gb|AAM72060.1| (AE012850) conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 172
Score = 100 bits (249), Expect = 6e-21
Identities = 53/154 (34%), Positives = 90/154 (58%), Gaps = 3/154 (1%)
Query: 2 IKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKK 61
I+L+L D DG TD +Y+ E E K ++++DG+G+ ++ G + I+TG S + +
Sbjct: 16 IRLVLSDNDGVFTDNGVYYSERGEEFKRYSIRDGMGVERLREHGVETGIMTGEVSPSIVR 75
Query: 62 RMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACA---LSFAP 118
R + L ++ +++GV++K + + + D LS EIA +GDD ND+G+ A A L P
Sbjct: 76 RAQKLHIERLYLGVKDKQSRLADVLSDTGLSKAEIAYIGDDVNDIGIMNAIAPFGLVACP 135
Query: 119 FDAHPLLKSKAYKVLQNSGGKGAVREAIDYLLTL 152
DA PL++ + GG+GA RE ++L+ L
Sbjct: 136 GDAMPLVEPCVHYRCTAQGGRGAFREYAEWLIAL 169
>ref|NP_518533.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
emb|CAD13940.1| (AL646059) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
Length = 195
Score = 97.8 bits (242), Expect = 4e-20
Identities = 55/159 (34%), Positives = 82/159 (50%)
Query: 2 IKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKK 61
++L++ DVDG LTDG L KAF+ DG G+ L + G AIITGR S +V
Sbjct: 27 VRLMIFDVDGVLTDGRLLVGPQGEISKAFDTLDGHGIKLLAQAGITPAIITGRESEIVAW 86
Query: 62 RMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDA 121
R LG++ ++ GV +K L L + +GDD+ DL + + P A
Sbjct: 87 RAGELGIEHLYQGVADKREAFVHLLAATALQPADAGYMGDDWPDLPVMAQVGFAACPAQA 146
Query: 122 HPLLKSKAYKVLQNSGGKGAVREAIDYLLTLEGLQDEAL 160
H ++S+ + V + GG+GA RE D +L +G D+ L
Sbjct: 147 HAEVRSRCHYVTRAKGGRGAAREVADLILKAQGAYDDLL 185
>ref|NP_660993.1| (NC_002932) conserved hypothetical protein [Chlorobium tepidum TLS]
gb|AAM71335.1| (AE012788) conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 190
Score = 81.3 bits (199), Expect = 4e-15
Identities = 46/153 (30%), Positives = 76/153 (49%)
Query: 2 IKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKK 61
IK L++ +DG LT G + D E+ +D G+ +LG K+AII GR + ++
Sbjct: 27 IKALVISLDGVLTSGVITLDGEGREMPTLFARDLAGLREALRLGMKVAIIAGRQAGAFRQ 86
Query: 62 RMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDA 121
+E+ G +F+ E + E K L E AC+ DD +DL + K L P +
Sbjct: 87 MLEATGPIDLFLDGEERLDAYEAFKSRHGLQDDECACIADDIDDLELLKKAGLPVTPING 146
Query: 122 HPLLKSKAYKVLQNSGGKGAVREAIDYLLTLEG 154
L+++ + GG+G VRE ++ +L +G
Sbjct: 147 AEYLRNRVAYISVFEGGRGCVREIVEMVLDHQG 179
>ref|NP_061156.1| (NM_018686) CMP-N-acetylneuraminic acid synthase; cytidine
5'-monophosphate N-acetylneuraminic acid synthetase;
cytidine monophospho-N-acetylneuraminic acid synthetase
[Homo sapiens]
gb|AAF76203.1|AF271388_1 (AF271388) CMP-N-acetylneuraminic acid synthase [Homo sapiens]
dbj|BAB14311.1| (AK022927) unnamed protein product [Homo sapiens]
Length = 434
Score = 79.3 bits (194), Expect = 1e-14
Identities = 47/152 (30%), Positives = 90/152 (58%), Gaps = 3/152 (1%)
Query: 2 IKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKK 61
IKLL+ ++DG LT+G +Y + EI +++VKD +G++L +K G ++ +I+ R K+
Sbjct: 275 IKLLVCNIDGCLTNGHIYVSGDQKEIISYDVKDAIGISLLKKSGIEVRLISERA--CSKQ 332
Query: 62 RMESLGVQF-VFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFD 120
+ SL + + + V +K V++ +K++ L +E+A +G++ +D K LS AP D
Sbjct: 333 TLSSLKLDCKMEVSVSDKLAVVDEWRKEMGLCWKEVAYLGNEVSDEECLKRVGLSGAPAD 392
Query: 121 AHPLLKSKAYKVLQNSGGKGAVREAIDYLLTL 152
A + + + +GG+GA+RE +++ L
Sbjct: 393 ACSTAQKAVGYICKCNGGRGAIREFAEHICLL 424
>gb|AAH04606.1|AAH04606 (BC004606) Similar to cytidine monophospho-N-acetylneuraminic acid
synthetase [Mus musculus]
Length = 166
Score = 75.5 bits (184), Expect = 2e-13
Identities = 45/152 (29%), Positives = 87/152 (56%), Gaps = 3/152 (1%)
Query: 2 IKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKK 61
IKLL+ ++DG LT+G +Y + EI +++VKD +G++L +K G ++ +I+ R K+
Sbjct: 7 IKLLVCNIDGCLTNGHIYVSGDQKEIISYDVKDAIGISLLKKSGIEVRLISERA--CSKQ 64
Query: 62 RMESLGVQF-VFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFD 120
+ +L + + V +K ++ +K++ L +E+A +G++ +D K LS P D
Sbjct: 65 TLSALKLDCKTEVSVSDKLATVDEWRKEMGLCWKEVAYLGNEVSDEECLKRVGLSAVPAD 124
Query: 121 AHPLLKSKAYKVLQNSGGKGAVREAIDYLLTL 152
A + + + SGG+GA+RE +++ L
Sbjct: 125 ACSGAQKAVGYICKCSGGRGAIREFAEHIFLL 156
>ref|XP_132934.1| (XM_132934) expressed sequence AW208911 [Mus musculus]
Length = 275
Score = 75.5 bits (184), Expect = 2e-13
Identities = 45/152 (29%), Positives = 87/152 (56%), Gaps = 3/152 (1%)
Query: 2 IKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKK 61
IKLL+ ++DG LT+G +Y + EI +++VKD +G++L +K G ++ +I+ R K+
Sbjct: 116 IKLLVCNIDGCLTNGHIYVSGDQKEIISYDVKDAIGISLLKKSGIEVRLISERA--CSKQ 173
Query: 62 RMESLGVQF-VFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFD 120
+ +L + + V +K ++ +K++ L +E+A +G++ +D K LS P D
Sbjct: 174 TLSALKLDCKTEVSVSDKLATVDEWRKEMGLCWKEVAYLGNEVSDEECLKRVGLSAVPAD 233
Query: 121 AHPLLKSKAYKVLQNSGGKGAVREAIDYLLTL 152
A + + + SGG+GA+RE +++ L
Sbjct: 234 ACSGAQKAVGYICKCSGGRGAIREFAEHIFLL 265
>emb|CAA06915.1| (AJ006215) CMP-N-acetylneuraminic acid synthetase [Mus musculus]
Length = 432
Score = 75.5 bits (184), Expect = 2e-13
Identities = 45/152 (29%), Positives = 87/152 (56%), Gaps = 3/152 (1%)
Query: 2 IKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKK 61
IKLL+ ++DG LT+G +Y + EI +++VKD +G++L +K G ++ +I+ R K+
Sbjct: 273 IKLLVCNIDGCLTNGHIYVSGDQKEIISYDVKDAIGISLLKKSGIEVRLISERA--CSKQ 330
Query: 62 RMESLGVQF-VFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFD 120
+ +L + + V +K ++ +K++ L +E+A +G++ +D K LS P D
Sbjct: 331 TLSALKLDCKTEVSVSDKLATVDEWRKEMGLCWKEVAYLGNEVSDEECLKRVGLSAVPAD 390
Query: 121 AHPLLKSKAYKVLQNSGGKGAVREAIDYLLTL 152
A + + + SGG+GA+RE +++ L
Sbjct: 391 ACSGAQKAVGYICKCSGGRGAIREFAEHIFLL 422
>gb|AAH31500.1| (BC031500) cytidine monophospho-N-acetylneuraminic acid synthetase
[Mus musculus]
Length = 432
Score = 75.5 bits (184), Expect = 2e-13
Identities = 45/152 (29%), Positives = 87/152 (56%), Gaps = 3/152 (1%)
Query: 2 IKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKK 61
IKLL+ ++DG LT+G +Y + EI +++VKD +G++L +K G ++ +I+ R K+
Sbjct: 273 IKLLVCNIDGCLTNGHIYVSGDQKEIISYDVKDAIGISLLKKSGIEVRLISERA--CSKQ 330
Query: 62 RMESLGVQF-VFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFD 120
+ +L + + V +K ++ +K++ L +E+A +G++ +D K LS P D
Sbjct: 331 TLSALKLDCKTEVSVSDKLATVDEWRKEMGLCWKEVAYLGNEVSDEECLKRVGLSAVPAD 390
Query: 121 AHPLLKSKAYKVLQNSGGKGAVREAIDYLLTL 152
A + + + SGG+GA+RE +++ L
Sbjct: 391 ACSGAQKAVGYICKCSGGRGAIREFAEHIFLL 422
>gb|AAA57999.1| (U18997) ORF_o131 [Escherichia coli]
Length = 131
Score = 72.8 bits (177), Expect = 1e-12
Identities = 37/91 (40%), Positives = 56/91 (60%)
Query: 2 IKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKK 61
I+LL+LDVDG L+DG +Y N E+KAFNV+DG G+ ++AIITGR + +V+
Sbjct: 26 IRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVED 85
Query: 62 RMESLGVQFVFMGVENKNTVIERLKKDLQLS 92
R +LG+ ++ G NK L + L ++
Sbjct: 86 RCATLGITHLYQGQSNKLIAFSDLLEKLAIA 116
>ref|NP_629033.1| (NC_003888) putative transferase [Streptomyces coelicolor A3(2)]
emb|CAC33045.1| (AL589164) putative transferase [Streptomyces coelicolor A3(2)]
Length = 424
Score = 68.2 bits (165), Expect = 3e-11
Identities = 43/149 (28%), Positives = 75/149 (49%), Gaps = 1/149 (0%)
Query: 2 IKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKK 61
I ++LD DGT TD + D + E + + DGLG+ ++ G + I++ + +V
Sbjct: 256 IDAVVLDFDGTQTDDRVLIDTDGREFVSVHRGDGLGIAALRRSGLTMLILSTEVNPVVAA 315
Query: 62 RMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDA 121
R L + V G++ K+ +++ ++ ++ + + VG+D NDL F A A
Sbjct: 316 RARKLKLP-VLHGIDRKDLALKQWCEEQGIAPERVLYVGNDVNDLPCFALVGWPVAVASA 374
Query: 122 HPLLKSKAYKVLQNSGGKGAVREAIDYLL 150
H ++ A V GG+GAVRE +LL
Sbjct: 375 HDAVRGAARAVTTVPGGEGAVREIAAWLL 403
>dbj|BAB47150.1| (AB027414) CMP-sialic acid synthetase [Oncorhynchus mykiss]
Length = 432
Score = 66.2 bits (160), Expect = 1e-10
Identities = 43/157 (27%), Positives = 82/157 (51%), Gaps = 5/157 (3%)
Query: 1 MIKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVK 60
+++LLL +V G LTDG + + E+ + N +D +G+ + Q+ G ++ +I+ ++ K
Sbjct: 260 VVRLLLCNVSGCLTDGRVLISVSGEEMVSVNTRDTMGIRMLQREGVEVILISSSEDLLTK 319
Query: 61 KRMESL----GVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSF 116
++L G + +G + + VI + D L +E+A +G+D D+ LS
Sbjct: 320 ALADNLSQRTGCEVRQLGKDIQGEVI-AMMDDKDLDWKEVAYMGNDAPDVDCLNLAGLSA 378
Query: 117 APFDAHPLLKSKAYKVLQNSGGKGAVREAIDYLLTLE 153
P DA + + A ++ G GAVRE +++L L+
Sbjct: 379 VPRDAPVVAINAAKYSCHSAAGLGAVREFSEHILLLK 415
>ref|NP_658103.1| (NC_003995) Trehalose_PPase, Trehalose-phosphatase [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 261
Score = 55.8 bits (133), Expect = 2e-07
Identities = 23/59 (38%), Positives = 38/59 (63%)
Query: 77 NKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDAHPLLKSKAYKVLQN 135
+K + + RL + LQ+ A E+AC+GD +ND+ MF+ SF AHP +K KA ++++
Sbjct: 191 SKGSALRRLMEHLQIEANEVACIGDSFNDISMFEVTLHSFTLHHAHPYVKEKANHIVRS 249
>gb|AAA58000.1| (U18997) ORF_o69 [Escherichia coli]
Length = 69
Score = 54.3 bits (129), Expect = 5e-07
Identities = 31/64 (48%), Positives = 39/64 (60%)
Query: 96 IACVGDDYNDLGMFKACALSFAPFDAHPLLKSKAYKVLQNSGGKGAVREAIDYLLTLEGL 155
+A VGDD D + + LS A DAHPLL +A V + +GG+GAVRE D LL +G
Sbjct: 1 MAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGK 60
Query: 156 QDEA 159
DEA
Sbjct: 61 LDEA 64
>ref|NP_658091.1| (NC_003995) Hydrolase, haloacid dehalogenase-like hydrolase
[Bacillus anthracis A2012] [Bacillus anthracis str.
A2012]
Length = 268
Score = 49.3 bits (116), Expect = 2e-05
Identities = 25/74 (33%), Positives = 42/74 (55%), Gaps = 6/74 (8%)
Query: 77 NKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDAHPLLKSKAYKVLQNS 136
+K + I L K+ QL +E+AC+GD YND+ MF SFA A +K A+ V+
Sbjct: 191 SKGSAISVLLKEFQLQPEEVACIGDSYNDIPMFSLTPHSFAMAQADDAVKEHAHYVV--- 247
Query: 137 GGKGAVREAIDYLL 150
V++A+++++
Sbjct: 248 ---NTVKDAVNHVI 258
>ref|NP_248603.1| (NC_000909) phosphoserine phosphatase (serB) [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
sp|Q58989|SERB_METJA Putative phosphoserine phosphatase (PSP) (O-phosphoserine
phosphohydrolase) (PSPase)
pir||A64499 phosphoserine phosphatase (EC 3.1.3.3) - Methanococcus jannaschii
pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
pdb|1F5S|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
gb|AAB99612.1| (U67599) phosphoserine phosphatase (serB) [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
Length = 211
Score = 47.4 bits (111), Expect = 6e-05
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 24/124 (19%)
Query: 45 GKKIAIITGRTSIMVKKRMESLGVQFVFMG------------------VEN-KNTVIERL 85
G +A+++G I V K E LG+ + F EN K ++E++
Sbjct: 92 GYVVAVVSGGFDIAVNKIKEKLGLDYAFANRLIVKDGKLTGDVEGEVLKENAKGEILEKI 151
Query: 86 KKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDAHPLLKSKAYKVLQNSGGKGAVREA 145
K ++ ++ VGD ND+ MFK L A F A P+LK KA ++ K +RE
Sbjct: 152 AKIEGINLEDTVAVGDGANDISMFKKAGLKIA-FCAKPILKEKADICIE----KRDLREI 206
Query: 146 IDYL 149
+ Y+
Sbjct: 207 LKYI 210
>pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
pdb|1J97|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
Length = 211
Score = 47.4 bits (111), Expect = 6e-05
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 24/124 (19%)
Query: 45 GKKIAIITGRTSIMVKKRMESLGVQFVFMG------------------VEN-KNTVIERL 85
G +A+++G I V K E LG+ + F EN K ++E++
Sbjct: 92 GYVVAVVSGGFDIAVNKIKEKLGLDYAFANRLIVKDGKLTGDVEGEVLKENAKGEILEKI 151
Query: 86 KKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDAHPLLKSKAYKVLQNSGGKGAVREA 145
K ++ ++ VGD ND+ MFK L A F A P+LK KA ++ K +RE
Sbjct: 152 AKIEGINLEDTVAVGDGANDISMFKKAGLKIA-FCAKPILKEKADICIE----KRDLREI 206
Query: 146 IDYL 149
+ Y+
Sbjct: 207 LKYI 210
>ref|NP_579148.1| (NC_003413) hypothetical protein [Pyrococcus furiosus DSM 3638]
gb|AAL81543.1| (AE010245) hypothetical protein [Pyrococcus furiosus DSM 3638]
Length = 231
Score = 46.2 bits (108), Expect = 1e-04
Identities = 30/74 (40%), Positives = 40/74 (53%), Gaps = 1/74 (1%)
Query: 77 NKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDAHPLLKSKAYKVLQNS 136
NK + IE+ + L L+ +E+A VGD NDL FK A A +LK A + QN
Sbjct: 153 NKGSGIEKACELLGLNPKEVAHVGDGENDLDAFKVVGYRIAVAQAPKILKENADYITQNE 212
Query: 137 GGKGAVREAIDYLL 150
GKG EAI ++L
Sbjct: 213 YGKGGA-EAIYHIL 225
>ref|NP_281475.1| (NC_002163) putative phosphoserine phosphatase [Campylobacter
jejuni]
pir||H81446 probable phosphoserine phosphatase (EC 3.1.3.3) Cj0282c [imported]
- Campylobacter jejuni (strain NCTC 11168)
emb|CAB72749.1| (AL139074) putative phosphoserine phosphatase [Campylobacter
jejuni]
Length = 207
Score = 45.4 bits (106), Expect = 2e-04
Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 20 FDENFHE-IKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKKRMESLGVQFVFMGVENK 78
F FHE I K G+ + L K I+TG +G + +F +K
Sbjct: 95 FSGGFHEGINPAMQKLGINLGFANYLHHKNDILTGL-----------VGGEMMFSN--SK 141
Query: 79 NTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDAHPLLKSKA 129
+++RLK L L E+ CVGD NDL MF L A F A +L+S+A
Sbjct: 142 GLMLQRLKSFLNLKTDEVMCVGDGANDLAMFNESGLKIA-FCAKEILRSQA 191
>sp|P43051|YUPP_MYCHO Hypothetical 31.6 kDa protein in UPP 3'region
pir||S42199 hypothetical protein - Mycoplasma hominis (SGC3)
pir||S72524 hypothetical protein - Mycoplasma hominis (SGC3)
emb|CAA81648.1| (Z27121) unknown [Mycoplasma hominis]
Length = 282
Score = 45.1 bits (105), Expect = 3e-04
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 77 NKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDAHPLLKSKAYKVLQNS 136
+K VI + + + + +GD YNDL M+ + +P +A PL+K + V++ +
Sbjct: 210 DKGKVISLIMRYYNIDIDDTVAMGDSYNDLSMYNVANVCVSPANAEPLIKKMSTVVMKQT 269
Query: 137 GGKGAVREAIDY 148
+GAV ID+
Sbjct: 270 NKEGAVGYFIDH 281
>pdb|1L7M|B Chain B, High Resolution Liganded Structure Of Phosphoserine
Phosphatase (Pi Complex)
pdb|1L7M|A Chain A, High Resolution Liganded Structure Of Phosphoserine
Phosphatase (Pi Complex)
Length = 211
Score = 45.1 bits (105), Expect = 3e-04
Identities = 35/124 (28%), Positives = 56/124 (44%), Gaps = 24/124 (19%)
Query: 45 GKKIAIITGRTSIMVKKRMESLGVQFVFMG------------------VEN-KNTVIERL 85
G +A+++G I V K E LG+ + F EN K ++E++
Sbjct: 92 GYVVAVVSGGFDIAVNKIKEKLGLDYAFANRLIVKDGKLTGDVEGEVLKENAKGEILEKI 151
Query: 86 KKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDAHPLLKSKAYKVLQNSGGKGAVREA 145
K ++ ++ VGD ND+ FK L A F A P+LK KA ++ K +RE
Sbjct: 152 AKIEGINLEDTVAVGDGANDISXFKKAGLKIA-FCAKPILKEKADICIE----KRDLREI 206
Query: 146 IDYL 149
+ Y+
Sbjct: 207 LKYI 210
>ref|NP_618426.1| (NC_003552) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM06906.1| (AE011063) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 226
Score = 44.3 bits (103), Expect = 5e-04
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 77 NKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDAHPLLKSKAYKVLQNS 136
NK + + +L + + L A++ +GD ND+ MF+A A + +K A V + S
Sbjct: 149 NKGSGLRKLAEIMGLEAEDFVAIGDSENDIEMFEAAGFGIAVANGDERIKEAANYVTEAS 208
Query: 137 GGKGAVREAIDYL 149
G GAV EAI++L
Sbjct: 209 YGDGAV-EAIEFL 220
>ref|NP_276738.1| (NC_000916) phosphoserine phosphatase [Methanothermobacter
thermautotrophicus] [Methanothermobacter
thermautotrophicus str. Delta H]
pir||C69084 phosphoserine phosphatase - Methanobacterium thermoautotrophicum
(strain Delta H)
gb|AAB86099.1| (AE000921) phosphoserine phosphatase [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 495
Score = 43.1 bits (100), Expect = 0.001
Identities = 34/115 (29%), Positives = 58/115 (49%), Gaps = 20/115 (17%)
Query: 39 TLWQKLGKKIAIITGRTSIMVKKRMESLGVQFVFM-------GV---ENKNTVIERLKKD 88
TL +K G +A+I+G ++ + E LG+ ++F G+ E ++E+ K D
Sbjct: 88 TLKEK-GYLVAVISGSFDLVAEPVKEKLGIDYLFCNRLHEEDGILTGEVSGPLVEKSKYD 146
Query: 89 LQ--------LSAQEIACVGDDYNDLGMFKACALSFAPFDAHPLLKSKAYKVLQN 135
+ +S +E VGD ND+ M +A L A F+A P L+ KA V+++
Sbjct: 147 VLCGILEKEGISPRECVAVGDGANDISMIEAARLGIA-FNAKPALRKKADAVVED 200
>ref|NP_458515.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
emb|CAD09201.1| (AL627282) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 287
Score = 42.7 bits (99), Expect = 0.001
Identities = 25/76 (32%), Positives = 42/76 (54%), Gaps = 1/76 (1%)
Query: 77 NKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDAHPLLKSKAYKVLQNS 136
NK +IE+L L +S+ ++ +GD ND+ MF A +S A +A +K +A V +
Sbjct: 194 NKGCIIEQLIHYLNISSDKVVVIGDQQNDVSMFAAAGISIAMGNAPDAVKRQADYVTATN 253
Query: 137 GGKGAVREAIDYLLTL 152
+G V A+++L L
Sbjct: 254 DEEGIV-HALEWLRCL 268
>ref|NP_069280.1| (NC_000917) conserved hypothetical protein [Archaeoglobus fulgidus]
pir||D69305 conserved hypothetical protein AF0444 - Archaeoglobus fulgidus
gb|AAB90791.1| (AE001074) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 223
Score = 42.7 bits (99), Expect = 0.001
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 60 KKRMESLGVQFVFMGVE--------NKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKA 111
+K +E +GV+ V G +K ++ + + L +S+ E A +GD ND+ MF+
Sbjct: 123 RKLIEGMGVKLVDSGFAYHIMDADVSKGKALKFVAERLGISSAEFAVIGDSENDIDMFRV 182
Query: 112 CALSFAPFDAHPLLKSKAYKVLQNSGGKGAVREAIDYL 149
A +A LK A V + G+G V EA+ +L
Sbjct: 183 AGFGIAVANADERLKEYADLVTPSPDGEGVV-EALQFL 219
>ref|NP_126418.1| (NC_000868) hypothetical protein [Pyrococcus abyssi]
pir||H75116 hypothetical protein PAB2394 - Pyrococcus abyssi (strain Orsay)
emb|CAB49649.1| (AJ248285) hypothetical protein [Pyrococcus abyssi]
Length = 233
Score = 42.7 bits (99), Expect = 0.001
Identities = 28/81 (34%), Positives = 40/81 (48%), Gaps = 1/81 (1%)
Query: 77 NKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDAHPLLKSKAYKVLQNS 136
NK IE+ + L + +E+A +GD NDL FK A A +LK A V +
Sbjct: 153 NKGAGIEKACELLGIKPREVAHIGDGENDLDAFKVVGYRIAIAQAPDVLKENADYVTEKE 212
Query: 137 GGKGAVREAIDYLLTLEGLQD 157
G+G EAI ++L + G D
Sbjct: 213 YGEGGA-EAIFHVLRVSGYMD 232
>ref|NP_562228.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB81018.1| (AP003190) conserved hypothetical protein [Clostridium perfringens]
Length = 277
Score = 42.0 bits (97), Expect = 0.003
Identities = 20/74 (27%), Positives = 39/74 (52%)
Query: 77 NKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDAHPLLKSKAYKVLQNS 136
+K ++ L ++ ++ +EI C+GD+ NDL M L A +A LK KA + +++
Sbjct: 201 SKGRAVKALAEEYKIKREEIICIGDNENDLSMITYAGLGVAMGNAIDSLKEKADYITESN 260
Query: 137 GGKGAVREAIDYLL 150
G + +++L
Sbjct: 261 DKNGVAKVIYEFVL 274
>ref|NP_253647.1| (NC_002516) probable phosphoserine phosphatase [Pseudomonas
aeruginosa]
pir||C83025 probable phosphoserine phosphatase PA4960 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG08345.1|AE004909_1 (AE004909) probable phosphoserine phosphatase [Pseudomonas
aeruginosa]
Length = 429
Score = 41.6 bits (96), Expect = 0.003
Identities = 35/135 (25%), Positives = 56/135 (40%), Gaps = 28/135 (20%)
Query: 42 QKLGKKIAIITGRTSIMVKKRMESLGVQFVF-------------------MGVENKNTVI 82
++LG K AI++G + ++ LG+ +VF + + K ++
Sbjct: 299 KRLGYKTAILSGGFTYFARQLQAKLGIDYVFANELQIVDGKVTGVAVEPIVDAQRKADLL 358
Query: 83 ERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDAHPLLKSKAYKVLQNSGGKGAV 142
L LS ++ VGD NDL M L A F A PL+K A + + G
Sbjct: 359 RELAAKEGLSLEQTIAVGDGANDLPMLGLAGLGVA-FRAKPLVKQSAKQAISTLG----- 412
Query: 143 REAIDYLLTLEGLQD 157
+D +L L G +D
Sbjct: 413 ---LDGILYLLGYRD 424
>ref|NP_143292.1| (NC_000961) hypothetical protein [Pyrococcus horikoshii]
pir||G71015 hypothetical protein PH1421 - Pyrococcus horikoshii
dbj|BAA30527.1| (AP000006) 231aa long hypothetical protein [Pyrococcus horikoshii]
Length = 231
Score = 41.6 bits (96), Expect = 0.003
Identities = 27/74 (36%), Positives = 38/74 (50%), Gaps = 1/74 (1%)
Query: 77 NKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDAHPLLKSKAYKVLQNS 136
NK + IE+ + L + +E+A VGD NDL FK A A +LK A V +
Sbjct: 153 NKGSGIEKASEFLGIKPKEVAHVGDGENDLDAFKVVGYKVAVAQAPKILKENADYVTKKE 212
Query: 137 GGKGAVREAIDYLL 150
G+G EAI ++L
Sbjct: 213 YGEGGA-EAIYHIL 225
>ref|NP_266761.1| (NC_002662) phosphoserine phosphatase (EC 3.1.3.3) [Lactococcus
lactis subsp. lactis]
gb|AAK04703.1|AE006293_9 (AE006293) phosphoserine phosphatase (EC 3.1.3.3) [Lactococcus
lactis subsp. lactis]
Length = 216
Score = 41.2 bits (95), Expect = 0.004
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 21/127 (16%)
Query: 20 FDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKKRMESLGVQFVF---MGVE 76
FD+ + EI GL TL K G K+ +++G +V K L + +VF + VE
Sbjct: 67 FDDVYKEIHLTKGATGLIETLHAK-GWKVGLVSGGFHEIVDKIARDLKIDYVFANRLSVE 125
Query: 77 N-------------KNTVIERLKK---DLQLSAQEIACVGDDYNDLGMFKACALSFAPFD 120
N K+ ++RLK+ + +L+ E+ VGD ND+ M + A F
Sbjct: 126 NGHLTGKTHGTVVDKDFKVDRLKQWANENKLNLSEVIAVGDGANDIPMLNTAGIGIA-FC 184
Query: 121 AHPLLKS 127
A P +K+
Sbjct: 185 AKPAVKA 191
>ref|NP_341661.1| (NC_002754) Conserved hypothetical protein [Sulfolobus
solfataricus]
pir||S75394 hypothetical protein c04028 - Sulfolobus solfataricus
emb|CAA69557.1| (Y08257) orf c04028 [Sulfolobus solfataricus]
gb|AAK40451.1| (AE006649) Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 228
Score = 41.2 bits (95), Expect = 0.004
Identities = 25/73 (34%), Positives = 38/73 (51%), Gaps = 1/73 (1%)
Query: 78 KNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDAHPLLKSKAYKVLQNSG 137
K +E+L + L L +++A +GD D+ +F+ A +A LK A + N
Sbjct: 149 KRIGVEKLLQLLGLKKEDVAAIGDSSTDIELFQQVGFKVAVGNADDELKDIADYITSNKS 208
Query: 138 GKGAVREAIDYLL 150
GKG VRE +D LL
Sbjct: 209 GKG-VREFVDKLL 220
>ref|NP_143712.1| (NC_000961) phosphoserine phosphatase [Pyrococcus horikoshii]
pir||H71201 probable phosphoserine phosphatase - Pyrococcus horikoshii
Length = 210
Score = 40.8 bits (94), Expect = 0.006
Identities = 35/121 (28%), Positives = 53/121 (42%), Gaps = 22/121 (18%)
Query: 21 DENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKKRMESLGVQFVFMG------ 74
+E F E+ + + L L +K G K AIITG + KK E L +V+
Sbjct: 68 EEVFKEVSLKDYAEELFRWLKEK-GFKTAIITGGLMCLAKKVAEKLNPDYVYANELVFNE 126
Query: 75 -------------VENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDA 121
+NK ++ERLK++L + VGD NDL MF+ +S + +
Sbjct: 127 KGEITGDVIVRVTFDNKGEILERLKRELNPTL--TVAVGDWKNDLPMFEVADISISLGED 184
Query: 122 H 122
H
Sbjct: 185 H 185
>ref|NP_561440.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB80230.1| (AP003187) conserved hypothetical protein [Clostridium perfringens]
Length = 264
Score = 40.4 bits (93), Expect = 0.007
Identities = 23/66 (34%), Positives = 33/66 (49%)
Query: 82 IERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDAHPLLKSKAYKVLQNSGGKGA 141
IE L K+L LS ++ GD ND+ MF+ A DAH L AYK +N +G
Sbjct: 195 IEHLIKELGLSDKDTYAFGDGENDIEMFQRVKYGIAMGDAHETLIPHAYKQTENVPNEGI 254
Query: 142 VREAID 147
+ ++
Sbjct: 255 YKALLE 260
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.321 0.140 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,467,339
Number of Sequences: 1026957
Number of extensions: 3786403
Number of successful extensions: 9258
Number of sequences better than 1.0e-02: 53
Number of HSP's better than 0.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 9193
Number of HSP's gapped (non-prelim): 62
length of query: 164
length of database: 324,149,939
effective HSP length: 112
effective length of query: 52
effective length of database: 209,130,755
effective search space: 10874799260
effective search space used: 10874799260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 92 (40.0 bits)