BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646186|ref|NP_208370.1| hypothetical protein
[Helicobacter pylori 26695]
         (142 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_208370.1|  (NC_000915) hypothetical protein [Helicoba...   278  7e-75
ref|NP_224204.1|  (NC_000921) putative [Helicobacter pylori ...   231  1e-60

>ref|NP_208370.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||C64717 hypothetical protein HP1579 - Helicobacter pylori (strain 26695)
 gb|AAD08624.1| (AE000655) H. pylori predicted coding region HP1579 [Helicobacter
           pylori 26695]
          Length = 142

 Score =  278 bits (711), Expect = 7e-75
 Identities = 142/142 (100%), Positives = 142/142 (100%)

Query: 1   MLKKLLFIALFLGFLRAEGEHYEIIVELSKAFLKAQEVLTTIHQAYKTCIETGHDRTQIR 60
           MLKKLLFIALFLGFLRAEGEHYEIIVELSKAFLKAQEVLTTIHQAYKTCIETGHDRTQIR
Sbjct: 1   MLKKLLFIALFLGFLRAEGEHYEIIVELSKAFLKAQEVLTTIHQAYKTCIETGHDRTQIR 60

Query: 61  LQSAFLENLSQTEQQFDDYFEKDFKSVEVLKTLLKNLQSLEKTSNKLACITPKNAKNFEI 120
           LQSAFLENLSQTEQQFDDYFEKDFKSVEVLKTLLKNLQSLEKTSNKLACITPKNAKNFEI
Sbjct: 61  LQSAFLENLSQTEQQFDDYFEKDFKSVEVLKTLLKNLQSLEKTSNKLACITPKNAKNFEI 120

Query: 121 LEGAITQIIDLEKQMDKFINKN 142
           LEGAITQIIDLEKQMDKFINKN
Sbjct: 121 LEGAITQIIDLEKQMDKFINKN 142



>ref|NP_224204.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||H71800 hypothetical protein jhp1486 - Helicobacter pylori (strain J99)
 gb|AAD07060.1| (AE001570) putative [Helicobacter pylori J99]
          Length = 140

 Score =  231 bits (588), Expect = 1e-60
 Identities = 119/140 (85%), Positives = 129/140 (92%), Gaps = 3/140 (2%)

Query: 1   MLKKLLFIALFLGFLRAEGEHYEIIVELSKAFLKAQEVLTTIHQAYKTCIETGHDRTQIR 60
           MLKKLL I+LFLGFLRAEGEHYEII ELSKAFLKA+EVLT I+   KTCIETGHDRTQIR
Sbjct: 1   MLKKLLLISLFLGFLRAEGEHYEIIAELSKAFLKAKEVLTAIN---KTCIETGHDRTQIR 57

Query: 61  LQSAFLENLSQTEQQFDDYFEKDFKSVEVLKTLLKNLQSLEKTSNKLACITPKNAKNFEI 120
           LQ+ FLENLSQTEQQFDDYFEKDFKSV VLKTLLK++QSLEKTSNKL C+ PKNAKNFEI
Sbjct: 58  LQNDFLENLSQTEQQFDDYFEKDFKSVGVLKTLLKDIQSLEKTSNKLVCVAPKNAKNFEI 117

Query: 121 LEGAITQIIDLEKQMDKFIN 140
           LEGAITQII LE+QM++FIN
Sbjct: 118 LEGAITQIIGLEEQMNQFIN 137



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.320    0.136    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,531,955
Number of Sequences: 1026957
Number of extensions: 2505286
Number of successful extensions: 10620
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10615
Number of HSP's gapped (non-prelim): 2
length of query: 142
length of database: 324,149,939
effective HSP length: 118
effective length of query: 24
effective length of database: 202,969,013
effective search space: 4871256312
effective search space used: 4871256312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 89 (38.9 bits)