BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646187|ref|NP_208371.1| hypothetical protein
[Helicobacter pylori 26695]
(220 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208371.1| (NC_000915) hypothetical protein [Helicoba... 450 e-126
ref|NP_224205.1| (NC_000921) putative [Helicobacter pylori ... 389 e-107
ref|NP_206823.1| (NC_000915) hypothetical protein [Helicoba... 51 1e-05
ref|NP_222741.1| (NC_000921) putative [Helicobacter pylori ... 47 2e-04
>ref|NP_208371.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64717 hypothetical protein HP1580 - Helicobacter pylori (strain 26695)
gb|AAD08625.1| (AE000655) H. pylori predicted coding region HP1580 [Helicobacter
pylori 26695]
Length = 220
Score = 450 bits (1157), Expect = e-126
Identities = 220/220 (100%), Positives = 220/220 (100%)
Query: 1 MLFNGLCLFEQASLCFRKASVSMKKLKGLFLILLLWVYPLRSEPINEGAYILEEIGDVLR 60
MLFNGLCLFEQASLCFRKASVSMKKLKGLFLILLLWVYPLRSEPINEGAYILEEIGDVLR
Sbjct: 1 MLFNGLCLFEQASLCFRKASVSMKKLKGLFLILLLWVYPLRSEPINEGAYILEEIGDVLR 60
Query: 61 FLPIFVGTVSLAMRDYRGLGELAVGTLVTQGVIYGLKGAFSNAHKDGARVEFAKRPCCNS 120
FLPIFVGTVSLAMRDYRGLGELAVGTLVTQGVIYGLKGAFSNAHKDGARVEFAKRPCCNS
Sbjct: 61 FLPIFVGTVSLAMRDYRGLGELAVGTLVTQGVIYGLKGAFSNAHKDGARVEFAKRPCCNS 120
Query: 121 WRGMPSGHAGGVFSAAGFVYYRYGWKPALPVIALAILTDASRVVARQHTILQVTIGSLIA 180
WRGMPSGHAGGVFSAAGFVYYRYGWKPALPVIALAILTDASRVVARQHTILQVTIGSLIA
Sbjct: 121 WRGMPSGHAGGVFSAAGFVYYRYGWKPALPVIALAILTDASRVVARQHTILQVTIGSLIA 180
Query: 181 WGFAYLFTSRYKPKQWMLYPEISSDFKGSSRYGVSFSYQW 220
WGFAYLFTSRYKPKQWMLYPEISSDFKGSSRYGVSFSYQW
Sbjct: 181 WGFAYLFTSRYKPKQWMLYPEISSDFKGSSRYGVSFSYQW 220
>ref|NP_224205.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71801 hypothetical protein jhp1487 - Helicobacter pylori (strain J99)
gb|AAD07061.1| (AE001570) putative [Helicobacter pylori J99]
Length = 198
Score = 389 bits (999), Expect = e-107
Identities = 189/198 (95%), Positives = 191/198 (96%)
Query: 23 MKKLKGLFLILLLWVYPLRSEPINEGAYILEEIGDVLRFLPIFVGTVSLAMRDYRGLGEL 82
MKKLKGLFL LLLWVYPL+SEPINEGAYILEEIGDVLRFLPIFVGTVSLAMRDYRGLGEL
Sbjct: 1 MKKLKGLFLSLLLWVYPLKSEPINEGAYILEEIGDVLRFLPIFVGTVSLAMRDYRGLGEL 60
Query: 83 AVGTLVTQGVIYGLKGAFSNAHKDGARVEFAKRPCCNSWRGMPSGHAGGVFSAAGFVYYR 142
AVGTLVTQGVIYGLKGAFS AHKDGARV FAKRPCCNSWRGMPSGHAGG FSAAGFVYYR
Sbjct: 61 AVGTLVTQGVIYGLKGAFSTAHKDGARVGFAKRPCCNSWRGMPSGHAGGAFSAAGFVYYR 120
Query: 143 YGWKPALPVIALAILTDASRVVARQHTILQVTIGSLIAWGFAYLFTSRYKPKQWMLYPEI 202
YGWKPALPVIALAILTD SRVVA QHTILQVTIGSLIAWGFAYLFTSRYKPK+WMLYPEI
Sbjct: 121 YGWKPALPVIALAILTDTSRVVAGQHTILQVTIGSLIAWGFAYLFTSRYKPKRWMLYPEI 180
Query: 203 SSDFKGSSRYGVSFSYQW 220
SSDFKGSSRYGV FSYQW
Sbjct: 181 SSDFKGSSRYGVGFSYQW 198
>ref|NP_206823.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||E64522 hypothetical protein HP0021 - Helicobacter pylori (strain 26695)
gb|AAD07094.1| (AE000524) H. pylori predicted coding region HP0021 [Helicobacter
pylori 26695]
Length = 190
Score = 50.8 bits (120), Expect = 1e-05
Identities = 41/135 (30%), Positives = 65/135 (47%), Gaps = 4/135 (2%)
Query: 60 RFLPIFVGT-VSLAMRDYRGLGELAVGTLVTQGVIYGLKGAFSNAHKDGARVEFAKRPCC 118
RF+P + + L RD GL ++A ++ T + + K A ++ + R+ +RP
Sbjct: 59 RFIPTILSVAIPLIQRDAVGLFQVANASIATTLLTHTTKRALNHVTINDQRL--GERPYG 116
Query: 119 NSWRGMPSGHAGGVFSAAGFVYYRYGWKPALPVIALAILTDASRVVARQHTILQVTIGSL 178
++ MPSGH+ V A F+ RY +K ++ L LT +R+ HTI V G
Sbjct: 117 GNFN-MPSGHSSMVGLAVAFLMRRYSFKKYFWLLPLVPLTMLARIYLDMHTIGAVLTGLG 175
Query: 179 IAWGFAYLFTSRYKP 193
+ LFTS KP
Sbjct: 176 VGMLCVSLFTSPKKP 190
>ref|NP_222741.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71985 hypothetical protein jhp0019 - Helicobacter pylori (strain J99)
gb|AAD05601.1| (AE001441) putative [Helicobacter pylori J99]
Length = 191
Score = 46.6 bits (109), Expect = 2e-04
Identities = 40/131 (30%), Positives = 62/131 (46%), Gaps = 4/131 (3%)
Query: 60 RFLPIFVGT-VSLAMRDYRGLGELAVGTLVTQGVIYGLKGAFSNAHKDGARVEFAKRPCC 118
RF+P + + L RD GL ++A ++ T + + K A ++ + R+ +RP
Sbjct: 59 RFIPTILSVAIPLIQRDAVGLFQVANASIATTFLTHATKRALNHVTINDQRL--GERPYG 116
Query: 119 NSWRGMPSGHAGGVFSAAGFVYYRYGWKPALPVIALAILTDASRVVARQHTILQVTIGSL 178
++ MPSGH+ V A F+ RY K L ++ L LT +R+ HTI V G
Sbjct: 117 GNFN-MPSGHSSMVGLAVAFLMRRYSVKKYLWLLPLIPLTMLARIYLDMHTIGAVLAGLG 175
Query: 179 IAWGFAYLFTS 189
LFTS
Sbjct: 176 TGMLCVGLFTS 186
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.326 0.142 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,863,315
Number of Sequences: 1026957
Number of extensions: 5392498
Number of successful extensions: 14724
Number of sequences better than 1.0e-02: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14722
Number of HSP's gapped (non-prelim): 4
length of query: 220
length of database: 324,149,939
effective HSP length: 117
effective length of query: 103
effective length of database: 203,995,970
effective search space: 21011584910
effective search space used: 21011584910
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 95 (41.2 bits)