BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644789|ref|NP_206959.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(306 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206959.1| (NC_000915) conserved hypothetical secrete... 642 0.0
ref|NP_222869.1| (NC_000921) putative [Helicobacter pylori ... 581 e-165
ref|NP_207889.1| (NC_000915) conserved hypothetical secrete... 217 1e-55
ref|NP_223741.1| (NC_000921) putative [Helicobacter pylori ... 214 1e-54
ref|NP_223037.1| (NC_000921) putative [Helicobacter pylori ... 207 9e-53
gb|AAL47062.1|AF326614_1 (AF326614) JHP318-like protein [He... 188 7e-47
ref|NP_207009.1| (NC_000915) conserved hypothetical secrete... 169 3e-41
gb|AAL47059.1|AF326610_1 (AF326610) JHP318-like protein [He... 169 5e-41
ref|NP_222918.1| (NC_000921) putative [Helicobacter pylori ... 167 1e-40
gb|AAB63298.1| (AF008565) Orf2 [Helicobacter pylori] 166 3e-40
gb|AAC24210.1| (AF053708) cysteine-rich protein; HcpA [Heli... 166 3e-40
ref|NP_207033.1| (NC_000915) conserved hypothetical secrete... 164 1e-39
ref|NP_222941.1| (NC_000921) putative [Helicobacter pylori ... 161 1e-38
gb|AAL47058.1|AF326608_1 (AF326608) JHP318-like protein [He... 146 2e-34
ref|NP_223289.1| (NC_000921) putative [Helicobacter pylori ... 137 2e-31
gb|AAM66156.1|AF326634_1 (AF326634) JHP1437-like protein [H... 132 5e-30
gb|AAM66150.1|AF326629_1 (AF326629) JHP1437-like protein [H... 131 8e-30
gb|AAM66155.1|AF326633_1 (AF326633) JHP1437-like protein [H... 125 5e-28
gb|AAM66149.1|AF326628_1 (AF326628) JHP1437-like protein [H... 125 8e-28
gb|AAL47060.1|AF326611_1 (AF326611) JHP318-like protein [He... 122 5e-27
ref|NP_459646.1| (NC_003197) putative TPR repeat protein [S... 113 2e-24
ref|NP_224155.1| (NC_000921) putative [Helicobacter pylori ... 100 2e-20
ref|NP_586349.1| (NC_003237) similarity to SKT5 PROTEIN [En... 99 6e-20
ref|NP_207422.1| (NC_000915) hypothetical protein [Helicoba... 98 1e-19
gb|AAM66148.1|AF326627_1 (AF326627) JHP1437-like protein [H... 95 1e-18
gb|AAM66151.1|AF326630_1 (AF326630) JHP1437-like protein [H... 94 2e-18
ref|NP_415177.1| (NC_000913) orf, hypothetical protein [Esc... 92 6e-18
sp|P77234|YBEQ_ECOLI Hypothetical protein ybeQ 92 6e-18
pir||T46587 hypothetical protein [imported] - Vogesella ind... 91 1e-17
ref|NP_223762.1| (NC_000921) putative [Helicobacter pylori ... 91 2e-17
gb|AAB47276.1| (U86608) 29 kDa protein [Helicobacter pylori] 90 4e-17
ref|NP_207908.1| (NC_000915) conserved hypothetical secrete... 89 8e-17
ref|NP_286370.1| (NC_002655) ybeQ gene product [Escherichia... 88 1e-16
ref|NP_207134.1| (NC_000915) hypothetical protein [Helicoba... 86 5e-16
gb|AAL47063.1|AF326616_1 (AF326616) JHP1024-like protein [H... 84 2e-15
ref|NP_281603.1| (NC_002163) putative periplasmic protein [... 83 3e-15
emb|CAB65792.2| (AL109657) dJ842G6.2 (novel protein imilar ... 81 2e-14
ref|NP_460716.1| (NC_003197) putative TPR repeat protein [S... 80 3e-14
ref|NP_246550.1| (NC_002663) unknown [Pasteurella multocida... 79 6e-14
gb|AAD05210.1| (AF063095) SELlL [Mus musculus] >gi|20073079... 78 1e-13
ref|XP_127076.1| (XM_127076) similar to Sel-1 homolog precu... 78 1e-13
ref|NP_661851.1| (NC_002932) conserved hypothetical protein... 77 2e-13
ref|NP_005056.3| (NM_005065) sel-1 suppressor of lin-12-lik... 77 2e-13
gb|AAF29413.1|AF052059_1 (AF052059) SEL1L [Homo sapiens] >g... 77 2e-13
dbj|BAB12403.1| (AB048195) SEL1L [Mesocricetus auratus] 77 3e-13
gb|AAF01236.1|AF185288_1 (AF185288) immunoreactive protein ... 75 7e-13
ref|NP_455743.1| (NC_003198) putative secreted protein [Sal... 75 1e-12
gb|EAA06387.1| (AAAB01008846) agCP13101 [Anopheles gambiae ... 73 3e-12
gb|AAD41587.1|AF057704_3 (AF057704) enhanced entry protein ... 73 3e-12
ref|NP_564049.1| (NM_101684) expressed protein [Arabidopsis... 72 1e-11
gb|AAK64159.1| (AY039982) unknown protein [Arabidopsis thal... 71 1e-11
ref|XP_046437.2| (XM_046437) similar to dJ842G6.2 (novel pr... 69 5e-11
ref|NP_273467.1| (NC_003112) conserved hypothetical protein... 66 4e-10
gb|AAC37164.1| (L05770) putative regulatory protein PobS [A... 66 6e-10
ref|NP_651179.1| (NM_142922) BcDNA:LD23587 gene product [Dr... 65 9e-10
ref|NP_496487.1| (NM_064086) ZK20.4.p [Caenorhabditis elega... 64 2e-09
gb|AAH15313.1|AAH15313 (BC015313) hypothetical protein FLJ1... 62 8e-09
gb|AAF45339.1| (AE003066) CG13865 gene product [Drosophila ... 62 1e-08
ref|NP_075565.1| (NM_023077) hypothetical protein FLJ12439 ... 62 1e-08
ref|NP_405544.1| (NC_003143) putative exported protein [Yer... 61 2e-08
ref|XP_131544.1| (XM_131544) RIKEN cDNA 2010305A19 [Mus mus... 60 4e-08
dbj|BAB25716.1| (AK008518) data source:SPTR, source key:Q9H... 60 4e-08
ref|NP_103302.1| (NC_002678) unknown protein [Mesorhizobium... 59 5e-08
ref|NP_459434.1| (NC_003197) putative TPR repeat protein [S... 59 7e-08
ref|NP_284256.1| (NC_003116) hypothetical protein [Neisseri... 59 9e-08
ref|NP_455031.1| (NC_003198) probable secreted protein [Sal... 57 2e-07
ref|NP_459433.1| (NC_003197) putative periplasmic protein [... 57 2e-07
ref|NP_506144.1| (NM_073743) Yeast hypothetical gene L8167.... 57 3e-07
gb|AAC47112.1| (U50828) sel-1 gene product [Caenorhabditis ... 57 3e-07
gb|AAG30966.1|AC012396_2 (AC012396) hypothetical protein, 3... 57 3e-07
ref|NP_177498.1| (NM_106015) hypothetical protein [Arabidop... 57 3e-07
ref|NP_455035.1| (NC_003198) conserved hypothetical protein... 56 6e-07
ref|NP_102363.1| (NC_002678) hypothetical protein [Mesorhiz... 55 7e-07
ref|NP_245305.1| (NC_002663) unknown [Pasteurella multocida... 55 7e-07
ref|NP_460954.1| (NC_003197) putative TPR repeat protein [S... 55 1e-06
ref|NP_274346.1| (NC_003112) conserved hypothetical protein... 54 2e-06
ref|NP_420846.1| (NC_002696) conserved hypothetical protein... 53 4e-06
ref|NP_207316.1| (NC_000915) conserved hypothetical protein... 50 3e-05
gb|AAH30908.1| (BC030908) Unknown (protein for IMAGE:450426... 50 4e-05
ref|NP_283034.1| (NC_003116) hypothetical protein NMA0184 [... 50 4e-05
ref|XP_134130.1| (XM_134130) similar to Ank repeat containi... 50 4e-05
ref|NP_080554.1| (NM_026278) RIKEN cDNA 2310006J04 [Mus mus... 50 4e-05
gb|EAA00460.1| (AAAB01008986) agCP9334 [Anopheles gambiae s... 49 5e-05
ref|NP_223186.1| (NC_000921) putative [Helicobacter pylori ... 49 5e-05
ref|NP_286374.1| (NC_002655) orf, hypothetical protein [Esc... 49 9e-05
ref|NP_435252.1| (NC_003037) hypothetical protein [Sinorhiz... 48 1e-04
ref|NP_415180.1| (NC_000913) orf, hypothetical protein [Esc... 47 3e-04
ref|XP_003620.2| (XM_003620) similar to hypothetical protei... 46 5e-04
ref|NP_518145.1| (NC_003295) PUTATIVE SIGNAL PEPTIDE PROTEI... 46 5e-04
dbj|BAA92563.1| (AB037746) KIAA1325 protein [Homo sapiens] 46 5e-04
ref|NP_060879.1| (NM_018409) hypothetical protein DKFZp761O... 46 5e-04
ref|NP_592847.1| (NC_003424) similar to yeast protoplast re... 44 0.003
ref|NP_249051.1| (NC_002516) hypothetical protein [Pseudomo... 43 0.005
gb|AAC36055.1| (AF035820) gibberellin action negative regul... 43 0.005
ref|NP_643252.1| (NC_003919) conserved hypothetical protein... 43 0.005
emb|CAA76834.1| (Y17720) SPINDLY protein [Petunia x hybrida] 42 0.007
emb|CAC85168.1| (AJ312093) SPY protein [Lycopersicon escule... 42 0.007
ref|NP_187761.1| (NM_111987) spindly (gibberellin signal tr... 42 0.009
ref|NP_106249.1| (NC_002678) unknown protein [Mesorhizobium... 42 0.009
>ref|NP_206959.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
pir||H64539 conserved hypothetical secreted protein HP0160 - Helicobacter
pylori (strain 26695)
gb|AAD07230.1| (AE000537) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 306
Score = 642 bits (1657), Expect = 0.0
Identities = 306/306 (100%), Positives = 306/306 (100%)
Query: 1 MIKSWTKKWFLILFLMASCSSYLVATTGEKYFKMATQAFKRGDYHKAVAFYKRSCNLRVG 60
MIKSWTKKWFLILFLMASCSSYLVATTGEKYFKMATQAFKRGDYHKAVAFYKRSCNLRVG
Sbjct: 1 MIKSWTKKWFLILFLMASCSSYLVATTGEKYFKMATQAFKRGDYHKAVAFYKRSCNLRVG 60
Query: 61 VGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAI 120
VGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAI
Sbjct: 61 VGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAI 120
Query: 121 YYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRN 180
YYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRN
Sbjct: 121 YYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRN 180
Query: 181 AKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRG 240
AKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRG
Sbjct: 181 AKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRG 240
Query: 241 SGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGSCKVLEEVIGKKSDDLQDDAQND 300
SGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGSCKVLEEVIGKKSDDLQDDAQND
Sbjct: 241 SGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGSCKVLEEVIGKKSDDLQDDAQND 300
Query: 301 TQDDMQ 306
TQDDMQ
Sbjct: 301 TQDDMQ 306
>ref|NP_222869.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71968 hypothetical protein jhp0148 - Helicobacter pylori (strain J99)
gb|AAD05729.1| (AE001453) putative [Helicobacter pylori J99]
Length = 305
Score = 581 bits (1497), Expect = e-165
Identities = 276/306 (90%), Positives = 289/306 (94%), Gaps = 1/306 (0%)
Query: 1 MIKSWTKKWFLILFLMASCSSYLVATTGEKYFKMATQAFKRGDYHKAVAFYKRSCNLRVG 60
MIKSWTKKWFLILFLMASC +LVATTGEKYFKMA QA KRGDYH+AVAFYKRSCNLR+G
Sbjct: 1 MIKSWTKKWFLILFLMASCFGHLVATTGEKYFKMANQALKRGDYHRAVAFYKRSCNLRMG 60
Query: 61 VGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAI 120
VGCTSLGSMYE GDGVDQNI+KAVFYYRRGCNLRNHLACASLGSMYEDGDGVQK+ PKAI
Sbjct: 61 VGCTSLGSMYEYGDGVDQNISKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKDFPKAI 120
Query: 121 YYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRN 180
YYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKAL SKYACSLNYGISCNFVGYMY++
Sbjct: 121 YYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALSFSKYACSLNYGISCNFVGYMYKS 180
Query: 181 AKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRG 240
AKGV+KDLKKALANFKRGCHLKDGASCVSLGY+YE GMDVKQN EQALNLYKKGC LK G
Sbjct: 181 AKGVEKDLKKALANFKRGCHLKDGASCVSLGYLYEAGMDVKQNEEQALNLYKKGCSLKEG 240
Query: 241 SGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGSCKVLEEVIGKKSDDLQDDAQND 300
SGCHNVAVMYYTGKG PKDL+KA SYYKKGC LGFSGSCKVL EVIGK+SD+LQDDAQND
Sbjct: 241 SGCHNVAVMYYTGKGAPKDLEKATSYYKKGCALGFSGSCKVL-EVIGKESDNLQDDAQND 299
Query: 301 TQDDMQ 306
TQD +Q
Sbjct: 300 TQDSVQ 305
>ref|NP_207889.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
pir||B64657 conserved hypothetical secreted protein HP1098 - Helicobacter
pylori (strain 26695)
gb|AAD08141.1| (AE000616) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 290
Score = 217 bits (553), Expect = 1e-55
Identities = 106/286 (37%), Positives = 166/286 (57%), Gaps = 1/286 (0%)
Query: 1 MIKSWTKKWFLILFLMASCSSYLVATTGEKYFK-MATQAFKRGDYHKAVAFYKRSCNLRV 59
M+++ K +F +L L A C L+A K + +++K D+ +A +++++C+L+
Sbjct: 1 MLENVKKSFFRVLCLGALCLGGLMAEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKE 60
Query: 60 GVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKA 119
GC +LG +Y G GV++N+ KA +Y + C+L C LG++Y G GV +N KA
Sbjct: 61 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKA 120
Query: 120 IYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYR 179
+ YY + C LK C SLG +Y +G V +++ KA+ AC LN G C +G +Y
Sbjct: 121 LQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYD 180
Query: 180 NAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKR 239
+G KDLKKALA++ + C LKD C + G MY G +N ++AL Y K C L+
Sbjct: 181 AGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 240
Query: 240 GSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGSCKVLEEV 285
G GC N+ M Y G+GV ++ +AI +KKGC LG G+C +L+++
Sbjct: 241 GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILKQL 286
>ref|NP_223741.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71859 hypothetical protein jhp1024 - Helicobacter pylori (strain J99)
gb|AAD06595.1| (AE001530) putative [Helicobacter pylori J99]
Length = 290
Score = 214 bits (545), Expect = 1e-54
Identities = 105/286 (36%), Positives = 164/286 (56%), Gaps = 1/286 (0%)
Query: 1 MIKSWTKKWFLILFLMASCSSYLVATTGEKYFK-MATQAFKRGDYHKAVAFYKRSCNLRV 59
M+++ K F +L L A C L+A K + +++K D+ +A +++++C+L+
Sbjct: 1 MLENVKKSLFRVLCLGALCLGGLMAEQDPKELVGLGAKSYKEQDFTQAKKYFEKACDLKE 60
Query: 60 GVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKA 119
GC +LG +Y G GV++N+ KA +Y + C+L C LG++Y G GV +N KA
Sbjct: 61 NSGCFNLGVLYYQGHGVEKNLKKAASFYSKACDLNYSNGCHLLGNLYYSGQGVSQNTNKA 120
Query: 120 IYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYR 179
+ YY + C LK C SLG +Y +G V +++ KA+ AC LN G C +G +Y
Sbjct: 121 LQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYD 180
Query: 180 NAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKR 239
+G KDLKKALA++ + C LKD C + G MY G +N ++AL Y K C L+
Sbjct: 181 AGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAAKNFKEALARYSKACELEN 240
Query: 240 GSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGSCKVLEEV 285
G GC N+ M Y G+G ++ +AI +KKGC LG G+C +L+++
Sbjct: 241 GGGCFNLGAMQYNGEGATRNEKQAIENFKKGCKLGAKGACDILKQL 286
>ref|NP_223037.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71945 hypothetical protein jhp0318 - Helicobacter pylori (strain J99)
gb|AAD05894.1| (AE001468) putative [Helicobacter pylori J99]
Length = 251
Score = 207 bits (528), Expect = 9e-53
Identities = 102/251 (40%), Positives = 150/251 (59%), Gaps = 1/251 (0%)
Query: 34 MATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNL 93
M ++ K D+ +A +++++CNL G GC +LG +Y+DG GV++N+ KA Y + C L
Sbjct: 1 MGVKSNKAKDFIQAKKYFEKACNLNYGGGCGALGDLYDDGKGVEKNLIKAAQPYTKACEL 60
Query: 94 RNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYA 153
+ L C L S+Y G GV+KNL KA Y + C L GV C +LGF+Y G GV+++
Sbjct: 61 KEGLGCERLWSLYYYGRGVEKNLIKAAQYASKACDLNNGVGCKNLGFLYEYGEGVEKDLI 120
Query: 154 KALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYM 213
KA + AC LN G C+ +G++Y + KGV+K+L KA + + C L +G C +LG +
Sbjct: 121 KAAQYASKACDLNNGSGCDVLGFLYGSGKGVEKNLTKAAYFYSKACDLNEGLGCFNLGGL 180
Query: 214 YEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTL 273
Y G V+++ + LY K C LK GC +AV+Y G+GV KDL KA Y K C L
Sbjct: 181 YN-GQGVEKDLTKVAYLYSKACELKESFGCGALAVLYINGQGVEKDLTKADQYISKACKL 239
Query: 274 GFSGSCKVLEE 284
G +C+ L+E
Sbjct: 240 GDQEACEALKE 250
Score = 105 bits (261), Expect = 8e-22
Identities = 58/145 (40%), Positives = 76/145 (52%), Gaps = 4/145 (2%)
Query: 147 GVKQNYAKALFLSKY----ACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLK 202
GVK N AK +K AC+LNYG C +G +Y + KGV+K+L KA + + C LK
Sbjct: 2 GVKSNKAKDFIQAKKYFEKACNLNYGGGCGALGDLYDDGKGVEKNLIKAAQPYTKACELK 61
Query: 203 DGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDK 262
+G C L +Y G V++N +A K C L G GC N+ +Y G+GV KDL K
Sbjct: 62 EGLGCERLWSLYYYGRGVEKNLIKAAQYASKACDLNNGVGCKNLGFLYEYGEGVEKDLIK 121
Query: 263 AISYYKKGCTLGFSGSCKVLEEVIG 287
A Y K C L C VL + G
Sbjct: 122 AAQYASKACDLNNGSGCDVLGFLYG 146
>gb|AAL47062.1|AF326614_1 (AF326614) JHP318-like protein [Helicobacter pylori]
Length = 216
Score = 188 bits (477), Expect = 7e-47
Identities = 87/199 (43%), Positives = 121/199 (60%)
Query: 86 YYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNG 145
Y+ + C L N C +LG +Y+DG GV+KNL KA Y+Y + C LK G+ C LG +Y++G
Sbjct: 17 YFEKACGLNNGGGCGALGDLYDDGKGVEKNLIKAAYFYSKACDLKEGMGCKRLGSLYYHG 76
Query: 146 TGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGA 205
V++N KA + AC LN G C +G +Y+ +GV+K+L KA + + C LKDG
Sbjct: 77 RDVEKNLTKAAYFYSKACDLNNGGGCGNLGVLYQKGEGVEKNLIKAAQFYSKACELKDGL 136
Query: 206 SCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAIS 265
C LG +Y G V+++ +A LY K C LK G GC N+ +YY GKGV KDL KA
Sbjct: 137 GCKDLGTLYYNGEGVEKDLIKAAYLYSKACDLKEGLGCFNLGALYYNGKGVEKDLTKAAY 196
Query: 266 YYKKGCTLGFSGSCKVLEE 284
+Y K C LG +C+ L+E
Sbjct: 197 FYSKACKLGSQEACEALKE 215
Score = 176 bits (446), Expect = 3e-43
Identities = 81/210 (38%), Positives = 124/210 (58%)
Query: 34 MATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNL 93
M ++ + DY +A +++++C L G GC +LG +Y+DG GV++N+ KA ++Y + C+L
Sbjct: 1 MGVKSSEAKDYIQAKKYFEKACGLNNGGGCGALGDLYDDGKGVEKNLIKAAYFYSKACDL 60
Query: 94 RNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYA 153
+ + C LGS+Y G V+KNL KA Y+Y + C L G CG+LG +Y G GV++N
Sbjct: 61 KEGMGCKRLGSLYYHGRDVEKNLTKAAYFYSKACDLNNGGGCGNLGVLYQKGEGVEKNLI 120
Query: 154 KALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYM 213
KA AC L G+ C +G +Y N +GV+KDL KA + + C LK+G C +LG +
Sbjct: 121 KAAQFYSKACELKDGLGCKDLGTLYYNGEGVEKDLIKAAYLYSKACDLKEGLGCFNLGAL 180
Query: 214 YEVGMDVKQNGEQALNLYKKGCYLKRGSGC 243
Y G V+++ +A Y K C L C
Sbjct: 181 YYNGKGVEKDLTKAAYFYSKACKLGSQEAC 210
Score = 159 bits (402), Expect = 4e-38
Identities = 71/165 (43%), Positives = 106/165 (64%)
Query: 46 KAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSM 105
KA FY ++C+L+ G+GC LGS+Y G V++N+TKA ++Y + C+L N C +LG +
Sbjct: 49 KAAYFYSKACDLKEGMGCKRLGSLYYHGRDVEKNLTKAAYFYSKACDLNNGGGCGNLGVL 108
Query: 106 YEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSL 165
Y+ G+GV+KNL KA +Y + C LK G+ C LG +Y+NG GV+++ KA +L AC L
Sbjct: 109 YQKGEGVEKNLIKAAQFYSKACELKDGLGCKDLGTLYYNGEGVEKDLIKAAYLYSKACDL 168
Query: 166 NYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSL 210
G+ C +G +Y N KGV+KDL KA + + C L +C +L
Sbjct: 169 KEGLGCFNLGALYYNGKGVEKDLTKAAYFYSKACKLGSQEACEAL 213
Score = 130 bits (326), Expect = 2e-29
Identities = 62/160 (38%), Positives = 92/160 (56%)
Query: 114 KNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNF 173
K+ +A Y+ + C L G CG+LG +Y +G GV++N KA + AC L G+ C
Sbjct: 9 KDYIQAKKYFEKACGLNNGGGCGALGDLYDDGKGVEKNLIKAAYFYSKACDLKEGMGCKR 68
Query: 174 VGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKK 233
+G +Y + + V+K+L KA + + C L +G C +LG +Y+ G V++N +A Y K
Sbjct: 69 LGSLYYHGRDVEKNLTKAAYFYSKACDLNNGGGCGNLGVLYQKGEGVEKNLIKAAQFYSK 128
Query: 234 GCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTL 273
C LK G GC ++ +YY G+GV KDL KA Y K C L
Sbjct: 129 ACELKDGLGCKDLGTLYYNGEGVEKDLIKAAYLYSKACDL 168
Score = 107 bits (266), Expect = 2e-22
Identities = 58/140 (41%), Positives = 77/140 (54%), Gaps = 4/140 (2%)
Query: 147 GVKQNYAKALFLSKY----ACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLK 202
GVK + AK +K AC LN G C +G +Y + KGV+K+L KA + + C LK
Sbjct: 2 GVKSSEAKDYIQAKKYFEKACGLNNGGGCGALGDLYDDGKGVEKNLIKAAYFYSKACDLK 61
Query: 203 DGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDK 262
+G C LG +Y G DV++N +A Y K C L G GC N+ V+Y G+GV K+L K
Sbjct: 62 EGMGCKRLGSLYYHGRDVEKNLTKAAYFYSKACDLNNGGGCGNLGVLYQKGEGVEKNLIK 121
Query: 263 AISYYKKGCTLGFSGSCKVL 282
A +Y K C L CK L
Sbjct: 122 AAQFYSKACELKDGLGCKDL 141
Score = 61.6 bits (148), Expect = 1e-08
Identities = 24/60 (40%), Positives = 42/60 (70%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
D KA Y ++C+L+ G+GC +LG++Y +G GV++++TKA ++Y + C L + AC +L
Sbjct: 154 DLIKAAYLYSKACDLKEGLGCFNLGALYYNGKGVEKDLTKAAYFYSKACKLGSQEACEAL 213
>ref|NP_207009.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
sp|O25001|HCPA_HELPY HcpA protein precursor (Cysteine-rich 28 kDa protein)
pir||C64546 conserved hypothetical secreted protein HP0211 - Helicobacter
pylori (strain 26695)
gb|AAD07279.1| (AE000541) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 250
Score = 169 bits (429), Expect = 3e-41
Identities = 80/208 (38%), Positives = 119/208 (56%), Gaps = 4/208 (1%)
Query: 78 QNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGS 137
Q+ +A ++ + C L+N C LG+ YE+G GV K+L KAI +Y +GC L G C
Sbjct: 43 QDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNL 102
Query: 138 LGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKR 197
LG +Y+NG GV ++ KA AC LN+ C +G ++ G KDL+KAL +++
Sbjct: 103 LGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEK 162
Query: 198 GCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVP 257
C LKD C++ GY+Y V +N ++A+ Y K C LK G GC+N+ VM Y +G
Sbjct: 163 ACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTA 218
Query: 258 KDLDKAISYYKKGCTLGFSGSCKVLEEV 285
KD +A+ +KKGC +C L+E+
Sbjct: 219 KDEKQAVENFKKGCKSSVKEACDALKEL 246
Score = 149 bits (375), Expect = 5e-35
Identities = 79/236 (33%), Positives = 125/236 (52%), Gaps = 5/236 (2%)
Query: 1 MIKSWTKKWFLILFLMASCSSYLVATTGEKYF-KMATQAFKRGDYHKAVAFYKRSCNLRV 59
M+ + K F +L L C L+A K + ++ K+ D+ +A ++++C L+
Sbjct: 1 MLGNVKKTLFGVLCLGTLCLRGLMAEPDAKELVNLGIESAKKQDFAQAKTHFEKACELKN 60
Query: 60 GVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKA 119
G GC LG+ YE+G GV +++ KA+ +Y +GC L + C LG++Y +G GV K+ KA
Sbjct: 61 GFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKA 120
Query: 120 IYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYR 179
YY + C L C LG ++ G G ++ KAL L + AC L C GY+Y
Sbjct: 121 SQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY- 179
Query: 180 NAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGC 235
V K+ K+A+ + + C LKDG C +LG M ++ +QA+ +KKGC
Sbjct: 180 ---SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGC 232
Score = 107 bits (267), Expect = 2e-22
Identities = 53/131 (40%), Positives = 72/131 (54%)
Query: 149 KQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCV 208
KQ++A+A + AC L G C F+G Y KGV KDLKKA+ + +GC L DG C
Sbjct: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCN 101
Query: 209 SLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYK 268
LG +Y G V ++ ++A Y K C L GC + +++ G G PKDL KA+ Y+
Sbjct: 102 LLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYE 161
Query: 269 KGCTLGFSGSC 279
K C L S C
Sbjct: 162 KACDLKDSPGC 172
Score = 57.0 bits (136), Expect = 3e-07
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
D KA+ Y+++C+L+ GC + G +Y V +N +A+ Y + C L++ C +L
Sbjct: 152 DLRKALDLYEKACDLKDSPGCINAGYIYS----VTKNFKEAIVRYSKACELKDGRGCYNL 207
Query: 103 GSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSL 138
G M + G K+ +A+ +++GC +C +L
Sbjct: 208 GVMQYNAQGTAKDEKQAVENFKKGCKSSVKEACDAL 243
>gb|AAL47059.1|AF326610_1 (AF326610) JHP318-like protein [Helicobacter pylori]
Length = 213
Score = 169 bits (427), Expect = 5e-41
Identities = 84/207 (40%), Positives = 123/207 (58%), Gaps = 3/207 (1%)
Query: 78 QNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGS 137
Q+ +KA Y+ + C+L+ C +LG +Y+D V+KNL KA Y+Y + C LK G+ C
Sbjct: 9 QDFSKARKYFEKACDLKYGGGCGALGDLYDD---VEKNLIKAAYFYSKACDLKEGMGCKR 65
Query: 138 LGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKR 197
LG +Y++G V++N KA + AC LN G C +G +Y+ +GV+K+L KA + +
Sbjct: 66 LGSLYYHGRDVEKNLTKAAYFYSKACDLNNGGGCGNLGVLYQKGEGVEKNLIKAAQFYSK 125
Query: 198 GCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVP 257
C LKDG C LG +Y G V+++ +A LY K C LK GC +AV+Y G+GV
Sbjct: 126 ACELKDGLGCKDLGTLYYNGEGVEKDLIKAAYLYSKACELKESFGCGALAVLYINGQGVE 185
Query: 258 KDLDKAISYYKKGCTLGFSGSCKVLEE 284
K+L KA Y K C LG +C+ L+E
Sbjct: 186 KNLIKADQYISKACKLGDQEACEALKE 212
Score = 161 bits (408), Expect = 7e-39
Identities = 77/210 (36%), Positives = 121/210 (56%), Gaps = 3/210 (1%)
Query: 34 MATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNL 93
M ++ + D+ KA +++++C+L+ G GC +LG +Y+D V++N+ KA ++Y + C+L
Sbjct: 1 MGMLSYDKQDFSKARKYFEKACDLKYGGGCGALGDLYDD---VEKNLIKAAYFYSKACDL 57
Query: 94 RNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYA 153
+ + C LGS+Y G V+KNL KA Y+Y + C L G CG+LG +Y G GV++N
Sbjct: 58 KEGMGCKRLGSLYYHGRDVEKNLTKAAYFYSKACDLNNGGGCGNLGVLYQKGEGVEKNLI 117
Query: 154 KALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYM 213
KA AC L G+ C +G +Y N +GV+KDL KA + + C LK+ C +L +
Sbjct: 118 KAAQFYSKACELKDGLGCKDLGTLYYNGEGVEKDLIKAAYLYSKACELKESFGCGALAVL 177
Query: 214 YEVGMDVKQNGEQALNLYKKGCYLKRGSGC 243
Y G V++N +A K C L C
Sbjct: 178 YINGQGVEKNLIKADQYISKACKLGDQEAC 207
Score = 152 bits (383), Expect = 6e-36
Identities = 68/165 (41%), Positives = 103/165 (62%)
Query: 46 KAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSM 105
KA FY ++C+L+ G+GC LGS+Y G V++N+TKA ++Y + C+L N C +LG +
Sbjct: 46 KAAYFYSKACDLKEGMGCKRLGSLYYHGRDVEKNLTKAAYFYSKACDLNNGGGCGNLGVL 105
Query: 106 YEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSL 165
Y+ G+GV+KNL KA +Y + C LK G+ C LG +Y+NG GV+++ KA +L AC L
Sbjct: 106 YQKGEGVEKNLIKAAQFYSKACELKDGLGCKDLGTLYYNGEGVEKDLIKAAYLYSKACEL 165
Query: 166 NYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSL 210
C + +Y N +GV+K+L KA + C L D +C +L
Sbjct: 166 KESFGCGALAVLYINGQGVEKNLIKADQYISKACKLGDQEACEAL 210
Score = 49.3 bits (116), Expect = 5e-05
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
D KA Y ++C L+ GC +L +Y +G GV++N+ KA Y + C L + AC +L
Sbjct: 151 DLIKAAYLYSKACELKESFGCGALAVLYINGQGVEKNLIKADQYISKACKLGDQEACEAL 210
>ref|NP_222918.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZMM1|HCPA_HELPJ HcpA protein precursor (Cysteine-rich 28 kDa protein)
pir||B71961 hypothetical protein jhp0197 - Helicobacter pylori (strain J99)
gb|AAD05781.1| (AE001458) putative [Helicobacter pylori J99]
Length = 250
Score = 167 bits (423), Expect = 1e-40
Identities = 79/208 (37%), Positives = 118/208 (55%), Gaps = 4/208 (1%)
Query: 78 QNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGS 137
Q+ +A ++ + C L+ C LG+ YE+G GV K+L KAI +Y +GC L G C
Sbjct: 43 QDFAQAKAHFEKACELKEGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCRL 102
Query: 138 LGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKR 197
LG +Y+NG GV ++ KA +C LN+ C +G ++ G KDL+KAL +++
Sbjct: 103 LGNLYYNGQGVSKDAKKASQYYSKSCELNHAEGCTVLGSLHHYGVGTPKDLRKALDLYEK 162
Query: 198 GCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVP 257
C LKD C++ GYMY V +N ++A+ Y K C LK G GC+N+ VM Y +G
Sbjct: 163 ACDLKDSPGCINAGYMY----GVAKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTA 218
Query: 258 KDLDKAISYYKKGCTLGFSGSCKVLEEV 285
KD +A+ +KKGC +C L+E+
Sbjct: 219 KDEKQAVENFKKGCKSSVKEACDALKEL 246
Score = 159 bits (401), Expect = 5e-38
Identities = 84/236 (35%), Positives = 128/236 (53%), Gaps = 5/236 (2%)
Query: 1 MIKSWTKKWFLILFLMASCSSYLVATTGEKYF-KMATQAFKRGDYHKAVAFYKRSCNLRV 59
M+ S K F +L L A C L+A K + ++ K+ D+ +A A ++++C L+
Sbjct: 1 MLGSVKKTLFGVLCLGALCLRGLMAEPDAKELVSLGIESVKKQDFAQAKAHFEKACELKE 60
Query: 60 GVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKA 119
G GC LG+ YE+G GV +++ KA+ +Y +GC L + C LG++Y +G GV K+ KA
Sbjct: 61 GFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCRLLGNLYYNGQGVSKDAKKA 120
Query: 120 IYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYR 179
YY + C L C LG ++ G G ++ KAL L + AC L C GYMY
Sbjct: 121 SQYYSKSCELNHAEGCTVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYMY- 179
Query: 180 NAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGC 235
GV K+ K+A+ + + C LKDG C +LG M ++ +QA+ +KKGC
Sbjct: 180 ---GVAKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGC 232
Score = 107 bits (268), Expect = 1e-22
Identities = 53/131 (40%), Positives = 72/131 (54%)
Query: 149 KQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCV 208
KQ++A+A + AC L G C F+G Y KGV KDLKKA+ + +GC L DG C
Sbjct: 42 KQDFAQAKAHFEKACELKEGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCR 101
Query: 209 SLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYK 268
LG +Y G V ++ ++A Y K C L GC + +++ G G PKDL KA+ Y+
Sbjct: 102 LLGNLYYNGQGVSKDAKKASQYYSKSCELNHAEGCTVLGSLHHYGVGTPKDLRKALDLYE 161
Query: 269 KGCTLGFSGSC 279
K C L S C
Sbjct: 162 KACDLKDSPGC 172
Score = 60.5 bits (145), Expect = 2e-08
Identities = 29/96 (30%), Positives = 52/96 (53%), Gaps = 4/96 (4%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
D KA+ Y+++C+L+ GC + G MY GV +N +A+ Y + C L++ C +L
Sbjct: 152 DLRKALDLYEKACDLKDSPGCINAGYMY----GVAKNFKEAIVRYSKACELKDGRGCYNL 207
Query: 103 GSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSL 138
G M + G K+ +A+ +++GC +C +L
Sbjct: 208 GVMQYNAQGTAKDEKQAVENFKKGCKSSVKEACDAL 243
>gb|AAB63298.1| (AF008565) Orf2 [Helicobacter pylori]
Length = 250
Score = 166 bits (420), Expect = 3e-40
Identities = 78/208 (37%), Positives = 118/208 (56%), Gaps = 4/208 (1%)
Query: 78 QNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGS 137
Q+ +A ++ + C L+N C LG+ YE+G GV K+L KAI +Y + C L G C
Sbjct: 43 QDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKSCELNDGYGCNL 102
Query: 138 LGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKR 197
LG +Y+NG GV ++ KA AC LN+ C +G ++ G KDL+KAL +++
Sbjct: 103 LGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEK 162
Query: 198 GCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVP 257
C LKD C++ GY+Y V +N ++A+ Y + C L G GC+N+ VM Y +G
Sbjct: 163 ACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSQACELNDGRGCYNLGVMQYNAQGTA 218
Query: 258 KDLDKAISYYKKGCTLGFSGSCKVLEEV 285
KD +A+ +KKGC G +C L+E+
Sbjct: 219 KDEKQAVENFKKGCKSGVKEACDALKEL 246
Score = 149 bits (375), Expect = 5e-35
Identities = 79/236 (33%), Positives = 125/236 (52%), Gaps = 5/236 (2%)
Query: 1 MIKSWTKKWFLILFLMASCSSYLVATTGEKYF-KMATQAFKRGDYHKAVAFYKRSCNLRV 59
M+ S K +F +L L A C L+A K + ++ K+ D+ +A ++++C L+
Sbjct: 1 MLGSVKKTFFWVLCLGALCLRGLMAEPDAKELVNLGIESAKKQDFAQAKTHFEKACELKN 60
Query: 60 GVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKA 119
G GC LG+ YE+G GV +++ KA+ +Y + C L + C LG++Y +G GV K+ KA
Sbjct: 61 GFGCVFLGAFYEEGKGVGKDLKKAIQFYTKSCELNDGYGCNLLGNLYYNGQGVSKDAKKA 120
Query: 120 IYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYR 179
YY + C L C LG ++ G G ++ KAL L + AC L C GY+Y
Sbjct: 121 SQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY- 179
Query: 180 NAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGC 235
V K+ K+A+ + + C L DG C +LG M ++ +QA+ +KKGC
Sbjct: 180 ---SVTKNFKEAIVRYSQACELNDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGC 232
Score = 105 bits (261), Expect = 8e-22
Identities = 52/131 (39%), Positives = 71/131 (53%)
Query: 149 KQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCV 208
KQ++A+A + AC L G C F+G Y KGV KDLKKA+ + + C L DG C
Sbjct: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKSCELNDGYGCN 101
Query: 209 SLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYK 268
LG +Y G V ++ ++A Y K C L GC + +++ G G PKDL KA+ Y+
Sbjct: 102 LLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYE 161
Query: 269 KGCTLGFSGSC 279
K C L S C
Sbjct: 162 KACDLKDSPGC 172
Score = 55.5 bits (132), Expect = 7e-07
Identities = 30/98 (30%), Positives = 53/98 (53%), Gaps = 8/98 (8%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
D KA+ Y+++C+L+ GC + G +Y V +N +A+ Y + C L + C +L
Sbjct: 152 DLRKALDLYEKACDLKDSPGCINAGYIYS----VTKNFKEAIVRYSQACELNDGRGCYNL 207
Query: 103 GSMYEDGDGVQKNLPKAIYYYRRGCHLKGGV--SCGSL 138
G M + G K+ +A+ +++GC K GV +C +L
Sbjct: 208 GVMQYNAQGTAKDEKQAVENFKKGC--KSGVKEACDAL 243
>gb|AAC24210.1| (AF053708) cysteine-rich protein; HcpA [Helicobacter pylori]
Length = 250
Score = 166 bits (420), Expect = 3e-40
Identities = 78/208 (37%), Positives = 118/208 (56%), Gaps = 4/208 (1%)
Query: 78 QNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGS 137
Q+ +A ++ + C L+N C LG+ YE+G GV K+L KAI +Y + C L G C
Sbjct: 43 QDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKSCELNDGYGCNL 102
Query: 138 LGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKR 197
LG +Y+NG GV ++ KA AC LN+ C +G ++ G KDL+KAL +++
Sbjct: 103 LGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEK 162
Query: 198 GCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVP 257
C LKD C++ GY+Y V +N ++A+ Y + C L G GC+N+ VM Y +G
Sbjct: 163 ACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSQACELNDGRGCYNLGVMQYNAQGTA 218
Query: 258 KDLDKAISYYKKGCTLGFSGSCKVLEEV 285
KD +A+ +KKGC G +C L+E+
Sbjct: 219 KDEKQAVENFKKGCKSGVKEACDALKEL 246
Score = 148 bits (373), Expect = 8e-35
Identities = 79/236 (33%), Positives = 125/236 (52%), Gaps = 5/236 (2%)
Query: 1 MIKSWTKKWFLILFLMASCSSYLVATTGEKYF-KMATQAFKRGDYHKAVAFYKRSCNLRV 59
M+ S K +F +L L A C L+A K + ++ K+ D+ +A ++++C L+
Sbjct: 1 MLGSVKKTFFGVLCLGALCLRGLMAEPDAKELVNLGIESAKKQDFAQAKTHFEKACELKN 60
Query: 60 GVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKA 119
G GC LG+ YE+G GV +++ KA+ +Y + C L + C LG++Y +G GV K+ KA
Sbjct: 61 GFGCVFLGAFYEEGKGVGKDLKKAIQFYTKSCELNDGYGCNLLGNLYYNGQGVSKDAKKA 120
Query: 120 IYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYR 179
YY + C L C LG ++ G G ++ KAL L + AC L C GY+Y
Sbjct: 121 SQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY- 179
Query: 180 NAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGC 235
V K+ K+A+ + + C L DG C +LG M ++ +QA+ +KKGC
Sbjct: 180 ---SVTKNFKEAIVRYSQACELNDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGC 232
Score = 105 bits (261), Expect = 8e-22
Identities = 52/131 (39%), Positives = 71/131 (53%)
Query: 149 KQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCV 208
KQ++A+A + AC L G C F+G Y KGV KDLKKA+ + + C L DG C
Sbjct: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKSCELNDGYGCN 101
Query: 209 SLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYK 268
LG +Y G V ++ ++A Y K C L GC + +++ G G PKDL KA+ Y+
Sbjct: 102 LLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYE 161
Query: 269 KGCTLGFSGSC 279
K C L S C
Sbjct: 162 KACDLKDSPGC 172
Score = 55.5 bits (132), Expect = 7e-07
Identities = 30/98 (30%), Positives = 53/98 (53%), Gaps = 8/98 (8%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
D KA+ Y+++C+L+ GC + G +Y V +N +A+ Y + C L + C +L
Sbjct: 152 DLRKALDLYEKACDLKDSPGCINAGYIYS----VTKNFKEAIVRYSQACELNDGRGCYNL 207
Query: 103 GSMYEDGDGVQKNLPKAIYYYRRGCHLKGGV--SCGSL 138
G M + G K+ +A+ +++GC K GV +C +L
Sbjct: 208 GVMQYNAQGTAKDEKQAVENFKKGC--KSGVKEACDAL 243
>ref|NP_207033.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
pir||C64549 conserved hypothetical secreted protein HP0235 - Helicobacter
pylori (strain 26695)
gb|AAD07303.1| (AE000543) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 355
Score = 164 bits (414), Expect = 1e-39
Identities = 93/301 (30%), Positives = 146/301 (47%), Gaps = 36/301 (11%)
Query: 18 SCSSYLVATTGEKYFKMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVD 77
S +++L + +A +A+K G+Y KA +++K++CN V GCT LG +YE+G G
Sbjct: 17 SLNAHLWGKQDNSFLGVAEKAYKSGNYSKATSYFKKACNDGVSEGCTQLGIIYENGQGTR 76
Query: 78 QNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGS 137
+ KA+ YY+ C + C LG +Y++G G +N +AI Y + C LK SC +
Sbjct: 77 IDYKKALEYYKTACQADDREGCFGLGGLYDEGLGTTQNYQEAIDAYAKACVLKHPESCYN 136
Query: 138 LGFMY---FNGTG--------------------------------VKQNYAKALFLSKYA 162
LG +Y G VKQ+ KA+ A
Sbjct: 137 LGIIYDRKIKGNADQAVTYYQKSCNFDMAKGCYVLGVAYEKGFLEVKQSNHKAVIYYLKA 196
Query: 163 CSLNYGISCNFVGYMYRNA-KGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVK 221
C L+ G +C +G ++ N G+ +D + A ++ C L + C SLG MY +G VK
Sbjct: 197 CRLDDGQACRALGSLFENGDAGLDEDFEVAFDYLQKACGLNNSGGCASLGSMYMLGRYVK 256
Query: 222 QNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGSCKV 281
++ ++A N +K+ C + C + MY G VPKDL KA+ Y++GC +G C
Sbjct: 257 KDPQKAFNFFKQACDMGSAVSCSRMGFMYSQGDAVPKDLRKALDNYERGCDMGDEVGCFA 316
Query: 282 L 282
L
Sbjct: 317 L 317
Score = 149 bits (375), Expect = 5e-35
Identities = 82/208 (39%), Positives = 117/208 (55%), Gaps = 6/208 (2%)
Query: 41 RGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGD-GVDQNITKAVFYYRRGCNLRNHLAC 99
+G+ +AV +Y++SCN + GC LG YE G V Q+ KAV YY + C L + AC
Sbjct: 146 KGNADQAVTYYQKSCNFDMAKGCYVLGVAYEKGFLEVKQSNHKAVIYYLKACRLDDGQAC 205
Query: 100 ASLGSMYEDGD-GVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFL 158
+LGS++E+GD G+ ++ A Y ++ C L C SLG MY G VK++ KA
Sbjct: 206 RALGSLFENGDAGLDEDFEVAFDYLQKACGLNNSGGCASLGSMYMLGRYVKKDPQKAFNF 265
Query: 159 SKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGM 218
K AC + +SC+ +G+MY V KDL+KAL N++RGC + D C +L MY M
Sbjct: 266 FKQACDMGSAVSCSRMGFMYSQGDAVPKDLRKALDNYERGCDMGDEVGCFALAGMY-YNM 324
Query: 219 DVKQNGEQALNLYKKGCYLKRGSGCHNV 246
K+N A+ +Y KGC L C N+
Sbjct: 325 KDKEN---AIMIYDKGCKLGMKQACENL 349
Score = 144 bits (363), Expect = 1e-33
Identities = 91/283 (32%), Positives = 135/283 (47%), Gaps = 40/283 (14%)
Query: 41 RGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKA----------------- 83
R DY KA+ +YK +C GC LG +Y++G G QN +A
Sbjct: 76 RIDYKKALEYYKTACQADDREGCFGLGGLYDEGLGTTQNYQEAIDAYAKACVLKHPESCY 135
Query: 84 -----------------VFYYRRGCNLRNHLACASLGSMYEDGD-GVQKNLPKAIYYYRR 125
V YY++ CN C LG YE G V+++ KA+ YY +
Sbjct: 136 NLGIIYDRKIKGNADQAVTYYQKSCNFDMAKGCYVLGVAYEKGFLEVKQSNHKAVIYYLK 195
Query: 126 GCHLKGGVSCGSLGFMYFNG-TGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGV 184
C L G +C +LG ++ NG G+ +++ A + AC LN C +G MY + V
Sbjct: 196 ACRLDDGQACRALGSLFENGDAGLDEDFEVAFDYLQKACGLNNSGGCASLGSMYMLGRYV 255
Query: 185 QKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCH 244
+KD +KA FK+ C + SC +G+MY G V ++ +AL+ Y++GC + GC
Sbjct: 256 KKDPQKAFNFFKQACDMGSAVSCSRMGFMYSQGDAVPKDLRKALDNYERGCDMGDEVGCF 315
Query: 245 NVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGSCKVLEEVIG 287
+A MYY KD + AI Y KGC LG +C+ L ++ G
Sbjct: 316 ALAGMYYN----MKDKENAIMIYDKGCKLGMKQACENLTKLRG 354
Score = 98.2 bits (243), Expect = 1e-19
Identities = 56/183 (30%), Positives = 88/183 (47%), Gaps = 3/183 (1%)
Query: 115 NLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFV 174
N KA Y+++ C+ C LG +Y NG G + +Y KAL K AC + C +
Sbjct: 42 NYSKATSYFKKACNDGVSEGCTQLGIIYENGQGTRIDYKKALEYYKTACQADDREGCFGL 101
Query: 175 GYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKG 234
G +Y G ++ ++A+ + + C LK SC +LG +Y+ +K N +QA+ Y+K
Sbjct: 102 GGLYDEGLGTTQNYQEAIDAYAKACVLKHPESCYNLGIIYD--RKIKGNADQAVTYYQKS 159
Query: 235 CYLKRGSGCHNVAVMYYTG-KGVPKDLDKAISYYKKGCTLGFSGSCKVLEEVIGKKSDDL 293
C GC+ + V Y G V + KA+ YY K C L +C+ L + L
Sbjct: 160 CNFDMAKGCYVLGVAYEKGFLEVKQSNHKAVIYYLKACRLDDGQACRALGSLFENGDAGL 219
Query: 294 QDD 296
+D
Sbjct: 220 DED 222
Score = 67.8 bits (164), Expect = 1e-10
Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 39 FKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLA 98
+ + D KA F+K++C++ V C+ +G MY GD V +++ KA+ Y RGC++ + +
Sbjct: 254 YVKKDPQKAFNFFKQACDMGSAVSCSRMGFMYSQGDAVPKDLRKALDNYERGCDMGDEVG 313
Query: 99 CASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSL 138
C +L MY + K+ AI Y +GC L +C +L
Sbjct: 314 CFALAGMYYN----MKDKENAIMIYDKGCKLGMKQACENL 349
Score = 58.9 bits (141), Expect = 7e-08
Identities = 33/108 (30%), Positives = 48/108 (43%)
Query: 190 KALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVM 249
KA + FK+ C+ C LG +YE G + + ++AL YK C GC + +
Sbjct: 45 KATSYFKKACNDGVSEGCTQLGIIYENGQGTRIDYKKALEYYKTACQADDREGCFGLGGL 104
Query: 250 YYTGKGVPKDLDKAISYYKKGCTLGFSGSCKVLEEVIGKKSDDLQDDA 297
Y G G ++ +AI Y K C L SC L + +K D A
Sbjct: 105 YDEGLGTTQNYQEAIDAYAKACVLKHPESCYNLGIIYDRKIKGNADQA 152
>ref|NP_222941.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71958 hypothetical protein jhp0220 - Helicobacter pylori (strain J99)
gb|AAD05807.1| (AE001460) putative [Helicobacter pylori J99]
Length = 355
Score = 161 bits (407), Expect = 1e-38
Identities = 93/301 (30%), Positives = 145/301 (47%), Gaps = 36/301 (11%)
Query: 18 SCSSYLVATTGEKYFKMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVD 77
S +++L + + +A+K G+Y KA +++K++CN V GCT LG +YE+G G
Sbjct: 17 SLNAHLWGKQDNSFLGIGERAYKSGNYSKAASYFKKACNDGVSEGCTQLGIIYENGQGTR 76
Query: 78 QNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGS 137
+ KA+ YY+ C + C LG +Y++G G +N +AI Y + C LK SC +
Sbjct: 77 IDYKKALEYYKTACQADDREGCFGLGGLYDEGLGTAQNYQEAIDAYAKACVLKHPESCYN 136
Query: 138 LGFM----------------------------YFNGTG-------VKQNYAKALFLSKYA 162
LG + Y GT VKQ+ KA+ A
Sbjct: 137 LGIIYDRKIKGNAAQAVTYYQKSCNFDMAKGCYILGTAYEKGFLEVKQSNHKAVIYYLKA 196
Query: 163 CSLNYGISCNFVGYMYRNA-KGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVK 221
C LN G +C +G ++ N G+ +D + A ++ C L + C SLG MY +G VK
Sbjct: 197 CRLNEGQACRALGSLFENGDAGLDEDFEVAFDYLQKACALNNSGGCASLGSMYMLGRYVK 256
Query: 222 QNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGSCKV 281
++ ++A N +K+ C + C + MY G V KDL KA+ Y++GC +G C
Sbjct: 257 KDPQKAFNYFKQACDMGSAVSCSRMGFMYSQGDTVSKDLRKALDNYERGCDMGDEVGCFA 316
Query: 282 L 282
L
Sbjct: 317 L 317
Score = 149 bits (376), Expect = 4e-35
Identities = 82/208 (39%), Positives = 117/208 (55%), Gaps = 6/208 (2%)
Query: 41 RGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGD-GVDQNITKAVFYYRRGCNLRNHLAC 99
+G+ +AV +Y++SCN + GC LG+ YE G V Q+ KAV YY + C L AC
Sbjct: 146 KGNAAQAVTYYQKSCNFDMAKGCYILGTAYEKGFLEVKQSNHKAVIYYLKACRLNEGQAC 205
Query: 100 ASLGSMYEDGD-GVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFL 158
+LGS++E+GD G+ ++ A Y ++ C L C SLG MY G VK++ KA
Sbjct: 206 RALGSLFENGDAGLDEDFEVAFDYLQKACALNNSGGCASLGSMYMLGRYVKKDPQKAFNY 265
Query: 159 SKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGM 218
K AC + +SC+ +G+MY V KDL+KAL N++RGC + D C +L MY M
Sbjct: 266 FKQACDMGSAVSCSRMGFMYSQGDTVSKDLRKALDNYERGCDMGDEVGCFALAGMY-YNM 324
Query: 219 DVKQNGEQALNLYKKGCYLKRGSGCHNV 246
K+N A+ +Y KGC L C N+
Sbjct: 325 KDKEN---AIMIYDKGCKLGMKQACENL 349
Score = 147 bits (370), Expect = 2e-34
Identities = 91/283 (32%), Positives = 137/283 (48%), Gaps = 40/283 (14%)
Query: 41 RGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNI-------------------- 80
R DY KA+ +YK +C GC LG +Y++G G QN
Sbjct: 76 RIDYKKALEYYKTACQADDREGCFGLGGLYDEGLGTAQNYQEAIDAYAKACVLKHPESCY 135
Query: 81 --------------TKAVFYYRRGCNLRNHLACASLGSMYEDGD-GVQKNLPKAIYYYRR 125
+AV YY++ CN C LG+ YE G V+++ KA+ YY +
Sbjct: 136 NLGIIYDRKIKGNAAQAVTYYQKSCNFDMAKGCYILGTAYEKGFLEVKQSNHKAVIYYLK 195
Query: 126 GCHLKGGVSCGSLGFMYFNG-TGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGV 184
C L G +C +LG ++ NG G+ +++ A + AC+LN C +G MY + V
Sbjct: 196 ACRLNEGQACRALGSLFENGDAGLDEDFEVAFDYLQKACALNNSGGCASLGSMYMLGRYV 255
Query: 185 QKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCH 244
+KD +KA FK+ C + SC +G+MY G V ++ +AL+ Y++GC + GC
Sbjct: 256 KKDPQKAFNYFKQACDMGSAVSCSRMGFMYSQGDTVSKDLRKALDNYERGCDMGDEVGCF 315
Query: 245 NVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGSCKVLEEVIG 287
+A MYY KD + AI Y KGC LG +C+ L ++ G
Sbjct: 316 ALAGMYYN----MKDKENAIMIYDKGCKLGMKQACENLTKLRG 354
Score = 95.9 bits (237), Expect = 5e-19
Identities = 55/183 (30%), Positives = 86/183 (46%), Gaps = 3/183 (1%)
Query: 115 NLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFV 174
N KA Y+++ C+ C LG +Y NG G + +Y KAL K AC + C +
Sbjct: 42 NYSKAASYFKKACNDGVSEGCTQLGIIYENGQGTRIDYKKALEYYKTACQADDREGCFGL 101
Query: 175 GYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKG 234
G +Y G ++ ++A+ + + C LK SC +LG +Y+ +K N QA+ Y+K
Sbjct: 102 GGLYDEGLGTAQNYQEAIDAYAKACVLKHPESCYNLGIIYD--RKIKGNAAQAVTYYQKS 159
Query: 235 CYLKRGSGCHNVAVMYYTG-KGVPKDLDKAISYYKKGCTLGFSGSCKVLEEVIGKKSDDL 293
C GC+ + Y G V + KA+ YY K C L +C+ L + L
Sbjct: 160 CNFDMAKGCYILGTAYEKGFLEVKQSNHKAVIYYLKACRLNEGQACRALGSLFENGDAGL 219
Query: 294 QDD 296
+D
Sbjct: 220 DED 222
Score = 66.2 bits (160), Expect = 4e-10
Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 39 FKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLA 98
+ + D KA ++K++C++ V C+ +G MY GD V +++ KA+ Y RGC++ + +
Sbjct: 254 YVKKDPQKAFNYFKQACDMGSAVSCSRMGFMYSQGDTVSKDLRKALDNYERGCDMGDEVG 313
Query: 99 CASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSL 138
C +L MY + K+ AI Y +GC L +C +L
Sbjct: 314 CFALAGMYYN----MKDKENAIMIYDKGCKLGMKQACENL 349
>gb|AAL47058.1|AF326608_1 (AF326608) JHP318-like protein [Helicobacter pylori]
Length = 215
Score = 146 bits (369), Expect = 2e-34
Identities = 67/175 (38%), Positives = 103/175 (58%)
Query: 29 EKYFKMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYR 88
E+ + ++ + D+ KA +++R+C L G GC +LG +Y DG GV++N+TKA +Y
Sbjct: 31 EELVDLGMLSYDKQDFSKARKYFERACGLNNGRGCNNLGVLYRDGQGVEKNLTKAAQFYS 90
Query: 89 RGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGV 148
+ C L++ C +LG +Y+ G+ V+KNL KA +Y + C LK G CG+LG +Y G V
Sbjct: 91 KACELKDGGGCGNLGVLYQKGEVVEKNLTKAAQFYSKACELKDGGGCGNLGVLYQKGEVV 150
Query: 149 KQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKD 203
++N KA +L AC L C + +Y N +GV+KDL KA + C L D
Sbjct: 151 EKNLTKAAYLYSKACELKESFGCGALAVLYINGQGVEKDLTKADQYISKACKLGD 205
Score = 134 bits (336), Expect = 2e-30
Identities = 68/172 (39%), Positives = 97/172 (55%)
Query: 113 QKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCN 172
+++ KA Y+ R C L G C +LG +Y +G GV++N KA AC L G C
Sbjct: 43 KQDFSKARKYFERACGLNNGRGCNNLGVLYRDGQGVEKNLTKAAQFYSKACELKDGGGCG 102
Query: 173 FVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYK 232
+G +Y+ + V+K+L KA + + C LKDG C +LG +Y+ G V++N +A LY
Sbjct: 103 NLGVLYQKGEVVEKNLTKAAQFYSKACELKDGGGCGNLGVLYQKGEVVEKNLTKAAYLYS 162
Query: 233 KGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGSCKVLEE 284
K C LK GC +AV+Y G+GV KDL KA Y K C LG + + L+E
Sbjct: 163 KACELKESFGCGALAVLYINGQGVEKDLTKADQYISKACKLGDQEARETLKE 214
Score = 44.3 bits (103), Expect = 0.002
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 46 KAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
KA Y ++C L+ GC +L +Y +G GV++++TKA Y + C L + A +L
Sbjct: 156 KAAYLYSKACELKESFGCGALAVLYINGQGVEKDLTKADQYISKACKLGDQEARETL 212
>ref|NP_223289.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71914 hypothetical protein jhp0571 - Helicobacter pylori (strain J99)
gb|AAD06154.1| (AE001490) putative [Helicobacter pylori J99]
Length = 352
Score = 137 bits (344), Expect = 2e-31
Identities = 78/246 (31%), Positives = 123/246 (49%), Gaps = 6/246 (2%)
Query: 40 KRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLAC 99
K+GDY A + +SC+ GC ++G+MY +G G+ N KA YY GC+ + AC
Sbjct: 79 KKGDYQGAFKLFSQSCDNGNAAGCFAVGAMYANGVGIQTNRLKAARYYEMGCSGGDATAC 138
Query: 100 ASLGSMYEDGDGVQKN-LPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFL 158
A+L MYE+ N A+ Y C ++C +LG+M+ NG+GV ++Y KA+
Sbjct: 139 ANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAMSY 198
Query: 159 SKYACSLNYGISCNFVGYM--YRNAKGVQK-DLKKALANFKRGCHLKDGASCVSLGYMYE 215
K++C + C +G M N G+ K L + N+ C+ D C +LG++Y
Sbjct: 199 YKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNY-LACNAGDMMGCANLGWIYA 257
Query: 216 VG-MDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLG 274
G + N A ++ C C+N+ V+Y G GVP+D +A+ + C G
Sbjct: 258 NGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNG 317
Query: 275 FSGSCK 280
F SC+
Sbjct: 318 FESSCR 323
Score = 103 bits (257), Expect = 2e-21
Identities = 70/216 (32%), Positives = 99/216 (45%), Gaps = 8/216 (3%)
Query: 87 YRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGT 146
+ + C+ N C ++G+MY +G G+Q N KA YY GC +C +L MY N
Sbjct: 90 FSQSCDNGNAAGCFAVGAMYANGVGIQTNRLKAARYYEMGCSGGDATACANLAQMYENKK 149
Query: 147 GVKQNYAK-ALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGA 205
N + AL L AC ++CN +G+M+ N GV KD KA++ +K C +
Sbjct: 150 NADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAMSYYKFSCENGNDM 209
Query: 206 SCVSLGYMYEV----GMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGK-GVPKDL 260
C +LG M V G+D Q + LN C GC N+ +Y G G P +
Sbjct: 210 GCYNLGLMSNVNNIYGIDKAQLSQVDLNYL--ACNAGDMMGCANLGWIYANGDLGAPLNN 267
Query: 261 DKAISYYKKGCTLGFSGSCKVLEEVIGKKSDDLQDD 296
A Y++ C G GSC L + K QDD
Sbjct: 268 HYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDD 303
Score = 79.0 bits (193), Expect = 6e-14
Identities = 50/138 (36%), Positives = 72/138 (51%), Gaps = 7/138 (5%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGD--GVDQNITKAVFYYRRGCNLRNHLACA 100
DY+KA+++YK SC +GC +LG M + G+D+ V CN + + CA
Sbjct: 191 DYYKAMSYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCA 250
Query: 101 SLGSMYEDGD-GVQKNLPKAIYYYRRGCHLKGGV--SCGSLGFMYFNGTGVKQNYAKALF 157
+LG +Y +GD G N A Y++ C GG+ SC +LG +Y G GV Q+ +AL
Sbjct: 251 NLGWIYANGDLGAPLNNHYAAKYFQMACD--GGILGSCNNLGVLYQKGLGVPQDDQRALD 308
Query: 158 LSKYACSLNYGISCNFVG 175
L YAC + SC G
Sbjct: 309 LFSYACDNGFESSCRNYG 326
Score = 48.5 bits (114), Expect = 9e-05
Identities = 26/88 (29%), Positives = 44/88 (49%), Gaps = 2/88 (2%)
Query: 217 GMDVKQNGEQ--ALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLG 274
G+D+ + G+ A L+ + C +GC V MY G G+ + KA YY+ GC+ G
Sbjct: 74 GIDLAKKGDYQGAFKLFSQSCDNGNAAGCFAVGAMYANGVGIQTNRLKAARYYEMGCSGG 133
Query: 275 FSGSCKVLEEVIGKKSDDLQDDAQNDTQ 302
+ +C L ++ K + +D +N Q
Sbjct: 134 DATACANLAQMYENKKNADSNDKENALQ 161
Score = 43.9 bits (102), Expect = 0.002
Identities = 29/102 (28%), Positives = 49/102 (47%), Gaps = 1/102 (0%)
Query: 54 SCNLRVGVGCTSLGSMYEDGD-GVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGV 112
+CN +GC +LG +Y +GD G N A Y++ C+ +C +LG +Y+ G GV
Sbjct: 240 ACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGV 299
Query: 113 QKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAK 154
++ +A+ + C SC + G + V NY +
Sbjct: 300 PQDDQRALDLFSYACDNGFESSCRNYGNFKEHLLHVNPNYGR 341
>gb|AAM66156.1|AF326634_1 (AF326634) JHP1437-like protein [Helicobacter pylori]
Length = 327
Score = 132 bits (332), Expect = 5e-30
Identities = 88/321 (27%), Positives = 131/321 (40%), Gaps = 38/321 (11%)
Query: 2 IKSWTKKWFLILFLMASCSSYLVATTGEK-YFKMATQAFKRGDYHKAVAFYKRSCNLRVG 60
+K K F +L L A C L+A + K + + D+ +A +++++C L
Sbjct: 4 VKGCQKSGFRVLCLGALCLGGLMAESNPKELIFLGITIYTDKDFTRAKEYFEKACELHDA 63
Query: 61 VGCTSLGSMYED---GDGVDQNITKAVF-------------------------------- 85
GC L Y ++I KA+
Sbjct: 64 DGCIILRETYSKVILKGSAKESIEKAIEHIATAKACKSNDAEKCKDLAEFYFNANDLKNA 123
Query: 86 --YYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYF 143
YY + C L N C + Y D K K + YY + C L G C LG +Y
Sbjct: 124 LEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDLEYYSKACELNYGDGCAILGDIYH 183
Query: 144 NGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKD 203
NG GV QN+ KA AC LN G C+ +G Y + V +DLKKA + + C L +
Sbjct: 184 NGEGVTQNFKKAFKYYSKACELNNGEGCSKLGGDYFFGESVTQDLKKAFGYYSKACELNE 243
Query: 204 GASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKA 263
+C +G Y G V ++ ++A K C L GC+ +A Y GKGV + +
Sbjct: 244 ALTCTLVGEFYRDGEGVTKDLKKAFEYSAKACELNDAKGCYALAAFYNEGKGVARGEKQM 303
Query: 264 ISYYKKGCTLGFSGSCKVLEE 284
++K C LG +C L+E
Sbjct: 304 TENFEKSCKLGLKEACDFLKE 324
Score = 53.1 bits (126), Expect = 4e-06
Identities = 49/183 (26%), Positives = 70/183 (37%), Gaps = 28/183 (15%)
Query: 125 RGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLS----------------KYACSLNYG 168
+GC K G LG + G + N + +FL + AC L+
Sbjct: 5 KGCQ-KSGFRVLCLGALCLGGLMAESNPKELIFLGITIYTDKDFTRAKEYFEKACELHDA 63
Query: 169 ISCNFVGYMYRNA--KGVQKD-LKKALANFK--RGCHLKDGASCVSLGYMYEVGMDVKQN 223
C + Y KG K+ ++KA+ + + C D C L Y D+K
Sbjct: 64 DGCIILRETYSKVILKGSAKESIEKAIEHIATAKACKSNDAEKCKDLAEFYFNANDLKN- 122
Query: 224 GEQALNLYKKGCYLKRGSGCHNVAVMYYTG-KGVPKDLDKAISYYKKGCTLGFSGSCKVL 282
AL Y K C L GC A Y KG+ KD K + YY K C L + C +L
Sbjct: 123 ---ALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKD-KKDLEYYSKACELNYGDGCAIL 178
Query: 283 EEV 285
++
Sbjct: 179 GDI 181
>gb|AAM66150.1|AF326629_1 (AF326629) JHP1437-like protein [Helicobacter pylori]
Length = 325
Score = 131 bits (330), Expect = 8e-30
Identities = 74/215 (34%), Positives = 98/215 (45%)
Query: 29 EKYFKMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYR 88
EK +A F D A+ +Y +SC L GC + Y D + K + YY
Sbjct: 104 EKCRDLAEFYFNVNDLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDLEYYS 163
Query: 89 RGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGV 148
+ C L CA LG +Y +G+GV K+L KA YY + C L G LG YF G GV
Sbjct: 164 KACELNYGDGCAILGDIYHNGEGVAKDLKKAFQYYSKACELNNGEGYSKLGGAYFFGEGV 223
Query: 149 KQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCV 208
Q+ KA AC LN ++C VG YR+ +GV KDLKKA + C L D C
Sbjct: 224 TQDLKKAFGYYSKACKLNEALTCTLVGEFYRDGEGVAKDLKKAFEYSAKACELNDAKGCY 283
Query: 209 SLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGC 243
+L + V + +Q +K C L C
Sbjct: 284 ALAAFFNEAKGVARGEKQTTENLEKSCKLGLKETC 318
Score = 119 bits (297), Expect = 6e-26
Identities = 71/250 (28%), Positives = 111/250 (44%), Gaps = 7/250 (2%)
Query: 35 ATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLR 94
A ++ ++ H A A ++C C L Y + + ++ A+ YY + C L
Sbjct: 81 ARESIEKALEHTATA---KACKSNDAEKCRDLAEFYFNVN----DLKNALEYYSKSCKLN 133
Query: 95 NHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAK 154
N C + Y D K K + YY + C L G C LG +Y NG GV ++ K
Sbjct: 134 NVEGCMLSATFYNDMIKGLKKDKKDLEYYSKACELNYGDGCAILGDIYHNGEGVAKDLKK 193
Query: 155 ALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMY 214
A AC LN G + +G Y +GV +DLKKA + + C L + +C +G Y
Sbjct: 194 AFQYYSKACELNNGEGYSKLGGAYFFGEGVTQDLKKAFGYYSKACKLNEALTCTLVGEFY 253
Query: 215 EVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLG 274
G V ++ ++A K C L GC+ +A + KGV + + +K C LG
Sbjct: 254 RDGEGVAKDLKKAFEYSAKACELNDAKGCYALAAFFNEAKGVARGEKQTTENLEKSCKLG 313
Query: 275 FSGSCKVLEE 284
+C + +E
Sbjct: 314 LKETCDIFKE 323
Score = 106 bits (265), Expect = 3e-22
Identities = 73/245 (29%), Positives = 101/245 (40%), Gaps = 41/245 (16%)
Query: 77 DQNITKAVFYYRRGCNLRNHLACASLGSMYEDG-------DGVQK--------------- 114
D+N T+A Y+ + C + CA L Y + ++K
Sbjct: 43 DKNFTRAKKYFEKACKSNDADGCAILREAYSKAIARENARESIEKALEHTATAKACKSND 102
Query: 115 ---------------NLPKAIYYYRRGCHLKGGVSCGSLGFMYFNG--TGVKQNYAKALF 157
+L A+ YY + C L C L ++N G+K++ +
Sbjct: 103 AEKCRDLAEFYFNVNDLKNALEYYSKSCKLNNVEGC-MLSATFYNDMIKGLKKDKKDLEY 161
Query: 158 LSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVG 217
SK AC LNYG C +G +Y N +GV KDLKKA + + C L +G LG Y G
Sbjct: 162 YSK-ACELNYGDGCAILGDIYHNGEGVAKDLKKAFQYYSKACELNNGEGYSKLGGAYFFG 220
Query: 218 MDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSG 277
V Q+ ++A Y K C L C V Y G+GV KDL KA Y K C L +
Sbjct: 221 EGVTQDLKKAFGYYSKACKLNEALTCTLVGEFYRDGEGVAKDLKKAFEYSAKACELNDAK 280
Query: 278 SCKVL 282
C L
Sbjct: 281 GCYAL 285
Score = 53.5 bits (127), Expect = 3e-06
Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 11/142 (7%)
Query: 150 QNYAKALFLSKYACSLNYGISCNFVGYMYRNA---KGVQKDLKKALANFK--RGCHLKDG 204
+N+ +A + AC N C + Y A + ++ ++KAL + + C D
Sbjct: 44 KNFTRAKKYFEKACKSNDADGCAILREAYSKAIARENARESIEKALEHTATAKACKSNDA 103
Query: 205 ASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTG-KGVPKDLDKA 263
C L Y D+K AL Y K C L GC A Y KG+ KD K
Sbjct: 104 EKCRDLAEFYFNVNDLKN----ALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKD-KKD 158
Query: 264 ISYYKKGCTLGFSGSCKVLEEV 285
+ YY K C L + C +L ++
Sbjct: 159 LEYYSKACELNYGDGCAILGDI 180
>gb|AAM66155.1|AF326633_1 (AF326633) JHP1437-like protein [Helicobacter pylori]
Length = 336
Score = 125 bits (315), Expect = 5e-28
Identities = 84/311 (27%), Positives = 127/311 (40%), Gaps = 38/311 (12%)
Query: 2 IKSWTKKWFLILFLMASCSSYLVATTGEK-YFKMATQAFKRGDYHKAVAFYKRSCNLRVG 60
+K K F +L L+A C L+A + K + + D+ +A +++++C L
Sbjct: 4 VKGCQKSGFRVLCLVALCLGGLMAESNPKELIFLGITIYTDKDFTRAKEYFEKACELHDA 63
Query: 61 VGCTSLGSMYED---GDGVDQNITKAVF-------------------------------- 85
GC L Y ++I KA+
Sbjct: 64 DGCIILRETYSKVILKGSAKESIEKAIEHIATAKACKSNDAEKCKDLAEFYFNANDLKNA 123
Query: 86 --YYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYF 143
YY + C L N C + Y D K K + YY + C L G C LG +Y
Sbjct: 124 LEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDLEYYSKACELNYGDGCAILGDIYH 183
Query: 144 NGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKD 203
NG GV QN+ KA AC LN G C+ +G Y + V +DLKKA + + C L +
Sbjct: 184 NGEGVTQNFKKAFKYYSKACELNNGEGCSKLGGDYFFGESVTQDLKKAFGYYSKACELNE 243
Query: 204 GASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKA 263
+C +G Y G V ++ ++A K C L GC+++A + GKGV + +
Sbjct: 244 ALTCTLVGEFYRDGEGVTKDLKKAFEYSAKACELNDAKGCYSLAAFFNEGKGVARGEKQM 303
Query: 264 ISYYKKGCTLG 274
+K C LG
Sbjct: 304 TENLEKSCKLG 314
Score = 103 bits (256), Expect = 3e-21
Identities = 66/214 (30%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 77 DQNITKAVFYYRRGCNLRNHLACASLGSMYED---GDGVQKNLPKAIYYYR--RGCHLKG 131
D++ T+A Y+ + C L + C L Y ++++ KAI + + C
Sbjct: 44 DKDFTRAKEYFEKACELHDADGCIILRETYSKVILKGSAKESIEKAIEHIATAKACKSND 103
Query: 132 GVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNA-KGVQKDLKK 190
C L YFN +K AL +C LN C Y + KG++KD KK
Sbjct: 104 AEKCKDLAEFYFNANDLKN----ALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKD-KK 158
Query: 191 ALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMY 250
L + + C L G C LG +Y G V QN ++A Y K C L G GC + Y
Sbjct: 159 DLEYYSKACELNYGDGCAILGDIYHNGEGVTQNFKKAFKYYSKACELNNGEGCSKLGGDY 218
Query: 251 YTGKGVPKDLDKAISYYKKGCTLGFSGSCKVLEE 284
+ G+ V +DL KA YY K C L + +C ++ E
Sbjct: 219 FFGESVTQDLKKAFGYYSKACELNEALTCTLVGE 252
Score = 52.0 bits (123), Expect = 8e-06
Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 11/142 (7%)
Query: 150 QNYAKALFLSKYACSLNYGISCNFVGYMYRNA--KGVQKD-LKKALANFK--RGCHLKDG 204
+++ +A + AC L+ C + Y KG K+ ++KA+ + + C D
Sbjct: 45 KDFTRAKEYFEKACELHDADGCIILRETYSKVILKGSAKESIEKAIEHIATAKACKSNDA 104
Query: 205 ASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTG-KGVPKDLDKA 263
C L Y D+K AL Y K C L GC A Y KG+ KD K
Sbjct: 105 EKCKDLAEFYFNANDLKN----ALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKD-KKD 159
Query: 264 ISYYKKGCTLGFSGSCKVLEEV 285
+ YY K C L + C +L ++
Sbjct: 160 LEYYSKACELNYGDGCAILGDI 181
>gb|AAM66149.1|AF326628_1 (AF326628) JHP1437-like protein [Helicobacter pylori]
Length = 310
Score = 125 bits (313), Expect = 8e-28
Identities = 67/182 (36%), Positives = 87/182 (46%)
Query: 29 EKYFKMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYR 88
EK +A F D A+ +Y +SC L GC + Y D + K + YY
Sbjct: 103 EKCKDLAEFYFNANDLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDLEYYS 162
Query: 89 RGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGV 148
+ C L CA LG +Y +G+GV +N KA YY + C L G C LG YF G V
Sbjct: 163 KACELNYGDGCAILGDIYHNGEGVTQNFKKAFKYYSKACELNNGEGCSKLGGDYFLGESV 222
Query: 149 KQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCV 208
Q+ KA AC LN ++C VG YR+ +GV KDLKKA + C L D C
Sbjct: 223 TQDLKKAFGYYSKACELNEALTCTLVGEFYRDGEGVTKDLKKAFEYSAKACELNDAKGCY 282
Query: 209 SL 210
+L
Sbjct: 283 AL 284
Score = 124 bits (312), Expect = 1e-27
Identities = 85/290 (29%), Positives = 131/290 (44%), Gaps = 14/290 (4%)
Query: 1 MIKSWTKKWFLILFLMASCSSYLVATTGEKYFKMA-TQAFKRGDYHKAVAFYKRSCNLRV 59
M++ K F +L L+A C L+A + K + + D+ +A +++++C L
Sbjct: 1 MLRGVKKAVFRVLCLVALCLGGLMAESNPKELIFSGITIYTDKDFTRAKEYFEKACRLND 60
Query: 60 GVGCTSLGSMYED---GDGVDQNITKAVFYYR--RGCNLRNHLACASLGSMYEDGDGVQK 114
GC L Y ++I KA+ + + C + C L Y + +
Sbjct: 61 ADGCAILREAYSKVILKGSARESIEKALEHTATAKACKSNDAEKCKDLAEFYFNAN---- 116
Query: 115 NLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGT--GVKQNYAKALFLSKYACSLNYGISCN 172
+L A+ YY + C L C L ++N G+K++ + SK AC LNYG C
Sbjct: 117 DLKNALEYYSKSCKLNNVEGC-MLSATFYNDMIKGLKKDKKDLEYYSK-ACELNYGDGCA 174
Query: 173 FVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYK 232
+G +Y N +GV ++ KKA + + C L +G C LG Y +G V Q+ ++A Y
Sbjct: 175 ILGDIYHNGEGVTQNFKKAFKYYSKACELNNGEGCSKLGGDYFLGESVTQDLKKAFGYYS 234
Query: 233 KGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGSCKVL 282
K C L C V Y G+GV KDL KA Y K C L + C L
Sbjct: 235 KACELNEALTCTLVGEFYRDGEGVTKDLKKAFEYSAKACELNDAKGCYAL 284
Score = 105 bits (262), Expect = 6e-22
Identities = 54/152 (35%), Positives = 76/152 (49%)
Query: 46 KAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSM 105
K + +Y ++C L G GC LG +Y +G+GV QN KA YY + C L N C+ LG
Sbjct: 156 KDLEYYSKACELNYGDGCAILGDIYHNGEGVTQNFKKAFKYYSKACELNNGEGCSKLGGD 215
Query: 106 YEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSL 165
Y G+ V ++L KA YY + C L ++C +G Y +G GV ++ KA S AC L
Sbjct: 216 YFLGESVTQDLKKAFGYYSKACELNEALTCTLVGEFYRDGEGVTKDLKKAFEYSAKACEL 275
Query: 166 NYGISCNFVGYMYRNAKGVQKDLKKALANFKR 197
N C + K +Q+ K KR
Sbjct: 276 NDAKGCYALAAFLMGVKALQRVKSKRPKTLKR 307
Score = 104 bits (259), Expect = 1e-21
Identities = 66/214 (30%), Positives = 97/214 (44%), Gaps = 11/214 (5%)
Query: 77 DQNITKAVFYYRRGCNLRNHLACASLGSMYED---GDGVQKNLPKAIYYYR--RGCHLKG 131
D++ T+A Y+ + C L + CA L Y ++++ KA+ + + C
Sbjct: 42 DKDFTRAKEYFEKACRLNDADGCAILREAYSKVILKGSARESIEKALEHTATAKACKSND 101
Query: 132 GVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNA-KGVQKDLKK 190
C L YFN +K AL +C LN C Y + KG++KD KK
Sbjct: 102 AEKCKDLAEFYFNANDLKN----ALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKD-KK 156
Query: 191 ALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMY 250
L + + C L G C LG +Y G V QN ++A Y K C L G GC + Y
Sbjct: 157 DLEYYSKACELNYGDGCAILGDIYHNGEGVTQNFKKAFKYYSKACELNNGEGCSKLGGDY 216
Query: 251 YTGKGVPKDLDKAISYYKKGCTLGFSGSCKVLEE 284
+ G+ V +DL KA YY K C L + +C ++ E
Sbjct: 217 FLGESVTQDLKKAFGYYSKACELNEALTCTLVGE 250
Score = 53.1 bits (126), Expect = 4e-06
Identities = 41/142 (28%), Positives = 60/142 (41%), Gaps = 11/142 (7%)
Query: 150 QNYAKALFLSKYACSLNYGISCNFVGYMYRNA--KG-VQKDLKKALANFK--RGCHLKDG 204
+++ +A + AC LN C + Y KG ++ ++KAL + + C D
Sbjct: 43 KDFTRAKEYFEKACRLNDADGCAILREAYSKVILKGSARESIEKALEHTATAKACKSNDA 102
Query: 205 ASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTG-KGVPKDLDKA 263
C L Y D+K AL Y K C L GC A Y KG+ KD K
Sbjct: 103 EKCKDLAEFYFNANDLKN----ALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKD-KKD 157
Query: 264 ISYYKKGCTLGFSGSCKVLEEV 285
+ YY K C L + C +L ++
Sbjct: 158 LEYYSKACELNYGDGCAILGDI 179
Score = 51.2 bits (121), Expect = 1e-05
Identities = 21/62 (33%), Positives = 34/62 (53%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
D KA +Y ++C L + CT +G Y DG+GV +++ KA Y + C L + C +L
Sbjct: 225 DLKKAFGYYSKACELNEALTCTLVGEFYRDGEGVTKDLKKAFEYSAKACELNDAKGCYAL 284
Query: 103 GS 104
+
Sbjct: 285 AA 286
>gb|AAL47060.1|AF326611_1 (AF326611) JHP318-like protein [Helicobacter pylori]
Length = 131
Score = 122 bits (306), Expect = 5e-27
Identities = 53/130 (40%), Positives = 83/130 (63%)
Query: 34 MATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNL 93
M ++ K D+ +A +++++CNL G GC SLG +YE+ GV++N+TK ++Y + C+L
Sbjct: 1 MGVKSNKAKDFTQAKKYFEKACNLNYGRGCGSLGDLYENDQGVEKNLTKVAYFYSKACDL 60
Query: 94 RNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYA 153
N + C +LG +YE G+GV+K+L KA Y + C L G C LGF+Y +G GV++N
Sbjct: 61 NNGVGCKNLGFLYEYGEGVEKDLIKATQYASKACDLNNGSGCDVLGFLYGSGKGVEKNLT 120
Query: 154 KALFLSKYAC 163
KA + AC
Sbjct: 121 KAAYFYSKAC 130
Score = 112 bits (281), Expect = 4e-24
Identities = 50/122 (40%), Positives = 75/122 (60%)
Query: 78 QNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGS 137
++ T+A Y+ + CNL C SLG +YE+ GV+KNL K Y+Y + C L GV C +
Sbjct: 9 KDFTQAKKYFEKACNLNYGRGCGSLGDLYENDQGVEKNLTKVAYFYSKACDLNNGVGCKN 68
Query: 138 LGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKR 197
LGF+Y G GV+++ KA + AC LN G C+ +G++Y + KGV+K+L KA + +
Sbjct: 69 LGFLYEYGEGVEKDLIKATQYASKACDLNNGSGCDVLGFLYGSGKGVEKNLTKAAYFYSK 128
Query: 198 GC 199
C
Sbjct: 129 AC 130
Score = 102 bits (254), Expect = 5e-21
Identities = 52/129 (40%), Positives = 74/129 (57%), Gaps = 4/129 (3%)
Query: 147 GVKQNYAKALFLSKY----ACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLK 202
GVK N AK +K AC+LNYG C +G +Y N +GV+K+L K + + C L
Sbjct: 2 GVKSNKAKDFTQAKKYFEKACNLNYGRGCGSLGDLYENDQGVEKNLTKVAYFYSKACDLN 61
Query: 203 DGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDK 262
+G C +LG++YE G V+++ +A K C L GSGC + +Y +GKGV K+L K
Sbjct: 62 NGVGCKNLGFLYEYGEGVEKDLIKATQYASKACDLNNGSGCDVLGFLYGSGKGVEKNLTK 121
Query: 263 AISYYKKGC 271
A +Y K C
Sbjct: 122 AAYFYSKAC 130
Score = 99.4 bits (246), Expect = 5e-20
Identities = 46/122 (37%), Positives = 69/122 (55%)
Query: 114 KNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNF 173
K+ +A Y+ + C+L G CGSLG +Y N GV++N K + AC LN G+ C
Sbjct: 9 KDFTQAKKYFEKACNLNYGRGCGSLGDLYENDQGVEKNLTKVAYFYSKACDLNNGVGCKN 68
Query: 174 VGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKK 233
+G++Y +GV+KDL KA + C L +G+ C LG++Y G V++N +A Y K
Sbjct: 69 LGFLYEYGEGVEKDLIKATQYASKACDLNNGSGCDVLGFLYGSGKGVEKNLTKAAYFYSK 128
Query: 234 GC 235
C
Sbjct: 129 AC 130
Score = 77.4 bits (189), Expect = 2e-13
Identities = 40/102 (39%), Positives = 52/102 (50%)
Query: 186 KDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHN 245
KD +A F++ C+L G C SLG +YE V++N + Y K C L G GC N
Sbjct: 9 KDFTQAKKYFEKACNLNYGRGCGSLGDLYENDQGVEKNLTKVAYFYSKACDLNNGVGCKN 68
Query: 246 VAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGSCKVLEEVIG 287
+ +Y G+GV KDL KA Y K C L C VL + G
Sbjct: 69 LGFLYEYGEGVEKDLIKATQYASKACDLNNGSGCDVLGFLYG 110
Score = 50.8 bits (120), Expect = 2e-05
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCN 92
D KA + ++C+L G GC LG +Y G GV++N+TKA ++Y + C+
Sbjct: 82 DLIKATQYASKACDLNNGSGCDVLGFLYGSGKGVEKNLTKAAYFYSKACD 131
>ref|NP_459646.1| (NC_003197) putative TPR repeat protein [Salmonella typhimurium
LT2]
gb|AAL19605.1| (AE008726) putative TPR repeat protein [Salmonella typhimurium LT2]
Length = 331
Score = 113 bits (283), Expect = 2e-24
Identities = 65/210 (30%), Positives = 110/210 (51%)
Query: 65 SLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYR 124
+LG + E G+ + +AV +YR+G ++LA +LG MY G GV++N +A+Y+++
Sbjct: 105 TLGWVQEGETGMAPDYAQAVAWYRKGAEQSHNLAQYNLGRMYHSGTGVEQNDTQALYWFK 164
Query: 125 RGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGV 184
+ S L +MY NG G ++N + A K + S +GY Y KG+
Sbjct: 165 QAALQGHCASQERLAYMYGNGKGCRKNLSLAALWYKKSALQESSYSQYQMGYCYYIGKGI 224
Query: 185 QKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCH 244
++D ++A+ F++ D + S+G+MY+ G V+QN AL + K SG +
Sbjct: 225 KQDYQQAIYWFRKAADQGDDDAYNSIGWMYKCGHGVEQNYSLALEWFHKSAECNNSSGWY 284
Query: 245 NVAVMYYTGKGVPKDLDKAISYYKKGCTLG 274
N+ MY G G +DL +A+ ++KK G
Sbjct: 285 NLGCMYRDGHGTAQDLQQALYWFKKAQPTG 314
Score = 107 bits (268), Expect = 1e-22
Identities = 62/194 (31%), Positives = 106/194 (53%), Gaps = 6/194 (3%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACAS- 101
DY +AVA+Y++ + +LG MY G GV+QN T+A++++++ L+ H CAS
Sbjct: 119 DYAQAVAWYRKGAEQSHNLAQYNLGRMYHSGTGVEQNDTQALYWFKQAA-LQGH--CASQ 175
Query: 102 --LGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLS 159
L MY +G G +KNL A +Y++ + S +G+ Y+ G G+KQ+Y +A++
Sbjct: 176 ERLAYMYGNGKGCRKNLSLAALWYKKSALQESSYSQYQMGYCYYIGKGIKQDYQQAIYWF 235
Query: 160 KYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMD 219
+ A + N +G+MY+ GV+++ AL F + + + +LG MY G
Sbjct: 236 RKAADQGDDDAYNSIGWMYKCGHGVEQNYSLALEWFHKSAECNNSSGWYNLGCMYRDGHG 295
Query: 220 VKQNGEQALNLYKK 233
Q+ +QAL +KK
Sbjct: 296 TAQDLQQALYWFKK 309
Score = 96.3 bits (238), Expect = 4e-19
Identities = 58/204 (28%), Positives = 103/204 (50%)
Query: 66 LGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRR 125
LG Y+D ++ T A+F+ + + A +LG + E G+ + +A+ +YR+
Sbjct: 70 LGLRYKDTPTDMKDNTLALFWSEKAAQQGHRHAFNTLGWVQEGETGMAPDYAQAVAWYRK 129
Query: 126 GCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQ 185
G ++ +LG MY +GTGV+QN +AL+ K A + S + YMY N KG +
Sbjct: 130 GAEQSHNLAQYNLGRMYHSGTGVEQNDTQALYWFKQAALQGHCASQERLAYMYGNGKGCR 189
Query: 186 KDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHN 245
K+L A +K+ + S +GY Y +G +KQ+ +QA+ ++K ++
Sbjct: 190 KNLSLAALWYKKSALQESSYSQYQMGYCYYIGKGIKQDYQQAIYWFRKAADQGDDDAYNS 249
Query: 246 VAVMYYTGKGVPKDLDKAISYYKK 269
+ MY G GV ++ A+ ++ K
Sbjct: 250 IGWMYKCGHGVEQNYSLALEWFHK 273
Score = 71.2 bits (173), Expect = 1e-11
Identities = 54/212 (25%), Positives = 98/212 (45%), Gaps = 5/212 (2%)
Query: 66 LGSMYEDG--DGVDQNITKAVFYYRRGCNLRNHLACAS-LGSMYEDGDGVQKNLPKAIYY 122
LG +Y D DG +++ K FY+ + + H LG Y+D K+ A+++
Sbjct: 33 LGRLYNDERIDGSEED--KLSFYWLQQAAEQGHCEAQYWLGLRYKDTPTDMKDNTLALFW 90
Query: 123 YRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAK 182
+ + +LG++ TG+ +YA+A+ + ++ ++ +G MY +
Sbjct: 91 SEKAAQQGHRHAFNTLGWVQEGETGMAPDYAQAVAWYRKGAEQSHNLAQYNLGRMYHSGT 150
Query: 183 GVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSG 242
GV+++ +AL FK+ AS L YMY G ++N A YKK +
Sbjct: 151 GVEQNDTQALYWFKQAALQGHCASQERLAYMYGNGKGCRKNLSLAALWYKKSALQESSYS 210
Query: 243 CHNVAVMYYTGKGVPKDLDKAISYYKKGCTLG 274
+ + YY GKG+ +D +AI +++K G
Sbjct: 211 QYQMGYCYYIGKGIKQDYQQAIYWFRKAADQG 242
Score = 57.8 bits (138), Expect = 2e-07
Identities = 32/116 (27%), Positives = 58/116 (49%)
Query: 47 AVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMY 106
A +YK+S +G Y G G+ Q+ +A++++R+ + + A S+G MY
Sbjct: 195 AALWYKKSALQESSYSQYQMGYCYYIGKGIKQDYQQAIYWFRKAADQGDDDAYNSIGWMY 254
Query: 107 EDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYA 162
+ G GV++N A+ ++ + +LG MY +G G Q+ +AL+ K A
Sbjct: 255 KCGHGVEQNYSLALEWFHKSAECNNSSGWYNLGCMYRDGHGTAQDLQQALYWFKKA 310
>ref|NP_224155.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71807 hypothetical protein jhp1437 - Helicobacter pylori (strain J99)
gb|AAD07008.1| (AE001566) putative [Helicobacter pylori J99]
Length = 256
Score = 100 bits (250), Expect = 2e-20
Identities = 65/216 (30%), Positives = 97/216 (44%), Gaps = 13/216 (6%)
Query: 77 DQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGV-----QKNLPKAIYYYRRG--CHL 129
D+N T+A Y+ + C + CA L +Y G + ++++ KA+ + C L
Sbjct: 43 DKNFTRAKKYFEKACKSNDADGCAILREVYSSGKAIARENARESIEKALEHTATAKVCKL 102
Query: 130 KGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNA-KGVQKDL 188
C L YFN +K AL +C LN C Y + KG++KD
Sbjct: 103 NDAEKCKDLAEFYFNVNDLKN----ALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKD- 157
Query: 189 KKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAV 248
KK L + + C L +G C LG Y G V ++ ++A K C L GC+ +A
Sbjct: 158 KKDLEYYSKACELNNGGGCSKLGGDYFFGEGVTKDFKKAFEYSAKACELNDAKGCYALAA 217
Query: 249 MYYTGKGVPKDLDKAISYYKKGCTLGFSGSCKVLEE 284
Y GKGV KD + +K C LG +C +L+E
Sbjct: 218 FYNEGKGVAKDEKQTTENLEKSCKLGLKEACDILKE 253
Score = 83.2 bits (204), Expect = 3e-15
Identities = 52/173 (30%), Positives = 74/173 (42%), Gaps = 7/173 (4%)
Query: 35 ATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLR 94
A ++ ++ H A A + C L C L Y + + ++ A+ YY + C L
Sbjct: 83 ARESIEKALEHTATA---KVCKLNDAEKCKDLAEFYFNVN----DLKNALEYYSKSCKLN 135
Query: 95 NHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAK 154
N C + Y D K K + YY + C L G C LG YF G GV +++ K
Sbjct: 136 NVEGCMLSATFYNDMIKGLKKDKKDLEYYSKACELNNGGGCSKLGGDYFFGEGVTKDFKK 195
Query: 155 ALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASC 207
A S AC LN C + Y KGV KD K+ N ++ C L +C
Sbjct: 196 AFEYSAKACELNDAKGCYALAAFYNEGKGVAKDEKQTTENLEKSCKLGLKEAC 248
Score = 78.2 bits (191), Expect = 1e-13
Identities = 52/192 (27%), Positives = 78/192 (40%), Gaps = 11/192 (5%)
Query: 114 KNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGV-----KQNYAKALFLSKYA--CSLN 166
KN +A Y+ + C C L +Y +G + +++ KAL + A C LN
Sbjct: 44 KNFTRAKKYFEKACKSNDADGCAILREVYSSGKAIARENARESIEKALEHTATAKVCKLN 103
Query: 167 YGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQ 226
C + Y N DLK AL + + C L + C+ Y + + ++
Sbjct: 104 DAEKCKDLAEFYFNVN----DLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKK 159
Query: 227 ALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGSCKVLEEVI 286
L Y K C L G GC + Y+ G+GV KD KA Y K C L + C L
Sbjct: 160 DLEYYSKACELNNGGGCSKLGGDYFFGEGVTKDFKKAFEYSAKACELNDAKGCYALAAFY 219
Query: 287 GKKSDDLQDDAQ 298
+ +D+ Q
Sbjct: 220 NEGKGVAKDEKQ 231
Score = 70.5 bits (171), Expect = 2e-11
Identities = 42/146 (28%), Positives = 63/146 (42%)
Query: 29 EKYFKMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYR 88
EK +A F D A+ +Y +SC L GC + Y D + K + YY
Sbjct: 106 EKCKDLAEFYFNVNDLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDLEYYS 165
Query: 89 RGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGV 148
+ C L N C+ LG Y G+GV K+ KA Y + C L C +L Y G GV
Sbjct: 166 KACELNNGGGCSKLGGDYFFGEGVTKDFKKAFEYSAKACELNDAKGCYALAAFYNEGKGV 225
Query: 149 KQNYAKALFLSKYACSLNYGISCNFV 174
++ + + +C L +C+ +
Sbjct: 226 AKDEKQTTENLEKSCKLGLKEACDIL 251
>ref|NP_586349.1| (NC_003237) similarity to SKT5 PROTEIN [Encephalitozoon cuniculi]
emb|CAD25953.1| (AL590450) similarity to SKT5 PROTEIN [Encephalitozoon cuniculi]
Length = 590
Score = 99.0 bits (245), Expect = 6e-20
Identities = 60/223 (26%), Positives = 105/223 (46%)
Query: 46 KAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSM 105
KA Y+ S + +LG+ YE+G GVD+++ KA Y++ +L
Sbjct: 227 KAFEMYRLSAKMENSYAQNALGNCYEEGKGVDRDLQKAFELYKKSALQGYPSGQCNLAFC 286
Query: 106 YEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSL 165
Y+ G G ++NL KA +Y+R + ++G+ Y NG G A+ K + +
Sbjct: 287 YQKGIGTERNLEKAFEWYKRAAIQGLSRAKHNIGYCYQNGLGTSPCMRSAVNWYKESAAE 346
Query: 166 NYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGE 225
+ S + +G Y++ GV KD + A+ F G + +SL Y G+ V+ + E
Sbjct: 347 DNKYSIHALGVCYQHGYGVPKDERLAVRYFSEGVRAGFDEAIISLALCYRSGIGVRISPE 406
Query: 226 QALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYK 268
++ L K+ + S + + Y G G PK+L KA+ +Y+
Sbjct: 407 KSFALMKRAAEMNNSSAQNTLGYYYEEGYGTPKNLRKAVKWYE 449
Score = 96.7 bits (239), Expect = 3e-19
Identities = 56/204 (27%), Positives = 96/204 (46%)
Query: 66 LGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRR 125
LG Y++G GV + AV YY G N + LG + G GV++N A+ ++
Sbjct: 139 LGVCYQEGYGVPVDPLLAVKYYSEGAYEGNTCSIGILGYCFLKGFGVERNEEIAVELFKY 198
Query: 126 GCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQ 185
K + ++GF Y G GV++N KA + + + + + N +G Y KGV
Sbjct: 199 ASEKKDSTALYNIGFCYEEGRGVERNLIKAFEMYRLSAKMENSYAQNALGNCYEEGKGVD 258
Query: 186 KDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHN 245
+DL+KA +K+ + +L + Y+ G+ ++N E+A YK+ HN
Sbjct: 259 RDLQKAFELYKKSALQGYPSGQCNLAFCYQKGIGTERNLEKAFEWYKRAAIQGLSRAKHN 318
Query: 246 VAVMYYTGKGVPKDLDKAISYYKK 269
+ Y G G + A+++YK+
Sbjct: 319 IGYCYQNGLGTSPCMRSAVNWYKE 342
Score = 95.1 bits (235), Expect = 9e-19
Identities = 55/175 (31%), Positives = 89/175 (50%)
Query: 102 LGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKY 161
LG Y++G GV + A+ YY G + S G LG+ + G GV++N A+ L KY
Sbjct: 139 LGVCYQEGYGVPVDPLLAVKYYSEGAYEGNTCSIGILGYCFLKGFGVERNEEIAVELFKY 198
Query: 162 ACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVK 221
A + +G+ Y +GV+++L KA ++ +++ + +LG YE G V
Sbjct: 199 ASEKKDSTALYNIGFCYEEGRGVERNLIKAFEMYRLSAKMENSYAQNALGNCYEEGKGVD 258
Query: 222 QNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFS 276
++ ++A LYKK SG N+A Y G G ++L+KA +YK+ G S
Sbjct: 259 RDLQKAFELYKKSALQGYPSGQCNLAFCYQKGIGTERNLEKAFEWYKRAAIQGLS 313
Score = 82.4 bits (202), Expect = 6e-15
Identities = 57/232 (24%), Positives = 99/232 (42%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
D KA YK+S G +L Y+ G G ++N+ KA +Y+R A ++
Sbjct: 260 DLQKAFELYKKSALQGYPSGQCNLAFCYQKGIGTERNLEKAFEWYKRAAIQGLSRAKHNI 319
Query: 103 GSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYA 162
G Y++G G + A+ +Y+ S +LG Y +G GV ++ A+
Sbjct: 320 GYCYQNGLGTSPCMRSAVNWYKESAAEDNKYSIHALGVCYQHGYGVPKDERLAVRYFSEG 379
Query: 163 CSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQ 222
+ + + YR+ GV+ +K+ A KR + + ++ +LGY YE G +
Sbjct: 380 VRAGFDEAIISLALCYRSGIGVRISPEKSFALMKRAAEMNNSSAQNTLGYYYEEGYGTPK 439
Query: 223 NGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLG 274
N +A+ Y+ N++ +Y G VP D + I + LG
Sbjct: 440 NLRKAVKWYETSAKRNNSWALFNLSTLYLNGNHVPADKELGIRLLIRSRDLG 491
Score = 82.0 bits (201), Expect = 7e-15
Identities = 66/277 (23%), Positives = 115/277 (40%), Gaps = 36/277 (12%)
Query: 46 KAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSM 105
KA +YKR+ + ++G Y++G G + AV +Y+ N + +LG
Sbjct: 299 KAFEWYKRAAIQGLSRAKHNIGYCYQNGLGTSPCMRSAVNWYKESAAEDNKYSIHALGVC 358
Query: 106 YEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSL 165
Y+ G GV K+ A+ Y+ G + SL Y +G GV+ + K+ L K A +
Sbjct: 359 YQHGYGVPKDERLAVRYFSEGVRAGFDEAIISLALCYRSGIGVRISPEKSFALMKRAAEM 418
Query: 166 NYGISCNFVGYMYRNAKGVQKDLKKALANFK----------------------------- 196
N + N +GY Y G K+L+KA+ ++
Sbjct: 419 NNSSAQNTLGYYYEEGYGTPKNLRKAVKWYETSAKRNNSWALFNLSTLYLNGNHVPADKE 478
Query: 197 -------RGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVM 249
R L + + +LGY +E G+ V ++ A Y + +++
Sbjct: 479 LGIRLLIRSRDLGNPRAMNTLGYCFEKGIVVGKDPRLAFEHYTQALMNGYSKAGYSLGRC 538
Query: 250 YYTGKGVPKDLDKAISYYKKGCTLGFSGSCKVLEEVI 286
Y +G G DLDKA+ Y+ K + G S + L++++
Sbjct: 539 YESGIGTEVDLDKALYYFYKASSAGEEASLQRLKKIL 575
>ref|NP_207422.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64598 hypothetical protein HP0628 - Helicobacter pylori (strain 26695)
gb|AAD07699.1| (AE000577) H. pylori predicted coding region HP0628 [Helicobacter
pylori 26695]
Length = 225
Score = 97.8 bits (242), Expect = 1e-19
Identities = 59/196 (30%), Positives = 95/196 (48%), Gaps = 6/196 (3%)
Query: 90 GCNLRNHLACASLGSMYEDGDGVQKN-LPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGV 148
GC+ + ACA+L MYE+ N A+ Y C ++C +LG+M+ NG+GV
Sbjct: 2 GCSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGV 61
Query: 149 KQNYAKALFLSKYACSLNYGISCNFVGYM--YRNAKGVQK-DLKKALANFKRGCHLKDGA 205
++Y KA+ K++C + C +G M N G+ K L + N+ C+ D
Sbjct: 62 PKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYL-ACNAGDMM 120
Query: 206 SCVSLGYMYEVG-MDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAI 264
C +LG++Y G + N A ++ C C+N+ V+Y G GVP+D +A+
Sbjct: 121 GCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRAL 180
Query: 265 SYYKKGCTLGFSGSCK 280
+ C GF SC+
Sbjct: 181 DLFSYACDNGFESSCR 196
Score = 87.0 bits (214), Expect = 2e-16
Identities = 59/195 (30%), Positives = 92/195 (46%), Gaps = 4/195 (2%)
Query: 55 CNLRVGVGCTSLGSMYEDGDGVDQNITK-AVFYYRRGCNLRNHLACASLGSMYEDGDGVQ 113
C+ C +L MYE+ D N + A+ Y C + LAC +LG M+ +G GV
Sbjct: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
Query: 114 KNLPKAIYYYRRGCHLKGGVSCGSLGFM--YFNGTGVKQNYAKALFLSKYACSLNYGISC 171
K+ KAI YY+ C + C +LG M N G+ + + L+ AC+ + C
Sbjct: 63 KDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGC 122
Query: 172 NFVGYMYRNAK-GVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNL 230
+G++Y N G + A F+ C SC +LG +Y+ G+ V Q+ ++AL+L
Sbjct: 123 ANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDL 182
Query: 231 YKKGCYLKRGSGCHN 245
+ C S C N
Sbjct: 183 FSYACDNGFESSCRN 197
Score = 76.3 bits (186), Expect = 4e-13
Identities = 53/184 (28%), Positives = 83/184 (44%), Gaps = 3/184 (1%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
D A+ Y +C + C +LG M+ +G GV ++ KA+ YY+ C N + C +L
Sbjct: 28 DKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNL 87
Query: 103 GSMYEDGD--GVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNG-TGVKQNYAKALFLS 159
G M + G+ K + C+ + C +LG++Y NG G N A
Sbjct: 88 GLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYF 147
Query: 160 KYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMD 219
+ AC SCN +G +Y+ GV +D ++AL F C +SC + G E +
Sbjct: 148 QMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESSCRNYGNFKEHLLR 207
Query: 220 VKQN 223
V N
Sbjct: 208 VNPN 211
Score = 74.7 bits (182), Expect = 1e-12
Identities = 56/177 (31%), Positives = 77/177 (42%), Gaps = 8/177 (4%)
Query: 126 GCHLKGGVSCGSLGFMYFNGTGVKQNYAK-ALFLSKYACSLNYGISCNFVGYMYRNAKGV 184
GC +C +L MY N N + AL L AC ++CN +G+M+ N GV
Sbjct: 2 GCSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGV 61
Query: 185 QKDLKKALANFKRGCHLKDGASCVSLGYMYEV----GMDVKQNGEQALNLYKKGCYLKRG 240
KD KA++ +K C + C +LG M V G+D Q + LN C
Sbjct: 62 PKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYL--ACNAGDM 119
Query: 241 SGCHNVAVMYYTGK-GVPKDLDKAISYYKKGCTLGFSGSCKVLEEVIGKKSDDLQDD 296
GC N+ +Y G G P + A Y++ C G GSC L + K QDD
Sbjct: 120 MGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDD 176
Score = 43.9 bits (102), Expect = 0.002
Identities = 29/102 (28%), Positives = 49/102 (47%), Gaps = 1/102 (0%)
Query: 54 SCNLRVGVGCTSLGSMYEDGD-GVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGV 112
+CN +GC +LG +Y +GD G N A Y++ C+ +C +LG +Y+ G GV
Sbjct: 113 ACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGV 172
Query: 113 QKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAK 154
++ +A+ + C SC + G + V NY +
Sbjct: 173 PQDDQRALDLFSYACDNGFESSCRNYGNFKEHLLRVNPNYGR 214
>gb|AAM66148.1|AF326627_1 (AF326627) JHP1437-like protein [Helicobacter pylori]
Length = 253
Score = 94.7 bits (234), Expect = 1e-18
Identities = 68/251 (27%), Positives = 110/251 (43%), Gaps = 14/251 (5%)
Query: 1 MIKSWTKKWFLILFLMASCSSYLVATTGEK-YFKMATQAFKRGDYHKAVAFYKRSCNLRV 59
M++ K F +L L+A C L+A + K + + D+ +A +++++C L
Sbjct: 1 MLRGVKKAVFRVLCLVALCLGGLMAESNPKELIFLGITIYTDKDFTRAKEYFEKACELHD 60
Query: 60 GVGCTSLGSMYED---GDGVDQNITKAVFY--YRRGCNLRNHLACASLGSMYEDGDGVQK 114
GC L Y ++I KA+ + + C + C L Y + +
Sbjct: 61 ADGCAILREAYSKVILKGSARESIEKALEHTATAKACKSNDAEKCKDLAEFYFNAN---- 116
Query: 115 NLPKAIYYYRRGCHLKGGVSCGSLGFMYFNG--TGVKQNYAKALFLSKYACSLNYGISCN 172
+L A+ YY + C L C L ++N G+K++ + SK AC LN ++C
Sbjct: 117 DLKNALEYYSKSCKLNNVEGC-MLSATFYNDMIKGLKKDKKDLEYYSK-ACELNEALTCT 174
Query: 173 FVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYK 232
VG YR+ +GV KDLKKA + C L D C +L Y G V ++ +Q +
Sbjct: 175 LVGEFYRDGEGVTKDLKKAFEYSAKACELNDAKGCYALAAFYNEGKGVAKDEKQTTENLE 234
Query: 233 KGCYLKRGSGC 243
K C L C
Sbjct: 235 KSCKLGLKEAC 245
Score = 93.6 bits (231), Expect = 2e-18
Identities = 60/214 (28%), Positives = 94/214 (43%), Gaps = 11/214 (5%)
Query: 77 DQNITKAVFYYRRGCNLRNHLACASLGSMYED---GDGVQKNLPKAIYYYR--RGCHLKG 131
D++ T+A Y+ + C L + CA L Y ++++ KA+ + + C
Sbjct: 42 DKDFTRAKEYFEKACELHDADGCAILREAYSKVILKGSARESIEKALEHTATAKACKSND 101
Query: 132 GVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNA-KGVQKDLKK 190
C L YFN +K AL +C LN C Y + KG++KD KK
Sbjct: 102 AEKCKDLAEFYFNANDLKN----ALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKD-KK 156
Query: 191 ALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMY 250
L + + C L + +C +G Y G V ++ ++A K C L GC+ +A Y
Sbjct: 157 DLEYYSKACELNEALTCTLVGEFYRDGEGVTKDLKKAFEYSAKACELNDAKGCYALAAFY 216
Query: 251 YTGKGVPKDLDKAISYYKKGCTLGFSGSCKVLEE 284
GKGV KD + +K C LG +C + +E
Sbjct: 217 NEGKGVAKDEKQTTENLEKSCKLGLKEACDIFKE 250
Score = 68.9 bits (167), Expect = 7e-11
Identities = 51/190 (26%), Positives = 73/190 (37%), Gaps = 9/190 (4%)
Query: 114 KNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGT---GVKQNYAKAL--FLSKYACSLNYG 168
K+ +A Y+ + C L C L Y +++ KAL + AC N
Sbjct: 43 KDFTRAKEYFEKACELHDADGCAILREAYSKVILKGSARESIEKALEHTATAKACKSNDA 102
Query: 169 ISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQAL 228
C + Y NA DLK AL + + C L + C+ Y + + ++ L
Sbjct: 103 EKCKDLAEFYFNAN----DLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDL 158
Query: 229 NLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGSCKVLEEVIGK 288
Y K C L C V Y G+GV KDL KA Y K C L + C L +
Sbjct: 159 EYYSKACELNEALTCTLVGEFYRDGEGVTKDLKKAFEYSAKACELNDAKGCYALAAFYNE 218
Query: 289 KSDDLQDDAQ 298
+D+ Q
Sbjct: 219 GKGVAKDEKQ 228
>gb|AAM66151.1|AF326630_1 (AF326630) JHP1437-like protein [Helicobacter pylori]
Length = 255
Score = 94.0 bits (232), Expect = 2e-18
Identities = 69/250 (27%), Positives = 107/250 (42%), Gaps = 14/250 (5%)
Query: 2 IKSWTKKWFLILFLMASCSSYLVATTGEKYFKMA-TQAFKRGDYHKAVAFYKRSCNLRVG 60
+K K F +L L A C L+A K + + D+ +A +++++C L
Sbjct: 4 VKGCQKSGFRVLCLGALCLGGLMAEPNPKELIFSGITIYTDKDFTRAKEYFEKACKLNDA 63
Query: 61 VGCTSLGSMYED---GDGVDQNITKAVFY--YRRGCNLRNHLACASLGSMYEDGDGVQKN 115
GCT L Y ++I KA+ + + C + C L Y + + +
Sbjct: 64 DGCTILREAYSKVILKGSARESIEKALEHTATAKACKSNDAEKCKDLAEFYFNAN----D 119
Query: 116 LPKAIYYYRRGCHLKGGVSCGSLGFMYFNG--TGVKQNYAKALFLSKYACSLNYGISCNF 173
L A+ YY + C L C L ++N G+K++ + SK AC LN ++C
Sbjct: 120 LKNALEYYSKSCKLNNVEGC-MLSATFYNDMIKGLKKDKKDLEYYSK-ACELNEALTCTL 177
Query: 174 VGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKK 233
VG YR+ +GV KDLKKA + C L D C +L Y G V + +Q +K
Sbjct: 178 VGEFYRDGEGVTKDLKKAFEYSAKACELNDAKGCYALAAFYNEGKGVAKGEKQTTENLEK 237
Query: 234 GCYLKRGSGC 243
C L C
Sbjct: 238 SCKLGLKEAC 247
Score = 90.9 bits (224), Expect = 2e-17
Identities = 59/214 (27%), Positives = 93/214 (42%), Gaps = 11/214 (5%)
Query: 77 DQNITKAVFYYRRGCNLRNHLACASLGSMYED---GDGVQKNLPKAIYYYR--RGCHLKG 131
D++ T+A Y+ + C L + C L Y ++++ KA+ + + C
Sbjct: 44 DKDFTRAKEYFEKACKLNDADGCTILREAYSKVILKGSARESIEKALEHTATAKACKSND 103
Query: 132 GVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNA-KGVQKDLKK 190
C L YFN +K AL +C LN C Y + KG++KD KK
Sbjct: 104 AEKCKDLAEFYFNANDLKN----ALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKD-KK 158
Query: 191 ALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMY 250
L + + C L + +C +G Y G V ++ ++A K C L GC+ +A Y
Sbjct: 159 DLEYYSKACELNEALTCTLVGEFYRDGEGVTKDLKKAFEYSAKACELNDAKGCYALAAFY 218
Query: 251 YTGKGVPKDLDKAISYYKKGCTLGFSGSCKVLEE 284
GKGV K + +K C LG +C +L+E
Sbjct: 219 NEGKGVAKGEKQTTENLEKSCKLGLKEACDILKE 252
Score = 60.8 bits (146), Expect = 2e-08
Identities = 28/93 (30%), Positives = 46/93 (49%)
Query: 46 KAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSM 105
K + +Y ++C L + CT +G Y DG+GV +++ KA Y + C L + C +L +
Sbjct: 158 KDLEYYSKACELNEALTCTLVGEFYRDGEGVTKDLKKAFEYSAKACELNDAKGCYALAAF 217
Query: 106 YEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSL 138
Y +G GV K + + C L +C L
Sbjct: 218 YNEGKGVAKGEKQTTENLEKSCKLGLKEACDIL 250
>ref|NP_415177.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
pir||B64799 hypothetical protein b0644 - Escherichia coli
gb|AAB40845.1| (U82598) hypothetical protein [Escherichia coli]
gb|AAC73745.1| (AE000169) orf, hypothetical protein [Escherichia coli K12]
dbj|BAA35291.1| (D90704) Sel-1 protein [Escherichia coli]
Length = 327
Score = 92.4 bits (228), Expect = 6e-18
Identities = 57/192 (29%), Positives = 98/192 (50%), Gaps = 2/192 (1%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
+Y +AV +Y+ + + +LG MY +G+GV ++ A F+Y++ + A +L
Sbjct: 117 NYKEAVVWYQIAAESGMSYAQNNLGWMYRNGNGVAKDYALAFFWYKQAALQGHSDAQNNL 176
Query: 103 GSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALF-LSKY 161
+YEDG GV +N A ++Y + + + + Y G GV Q+Y +A++ K
Sbjct: 177 ADLYEDGKGVAQNKTLAAFWYLKSAQQGNRHAQFQIAWDYNAGEGVDQDYKQAMYWYLKA 236
Query: 162 ACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVK 221
A + G N +GYMY++ +GV+KD + A F + D + +L MY G
Sbjct: 237 AAQGSVGAYVN-IGYMYKHGQGVEKDYQAAFEWFTKAAECNDATAWYNLAIMYHYGEGRP 295
Query: 222 QNGEQALNLYKK 233
+ QAL+LY+K
Sbjct: 296 VDLRQALDLYRK 307
Score = 88.2 bits (217), Expect = 1e-16
Identities = 66/266 (24%), Positives = 129/266 (47%), Gaps = 10/266 (3%)
Query: 28 GEKYFKMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYY 87
G+KY + + + D +A+ + K++ +LG + G+ N +AV +Y
Sbjct: 71 GQKYTEDKS---RHKDNEQAIFWLKKAALQGHTFASNALGWTLDRGEA--PNYKEAVVWY 125
Query: 88 RRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTG 147
+ A +LG MY +G+GV K+ A ++Y++ + +L +Y +G G
Sbjct: 126 QIAAESGMSYAQNNLGWMYRNGNGVAKDYALAFFWYKQAALQGHSDAQNNLADLYEDGKG 185
Query: 148 VKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASC 207
V QN A F + + + + Y +GV +D K+A+ + + +
Sbjct: 186 VAQNKTLAAFWYLKSAQQGNRHAQFQIAWDYNAGEGVDQDYKQAMYWYLKAAAQGSVGAY 245
Query: 208 VSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYY 267
V++GYMY+ G V+++ + A + K + +N+A+MY+ G+G P DL +A+ Y
Sbjct: 246 VNIGYMYKHGQGVEKDYQAAFEWFTKAAECNDATAWYNLAIMYHYGEGRPVDLRQALDLY 305
Query: 268 KKGCTLGFSGSCKVLEEVIGKKSDDL 293
+K + SG+ V +E+ ++++DL
Sbjct: 306 RK---VQSSGTRDVSQEI--RETEDL 326
>sp|P77234|YBEQ_ECOLI Hypothetical protein ybeQ
Length = 325
Score = 92.4 bits (228), Expect = 6e-18
Identities = 57/192 (29%), Positives = 98/192 (50%), Gaps = 2/192 (1%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
+Y +AV +Y+ + + +LG MY +G+GV ++ A F+Y++ + A +L
Sbjct: 115 NYKEAVVWYQIAAESGMSYAQNNLGWMYRNGNGVAKDYALAFFWYKQAALQGHSDAQNNL 174
Query: 103 GSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALF-LSKY 161
+YEDG GV +N A ++Y + + + + Y G GV Q+Y +A++ K
Sbjct: 175 ADLYEDGKGVAQNKTLAAFWYLKSAQQGNRHAQFQIAWDYNAGEGVDQDYKQAMYWYLKA 234
Query: 162 ACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVK 221
A + G N +GYMY++ +GV+KD + A F + D + +L MY G
Sbjct: 235 AAQGSVGAYVN-IGYMYKHGQGVEKDYQAAFEWFTKAAECNDATAWYNLAIMYHYGEGRP 293
Query: 222 QNGEQALNLYKK 233
+ QAL+LY+K
Sbjct: 294 VDLRQALDLYRK 305
Score = 88.2 bits (217), Expect = 1e-16
Identities = 66/266 (24%), Positives = 129/266 (47%), Gaps = 10/266 (3%)
Query: 28 GEKYFKMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYY 87
G+KY + + + D +A+ + K++ +LG + G+ N +AV +Y
Sbjct: 69 GQKYTEDKS---RHKDNEQAIFWLKKAALQGHTFASNALGWTLDRGEA--PNYKEAVVWY 123
Query: 88 RRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTG 147
+ A +LG MY +G+GV K+ A ++Y++ + +L +Y +G G
Sbjct: 124 QIAAESGMSYAQNNLGWMYRNGNGVAKDYALAFFWYKQAALQGHSDAQNNLADLYEDGKG 183
Query: 148 VKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASC 207
V QN A F + + + + Y +GV +D K+A+ + + +
Sbjct: 184 VAQNKTLAAFWYLKSAQQGNRHAQFQIAWDYNAGEGVDQDYKQAMYWYLKAAAQGSVGAY 243
Query: 208 VSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYY 267
V++GYMY+ G V+++ + A + K + +N+A+MY+ G+G P DL +A+ Y
Sbjct: 244 VNIGYMYKHGQGVEKDYQAAFEWFTKAAECNDATAWYNLAIMYHYGEGRPVDLRQALDLY 303
Query: 268 KKGCTLGFSGSCKVLEEVIGKKSDDL 293
+K + SG+ V +E+ ++++DL
Sbjct: 304 RK---VQSSGTRDVSQEI--RETEDL 324
>pir||T46587 hypothetical protein [imported] - Vogesella indigofera
gb|AAD54009.1|AF088857_1 (AF088857) hypothetical protein [Vogesella indigofera]
Length = 268
Score = 91.3 bits (225), Expect = 1e-17
Identities = 58/203 (28%), Positives = 104/203 (50%)
Query: 66 LGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRR 125
LG YE G GV Q+ KA +YR+ A +L +Y +G GV +N +A+ ++R+
Sbjct: 51 LGVRYEKGSGVPQDFAKAATWYRQAATQGMPEAQNNLAVLYLNGQGVNQNDAEALAWFRK 110
Query: 126 GCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQ 185
+ +LG M NG G +N +A+ ++ A + ++ + M R +G+
Sbjct: 111 AATQGQAEAQLNLGAMLMNGQGTPKNDDEAVVWTRKAAAQGQLMADYNLAIMMREGRGLP 170
Query: 186 KDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHN 245
+D A+A F++ + +LG MY++G V Q+ + AL+ +KG K N
Sbjct: 171 QDDAAAVALFRKVAEQGVAIAQSNLGLMYKLGRGVAQDYQLALSWLRKGVAQKSAMAQAN 230
Query: 246 VAVMYYTGKGVPKDLDKAISYYK 268
+ V+Y GKGV +D ++A+ +++
Sbjct: 231 LGVLYLEGKGVAQDDNEAVVWFR 253
Score = 80.9 bits (198), Expect = 2e-14
Identities = 53/202 (26%), Positives = 101/202 (49%), Gaps = 2/202 (0%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
D+ KA +Y+++ + +L +Y +G GV+QN +A+ ++R+ A +L
Sbjct: 64 DFAKAATWYRQAATQGMPEAQNNLAVLYLNGQGVNQNDAEALAWFRKAATQGQAEAQLNL 123
Query: 103 GSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYA 162
G+M +G G KN +A+ + R+ ++ +L M G G+ Q+ A A+ L +
Sbjct: 124 GAMLMNGQGTPKNDDEAVVWTRKAAAQGQLMADYNLAIMMREGRGLPQDDAAAVALFRKV 183
Query: 163 CSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQ 222
I+ + +G MY+ +GV +D + AL+ ++G K + +LG +Y G V Q
Sbjct: 184 AEQGVAIAQSNLGLMYKLGRGVAQDYQLALSWLRKGVAQKSAMAQANLGVLYLEGKGVAQ 243
Query: 223 NGEQALNLYK--KGCYLKRGSG 242
+ +A+ ++ G L G+G
Sbjct: 244 DDNEAVVWFRLAAGARLPAGAG 265
Score = 68.2 bits (165), Expect = 1e-10
Identities = 47/169 (27%), Positives = 79/169 (45%)
Query: 102 LGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKY 161
LG YE G GV ++ KA +YR+ + +L +Y NG GV QN A+AL +
Sbjct: 51 LGVRYEKGSGVPQDFAKAATWYRQAATQGMPEAQNNLAVLYLNGQGVNQNDAEALAWFRK 110
Query: 162 ACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVK 221
A + + +G M N +G K+ +A+ ++ + +L M G +
Sbjct: 111 AATQGQAEAQLNLGAMLMNGQGTPKNDDEAVVWTRKAAAQGQLMADYNLAIMMREGRGLP 170
Query: 222 QNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKG 270
Q+ A+ L++K N+ +MY G+GV +D A+S+ +KG
Sbjct: 171 QDDAAAVALFRKVAEQGVAIAQSNLGLMYKLGRGVAQDYQLALSWLRKG 219
Score = 45.1 bits (105), Expect = 0.001
Identities = 26/101 (25%), Positives = 45/101 (43%)
Query: 174 VGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKK 233
+G Y GV +D KA +++ + +L +Y G V QN +AL ++K
Sbjct: 51 LGVRYEKGSGVPQDFAKAATWYRQAATQGMPEAQNNLAVLYLNGQGVNQNDAEALAWFRK 110
Query: 234 GCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLG 274
+ N+ M G+G PK+ D+A+ + +K G
Sbjct: 111 AATQGQAEAQLNLGAMLMNGQGTPKNDDEAVVWTRKAAAQG 151
>ref|NP_223762.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71856 hypothetical protein jhp1045 - Helicobacter pylori (strain J99)
gb|AAD06623.1| (AE001532) putative [Helicobacter pylori J99]
Length = 256
Score = 90.9 bits (224), Expect = 2e-17
Identities = 67/253 (26%), Positives = 106/253 (41%), Gaps = 39/253 (15%)
Query: 31 YFKMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRG 90
Y +A+ +Y +A +FYK + + LG MYE+G GV ++ KAV Y+++
Sbjct: 33 YIYKGEEAYNNKEYERAASFYKSAIKNGESLAYILLGIMYENGRGVPKDYKKAVEYFQKA 92
Query: 91 CNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQ 150
+ +LG MY++G GV K+ KA+ Y+R + +LG MY G GV
Sbjct: 93 VDNDIPRGYNNLGVMYKEGKGVPKDEKKAVEYFRIATEKGYTNAYINLGIMYMEGRGVPS 152
Query: 151 NYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSL 210
NYAKA C F++ H + + + L
Sbjct: 153 NYAKA-------------TEC-----------------------FRKAMHKGNVEAYILL 176
Query: 211 GYMYEVGMD---VKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYY 267
G +Y G D ++ + ++A+ YK + ++ Y G GV KD KA Y
Sbjct: 177 GDIYYSGNDQLGIEPDKDKAVVYYKMAADVSSSRAYEGLSESYRYGLGVEKDKKKAEEYM 236
Query: 268 KKGCTLGFSGSCK 280
+K C +CK
Sbjct: 237 QKACDFDIDKNCK 249
Score = 74.3 bits (181), Expect = 2e-12
Identities = 54/176 (30%), Positives = 82/176 (45%), Gaps = 7/176 (3%)
Query: 114 KNLPKAIYYYRRGCHLKGGVSCGS--LGFMYFNGTGVKQNYAKALFLSKYACSLNYGISC 171
K +A +Y+ +K G S LG MY NG GV ++Y KA+ + A +
Sbjct: 44 KEYERAASFYKSA--IKNGESLAYILLGIMYENGRGVPKDYKKAVEYFQKAVDNDIPRGY 101
Query: 172 NFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLY 231
N +G MY+ KGV KD KKA+ F+ + ++LG MY G V N +A +
Sbjct: 102 NNLGVMYKEGKGVPKDEKKAVEYFRIATEKGYTNAYINLGIMYMEGRGVPSNYAKATECF 161
Query: 232 KKGCYLKRGSGCHNVAVMYYTGK---GVPKDLDKAISYYKKGCTLGFSGSCKVLEE 284
+K + + +YY+G G+ D DKA+ YYK + S + + L E
Sbjct: 162 RKAMHKGNVEAYILLGDIYYSGNDQLGIEPDKDKAVVYYKMAADVSSSRAYEGLSE 217
Score = 58.9 bits (141), Expect = 7e-08
Identities = 38/151 (25%), Positives = 69/151 (45%)
Query: 150 QNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVS 209
+ Y +A K A ++ +G MY N +GV KD KKA+ F++ +
Sbjct: 44 KEYERAASFYKSAIKNGESLAYILLGIMYENGRGVPKDYKKAVEYFQKAVDNDIPRGYNN 103
Query: 210 LGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKK 269
LG MY+ G V ++ ++A+ ++ + N+ +MY G+GVP + KA ++K
Sbjct: 104 LGVMYKEGKGVPKDEKKAVEYFRIATEKGYTNAYINLGIMYMEGRGVPSNYAKATECFRK 163
Query: 270 GCTLGFSGSCKVLEEVIGKKSDDLQDDAQND 300
G + +L ++ +D L + D
Sbjct: 164 AMHKGNVEAYILLGDIYYSGNDQLGIEPDKD 194
>gb|AAB47276.1| (U86608) 29 kDa protein [Helicobacter pylori]
Length = 256
Score = 89.7 bits (221), Expect = 4e-17
Identities = 66/253 (26%), Positives = 104/253 (41%), Gaps = 39/253 (15%)
Query: 31 YFKMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRG 90
Y +A+ +Y +A +FYK + + LG MYE+G GV ++ KA Y+++
Sbjct: 33 YIYKGEEAYNNKEYERAASFYKSAIKNGEPLAYVLLGIMYENGRGVPKDYKKAAEYFQKA 92
Query: 91 CNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQ 150
+ +LG MY++G GV K+ KA+ Y+R + +LG MY G GV
Sbjct: 93 VDNDIPRGYNNLGVMYKEGRGVPKDEKKAVEYFRIATEKGYANAYINLGIMYMEGRGVPS 152
Query: 151 NYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSL 210
NY KA C F++ H + + + L
Sbjct: 153 NYVKA-------------TEC-----------------------FRKAMHKGNVEAYILL 176
Query: 211 GYMYEVGMD---VKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYY 267
G +Y G D ++ + ++A+ YK + +A Y G GV KD KA Y
Sbjct: 177 GDIYYSGNDQLGIEPDKDKAIVYYKMAADMSSSRAYEGLAESYRYGLGVEKDKKKAEEYM 236
Query: 268 KKGCTLGFSGSCK 280
+K C +CK
Sbjct: 237 QKACDFDIDKNCK 249
Score = 72.4 bits (176), Expect = 6e-12
Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 3/174 (1%)
Query: 114 KNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNF 173
K +A +Y+ ++ LG MY NG GV ++Y KA + A + N
Sbjct: 44 KEYERAASFYKSAIKNGEPLAYVLLGIMYENGRGVPKDYKKAAEYFQKAVDNDIPRGYNN 103
Query: 174 VGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKK 233
+G MY+ +GV KD KKA+ F+ + ++LG MY G V N +A ++K
Sbjct: 104 LGVMYKEGRGVPKDEKKAVEYFRIATEKGYANAYINLGIMYMEGRGVPSNYVKATECFRK 163
Query: 234 GCYLKRGSGCHNVAVMYYTGK---GVPKDLDKAISYYKKGCTLGFSGSCKVLEE 284
+ + +YY+G G+ D DKAI YYK + S + + L E
Sbjct: 164 AMHKGNVEAYILLGDIYYSGNDQLGIEPDKDKAIVYYKMAADMSSSRAYEGLAE 217
Score = 57.8 bits (138), Expect = 2e-07
Identities = 38/151 (25%), Positives = 68/151 (44%)
Query: 150 QNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVS 209
+ Y +A K A ++ +G MY N +GV KD KKA F++ +
Sbjct: 44 KEYERAASFYKSAIKNGEPLAYVLLGIMYENGRGVPKDYKKAAEYFQKAVDNDIPRGYNN 103
Query: 210 LGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKK 269
LG MY+ G V ++ ++A+ ++ + N+ +MY G+GVP + KA ++K
Sbjct: 104 LGVMYKEGRGVPKDEKKAVEYFRIATEKGYANAYINLGIMYMEGRGVPSNYVKATECFRK 163
Query: 270 GCTLGFSGSCKVLEEVIGKKSDDLQDDAQND 300
G + +L ++ +D L + D
Sbjct: 164 AMHKGNVEAYILLGDIYYSGNDQLGIEPDKD 194
>ref|NP_207908.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
pir||E64659 conserved hypothetical secreted protein HP1117 - Helicobacter
pylori (strain 26695)
gb|AAD08161.1| (AE000618) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 256
Score = 88.6 bits (218), Expect = 8e-17
Identities = 66/253 (26%), Positives = 104/253 (41%), Gaps = 39/253 (15%)
Query: 31 YFKMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRG 90
Y +A+ +Y +A +FYK + + LG MYE+G GV ++ KA Y+++
Sbjct: 33 YIYKGEEAYNNKEYERAASFYKSAIKNGEPLAYVLLGIMYENGRGVPKDEKKAAEYFQKA 92
Query: 91 CNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQ 150
+ +LG MY++G GV K+ KA+ Y+R + +LG MY G GV
Sbjct: 93 VDNDIPRGYNNLGVMYKEGRGVPKDEKKAVEYFRIATEKGYTNAYINLGIMYMEGRGVPS 152
Query: 151 NYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSL 210
NY KA C F++ H + + + L
Sbjct: 153 NYVKA-------------TEC-----------------------FRKAMHKGNVEAYILL 176
Query: 211 GYMYEVGMD---VKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYY 267
G +Y G D ++ + ++A+ YK + +A Y G GV KD KA Y
Sbjct: 177 GDIYYSGNDQLGIEPDKDKAIVYYKMAADMSSSRAYEGLAESYQYGLGVEKDKKKAEEYM 236
Query: 268 KKGCTLGFSGSCK 280
+K C +CK
Sbjct: 237 QKACDFDIDKNCK 249
Score = 68.2 bits (165), Expect = 1e-10
Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 3/174 (1%)
Query: 114 KNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNF 173
K +A +Y+ ++ LG MY NG GV ++ KA + A + N
Sbjct: 44 KEYERAASFYKSAIKNGEPLAYVLLGIMYENGRGVPKDEKKAAEYFQKAVDNDIPRGYNN 103
Query: 174 VGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKK 233
+G MY+ +GV KD KKA+ F+ + ++LG MY G V N +A ++K
Sbjct: 104 LGVMYKEGRGVPKDEKKAVEYFRIATEKGYTNAYINLGIMYMEGRGVPSNYVKATECFRK 163
Query: 234 GCYLKRGSGCHNVAVMYYTGK---GVPKDLDKAISYYKKGCTLGFSGSCKVLEE 284
+ + +YY+G G+ D DKAI YYK + S + + L E
Sbjct: 164 AMHKGNVEAYILLGDIYYSGNDQLGIEPDKDKAIVYYKMAADMSSSRAYEGLAE 217
Score = 56.2 bits (134), Expect = 4e-07
Identities = 38/151 (25%), Positives = 68/151 (44%)
Query: 150 QNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVS 209
+ Y +A K A ++ +G MY N +GV KD KKA F++ +
Sbjct: 44 KEYERAASFYKSAIKNGEPLAYVLLGIMYENGRGVPKDEKKAAEYFQKAVDNDIPRGYNN 103
Query: 210 LGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKK 269
LG MY+ G V ++ ++A+ ++ + N+ +MY G+GVP + KA ++K
Sbjct: 104 LGVMYKEGRGVPKDEKKAVEYFRIATEKGYTNAYINLGIMYMEGRGVPSNYVKATECFRK 163
Query: 270 GCTLGFSGSCKVLEEVIGKKSDDLQDDAQND 300
G + +L ++ +D L + D
Sbjct: 164 AMHKGNVEAYILLGDIYYSGNDQLGIEPDKD 194
>ref|NP_286370.1| (NC_002655) ybeQ gene product [Escherichia coli O157:H7 EDL933]
ref|NP_308709.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
gb|AAG54978.1|AE005243_7 (AE005243) ybeQ gene product [Escherichia coli O157:H7 EDL933]
dbj|BAB34105.1| (AP002552) hypothetical protein [Escherichia coli O157:H7]
Length = 195
Score = 87.8 bits (216), Expect = 1e-16
Identities = 54/170 (31%), Positives = 88/170 (51%), Gaps = 2/170 (1%)
Query: 65 SLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYR 124
+LG MY +G+G Q+ T A F+Y++ + A +L +YEDG GV +N A ++Y
Sbjct: 7 NLGWMYRNGNGAAQDYTLAFFWYKQAALQGHSDAQNNLADLYEDGKGVAQNETLAAFWYL 66
Query: 125 RGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALF-LSKYACSLNYGISCNFVGYMYRNAKG 183
+ + + + Y G GV Q+Y +A++ K A + G N +GYMY++ +G
Sbjct: 67 KSAQQGNRHAQFQIAWDYNAGEGVDQDYKQAMYWYLKAAAQGSVGAYVN-IGYMYKHGQG 125
Query: 184 VQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKK 233
V+KD + A F + D + +L MY G + QAL+LY+K
Sbjct: 126 VEKDYQAAFEWFTKAAECNDATAWYNLAIMYHYGEGRPVDLRQALDLYRK 175
Score = 79.0 bits (193), Expect = 6e-14
Identities = 50/193 (25%), Positives = 99/193 (50%), Gaps = 5/193 (2%)
Query: 101 SLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSK 160
+LG MY +G+G ++ A ++Y++ + +L +Y +G GV QN A F
Sbjct: 7 NLGWMYRNGNGAAQDYTLAFFWYKQAALQGHSDAQNNLADLYEDGKGVAQNETLAAFWYL 66
Query: 161 YACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDV 220
+ + + + Y +GV +D K+A+ + + + V++GYMY+ G V
Sbjct: 67 KSAQQGNRHAQFQIAWDYNAGEGVDQDYKQAMYWYLKAAAQGSVGAYVNIGYMYKHGQGV 126
Query: 221 KQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGSCK 280
+++ + A + K + +N+A+MY+ G+G P DL +A+ Y+K + SG+
Sbjct: 127 EKDYQAAFEWFTKAAECNDATAWYNLAIMYHYGEGRPVDLRQALDLYRK---VQSSGTRD 183
Query: 281 VLEEVIGKKSDDL 293
V +E+ ++++DL
Sbjct: 184 VSQEI--RETEDL 194
Score = 45.8 bits (107), Expect = 6e-04
Identities = 31/107 (28%), Positives = 46/107 (42%)
Query: 172 NFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLY 231
N +G+MYRN G +D A +K+ + +L +YE G V QN A Y
Sbjct: 6 NNLGWMYRNGNGAAQDYTLAFFWYKQAALQGHSDAQNNLADLYEDGKGVAQNETLAAFWY 65
Query: 232 KKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGS 278
K +A Y G+GV +D +A+ +Y K G G+
Sbjct: 66 LKSAQQGNRHAQFQIAWDYNAGEGVDQDYKQAMYWYLKAAAQGSVGA 112
>ref|NP_207134.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64561 invalid gene - Helicobacter pylori (strain 26695)
gb|AAD07408.1| (AE000551) H. pylori predicted coding region HP0336 [Helicobacter
pylori 26695]
Length = 138
Score = 85.9 bits (211), Expect = 5e-16
Identities = 53/135 (39%), Positives = 69/135 (50%), Gaps = 6/135 (4%)
Query: 109 GDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYG 168
G V+K+L KAI YY + C L C SL N KQ + +LSK AC LN G
Sbjct: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSL---VSNSQINKQKLFQ--YLSK-ACELNSG 57
Query: 169 ISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQAL 228
C F+G Y N K V+KDL+KA + + C L D C+ LGY G V +N +QA+
Sbjct: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
Query: 229 NLYKKGCYLKRGSGC 243
++K C L C
Sbjct: 118 KTFEKACRLGSEDAC 132
Score = 75.9 bits (185), Expect = 5e-13
Identities = 46/135 (34%), Positives = 61/135 (45%), Gaps = 6/135 (4%)
Query: 73 GDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGG 132
G V +++ KA+ YY + C L C SL S Q N K Y + C L G
Sbjct: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVS------NSQINKQKLFQYLSKACELNSG 57
Query: 133 VSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKAL 192
C LG Y NG VK++ KA AC LN C +GY KGV K+ K+A+
Sbjct: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
Query: 193 ANFKRGCHLKDGASC 207
F++ C L +C
Sbjct: 118 KTFEKACRLGSEDAC 132
Score = 71.6 bits (174), Expect = 1e-11
Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
D KA+ +Y ++C L GC SL S + N K Y + C L + C L
Sbjct: 10 DLKKAIQYYVKACELNEMFGCLSLVSNSQI------NKQKLFQYLSKACELNSGNGCRFL 63
Query: 103 GSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYA 162
G YE+G V+K+L KA YY + C L C LG+ + G GV +N +A+ + A
Sbjct: 64 GDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123
Query: 163 CSLNYGISCNFV 174
C L +C +
Sbjct: 124 CRLGSEDACGIL 135
Score = 69.3 bits (168), Expect = 5e-11
Identities = 43/138 (31%), Positives = 61/138 (44%), Gaps = 6/138 (4%)
Query: 145 GTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDG 204
G VK++ KA+ AC LN C + Q + +K + C L G
Sbjct: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSL------VSNSQINKQKLFQYLSKACELNSG 57
Query: 205 ASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAI 264
C LG YE G VK++ +A Y K C L GC + Y GKGV K+ +A+
Sbjct: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
Query: 265 SYYKKGCTLGFSGSCKVL 282
++K C LG +C +L
Sbjct: 118 KTFEKACRLGSEDACGIL 135
>gb|AAL47063.1|AF326616_1 (AF326616) JHP1024-like protein [Helicobacter pylori]
Length = 122
Score = 84.0 bits (206), Expect = 2e-15
Identities = 41/121 (33%), Positives = 69/121 (56%), Gaps = 2/121 (1%)
Query: 1 MIKSWTKKWF--LILFLMASCSSYLVATTGEKYFKMATQAFKRGDYHKAVAFYKRSCNLR 58
M++++ K F L L L + ++ F + + +K DY KA +++++C L+
Sbjct: 1 MLENFKKAIFRALCLLLCVDWGGLMAEPNPKELFDLGVENYKAKDYIKAKKYFEKACELK 60
Query: 59 VGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPK 118
G GC +LG +Y G+GV+++ KA + + C+L N C +LG +YE G GV+KNL K
Sbjct: 61 DGGGCFNLGRLYYYGEGVEKDFKKAFALFEKACDLNNSGGCGTLGMLYEFGQGVEKNLTK 120
Query: 119 A 119
A
Sbjct: 121 A 121
Score = 66.6 bits (161), Expect = 3e-10
Identities = 31/78 (39%), Positives = 47/78 (59%)
Query: 186 KDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHN 245
KD KA F++ C LKDG C +LG +Y G V+++ ++A L++K C L GC
Sbjct: 44 KDYIKAKKYFEKACELKDGGGCFNLGRLYYYGEGVEKDFKKAFALFEKACDLNNSGGCGT 103
Query: 246 VAVMYYTGKGVPKDLDKA 263
+ ++Y G+GV K+L KA
Sbjct: 104 LGMLYEFGQGVEKNLTKA 121
Score = 65.1 bits (157), Expect = 9e-10
Identities = 31/78 (39%), Positives = 47/78 (59%)
Query: 114 KNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNF 173
K+ KA Y+ + C LK G C +LG +Y+ G GV++++ KA L + AC LN C
Sbjct: 44 KDYIKAKKYFEKACELKDGGGCFNLGRLYYYGEGVEKDFKKAFALFEKACDLNNSGGCGT 103
Query: 174 VGYMYRNAKGVQKDLKKA 191
+G +Y +GV+K+L KA
Sbjct: 104 LGMLYEFGQGVEKNLTKA 121
Score = 63.2 bits (152), Expect = 4e-09
Identities = 28/74 (37%), Positives = 43/74 (57%)
Query: 82 KAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFM 141
KA Y+ + C L++ C +LG +Y G+GV+K+ KA + + C L CG+LG +
Sbjct: 48 KAKKYFEKACELKDGGGCFNLGRLYYYGEGVEKDFKKAFALFEKACDLNNSGGCGTLGML 107
Query: 142 YFNGTGVKQNYAKA 155
Y G GV++N KA
Sbjct: 108 YEFGQGVEKNLTKA 121
Score = 60.1 bits (144), Expect = 3e-08
Identities = 29/74 (39%), Positives = 43/74 (57%)
Query: 150 QNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVS 209
++Y KA + AC L G C +G +Y +GV+KD KKA A F++ C L + C +
Sbjct: 44 KDYIKAKKYFEKACELKDGGGCFNLGRLYYYGEGVEKDFKKAFALFEKACDLNNSGGCGT 103
Query: 210 LGYMYEVGMDVKQN 223
LG +YE G V++N
Sbjct: 104 LGMLYEFGQGVEKN 117
Score = 57.4 bits (137), Expect = 2e-07
Identities = 25/57 (43%), Positives = 34/57 (58%)
Query: 226 QALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGSCKVL 282
+A ++K C LK G GC N+ +YY G+GV KD KA + ++K C L SG C L
Sbjct: 48 KAKKYFEKACELKDGGGCFNLGRLYYYGEGVEKDFKKAFALFEKACDLNNSGGCGTL 104
>ref|NP_281603.1| (NC_002163) putative periplasmic protein [Campylobacter jejuni]
pir||C81385 probable periplasmic protein Cj0413 [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB74249.1| (AL139075) putative periplasmic protein [Campylobacter jejuni]
Length = 234
Score = 83.2 bits (204), Expect = 3e-15
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 8/176 (4%)
Query: 118 KAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYM 177
KA ++ C +C SL FM+ + GV ++ +A AC L +C+ + +
Sbjct: 34 KAYEIFKSLCEKDISKACFSLAFMHESARGVSKDLNQAYKFYDKACKLGLANACSNMALL 93
Query: 178 YRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYL 237
+N +G + + AL F + C L + SC ++ YE D G+ A + YK+ C L
Sbjct: 94 LQN-QGYENE---ALLAFNKACTLGESLSCNNIALFYEKEKD----GQMASSFYKRSCDL 145
Query: 238 KRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGSCKVLEEVIGKKSDDL 293
K C+ + +Y G+ V + A+++Y K CTLGF +C +L + DL
Sbjct: 146 KNARACYQLGSLYDKGELVKASVKSALAFYSKSCTLGFGEACYLLGRYNQLEKQDL 201
Score = 72.8 bits (177), Expect = 5e-12
Identities = 56/234 (23%), Positives = 103/234 (43%), Gaps = 17/234 (7%)
Query: 10 FLILFLMASCSSYLVATTGEKYFKMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSM 69
FL LFL + S + E+ K+ ++ + KA +K C + C SL M
Sbjct: 4 FLTLFLFFN--SLFALSELEEGLKL----YEANKFDKAYEIFKSLCEKDISKACFSLAFM 57
Query: 70 YEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHL 129
+E GV +++ +A +Y + C L AC+++ + ++ Q +A+ + + C L
Sbjct: 58 HESARGVSKDLNQAYKFYDKACKLGLANACSNMALLLQN----QGYENEALLAFNKACTL 113
Query: 130 KGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLK 189
+SC ++ Y +++ A K +C L +C +G +Y + V+ +K
Sbjct: 114 GESLSCNNIALFYEK----EKDGQMASSFYKRSCDLKNARACYQLGSLYDKGELVKASVK 169
Query: 190 KALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGC 243
ALA + + C L G +C LG ++ KQ+ +A + C K C
Sbjct: 170 SALAFYSKSCTLGFGEACYLLGRYNQL---EKQDLTKAKRYFGMACDQKHQEAC 220
Score = 64.3 bits (155), Expect = 2e-09
Identities = 42/152 (27%), Positives = 76/152 (49%), Gaps = 9/152 (5%)
Query: 34 MATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNL 93
MA +G ++A+ + ++C L + C ++ YE +++ A +Y+R C+L
Sbjct: 90 MALLLQNQGYENEALLAFNKACTLGESLSCNNIALFYEK----EKDGQMASSFYKRSCDL 145
Query: 94 RNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYA 153
+N AC LGS+Y+ G+ V+ ++ A+ +Y + C L G +C LG +N KQ+
Sbjct: 146 KNARACYQLGSLYDKGELVKASVKSALAFYSKSCTLGFGEACYLLG--RYNQL-EKQDLT 202
Query: 154 KALFLSKYACSLNYGISCNFVGYMYRNAKGVQ 185
KA AC + +C Y N+K ++
Sbjct: 203 KAKRYFGMACDQKHQEAC--AAYKELNSKDIE 232
Score = 45.4 bits (106), Expect = 8e-04
Identities = 18/55 (32%), Positives = 32/55 (57%)
Query: 225 EQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGSC 279
++A ++K C C ++A M+ + +GV KDL++A +Y K C LG + +C
Sbjct: 33 DKAYEIFKSLCEKDISKACFSLAFMHESARGVSKDLNQAYKFYDKACKLGLANAC 87
>emb|CAB65792.2| (AL109657) dJ842G6.2 (novel protein imilar to SEL1L (sel-1
(suppressor of lin-12, C.elegans)-like)) [Homo sapiens]
Length = 505
Score = 80.9 bits (198), Expect = 2e-14
Identities = 67/238 (28%), Positives = 106/238 (44%), Gaps = 13/238 (5%)
Query: 65 SLGSMYEDG-DGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDG-VQKNLPKAIYY 122
SLG ++ G G+DQ+ KA+ Y+ + + A A +G MY +G+ V +N A Y
Sbjct: 119 SLGQLHLIGRKGLDQDYYKALHYFLKAAKAGSANAMAFIGKMYLEGNAAVPQNNATAFKY 178
Query: 123 YRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAK 182
+ + LG +YF+G GV NYA+AL + A + + +G+MY +
Sbjct: 179 FSMAASKGNAIGLHGLGLLYFHGKGVPLNYAEALKYFQKAAEKGWPDAQFQLGFMYYSGS 238
Query: 183 GVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSG 242
G+ KD K A F + L MY G V ++ A+ LYK C L G
Sbjct: 239 GIWKDYKLAFKYFYLASQSGQPLAIYYLAKMYATGTGVVRSCRTAVELYKGVCEL--GHW 296
Query: 243 CHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGF----SGSCKVLEEVIGKKSDDLQDD 296
Y+ K D+D ++ Y +G+ S S +LE KK++ L+ +
Sbjct: 297 AEKFLTAYFAYK--DGDIDSSLVQYALLAEMGYEVAQSNSAFILE---SKKANILEKE 349
Score = 73.9 bits (180), Expect = 2e-12
Identities = 62/262 (23%), Positives = 108/262 (40%), Gaps = 37/262 (14%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGD-GVDQNITKAVFYYRRGCNLRNHLACAS 101
DY+KA+ ++ ++ +G MY +G+ V QN A Y+ + N +
Sbjct: 134 DYYKALHYFLKAAKAGSANAMAFIGKMYLEGNAAVPQNNATAFKYFSMAASKGNAIGLHG 193
Query: 102 LGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKY 161
LG +Y G GV N +A+ Y+++ + LGFMY++G+G+ ++Y A
Sbjct: 194 LGLLYFHGKGVPLNYAEALKYFQKAAEKGWPDAQFQLGFMYYSGSGIWKDYKLAFKYFYL 253
Query: 162 ACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHL--------------KDG--- 204
A ++ ++ MY GV + + A+ +K C L KDG
Sbjct: 254 ASQSGQPLAIYYLAKMYATGTGVVRSCRTAVELYKGVCELGHWAEKFLTAYFAYKDGDID 313
Query: 205 ASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKR-----------------GSGCHNVA 247
+S V + E+G +V Q+ + KK L++ G+ V
Sbjct: 314 SSLVQYALLAEMGYEVAQSNSAFILESKKANILEKEKMYPMALLLWNRAAIQGNAFARVK 373
Query: 248 V--MYYTGKGVPKDLDKAISYY 267
+ +Y G G KD A ++Y
Sbjct: 374 IGDYHYYGYGTKKDYQTAATHY 395
Score = 49.3 bits (116), Expect = 5e-05
Identities = 57/258 (22%), Positives = 90/258 (34%), Gaps = 37/258 (14%)
Query: 47 AVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMY 106
A ++ + + +G LG +Y G GV N +A+ Y+++ A LG MY
Sbjct: 175 AFKYFSMAASKGNAIGLHGLGLLYFHGKGVPLNYAEALKYFQKAAEKGWPDAQFQLGFMY 234
Query: 107 EDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLN 166
G G+ K+ A Y+ ++ L MY GTGV ++ A+ L K C L
Sbjct: 235 YSGSGIWKDYKLAFKYFYLASQSGQPLAIYYLAKMYATGTGVVRSCRTAVELYKGVCELG 294
Query: 167 Y---------------GISCNFVGYMYRNAKGVQ---------------------KDLKK 190
+ I + V Y G + K
Sbjct: 295 HWAEKFLTAYFAYKDGDIDSSLVQYALLAEMGYEVAQSNSAFILESKKANILEKEKMYPM 354
Query: 191 ALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCY-LKRGSGCHNVAVM 249
AL + R + + V +G + G K++ + A Y N+A M
Sbjct: 355 ALLLWNRAAIQGNAFARVKIGDYHYYGYGTKKDYQTAATHYSIAANKYHNAQAMFNLAYM 414
Query: 250 YYTGKGVPKDLDKAISYY 267
Y G G+ KD+ A Y
Sbjct: 415 YEHGLGITKDIHLARRLY 432
>ref|NP_460716.1| (NC_003197) putative TPR repeat protein [Salmonella typhimurium
LT2]
gb|AAL20675.1| (AE008778) putative TPR repeat protein [Salmonella typhimurium LT2]
Length = 509
Score = 80.1 bits (196), Expect = 3e-14
Identities = 61/254 (24%), Positives = 106/254 (41%), Gaps = 34/254 (13%)
Query: 66 LGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRR 125
LG MY G GV Q+ + R+ + A LG Y G+GV ++ +A+Y+
Sbjct: 176 LGVMYAHGQGVPQDYQQTAILMRKAAENMYYPAQLYLGVAYFYGEGVPQDYRQAVYWLNE 235
Query: 126 GC---HLKGGVSCGSL-------------------------------GFMYFNGTGVKQN 151
G + G + +L G Y+NG + ++
Sbjct: 236 GIPGSYTPGHIPLNALYDKAHPADRVHSQTWYRKTAQRVMAKVQYNFGVWYYNGYHLLKD 295
Query: 152 YAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLG 211
+ AL + A + + + +G M+ +GV +D ++ALA +++ A+ LG
Sbjct: 296 HNLALEWYRRAAAQGLAEAQDAIGVMFMQGEGVSQDYQQALAWYRKAARQGLPAAQTHLG 355
Query: 212 YMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGC 271
M G V Q+ QA+ Y+K + + V Y TG+GVP++ A+ +Y K
Sbjct: 356 IMSAFGRGVAQSDRQAIAWYRKAAKQDFAKAQYQLGVAYSTGRGVPENSRNALKWYLKAA 415
Query: 272 TLGFSGSCKVLEEV 285
GF+ + L E+
Sbjct: 416 EQGFTPAQSALGEI 429
Score = 65.9 bits (159), Expect = 6e-10
Identities = 60/244 (24%), Positives = 101/244 (40%), Gaps = 21/244 (8%)
Query: 46 KAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHL-------- 97
KA+ +Y+++ L LG Y GDG QN A+ +YR+ + N
Sbjct: 109 KALEWYRKAAELGDSSTQEILGDAYMYGDGFPQNTQLALEWYRKAASPTNDAGVVRGQGS 168
Query: 98 ---ACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAK 154
A LG MY G GV ++ + R+ + LG YF G GV Q+Y +
Sbjct: 169 ASSAQFKLGVMYAHGQGVPQDYQQTAILMRKAAENMYYPAQLYLGVAYFYGEGVPQDYRQ 228
Query: 155 ALFLSKYACSLNYGISCNFV-GYMYRNA---KGVQKDLKKALANFKRGCHLKDGASCVSL 210
A++ LN GI ++ G++ NA K D + +++ +
Sbjct: 229 AVYW------LNEGIPGSYTPGHIPLNALYDKAHPADRVHSQTWYRKTAQRVMAKVQYNF 282
Query: 211 GYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKG 270
G Y G + ++ AL Y++ + VM+ G+GV +D +A+++Y+K
Sbjct: 283 GVWYYNGYHLLKDHNLALEWYRRAAAQGLAEAQDAIGVMFMQGEGVSQDYQQALAWYRKA 342
Query: 271 CTLG 274
G
Sbjct: 343 ARQG 346
Score = 59.3 bits (142), Expect = 5e-08
Identities = 42/150 (28%), Positives = 73/150 (48%), Gaps = 1/150 (0%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
D++ A+ +Y+R+ + ++G M+ G+GV Q+ +A+ +YR+ A L
Sbjct: 295 DHNLALEWYRRAAAQGLAEAQDAIGVMFMQGEGVSQDYQQALAWYRKAARQGLPAAQTHL 354
Query: 103 GSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYA 162
G M G GV ++ +AI +YR+ + LG Y G GV +N AL A
Sbjct: 355 GIMSAFGRGVAQSDRQAIAWYRKAAKQDFAKAQYQLGVAYSTGRGVPENSRNALKWYLKA 414
Query: 163 CSLNYGISCNFVGYMYRNAK-GVQKDLKKA 191
+ + + +G +Y + + GV KD K+A
Sbjct: 415 AEQGFTPAQSALGEIYAHGRQGVPKDNKQA 444
Score = 57.4 bits (137), Expect = 2e-07
Identities = 59/259 (22%), Positives = 96/259 (36%), Gaps = 49/259 (18%)
Query: 65 SLGSMYEDGDGVDQNI------------------------------------TKAVFYYR 88
SLGS Y +G V + KA+ +YR
Sbjct: 56 SLGSWYAEGRYVKPDYKLAIKWLEKAGKQGSDFSYFILGYHYNYGENFPLSRQKALEWYR 115
Query: 89 RGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCH-------LKGGVSCGS---- 137
+ L + LG Y GDG +N A+ +YR+ ++G S S
Sbjct: 116 KAAELGDSSTQEILGDAYMYGDGFPQNTQLALEWYRKAASPTNDAGVVRGQGSASSAQFK 175
Query: 138 LGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKR 197
LG MY +G GV Q+Y + L + A Y + ++G Y +GV +D ++A+
Sbjct: 176 LGVMYAHGQGVPQDYQQTAILMRKAAENMYYPAQLYLGVAYFYGEGVPQDYRQAVYWLNE 235
Query: 198 GCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVP 257
G + L +Y+ + Q Y+K +N V YY G +
Sbjct: 236 GIPGSYTPGHIPLNALYDKAHPADRVHSQ--TWYRKTAQRVMAKVQYNFGVWYYNGYHLL 293
Query: 258 KDLDKAISYYKKGCTLGFS 276
KD + A+ +Y++ G +
Sbjct: 294 KDHNLALEWYRRAAAQGLA 312
Score = 50.8 bits (120), Expect = 2e-05
Identities = 42/144 (29%), Positives = 61/144 (42%), Gaps = 11/144 (7%)
Query: 137 SLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFK 196
SLG Y G VK +Y A+ + A S +GY Y + +KAL ++
Sbjct: 56 SLGSWYAEGRYVKPDYKLAIKWLEKAGKQGSDFSYFILGYHYNYGENFPLSRQKALEWYR 115
Query: 197 RGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCY------LKRGSGCHNVA--- 247
+ L D ++ LG Y G QN + AL Y+K + RG G + A
Sbjct: 116 KAAELGDSSTQEILGDAYMYGDGFPQNTQLALEWYRKAASPTNDAGVVRGQGSASSAQFK 175
Query: 248 --VMYYTGKGVPKDLDKAISYYKK 269
VMY G+GVP+D + +K
Sbjct: 176 LGVMYAHGQGVPQDYQQTAILMRK 199
Score = 48.5 bits (114), Expect = 9e-05
Identities = 33/123 (26%), Positives = 56/123 (44%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
DY +A+A+Y+++ + T LG M G GV Q+ +A+ +YR+ A L
Sbjct: 331 DYQQALAWYRKAARQGLPAAQTHLGIMSAFGRGVAQSDRQAIAWYRKAAKQDFAKAQYQL 390
Query: 103 GSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYA 162
G Y G GV +N A+ +Y + + +LG +Y +G K ++ Y
Sbjct: 391 GVAYSTGRGVPENSRNALKWYLKAAEQGFTPAQSALGEIYAHGRQGVPKDNKQAYIWYYM 450
Query: 163 CSL 165
S+
Sbjct: 451 ASM 453
>ref|NP_246550.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK03695.1| (AE006198) unknown [Pasteurella multocida]
Length = 172
Score = 79.0 bits (193), Expect = 6e-14
Identities = 44/172 (25%), Positives = 85/172 (48%), Gaps = 1/172 (0%)
Query: 2 IKSWTKKWFLILFLMASCSSYLVATTGEKYFKMATQAFKRGDYHKAVAFYKRSCNLRVGV 61
++ W+K L + L+ S + + F+ +A+KRGD+ A +
Sbjct: 1 MQRWSKT-LLSIMLLVSTMNVFAQREEDPVFEQGVEAYKRGDHATAFKLWLSRAEQGEMS 59
Query: 62 GCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIY 121
++G MY+DGDGV+Q+ +A+ +Y++ + A LG MY +GDG+ ++ +A
Sbjct: 60 AQFNVGRMYDDGDGVEQDKQQALKWYQKSAEQNHPDAQYHLGLMYSEGDGIAQDFKQAYK 119
Query: 122 YYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNF 173
+Y + + +LG +Y NG G+++++ +A K AC C++
Sbjct: 120 WYSQSAVQGDARALYNLGTLYANGEGIERDWDRAKMYFKQACKAGLPEGCDW 171
Score = 61.2 bits (147), Expect = 1e-08
Identities = 30/106 (28%), Positives = 52/106 (48%)
Query: 174 VGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKK 233
VG MY + GV++D ++AL +++ + LG MY G + Q+ +QA Y +
Sbjct: 64 VGRMYDDGDGVEQDKQQALKWYQKSAEQNHPDAQYHLGLMYSEGDGIAQDFKQAYKWYSQ 123
Query: 234 GCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGSC 279
+N+ +Y G+G+ +D D+A Y+K+ C G C
Sbjct: 124 SAVQGDARALYNLGTLYANGEGIERDWDRAKMYFKQACKAGLPEGC 169
Score = 48.9 bits (115), Expect = 7e-05
Identities = 27/107 (25%), Positives = 54/107 (50%)
Query: 137 SLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFK 196
++G MY +G GV+Q+ +AL + + N+ + +G MY G+ +D K+A +
Sbjct: 63 NVGRMYDDGDGVEQDKQQALKWYQKSAEQNHPDAQYHLGLMYSEGDGIAQDFKQAYKWYS 122
Query: 197 RGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGC 243
+ D + +LG +Y G ++++ ++A +K+ C GC
Sbjct: 123 QSAVQGDARALYNLGTLYANGEGIERDWDRAKMYFKQACKAGLPEGC 169
>gb|AAD05210.1| (AF063095) SELlL [Mus musculus]
gb|AAH26816.1| (BC026816) Sel1 (suppressor of lin-12) 1 homolog (C. elegans) [Mus
musculus]
Length = 740
Score = 77.8 bits (190), Expect = 1e-13
Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 13/238 (5%)
Query: 52 KRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDG-D 110
K +VG+G L G GV+QN +A Y+ N N A A LG MY +G D
Sbjct: 316 KGDVQAQVGLGQLHL----HGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSD 371
Query: 111 GVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGIS 170
V ++ A++Y+++ + V LG Y G GV+ NY AL + A +
Sbjct: 372 IVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDG 431
Query: 171 CNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNL 230
+G MY N GV++D K+AL F + +L M+ G V ++ A+ L
Sbjct: 432 QLQLGSMYYNGIGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVEL 491
Query: 231 YKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYY----KKGCTLGFSGSCKVLEE 284
+K C +RG + Y + K +D + A+ Y ++G + S + +L++
Sbjct: 492 FKNVC--ERGRWSERLMTAYNSYK--DEDYNAAVVQYLLLAEQGYEVAQSNAAFILDQ 545
Score = 67.8 bits (164), Expect = 1e-10
Identities = 53/235 (22%), Positives = 102/235 (42%), Gaps = 1/235 (0%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDG-DGVDQNITKAVFYYRRGCNLRNHLACAS 101
++ +A ++ + N LG MY +G D V Q+ A+ Y+++ ++ N + +
Sbjct: 339 NHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSG 398
Query: 102 LGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKY 161
LG Y G GVQ N A+ Y+++ LG MY+NG GVK++Y +AL
Sbjct: 399 LGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNL 458
Query: 162 ACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVK 221
A + ++ + M+ + GV + A+ FK C + + Y D
Sbjct: 459 ASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDEDYN 518
Query: 222 QNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFS 276
Q L L ++G + + + + T G + +A+ ++ + + G++
Sbjct: 519 AAVVQYLLLAEQGYEVAQSNAAFILDQREATIVGENETYPRALLHWNRAASQGYT 573
>ref|XP_127076.1| (XM_127076) similar to Sel-1 homolog precursor (Suppressor of
lin-12-like protein) (Sel-1L) [Mus musculus]
sp|Q9Z2G6|SE1L_MOUSE Sel-1 homolog precursor (Suppressor of lin-12-like protein)
(Sel-1L)
dbj|BAB23750.1| (AK005023) Sel1 (suppressor of lin-12) 1 homolog (C. elegans)~data
source:MGD, source key:MGI:1329016,
evidence:ISS~putative [Mus musculus]
Length = 790
Score = 77.8 bits (190), Expect = 1e-13
Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 13/238 (5%)
Query: 52 KRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDG-D 110
K +VG+G L G GV+QN +A Y+ N N A A LG MY +G D
Sbjct: 366 KGDVQAQVGLGQLHL----HGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSD 421
Query: 111 GVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGIS 170
V ++ A++Y+++ + V LG Y G GV+ NY AL + A +
Sbjct: 422 IVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDG 481
Query: 171 CNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNL 230
+G MY N GV++D K+AL F + +L M+ G V ++ A+ L
Sbjct: 482 QLQLGSMYYNGIGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVEL 541
Query: 231 YKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYY----KKGCTLGFSGSCKVLEE 284
+K C +RG + Y + K +D + A+ Y ++G + S + +L++
Sbjct: 542 FKNVC--ERGRWSERLMTAYNSYK--DEDYNAAVVQYLLLAEQGYEVAQSNAAFILDQ 595
Score = 67.8 bits (164), Expect = 1e-10
Identities = 53/235 (22%), Positives = 102/235 (42%), Gaps = 1/235 (0%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDG-DGVDQNITKAVFYYRRGCNLRNHLACAS 101
++ +A ++ + N LG MY +G D V Q+ A+ Y+++ ++ N + +
Sbjct: 389 NHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSG 448
Query: 102 LGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKY 161
LG Y G GVQ N A+ Y+++ LG MY+NG GVK++Y +AL
Sbjct: 449 LGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNL 508
Query: 162 ACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVK 221
A + ++ + M+ + GV + A+ FK C + + Y D
Sbjct: 509 ASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDEDYN 568
Query: 222 QNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFS 276
Q L L ++G + + + + T G + +A+ ++ + + G++
Sbjct: 569 AAVVQYLLLAEQGYEVAQSNAAFILDQREATIVGENETYPRALLHWNRAASQGYT 623
>ref|NP_661851.1| (NC_002932) conserved hypothetical protein [Chlorobium tepidum TLS]
gb|AAM72193.1| (AE012860) conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 248
Score = 77.4 bits (189), Expect = 2e-13
Identities = 49/195 (25%), Positives = 95/195 (48%), Gaps = 3/195 (1%)
Query: 106 YEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSL 165
Y G V ++ +A+ + R + ++GFMY G GV Q+YA+A+ + A +
Sbjct: 57 YYYGRDVDRDYAEALKWLRLSAAKGNDAAEYAIGFMYQKGLGVPQDYAEAMKWYRLAAAK 116
Query: 166 NYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGE 225
+ + N +GY+Y + GV+ D +A+ ++ + A+ ++G +YE G V+Q+
Sbjct: 117 DNDNAQNQIGYLYHHGWGVETDYAEAMKWYRISAAKGNFAAEDNIGVLYEHGQGVEQDYA 176
Query: 226 QALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGSCKVLEEV 285
+A+ Y+ G N+ Y G GV DL+KA+ +Y+ G+ + +++
Sbjct: 177 EAMRWYRISAAKGNGEAELNIGNFYQHGLGVELDLNKAVKWYRSAAA---KGNEEAAQKL 233
Query: 286 IGKKSDDLQDDAQND 300
KS + D ++
Sbjct: 234 SAMKSGSVLPDVHHE 248
Score = 67.4 bits (163), Expect = 2e-10
Identities = 42/150 (28%), Positives = 78/150 (52%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
DY +A+ + + S ++G MY+ G GV Q+ +A+ +YR N A +
Sbjct: 66 DYAEALKWLRLSAAKGNDAAEYAIGFMYQKGLGVPQDYAEAMKWYRLAAAKDNDNAQNQI 125
Query: 103 GSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYA 162
G +Y G GV+ + +A+ +YR + ++G +Y +G GV+Q+YA+A+ + +
Sbjct: 126 GYLYHHGWGVETDYAEAMKWYRISAAKGNFAAEDNIGVLYEHGQGVEQDYAEAMRWYRIS 185
Query: 163 CSLNYGISCNFVGYMYRNAKGVQKDLKKAL 192
+ G + +G Y++ GV+ DL KA+
Sbjct: 186 AAKGNGEAELNIGNFYQHGLGVELDLNKAV 215
Score = 67.0 bits (162), Expect = 2e-10
Identities = 38/163 (23%), Positives = 87/163 (53%)
Query: 70 YEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHL 129
Y G VD++ +A+ + R N A ++G MY+ G GV ++ +A+ +YR
Sbjct: 57 YYYGRDVDRDYAEALKWLRLSAAKGNDAAEYAIGFMYQKGLGVPQDYAEAMKWYRLAAAK 116
Query: 130 KGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLK 189
+ +G++Y +G GV+ +YA+A+ + + + + + +G +Y + +GV++D
Sbjct: 117 DNDNAQNQIGYLYHHGWGVETDYAEAMKWYRISAAKGNFAAEDNIGVLYEHGQGVEQDYA 176
Query: 190 KALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYK 232
+A+ ++ +G + +++G Y+ G+ V+ + +A+ Y+
Sbjct: 177 EAMRWYRISAAKGNGEAELNIGNFYQHGLGVELDLNKAVKWYR 219
Score = 50.1 bits (118), Expect = 3e-05
Identities = 27/82 (32%), Positives = 47/82 (56%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
DY +A+ +Y+ S ++G +YE G GV+Q+ +A+ +YR N A ++
Sbjct: 138 DYAEAMKWYRISAAKGNFAAEDNIGVLYEHGQGVEQDYAEAMRWYRISAAKGNGEAELNI 197
Query: 103 GSMYEDGDGVQKNLPKAIYYYR 124
G+ Y+ G GV+ +L KA+ +YR
Sbjct: 198 GNFYQHGLGVELDLNKAVKWYR 219
Score = 42.4 bits (98), Expect = 0.007
Identities = 22/101 (21%), Positives = 47/101 (45%)
Query: 174 VGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKK 233
+ Y + V +D +AL + + A+ ++G+MY+ G+ V Q+ +A+ Y+
Sbjct: 53 IAMKYYYGRDVDRDYAEALKWLRLSAAKGNDAAEYAIGFMYQKGLGVPQDYAEAMKWYRL 112
Query: 234 GCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLG 274
+ + + +Y+ G GV D +A+ +Y+ G
Sbjct: 113 AAAKDNDNAQNQIGYLYHHGWGVETDYAEAMKWYRISAAKG 153
>ref|NP_005056.3| (NM_005065) sel-1 suppressor of lin-12-like (C. elegans);
Suppressor of lin 12 (sel-1), C. elegans, homolog of;
sel-1 (suppressor of lin-12, C.elegans)-like [Homo
sapiens]
ref|XP_007325.4| (XM_007325) sel-1 suppressor of lin-12-like (C. elegans) [Homo
sapiens]
sp|Q9UBV2|SE1L_HUMAN Sel-1 homolog precursor (Suppressor of lin-12-like protein)
(Sel-1L)
dbj|BAA87904.1| (AB020335) Pancreas-specific gene [Homo sapiens]
dbj|BAA89204.1| (AB024763) TSA305 [Homo sapiens]
Length = 794
Score = 77.0 bits (188), Expect = 2e-13
Identities = 63/213 (29%), Positives = 93/213 (43%), Gaps = 17/213 (7%)
Query: 52 KRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDG-D 110
K +VG+G L G GV+QN +A Y+ N N A A LG MY +G D
Sbjct: 370 KGDVQAQVGLGQLHL----HGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSD 425
Query: 111 GVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGIS 170
V ++ A++Y+++ + V LG Y G GV+ NY AL + A +
Sbjct: 426 IVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDG 485
Query: 171 CNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNL 230
+G MY N GV++D K+AL F + +L M+ G V ++ A+ L
Sbjct: 486 QLQLGSMYYNGIGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVEL 545
Query: 231 YKKGCYLKRGS------------GCHNVAVMYY 251
+K C R S G +N AV+ Y
Sbjct: 546 FKNVCERGRWSERLMTAYNSYKDGDYNAAVIQY 578
Score = 67.0 bits (162), Expect = 2e-10
Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 1/158 (0%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDG-DGVDQNITKAVFYYRRGCNLRNHLACAS 101
++ +A ++ + N LG MY +G D V Q+ A+ Y+++ ++ N + +
Sbjct: 393 NHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSG 452
Query: 102 LGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKY 161
LG Y G GVQ N A+ Y+++ LG MY+NG GVK++Y +AL
Sbjct: 453 LGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNL 512
Query: 162 ACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGC 199
A + ++ + M+ + GV + A+ FK C
Sbjct: 513 ASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVC 550
Score = 65.5 bits (158), Expect = 7e-10
Identities = 58/226 (25%), Positives = 95/226 (41%), Gaps = 12/226 (5%)
Query: 62 GCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIY 121
G T+LG +Y G GV+ + KA+ YY G N +A LG Y G GV ++ A+
Sbjct: 257 GQTALGFLYASGLGVNSSQAKALVYYTFGALGGNLIAHMVLGYRYWAGIGVLQSCESALT 316
Query: 122 YYRRGC-HLKGGVSCGSLGFMY-------FNGTGVKQNYAKALFLSKYACSLNYGISCNF 173
+YR H+ +S + G+ + + Y G
Sbjct: 317 HYRLVANHVASDISLTGGSVVQRIRLPDEVENPGMNSGMLEEDLIQYYQFLAEKGDVQAQ 376
Query: 174 VGY---MYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMD-VKQNGEQALN 229
VG +GV+++ ++A F + + + LG MY G D V Q+ E AL+
Sbjct: 377 VGLGQLHLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALH 436
Query: 230 LYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGF 275
+KK + G + + Y G+GV + D A+ Y++K G+
Sbjct: 437 YFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGW 482
Score = 60.8 bits (146), Expect = 2e-08
Identities = 48/179 (26%), Positives = 79/179 (43%), Gaps = 2/179 (1%)
Query: 98 ACASLGSMY-EDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTG-VKQNYAKA 155
A LG ++ G GV++N +A Y+ + + LG MY G+ V Q+ A
Sbjct: 375 AQVGLGQLHLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETA 434
Query: 156 LFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYE 215
L K A + + + +G Y +GVQ + AL F++ + LG MY
Sbjct: 435 LHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYY 494
Query: 216 VGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLG 274
G+ VK++ +QAL + +N+A M+ +G GV + A+ +K C G
Sbjct: 495 NGIGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERG 553
>gb|AAF29413.1|AF052059_1 (AF052059) SEL1L [Homo sapiens]
gb|AAL40905.1| (AF198647) sel-1 [Homo sapiens]
Length = 794
Score = 77.0 bits (188), Expect = 2e-13
Identities = 63/213 (29%), Positives = 93/213 (43%), Gaps = 17/213 (7%)
Query: 52 KRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDG-D 110
K +VG+G L G GV+QN +A Y+ N N A A LG MY +G D
Sbjct: 370 KGDVQAQVGLGQLHL----HGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSD 425
Query: 111 GVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGIS 170
V ++ A++Y+++ + V LG Y G GV+ NY AL + A +
Sbjct: 426 IVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDG 485
Query: 171 CNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNL 230
+G MY N GV++D K+AL F + +L M+ G V ++ A+ L
Sbjct: 486 QLQLGSMYYNGIGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVEL 545
Query: 231 YKKGCYLKRGS------------GCHNVAVMYY 251
+K C R S G +N AV+ Y
Sbjct: 546 FKNVCERGRWSERLMTAYNSYKDGDYNAAVIQY 578
Score = 67.0 bits (162), Expect = 2e-10
Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 1/158 (0%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDG-DGVDQNITKAVFYYRRGCNLRNHLACAS 101
++ +A ++ + N LG MY +G D V Q+ A+ Y+++ ++ N + +
Sbjct: 393 NHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSG 452
Query: 102 LGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKY 161
LG Y G GVQ N A+ Y+++ LG MY+NG GVK++Y +AL
Sbjct: 453 LGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNL 512
Query: 162 ACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGC 199
A + ++ + M+ + GV + A+ FK C
Sbjct: 513 ASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVC 550
Score = 65.5 bits (158), Expect = 7e-10
Identities = 58/226 (25%), Positives = 95/226 (41%), Gaps = 12/226 (5%)
Query: 62 GCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIY 121
G T+LG +Y G GV+ + KA+ YY G N +A LG Y G GV ++ A+
Sbjct: 257 GQTALGFLYASGLGVNSSQAKALVYYTFGALGGNLIAHMVLGYRYWAGIGVLQSCESALT 316
Query: 122 YYRRGC-HLKGGVSCGSLGFMY-------FNGTGVKQNYAKALFLSKYACSLNYGISCNF 173
+YR H+ +S + G+ + + Y G
Sbjct: 317 HYRLVANHVASDISLTGGSVVQRIRLPDEVENPGMNSGMLEEDLIQYYQFLAEKGDVQAQ 376
Query: 174 VGY---MYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMD-VKQNGEQALN 229
VG +GV+++ ++A F + + + LG MY G D V Q+ E AL+
Sbjct: 377 VGLGQLHLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALH 436
Query: 230 LYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGF 275
+KK + G + + Y G+GV + D A+ Y++K G+
Sbjct: 437 YFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGW 482
Score = 60.8 bits (146), Expect = 2e-08
Identities = 48/179 (26%), Positives = 79/179 (43%), Gaps = 2/179 (1%)
Query: 98 ACASLGSMY-EDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTG-VKQNYAKA 155
A LG ++ G GV++N +A Y+ + + LG MY G+ V Q+ A
Sbjct: 375 AQVGLGQLHLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETA 434
Query: 156 LFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYE 215
L K A + + + +G Y +GVQ + AL F++ + LG MY
Sbjct: 435 LHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYY 494
Query: 216 VGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLG 274
G+ VK++ +QAL + +N+A M+ +G GV + A+ +K C G
Sbjct: 495 NGIGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERG 553
>dbj|BAB12403.1| (AB048195) SEL1L [Mesocricetus auratus]
Length = 794
Score = 76.6 bits (187), Expect = 3e-13
Identities = 62/213 (29%), Positives = 93/213 (43%), Gaps = 17/213 (7%)
Query: 52 KRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDG-D 110
K +VG+G L G GV+QN +A Y+ N N A A LG MY +G D
Sbjct: 370 KGDVQAQVGLGQLHL----HGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSD 425
Query: 111 GVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGIS 170
V ++ A++Y+++ + V LG Y G G++ NY AL + A +
Sbjct: 426 IVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGIQVNYDLALKYFQKAAEQGWVDG 485
Query: 171 CNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNL 230
+G MY N GV++D K+AL F + +L M+ G V ++ A+ L
Sbjct: 486 QLQLGSMYYNGIGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVEL 545
Query: 231 YKKGCYLKRGS------------GCHNVAVMYY 251
+K C R S G +N AV+ Y
Sbjct: 546 FKNVCERGRWSERLMTAYNSYKDGDYNAAVVQY 578
Score = 67.0 bits (162), Expect = 2e-10
Identities = 52/235 (22%), Positives = 102/235 (43%), Gaps = 1/235 (0%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDG-DGVDQNITKAVFYYRRGCNLRNHLACAS 101
++ +A ++ + N LG MY +G D V Q+ A+ Y+++ ++ N + +
Sbjct: 393 NHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSG 452
Query: 102 LGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKY 161
LG Y G G+Q N A+ Y+++ LG MY+NG GVK++Y +AL
Sbjct: 453 LGMAYLYGRGIQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNL 512
Query: 162 ACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVK 221
A + ++ + M+ + GV + A+ FK C + + Y D
Sbjct: 513 ASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDGDYN 572
Query: 222 QNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFS 276
Q L L ++G + + + + T G + +A+ ++ + + G++
Sbjct: 573 AAVVQYLLLAEQGYEVAQSNAAFILDQREATIVGENETYPRALLHWNRAASQGYT 627
>gb|AAF01236.1|AF185288_1 (AF185288) immunoreactive protein [Coxiella burnetii]
Length = 469
Score = 75.5 bits (184), Expect = 7e-13
Identities = 63/233 (27%), Positives = 99/233 (42%), Gaps = 3/233 (1%)
Query: 42 GDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACAS 101
G KAVA Y+ N + LG M E G ++ KA +Y++ N +A
Sbjct: 211 GSEKKAVAIYQELANKQDPAAELKLGFMNEHGLLFPKDYHKAEEWYQKSAEQGNPIAQYL 270
Query: 102 LGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKY 161
LG+MY G GV +++ KAI + ++ + LGF+Y K NY +A
Sbjct: 271 LGNMYYLGRGVDRDVNKAIDWLKKSAAQNYVPAKVGLGFIYEMS---KHNYPEAKKWYTL 327
Query: 162 ACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVK 221
A + + +G MY KGV+ D +KA +K + V + MY G +
Sbjct: 328 ASKFHNPQALYNLGLMYEYGKGVKSDPQKAFRLYKDAAQNGLDLAAVQVAGMYLKGTGIG 387
Query: 222 QNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLG 274
+ AL +Y + + + +M +G DL+KA YY+K G
Sbjct: 388 FDPNTALKMYSQAAQKNNSFATYQLGLMSESGVAQKIDLNKARLYYEKAAKEG 440
Score = 56.6 bits (135), Expect = 3e-07
Identities = 48/206 (23%), Positives = 80/206 (38%), Gaps = 33/206 (16%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGC----------- 91
DYHKA +Y++S + LG+MY G GVD+++ KA+ + ++
Sbjct: 248 DYHKAEEWYQKSAEQGNPIAQYLLGNMYYLGRGVDRDVNKAIDWLKKSAAQNYVPAKVGL 307
Query: 92 ----------------------NLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHL 129
N A +LG MYE G GV+ + KA Y+
Sbjct: 308 GFIYEMSKHNYPEAKKWYTLASKFHNPQALYNLGLMYEYGKGVKSDPQKAFRLYKDAAQN 367
Query: 130 KGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLK 189
++ + MY GTG+ + AL + A N + +G M + + DL
Sbjct: 368 GLDLAAVQVAGMYLKGTGIGFDPNTALKMYSQAAQKNNSFATYQLGLMSESGVAQKIDLN 427
Query: 190 KALANFKRGCHLKDGASCVSLGYMYE 215
KA +++ + ++L YE
Sbjct: 428 KARLYYEKAAKEGSVEAQLALARFYE 453
Score = 53.1 bits (126), Expect = 4e-06
Identities = 65/257 (25%), Positives = 107/257 (41%), Gaps = 35/257 (13%)
Query: 26 TTGEKYFKMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVF 85
T EK F++A +A++ D A+ L +Y+ G GV++N K+
Sbjct: 72 TLAEKTFEIAQKAYQTNDPEAAML----------------LAILYDRGFGVNRNSRKSAE 115
Query: 86 YYRRGCNLRNHLACASLGSMYEDGDGVQKNLPK---AIYYYRRGCHLKGGVSCGSLGFMY 142
+ N +A LG+ Y KN K AI + + G + +L +
Sbjct: 116 ILEKLSKQNNAIAQFMLGNYY------LKNKRKENIAISLLEKSANQGNGYAKYNLAIL- 168
Query: 143 FNGTGVKQN-YAKA--LFLSKYACSLN-YGISCNFVGYMYRNAKGVQKDLKKALANFKRG 198
KQN Y K FLS + N Y + Y V KKA+A ++
Sbjct: 169 -----AKQNKYTKPGENFLSLLIRAANHYDKIKEILADYYLLDTPVPGSEKKAVAIYQEL 223
Query: 199 CHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPK 258
+ +D A+ + LG+M E G+ ++ +A Y+K + + MYY G+GV +
Sbjct: 224 ANKQDPAAELKLGFMNEHGLLFPKDYHKAEEWYQKSAEQGNPIAQYLLGNMYYLGRGVDR 283
Query: 259 DLDKAISYYKKGCTLGF 275
D++KAI + KK +
Sbjct: 284 DVNKAIDWLKKSAAQNY 300
>ref|NP_455743.1| (NC_003198) putative secreted protein [Salmonella enterica subsp.
enterica serovar Typhi]
emb|CAD08375.1| (AL627269) putative secreted protein [Salmonella enterica subsp.
enterica serovar Typhi]
Length = 509
Score = 74.7 bits (182), Expect = 1e-12
Identities = 59/254 (23%), Positives = 104/254 (40%), Gaps = 34/254 (13%)
Query: 66 LGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRR 125
LG MY G GV Q+ + R+ + A LG Y G+GV ++ +A+Y+
Sbjct: 176 LGVMYAHGQGVPQDYQQTAILMRKAAENMYYPAQLYLGVAYFYGEGVPQDYRQAVYWLNE 235
Query: 126 GC---HLKGGVSCGSL-------------------------------GFMYFNGTGVKQN 151
G + G + +L G Y+NG + ++
Sbjct: 236 GIPGSYTPGHIPLNALYDKAHPADQVHSQTWYRKTAQRVMAKVQFNFGVWYYNGYHLLKD 295
Query: 152 YAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLG 211
+ AL + A + + + +G M+ + V +D ++ALA +++ A+ LG
Sbjct: 296 HNLALEWYRRAAAQGLAEAQDAIGVMFMQGEAVSQDYQQALAWYRKAARQGLPAAQTHLG 355
Query: 212 YMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGC 271
M G V Q+ QA+ Y+K + + V Y G+GVP++ A+ +Y K
Sbjct: 356 IMSAFGRGVAQSDRQAIAWYRKAAKQDFAKAQYQLGVAYSMGRGVPENSRNALKWYLKAA 415
Query: 272 TLGFSGSCKVLEEV 285
GF+ + L E+
Sbjct: 416 EQGFTPAQLALGEI 429
Score = 63.5 bits (153), Expect = 3e-09
Identities = 59/244 (24%), Positives = 100/244 (40%), Gaps = 21/244 (8%)
Query: 46 KAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHL-------- 97
KA+ +Y+++ L LG Y GDG QN A+ +YR+ + N
Sbjct: 109 KALEWYRKAAELGDSSTQEILGDAYMYGDGFPQNTQLALEWYRKAASPTNDAGVVRGQGS 168
Query: 98 ---ACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAK 154
A LG MY G GV ++ + R+ + LG YF G GV Q+Y +
Sbjct: 169 ASSAQFKLGVMYAHGQGVPQDYQQTAILMRKAAENMYYPAQLYLGVAYFYGEGVPQDYRQ 228
Query: 155 ALFLSKYACSLNYGISCNFV-GYMYRNA---KGVQKDLKKALANFKRGCHLKDGASCVSL 210
A++ LN GI ++ G++ NA K D + +++ +
Sbjct: 229 AVYW------LNEGIPGSYTPGHIPLNALYDKAHPADQVHSQTWYRKTAQRVMAKVQFNF 282
Query: 211 GYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKG 270
G Y G + ++ AL Y++ + VM+ G+ V +D +A+++Y+K
Sbjct: 283 GVWYYNGYHLLKDHNLALEWYRRAAAQGLAEAQDAIGVMFMQGEAVSQDYQQALAWYRKA 342
Query: 271 CTLG 274
G
Sbjct: 343 ARQG 346
Score = 57.8 bits (138), Expect = 2e-07
Identities = 60/259 (23%), Positives = 95/259 (36%), Gaps = 49/259 (18%)
Query: 65 SLGSMYEDGDGVDQNI------------------------------------TKAVFYYR 88
SLGS Y +G V + KA+ +YR
Sbjct: 56 SLGSWYAEGRYVKPDYKLAIKWLEKAGKQGSDFSYFILGYHYNYGENFPLSRQKALEWYR 115
Query: 89 RGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCH-------LKGGVSCGS---- 137
+ L + LG Y GDG +N A+ +YR+ ++G S S
Sbjct: 116 KAAELGDSSTQEILGDAYMYGDGFPQNTQLALEWYRKAASPTNDAGVVRGQGSASSAQFK 175
Query: 138 LGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKR 197
LG MY +G GV Q+Y + L + A Y + ++G Y +GV +D ++A+
Sbjct: 176 LGVMYAHGQGVPQDYQQTAILMRKAAENMYYPAQLYLGVAYFYGEGVPQDYRQAVYWLNE 235
Query: 198 GCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVP 257
G + L +Y+ Q Q Y+K N V YY G +
Sbjct: 236 GIPGSYTPGHIPLNALYDKAHPADQVHSQ--TWYRKTAQRVMAKVQFNFGVWYYNGYHLL 293
Query: 258 KDLDKAISYYKKGCTLGFS 276
KD + A+ +Y++ G +
Sbjct: 294 KDHNLALEWYRRAAAQGLA 312
Score = 50.8 bits (120), Expect = 2e-05
Identities = 42/144 (29%), Positives = 61/144 (42%), Gaps = 11/144 (7%)
Query: 137 SLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFK 196
SLG Y G VK +Y A+ + A S +GY Y + +KAL ++
Sbjct: 56 SLGSWYAEGRYVKPDYKLAIKWLEKAGKQGSDFSYFILGYHYNYGENFPLSRQKALEWYR 115
Query: 197 RGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCY------LKRGSGCHNVA--- 247
+ L D ++ LG Y G QN + AL Y+K + RG G + A
Sbjct: 116 KAAELGDSSTQEILGDAYMYGDGFPQNTQLALEWYRKAASPTNDAGVVRGQGSASSAQFK 175
Query: 248 --VMYYTGKGVPKDLDKAISYYKK 269
VMY G+GVP+D + +K
Sbjct: 176 LGVMYAHGQGVPQDYQQTAILMRK 199
Score = 43.9 bits (102), Expect = 0.002
Identities = 38/168 (22%), Positives = 77/168 (45%), Gaps = 1/168 (0%)
Query: 65 SLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYR 124
+ G Y +G + ++ A+ +YRR A ++G M+ G+ V ++ +A+ +YR
Sbjct: 281 NFGVWYYNGYHLLKDHNLALEWYRRAAAQGLAEAQDAIGVMFMQGEAVSQDYQQALAWYR 340
Query: 125 RGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGV 184
+ + LG M G GV Q+ +A+ + A ++ + +G Y +GV
Sbjct: 341 KAARQGLPAAQTHLGIMSAFGRGVAQSDRQAIAWYRKAAKQDFAKAQYQLGVAYSMGRGV 400
Query: 185 QKDLKKALANFKRGCHLKDGASCVSLGYMYEVG-MDVKQNGEQALNLY 231
++ + AL + + + ++LG +Y G V ++ +QA Y
Sbjct: 401 PENSRNALKWYLKAAEQGFTPAQLALGEIYAHGRQGVPKDNKQAYIWY 448
>gb|EAA06387.1| (AAAB01008846) agCP13101 [Anopheles gambiae str. PEST]
Length = 849
Score = 73.2 bits (178), Expect = 3e-12
Identities = 60/222 (27%), Positives = 92/222 (41%), Gaps = 12/222 (5%)
Query: 66 LGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRR 125
LG MY G G + + KA+ YY N A +LG Y G GV + A+ YYR+
Sbjct: 265 LGFMYSAGIGFNVSQAKALLYYTLAAAGENSWAQMALGYRYWAGVGVPNSCETALDYYRK 324
Query: 126 GCH-------LKGGVSCGSLGFM-YFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGY- 176
GG + + + + +G + Y + G VG
Sbjct: 325 VATKVASQVTFSGGAAVHRIRLLDEVDNSGPSSGILDNDLIDYYQLLADKGDVQAQVGLG 384
Query: 177 --MYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMD-VKQNGEQALNLYKK 233
Y+ +G+ D ++AL F + + + + LG +Y G D +K + E A +KK
Sbjct: 385 QLHYQGGRGIPLDHQRALQYFSQAANAGNAVAMAFLGKIYLEGSDNIKADNETAFKYFKK 444
Query: 234 GCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGF 275
L G + +MY GKGV KD KA+ Y+ K G+
Sbjct: 445 AADLGNPVGQSGLGIMYLHGKGVRKDTGKALKYFAKAADQGW 486
Score = 64.3 bits (155), Expect = 2e-09
Identities = 52/240 (21%), Positives = 107/240 (43%), Gaps = 6/240 (2%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDG-DGVDQNITKAVFYYRRGCNLRNHLACAS 101
D+ +A+ ++ ++ N V LG +Y +G D + + A Y+++ +L N + +
Sbjct: 397 DHQRALQYFSQAANAGNAVAMAFLGKIYLEGSDNIKADNETAFKYFKKAADLGNPVGQSG 456
Query: 102 LGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKY 161
LG MY G GV+K+ KA+ Y+ + LG MY++G GV++++ A+
Sbjct: 457 LGIMYLHGKGVRKDTGKALKYFAKAADQGWVDGQLQLGNMYYSGIGVQRDFKLAIKYFSL 516
Query: 162 ACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVK 221
A + ++ +G M+ G+ + A+ FK A + GY +
Sbjct: 517 ASQSGHVLAFYNLGQMHAIGLGMIRSCPTAVELFKNVAERGKWADRLMSGYQDYRSYRFE 576
Query: 222 QNGEQALNLYKKGCYLKRGSG---CHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGS 278
++ Q L + G + + + V + +G ++L +A+ Y+ + G+S +
Sbjct: 577 ESFMQYALLSEMGYEVAQSNAGFLLDREEVNLFKDRG--EELVRALQYWGRAAAQGYSAA 634
Score = 54.7 bits (130), Expect = 1e-06
Identities = 60/265 (22%), Positives = 106/265 (39%), Gaps = 38/265 (14%)
Query: 41 RGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACA 100
+ D A ++K++ +L VG + LG MY G GV ++ KA+ Y+ + +
Sbjct: 432 KADNETAFKYFKKAADLGNPVGQSGLGIMYLHGKGVRKDTGKALKYFAKAADQGWVDGQL 491
Query: 101 SLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKAL---- 156
LG+MY G GVQ++ AI Y+ ++ +LG M+ G G+ ++ A+
Sbjct: 492 QLGNMYYSGIGVQRDFKLAIKYFSLASQSGHVLAFYNLGQMHAIGLGMIRSCPTAVELFK 551
Query: 157 -----------FLSKYACSLNYGISCNFVGYMYRNAKGVQ-------------------- 185
+S Y +Y +F+ Y + G +
Sbjct: 552 NVAERGKWADRLMSGYQDYRSYRFEESFMQYALLSEMGYEVAQSNAGFLLDREEVNLFKD 611
Query: 186 --KDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGS-G 242
++L +AL + R A+ V LG + GM + E A + Y+ + +
Sbjct: 612 RGEELVRALQYWGRAAAQGYSAAQVKLGDYHYYGMGTLIDYEMAASHYRMASEQQNNAQA 671
Query: 243 CHNVAVMYYTGKGVPKDLDKAISYY 267
N+ M+ G G+ KD+ A Y
Sbjct: 672 MFNLGYMHEQGLGMKKDIHLAKRCY 696
Score = 53.5 bits (127), Expect = 3e-06
Identities = 57/234 (24%), Positives = 94/234 (39%), Gaps = 12/234 (5%)
Query: 46 KAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSM 105
KA+ +Y + +LG Y G GV + A+ YYR+ S G+
Sbjct: 281 KALLYYTLAAAGENSWAQMALGYRYWAGVGVPNSCETALDYYRKVATKVASQVTFSGGAA 340
Query: 106 YE--------DGDGVQKN-LPKAIYYYRRGCHLKGGVSCG-SLGFMYF-NGTGVKQNYAK 154
D G L + Y + KG V LG +++ G G+ ++ +
Sbjct: 341 VHRIRLLDEVDNSGPSSGILDNDLIDYYQLLADKGDVQAQVGLGQLHYQGGRGIPLDHQR 400
Query: 155 ALFLSKYACSLNYGISCNFVGYMY-RNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYM 213
AL A + ++ F+G +Y + ++ D + A FK+ L + LG M
Sbjct: 401 ALQYFSQAANAGNAVAMAFLGKIYLEGSDNIKADNETAFKYFKKAADLGNPVGQSGLGIM 460
Query: 214 YEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYY 267
Y G V+++ +AL + K G + MYY+G GV +D AI Y+
Sbjct: 461 YLHGKGVRKDTGKALKYFAKAADQGWVDGQLQLGNMYYSGIGVQRDFKLAIKYF 514
>gb|AAD41587.1|AF057704_3 (AF057704) enhanced entry protein EnhC [Legionella pneumophila]
Length = 1201
Score = 73.2 bits (178), Expect = 3e-12
Identities = 53/211 (25%), Positives = 94/211 (44%), Gaps = 4/211 (1%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
DY+ A +Y+++ + +LG +YE VD N +A+ Y + L +L
Sbjct: 883 DYNLAKHWYQKAAK-HLSKADVALGFIYET---VDDNYAQALKAYENAAAKGDMLGAYNL 938
Query: 103 GSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYA 162
MYE G GV N KA+ ++ + L MYF G G +N +AL K A
Sbjct: 939 ALMYEYGKGVPVNYSKALSLFKEASEKGAPEAMSQLAGMYFYGLGQPRNEQQALVWYKKA 998
Query: 163 CSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQ 222
SL G + +G + GV+ D AL ++ + + ++L MY G+ V++
Sbjct: 999 ASLGNGNALYALGLLSETGVGVKLDFPDALRYYQDASDKGNEKAMLALARMYHYGLGVEK 1058
Query: 223 NGEQALNLYKKGCYLKRGSGCHNVAVMYYTG 253
+ +++ ++Y+K + + + Y G
Sbjct: 1059 DHKRSASIYQKLAQKQNAYAQYQLGTYYIEG 1089
Score = 72.8 bits (177), Expect = 5e-12
Identities = 59/206 (28%), Positives = 95/206 (45%), Gaps = 8/206 (3%)
Query: 66 LGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACA--SLGSMYEDGDGVQKNLPKAIYYY 123
LG Y+ G+ + + A +Y++ HL+ A +LG +YE V N +A+ Y
Sbjct: 870 LGQFYQLGETGEPDYNLAKHWYQKAAK---HLSKADVALGFIYET---VDDNYAQALKAY 923
Query: 124 RRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKG 183
+ +L MY G GV NY+KAL L K A + + + MY G
Sbjct: 924 ENAAAKGDMLGAYNLALMYEYGKGVPVNYSKALSLFKEASEKGAPEAMSQLAGMYFYGLG 983
Query: 184 VQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGC 243
++ ++AL +K+ L +G + +LG + E G+ VK + AL Y+
Sbjct: 984 QPRNEQQALVWYKKAASLGNGNALYALGLLSETGVGVKLDFPDALRYYQDASDKGNEKAM 1043
Query: 244 HNVAVMYYTGKGVPKDLDKAISYYKK 269
+A MY+ G GV KD ++ S Y+K
Sbjct: 1044 LALARMYHYGLGVEKDHKRSASIYQK 1069
Score = 72.0 bits (175), Expect = 8e-12
Identities = 61/211 (28%), Positives = 93/211 (43%), Gaps = 8/211 (3%)
Query: 66 LGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRR 125
L M + G G ++ A +Y N A LG Y+ G+ + + A ++Y++
Sbjct: 834 LAYMLQKGLGAAPDLAGAQHWYTASAEQGNPEAQYLLGQFYQLGETGEPDYNLAKHWYQK 893
Query: 126 GC-HL-KGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKG 183
HL K V+ LGF+Y V NYA+AL + A + + + MY KG
Sbjct: 894 AAKHLSKADVA---LGFIYET---VDDNYAQALKAYENAAAKGDMLGAYNLALMYEYGKG 947
Query: 184 VQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGC 243
V + KAL+ FK + L MY G+ +N +QAL YKK L G+
Sbjct: 948 VPVNYSKALSLFKEASEKGAPEAMSQLAGMYFYGLGQPRNEQQALVWYKKAASLGNGNAL 1007
Query: 244 HNVAVMYYTGKGVPKDLDKAISYYKKGCTLG 274
+ + ++ TG GV D A+ YY+ G
Sbjct: 1008 YALGLLSETGVGVKLDFPDALRYYQDASDKG 1038
Score = 48.1 bits (113), Expect = 1e-04
Identities = 29/101 (28%), Positives = 50/101 (48%)
Query: 46 KAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSM 105
+A+ +YK++ +L G +LG + E G GV + A+ YY+ + N A +L M
Sbjct: 990 QALVWYKKAASLGNGNALYALGLLSETGVGVKLDFPDALRYYQDASDKGNEKAMLALARM 1049
Query: 106 YEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGT 146
Y G GV+K+ ++ Y++ + + LG Y GT
Sbjct: 1050 YHYGLGVEKDHKRSASIYQKLAQKQNAYAQYQLGTYYIEGT 1090
>ref|NP_564049.1| (NM_101684) expressed protein [Arabidopsis thaliana]
gb|AAF78381.1|AC069551_14 (AC069551) T10O22.22 [Arabidopsis thaliana]
Length = 678
Score = 71.6 bits (174), Expect = 1e-11
Identities = 50/176 (28%), Positives = 87/176 (49%), Gaps = 2/176 (1%)
Query: 95 NHLACASLGSMYEDG-DGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYA 153
N A +G Y G G++++ KA++++ + S LG +Y G GV++NY
Sbjct: 241 NANAMYKIGLFYYFGLRGLRRDHTKALHWFLKAVDKGEPRSMELLGEIYARGAGVERNYT 300
Query: 154 KALFLSKYACSLNYGISCNFVGYMYRNAKGV-QKDLKKALANFKRGCHLKDGASCVSLGY 212
KAL A + N +GY+Y GV +K+ KA F++ +D + +LG
Sbjct: 301 KALEWLTLAAKEGLYSAFNGIGYLYVKGYGVDKKNYTKAREYFEKAVDNEDPSGHYNLGV 360
Query: 213 MYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYK 268
+Y G+ V ++ QA + + + +A M++TG G+ K+L+ A S+YK
Sbjct: 361 LYLKGIGVNRDVRQATKYFFVAANAGQPKAFYQLAKMFHTGVGLKKNLEMATSFYK 416
Score = 59.3 bits (142), Expect = 5e-08
Identities = 50/202 (24%), Positives = 89/202 (43%), Gaps = 5/202 (2%)
Query: 75 GVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVS 134
G+ ++ TKA+ ++ + + + LG +Y G GV++N KA+ + +
Sbjct: 258 GLRRDHTKALHWFLKAVDKGEPRSMELLGEIYARGAGVERNYTKALEWLTLAAKEGLYSA 317
Query: 135 CGSLGFMYFNGTGV-KQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALA 193
+G++Y G GV K+NY KA + A +G +Y GV +D+++A
Sbjct: 318 FNGIGYLYVKGYGVDKKNYTKAREYFEKAVDNEDPSGHYNLGVLYLKGIGVNRDVRQATK 377
Query: 194 NFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTG 253
F + + L M+ G+ +K+N E A + YK S A+ Y
Sbjct: 378 YFFVAANAGQPKAFYQLAKMFHTGVGLKKNLEMATSFYKLVAERGPWSSLSRWALEAYL- 436
Query: 254 KGVPKDLDKAISYYKKGCTLGF 275
KG D+ KA+ Y + +G+
Sbjct: 437 KG---DVGKALILYSRMAEMGY 455
Score = 51.6 bits (122), Expect = 1e-05
Identities = 39/157 (24%), Positives = 73/157 (45%), Gaps = 1/157 (0%)
Query: 41 RGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACA 100
R D+ KA+ ++ ++ + LG +Y G GV++N TKA+ + + A
Sbjct: 260 RRDHTKALHWFLKAVDKGEPRSMELLGEIYARGAGVERNYTKALEWLTLAAKEGLYSAFN 319
Query: 101 SLGSMYEDGDGV-QKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLS 159
+G +Y G GV +KN KA Y+ + + +LG +Y G GV ++ +A
Sbjct: 320 GIGYLYVKGYGVDKKNYTKAREYFEKAVDNEDPSGHYNLGVLYLKGIGVNRDVRQATKYF 379
Query: 160 KYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFK 196
A + + + M+ G++K+L+ A + +K
Sbjct: 380 FVAANAGQPKAFYQLAKMFHTGVGLKKNLEMATSFYK 416
Score = 50.8 bits (120), Expect = 2e-05
Identities = 63/261 (24%), Positives = 108/261 (41%), Gaps = 28/261 (10%)
Query: 25 ATTGEKYFKMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAV 84
A G Y + + +Y KA +++++ + G +LG +Y G GV++++ +A
Sbjct: 317 AFNGIGYLYVKGYGVDKKNYTKAREYFEKAVDNEDPSGHYNLGVLYLKGIGVNRDVRQAT 376
Query: 85 FYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYR----RG-----------CHL 129
Y+ N A L M+ G G++KNL A +Y+ RG +L
Sbjct: 377 KYFFVAANAGQPKAFYQLAKMFHTGVGLKKNLEMATSFYKLVAERGPWSSLSRWALEAYL 436
Query: 130 KGGVSCGSLGF--MYFNGTGVKQNYAKALFLSKYA-CSLNYGISCNFVGYMYRNAKGVQK 186
KG V + + M G V Q+ A A L KY S+ G+S F R+
Sbjct: 437 KGDVGKALILYSRMAEMGYEVAQSNA-AWILDKYGERSMCMGVS-GFCTDKERH------ 488
Query: 187 DLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNV 246
++A + + R + + + +G Y G +++ +A Y N+
Sbjct: 489 --ERAHSLWWRASEQGNEHAALLIGDAYYYGRGTERDFVRAAEAYMHAKSQSNAQAMFNL 546
Query: 247 AVMYYTGKGVPKDLDKAISYY 267
M+ G+G+P DL A YY
Sbjct: 547 GYMHEHGQGLPFDLHLAKRYY 567
>gb|AAK64159.1| (AY039982) unknown protein [Arabidopsis thaliana]
Length = 678
Score = 71.2 bits (173), Expect = 1e-11
Identities = 48/173 (27%), Positives = 87/173 (49%), Gaps = 8/173 (4%)
Query: 104 SMYEDG-------DGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKAL 156
+MY++G G++++ KA++++ + S LG +Y G GV++NY KAL
Sbjct: 244 AMYKNGLFYYFGLRGLRRDHTKALHWFLKAVDKGEPRSMELLGEIYARGAGVERNYTKAL 303
Query: 157 FLSKYACSLNYGISCNFVGYMYRNAKGV-QKDLKKALANFKRGCHLKDGASCVSLGYMYE 215
A + N +GY+Y GV +K+ KA F++ +D + +LG +Y
Sbjct: 304 EWLTLAAKEGLYSAFNGIGYLYVKGYGVDKKNYTKAREYFEKAVDNEDPSGHYNLGVLYL 363
Query: 216 VGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYK 268
G+ V ++ QA + + + +A M++TG G+ K+L+ A S+YK
Sbjct: 364 KGIGVNRDVRQATKYFFVAANAGQPKAFYQLAKMFHTGVGLKKNLEMATSFYK 416
Score = 59.7 bits (143), Expect = 4e-08
Identities = 53/216 (24%), Positives = 95/216 (43%), Gaps = 12/216 (5%)
Query: 68 SMYEDG-------DGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAI 120
+MY++G G+ ++ TKA+ ++ + + + LG +Y G GV++N KA+
Sbjct: 244 AMYKNGLFYYFGLRGLRRDHTKALHWFLKAVDKGEPRSMELLGEIYARGAGVERNYTKAL 303
Query: 121 YYYRRGCHLKGGVSCGSLGFMYFNGTGV-KQNYAKALFLSKYACSLNYGISCNFVGYMYR 179
+ + +G++Y G GV K+NY KA + A +G +Y
Sbjct: 304 EWLTLAAKEGLYSAFNGIGYLYVKGYGVDKKNYTKAREYFEKAVDNEDPSGHYNLGVLYL 363
Query: 180 NAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKR 239
GV +D+++A F + + L M+ G+ +K+N E A + YK
Sbjct: 364 KGIGVNRDVRQATKYFFVAANAGQPKAFYQLAKMFHTGVGLKKNLEMATSFYKLVAERGP 423
Query: 240 GSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGF 275
S A+ Y KG D+ KA+ Y + +G+
Sbjct: 424 WSSLSRWALEAYL-KG---DVGKALILYSRMAEMGY 455
Score = 51.6 bits (122), Expect = 1e-05
Identities = 39/157 (24%), Positives = 73/157 (45%), Gaps = 1/157 (0%)
Query: 41 RGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACA 100
R D+ KA+ ++ ++ + LG +Y G GV++N TKA+ + + A
Sbjct: 260 RRDHTKALHWFLKAVDKGEPRSMELLGEIYARGAGVERNYTKALEWLTLAAKEGLYSAFN 319
Query: 101 SLGSMYEDGDGV-QKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLS 159
+G +Y G GV +KN KA Y+ + + +LG +Y G GV ++ +A
Sbjct: 320 GIGYLYVKGYGVDKKNYTKAREYFEKAVDNEDPSGHYNLGVLYLKGIGVNRDVRQATKYF 379
Query: 160 KYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFK 196
A + + + M+ G++K+L+ A + +K
Sbjct: 380 FVAANAGQPKAFYQLAKMFHTGVGLKKNLEMATSFYK 416
Score = 50.8 bits (120), Expect = 2e-05
Identities = 63/261 (24%), Positives = 108/261 (41%), Gaps = 28/261 (10%)
Query: 25 ATTGEKYFKMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAV 84
A G Y + + +Y KA +++++ + G +LG +Y G GV++++ +A
Sbjct: 317 AFNGIGYLYVKGYGVDKKNYTKAREYFEKAVDNEDPSGHYNLGVLYLKGIGVNRDVRQAT 376
Query: 85 FYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYR----RG-----------CHL 129
Y+ N A L M+ G G++KNL A +Y+ RG +L
Sbjct: 377 KYFFVAANAGQPKAFYQLAKMFHTGVGLKKNLEMATSFYKLVAERGPWSSLSRWALEAYL 436
Query: 130 KGGVSCGSLGF--MYFNGTGVKQNYAKALFLSKYA-CSLNYGISCNFVGYMYRNAKGVQK 186
KG V + + M G V Q+ A A L KY S+ G+S F R+
Sbjct: 437 KGDVGKALILYSRMAEMGYEVAQSNA-AWILDKYGERSMCMGVS-GFCTDKERH------ 488
Query: 187 DLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNV 246
++A + + R + + + +G Y G +++ +A Y N+
Sbjct: 489 --ERAHSLWWRASEQGNEHAALLIGDAYYYGRGTERDFVRAAEAYMHAKSQSNAQAMFNL 546
Query: 247 AVMYYTGKGVPKDLDKAISYY 267
M+ G+G+P DL A YY
Sbjct: 547 GYMHEHGQGLPFDLHLAKRYY 567
>ref|XP_046437.2| (XM_046437) similar to dJ842G6.2 (novel protein imilar to SEL1L
(sel-1 (suppressor of lin-12, C.elegans)-like)) [Homo
sapiens]
Length = 387
Score = 69.3 bits (168), Expect = 5e-11
Identities = 51/177 (28%), Positives = 82/177 (45%), Gaps = 4/177 (2%)
Query: 65 SLGSMYEDG-DGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGD-GVQKNLPKAIYY 122
SLG ++ G G+DQ+ KA+ Y+ + + A A +G MY +G+ V +N A Y
Sbjct: 190 SLGQLHLIGRKGLDQDYYKALHYFLKAAKAGSANAMAFIGKMYLEGNAAVPQNNATAFKY 249
Query: 123 YRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAK 182
+ + LG +YF+G GV NYA+AL + A + + +G+MY +
Sbjct: 250 FSMAASKGNAIGLHGLGLLYFHGKGVPLNYAEALKYFQKAAEKGWPDAQFQLGFMYYSGS 309
Query: 183 GVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKR 239
G+ KD K A F + L MY G V ++ A+ K+ +LK+
Sbjct: 310 GIWKDYKLAFKYFYLASQSGQPLAIYYLAKMYATGTGVVRSCRTAVE--KRLTFLKK 364
Score = 65.5 bits (158), Expect = 7e-10
Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 4/180 (2%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDG-VDQNITKAVFYYRRGCNLRNHLACAS 101
DY+KA+ ++ ++ +G MY +G+ V QN A Y+ + N +
Sbjct: 205 DYYKALHYFLKAAKAGSANAMAFIGKMYLEGNAAVPQNNATAFKYFSMAASKGNAIGLHG 264
Query: 102 LGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKY 161
LG +Y G GV N +A+ Y+++ + LGFMY++G+G+ ++Y A
Sbjct: 265 LGLLYFHGKGVPLNYAEALKYFQKAAEKGWPDAQFQLGFMYYSGSGIWKDYKLAFKYFYL 324
Query: 162 ACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVK 221
A ++ ++ MY GV + + A+ KR LK C+ + Y + + K
Sbjct: 325 ASQSGQPLAIYYLAKMYATGTGVVRSCRTAVE--KRLTFLKK-RRCIQWRFSYGIELPFK 381
Score = 53.9 bits (128), Expect = 2e-06
Identities = 54/226 (23%), Positives = 90/226 (38%), Gaps = 18/226 (7%)
Query: 65 SLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYR 124
+LG + G G++ + KA+ YY G N ++ LG Y G V +N A+ YY+
Sbjct: 72 ALGFLSSYGIGMEYDQAKALIYYTFGSAGGNMMSQMILGYRYLSGINVLQNCEVALSYYK 131
Query: 125 RGCHLKGGVSCGSLGF------MYFNGTGVKQN--------YAKALFLSKYACSLNYGIS 170
+ S G + + N Y FL++ + +S
Sbjct: 132 KVADYIADTFEKSEGVPVEKVRLTERPENLSSNSEILDWDIYQYYKFLAERG-DVQIQVS 190
Query: 171 CNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMY-EVGMDVKQNGEQALN 229
+ + R KG+ +D KAL F + + +G MY E V QN A
Sbjct: 191 LGQLHLIGR--KGLDQDYYKALHYFLKAAKAGSANAMAFIGKMYLEGNAAVPQNNATAFK 248
Query: 230 LYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGF 275
+ G H + ++Y+ GKGVP + +A+ Y++K G+
Sbjct: 249 YFSMAASKGNAIGLHGLGLLYFHGKGVPLNYAEALKYFQKAAEKGW 294
>ref|NP_273467.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||F81200 conserved hypothetical protein NMB0419 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF40857.1| (AE002398) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 198
Score = 66.2 bits (160), Expect = 4e-10
Identities = 43/143 (30%), Positives = 74/143 (51%)
Query: 65 SLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYR 124
+LG+MY G GV ++ +AV +YR+ A +LG MY +G GV+++ +A+ +YR
Sbjct: 46 NLGAMYYKGRGVRRDDAEAVRWYRQAAEQGLAQAQYNLGWMYANGRGVRQDDTEAVRWYR 105
Query: 125 RGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGV 184
+ + +LG +Y G GV+Q+ +A+ + A + + N +G MY +GV
Sbjct: 106 QAAAQGVVQAQYNLGVIYAEGRGVRQDDVEAVRWFRQAAAQGVAQAQNNLGVMYAERRGV 165
Query: 185 QKDLKKALANFKRGCHLKDGASC 207
++D A F + C D C
Sbjct: 166 RQDRALAQEWFGKACQNGDQDGC 188
Score = 62.0 bits (149), Expect = 8e-09
Identities = 37/143 (25%), Positives = 72/143 (49%)
Query: 137 SLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFK 196
+LG MY+ G GV+++ A+A+ + A + +G+MY N +GV++D +A+ ++
Sbjct: 46 NLGAMYYKGRGVRRDDAEAVRWYRQAAEQGLAQAQYNLGWMYANGRGVRQDDTEAVRWYR 105
Query: 197 RGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGV 256
+ + +LG +Y G V+Q+ +A+ +++ +N+ VMY +GV
Sbjct: 106 QAAAQGVVQAQYNLGVIYAEGRGVRQDDVEAVRWFRQAAAQGVAQAQNNLGVMYAERRGV 165
Query: 257 PKDLDKAISYYKKGCTLGFSGSC 279
+D A ++ K C G C
Sbjct: 166 RQDRALAQEWFGKACQNGDQDGC 188
Score = 61.6 bits (148), Expect = 1e-08
Identities = 42/151 (27%), Positives = 75/151 (48%)
Query: 95 NHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAK 154
N A +LG+MY G GV+++ +A+ +YR+ + +LG+MY NG GV+Q+ +
Sbjct: 40 NAAAQYNLGAMYYKGRGVRRDDAEAVRWYRQAAEQGLAQAQYNLGWMYANGRGVRQDDTE 99
Query: 155 ALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMY 214
A+ + A + + +G +Y +GV++D +A+ F++ + +LG MY
Sbjct: 100 AVRWYRQAAAQGVVQAQYNLGVIYAEGRGVRQDDVEAVRWFRQAAAQGVAQAQNNLGVMY 159
Query: 215 EVGMDVKQNGEQALNLYKKGCYLKRGSGCHN 245
V+Q+ A + K C GC N
Sbjct: 160 AERRGVRQDRALAQEWFGKACQNGDQDGCDN 190
Score = 55.5 bits (132), Expect = 7e-07
Identities = 36/115 (31%), Positives = 63/115 (54%)
Query: 41 RGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACA 100
R D +AV +Y+++ + +LG MY +G GV Q+ T+AV +YR+ A
Sbjct: 58 RRDDAEAVRWYRQAAEQGLAQAQYNLGWMYANGRGVRQDDTEAVRWYRQAAAQGVVQAQY 117
Query: 101 SLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKA 155
+LG +Y +G GV+++ +A+ ++R+ + +LG MY GV+Q+ A A
Sbjct: 118 NLGVIYAEGRGVRQDDVEAVRWFRQAAAQGVAQAQNNLGVMYAERRGVRQDRALA 172
Score = 49.3 bits (116), Expect = 5e-05
Identities = 29/124 (23%), Positives = 63/124 (50%)
Query: 174 VGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKK 233
+G MY +GV++D +A+ +++ + +LG+MY G V+Q+ +A+ Y++
Sbjct: 47 LGAMYYKGRGVRRDDAEAVRWYRQAAEQGLAQAQYNLGWMYANGRGVRQDDTEAVRWYRQ 106
Query: 234 GCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGSCKVLEEVIGKKSDDL 293
+N+ V+Y G+GV +D +A+ ++++ G + + L + ++
Sbjct: 107 AAAQGVVQAQYNLGVIYAEGRGVRQDDVEAVRWFRQAAAQGVAQAQNNLGVMYAERRGVR 166
Query: 294 QDDA 297
QD A
Sbjct: 167 QDRA 170
>gb|AAC37164.1| (L05770) putative regulatory protein PobS [Acinetobacter sp. ADP1]
Length = 392
Score = 65.9 bits (159), Expect = 6e-10
Identities = 38/130 (29%), Positives = 66/130 (50%)
Query: 102 LGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKY 161
L SMY +G V +N+ A+++Y + +LG +Y NG G+++NY L K
Sbjct: 239 LASMYLNGLDVTQNMSLALFWYEKTASQNDPEGELNLGKLYLNGLGIEKNYELGLTWIKK 298
Query: 162 ACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVK 221
+ NY + + +Y VQKD+++AL +K+ +L+ S LG ++E+G V
Sbjct: 299 SVKQNYPDAYFTLAELYEKGHIVQKDIQQALIFYKKAANLRHATSAYRLGQIFELGQGVT 358
Query: 222 QNGEQALNLY 231
+ + A Y
Sbjct: 359 LDLKLAKRFY 368
Score = 64.7 bits (156), Expect = 1e-09
Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 5/155 (3%)
Query: 138 LGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKR 197
L MY NG V QN + ALF + S N +G +Y N G++K+ + L K+
Sbjct: 239 LASMYLNGLDVTQNMSLALFWYEKTASQNDPEGELNLGKLYLNGLGIEKNYELGLTWIKK 298
Query: 198 GCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVP 257
+ +L +YE G V+++ +QAL YKK L+ + + + ++ G+GV
Sbjct: 299 SVKQNYPDAYFTLAELYEKGHIVQKDIQQALIFYKKAANLRHATSAYRLGQIFELGQGVT 358
Query: 258 KDLDKAISYYKKGCTLGFSGSCK----VLEEVIGK 288
DL A +Y + + FS K +L+++I K
Sbjct: 359 LDLKLAKRFYHQAAS-NFSSEAKNRLDILDQLINK 392
Score = 48.9 bits (115), Expect = 7e-05
Identities = 26/102 (25%), Positives = 55/102 (53%)
Query: 47 AVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMY 106
A+ +Y+++ + G +LG +Y +G G+++N + + ++ A +L +Y
Sbjct: 256 ALFWYEKTASQNDPEGELNLGKLYLNGLGIEKNYELGLTWIKKSVKQNYPDAYFTLAELY 315
Query: 107 EDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGV 148
E G VQK++ +A+ +Y++ +L+ S LG ++ G GV
Sbjct: 316 EKGHIVQKDIQQALIFYKKAANLRHATSAYRLGQIFELGQGV 357
Score = 46.6 bits (109), Expect = 3e-04
Identities = 30/114 (26%), Positives = 53/114 (46%)
Query: 172 NFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLY 231
N + MY N V +++ AL +++ D ++LG +Y G+ +++N E L
Sbjct: 237 NQLASMYLNGLDVTQNMSLALFWYEKTASQNDPEGELNLGKLYLNGLGIEKNYELGLTWI 296
Query: 232 KKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGSCKVLEEV 285
KK +A +Y G V KD+ +A+ +YKK L + S L ++
Sbjct: 297 KKSVKQNYPDAYFTLAELYEKGHIVQKDIQQALIFYKKAANLRHATSAYRLGQI 350
Score = 44.7 bits (104), Expect = 0.001
Identities = 23/83 (27%), Positives = 43/83 (51%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
+Y + + K+S +L +YE G V ++I +A+ +Y++ NLR+ + L
Sbjct: 288 NYELGLTWIKKSVKQNYPDAYFTLAELYEKGHIVQKDIQQALIFYKKAANLRHATSAYRL 347
Query: 103 GSMYEDGDGVQKNLPKAIYYYRR 125
G ++E G GV +L A +Y +
Sbjct: 348 GQIFELGQGVTLDLKLAKRFYHQ 370
>ref|NP_651179.1| (NM_142922) BcDNA:LD23587 gene product [Drosophila melanogaster]
gb|AAD55437.1|AF181652_1 (AF181652) BcDNA.LD23587 [Drosophila melanogaster]
gb|AAF56178.1| (AE003744) BcDNA:LD23587 gene product [Drosophila melanogaster]
Length = 819
Score = 65.1 bits (157), Expect = 9e-10
Identities = 68/292 (23%), Positives = 113/292 (38%), Gaps = 43/292 (14%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDG-DGVDQNITKAVFYYRRGCNLRNHLACAS 101
D+ KA+ ++K + + VG LG +Y +G D + + A Y+ + + + + +
Sbjct: 353 DHQKALEYFKMAADAGSAVGIAFLGKLYLEGSDQIRADNDAAFGYFSKAAEMGDPVGQSG 412
Query: 102 LGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKY 161
LG MY G GV K+ KA+ Y+ + LG MYF G GVK +Y A
Sbjct: 413 LGLMYLKGLGVPKDSIKALSYFTQAADQGWVDGQLQLGNMYFTGNGVKTDYKLAFKYFNL 472
Query: 162 ACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGY--------- 212
A + ++ +G M G+ + A+ FK +S + + Y
Sbjct: 473 ATQSGHVLAYYNLGVMNAYGMGMLRSCPAAVEFFKTVSERGRWSSRLMMAYSDYKNNRID 532
Query: 213 --------MYEVGMDVKQNGEQAL--------------NLYKKGCYLKRGSGCHNVAVM- 249
M E+G +V Q+ L +L + Y KR +G A
Sbjct: 533 EAYMQYSLMAEMGYEVAQSNAAFLLDRKEVHVFNDRHEDLIRAFYYWKRAAGQGYSAAQV 592
Query: 250 -----YYTGKGVPKDLDKAISYYKKGCTLGFSGSCK-----VLEEVIGKKSD 291
YY G G D + A + Y+K ++ + E+ +G K D
Sbjct: 593 KLGDYYYYGWGTSTDFETAAALYRKASEQQYNAQAMFNLGYMHEQGLGMKKD 644
Score = 63.9 bits (154), Expect = 2e-09
Identities = 61/259 (23%), Positives = 107/259 (40%), Gaps = 10/259 (3%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
DY+K +A K +VG+G Y+ G +Q+ KA+ Y++ + + + A L
Sbjct: 322 DYYKLLAD-KGDIQSQVGLGQV----YYQGGKVTEQDHQKALEYFKMAADAGSAVGIAFL 376
Query: 103 GSMYEDG-DGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKY 161
G +Y +G D ++ + A Y+ + + V LG MY G GV ++ KAL
Sbjct: 377 GKLYLEGSDQIRADNDAAFGYFSKAAEMGDPVGQSGLGLMYLKGLGVPKDSIKALSYFTQ 436
Query: 162 ACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVK 221
A + +G MY GV+ D K A F + +LG M GM +
Sbjct: 437 AADQGWVDGQLQLGNMYFTGNGVKTDYKLAFKYFNLATQSGHVLAYYNLGVMNAYGMGML 496
Query: 222 QNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGSCKV 281
++ A+ +K +RG + + Y K +D+A Y +G+ +
Sbjct: 497 RSCPAAVEFFK--TVSERGRWSSRLMMAYSDYKN--NRIDEAYMQYSLMAEMGYEVAQSN 552
Query: 282 LEEVIGKKSDDLQDDAQND 300
++ +K + +D D
Sbjct: 553 AAFLLDRKEVHVFNDRHED 571
Score = 48.1 bits (113), Expect = 1e-04
Identities = 49/231 (21%), Positives = 95/231 (40%), Gaps = 10/231 (4%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
D KA++++ ++ + G LG+MY G+GV + A Y+ + LA +L
Sbjct: 426 DSIKALSYFTQAADQGWVDGQLQLGNMYFTGNGVKTDYKLAFKYFNLATQSGHVLAYYNL 485
Query: 103 GSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYA 162
G M G G+ ++ P A+ +++ S + + + + + Y + +++
Sbjct: 486 GVMNAYGMGMLRSCPAAVEFFKTVSERGRWSSRLMMAYSDYKNNRIDEAYMQYSLMAE-- 543
Query: 163 CSLNYGISCNFVGYMYRNAK-----GVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVG 217
+ Y ++ + ++ + +DL +A +KR A+ V LG Y G
Sbjct: 544 --MGYEVAQSNAAFLLDRKEVHVFNDRHEDLIRAFYYWKRAAGQGYSAAQVKLGDYYYYG 601
Query: 218 MDVKQNGEQALNLYKKGCYLK-RGSGCHNVAVMYYTGKGVPKDLDKAISYY 267
+ E A LY+K + N+ M+ G G+ KD A Y
Sbjct: 602 WGTSTDFETAAALYRKASEQQYNAQAMFNLGYMHEQGLGMKKDWHLAKRLY 652
>ref|NP_496487.1| (NM_064086) ZK20.4.p [Caenorhabditis elegans]
pir||T27773 hypothetical protein ZK20.4 - Caenorhabditis elegans
emb|CAA93779.1| (Z69904) cDNA EST yk428d5.3 comes from this gene~cDNA EST yk428d5.5
comes from this gene~cDNA EST yk537a3.3 comes from this
gene~cDNA EST yk621h11.3 comes from this gene~cDNA EST
yk537a3.5 comes from this gene~cDNA EST yk621h11.5 comes
from this gene [>
Length = 249
Score = 64.3 bits (155), Expect = 2e-09
Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 29/205 (14%)
Query: 87 YRRGC-NLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKG-GVSCGSLG-FMYF 143
YR GC + +C LG E +Q+N A+ +++ C SC G +M
Sbjct: 27 YRFGCYEEKRPESCQLLGEYME---ALQQNFQAAVAIFKKNCDENSYPKSCFKYGMYMLA 83
Query: 144 NGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQK-DLKKALANFKRGCHLK 202
G + +K + K AC N C ++ ++ N + +K D +KA +R C L+
Sbjct: 84 GKVGDDASLSKMIRPMKIACDANIPQGCRYLSLVHWNGEKDRKADSEKAERYMRRACELE 143
Query: 203 DGASCVSLGYMY---------------------EVGMDVKQNGEQALNLYKKGCYLKRGS 241
DG +C L Y E+G + ++ +++L + C +
Sbjct: 144 DGEACWLLSTWYMGNKEKFKTNAAGEAKELDRAELG-SLSRDMDKSLQFAIRACEMDIPQ 202
Query: 242 GCHNVAVMYYTGKGVPKDLDKAISY 266
C NV+ M+ G GVPKDLD+A Y
Sbjct: 203 SCANVSRMFKLGDGVPKDLDQAKKY 227
>gb|AAH15313.1|AAH15313 (BC015313) hypothetical protein FLJ12439 [Homo sapiens]
Length = 231
Score = 62.0 bits (149), Expect = 8e-09
Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 11/143 (7%)
Query: 147 GVKQNYAKALFLSKYACSLN-YGISCNFVGYMYRNAKG-VQKDLKKALANFKRGCHL--- 201
G+++N+ +A + K+ C N + SC +G Y KG + +DLK A F C
Sbjct: 46 GIRKNFDEAAKVLKFNCEENQHSDSCYKLGAYYVTGKGGLTQDLKAAARCFLMACEKPGK 105
Query: 202 KDGASCVSLGYMYEVGMDVKQNGE----QALNLYKKGCYLKRGSGCHNVAVMYYTGK-GV 256
K A+C ++G + G V ++G+ +A + Y + C S C N++ M+ G G
Sbjct: 106 KSIAACHNVGLLAHDGQ-VNEDGQPDLGKARDYYTRACDGGYTSSCFNLSAMFLQGAPGF 164
Query: 257 PKDLDKAISYYKKGCTLGFSGSC 279
PKD+D A Y K C LG +C
Sbjct: 165 PKDMDLACKYSMKACDLGHIWAC 187
Score = 46.2 bits (108), Expect = 5e-04
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDG-DGVDQNITKAVFYYRRGCNLRNHLACAS 101
D KA +Y R+C+ C +L +M+ G G +++ A Y + C+L + ACA+
Sbjct: 130 DLGKARDYYTRACDGGYTSSCFNLSAMFLQGAPGFPKDMDLACKYSMKACDLGHIWACAN 189
Query: 102 LGSMYEDGDGVQKNLPKA 119
MY+ GDGV K+ KA
Sbjct: 190 ASRMYKLGDGVDKDEAKA 207
Score = 44.3 bits (103), Expect = 0.002
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 9/175 (5%)
Query: 74 DGVDQNITKAVFYYRRGCNLRNHL-ACASLGSMYEDGDG-VQKNLPKAIYYYRRGCHLKG 131
+G+ +N +A + C H +C LG+ Y G G + ++L A + C G
Sbjct: 45 EGIRKNFDEAAKVLKFNCEENQHSDSCYKLGAYYVTGKGGLTQDLKAAARCFLMACEKPG 104
Query: 132 GVS---CGSLGFMYFNGT---GVKQNYAKALFLSKYACSLNYGISC-NFVGYMYRNAKGV 184
S C ++G + +G + + KA AC Y SC N + A G
Sbjct: 105 KKSIAACHNVGLLAHDGQVNEDGQPDLGKARDYYTRACDGGYTSSCFNLSAMFLQGAPGF 164
Query: 185 QKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKR 239
KD+ A + C L +C + MY++G V ++ +A L + L R
Sbjct: 165 PKDMDLACKYSMKACDLGHIWACANASRMYKLGDGVDKDEAKAEVLKNRAQQLHR 219
Score = 43.9 bits (102), Expect = 0.002
Identities = 47/163 (28%), Positives = 67/163 (40%), Gaps = 9/163 (5%)
Query: 110 DGVQKNLPKAIYYYRRGCHL-KGGVSCGSLGFMYFNGTG-VKQNYAKALFLSKYACSLNY 167
+G++KN +A + C + SC LG Y G G + Q+ A AC
Sbjct: 45 EGIRKNFDEAAKVLKFNCEENQHSDSCYKLGAYYVTGKGGLTQDLKAAARCFLMACEKPG 104
Query: 168 GIS---CNFVGYMYRNAK---GVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMD-V 220
S C+ VG + + + Q DL KA + R C +SC +L M+ G
Sbjct: 105 KKSIAACHNVGLLAHDGQVNEDGQPDLGKARDYYTRACDGGYTSSCFNLSAMFLQGAPGF 164
Query: 221 KQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKA 263
++ + A K C L C N + MY G GV KD KA
Sbjct: 165 PKDMDLACKYSMKACDLGHIWACANASRMYKLGDGVDKDEAKA 207
Score = 43.9 bits (102), Expect = 0.002
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 63 CTSLGSMYEDG----DGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDG-DGVQKNLP 117
C ++G + DG DG ++ KA YY R C+ +C +L +M+ G G K++
Sbjct: 111 CHNVGLLAHDGQVNEDG-QPDLGKARDYYTRACDGGYTSSCFNLSAMFLQGAPGFPKDMD 169
Query: 118 KAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLN 166
A Y + C L +C + MY G GV ++ AKA L A L+
Sbjct: 170 LACKYSMKACDLGHIWACANASRMYKLGDGVDKDEAKAEVLKNRAQQLH 218
>gb|AAF45339.1| (AE003066) CG13865 gene product [Drosophila melanogaster]
gb|AAM52744.1| (AY122232) RE58665p [Drosophila melanogaster]
Length = 266
Score = 61.6 bits (148), Expect = 1e-08
Identities = 53/200 (26%), Positives = 84/200 (41%), Gaps = 16/200 (8%)
Query: 43 DYHKAVAFYKRSCN-LRVGVGCTSLGS---MYEDGDGVDQNITKAVFYYRRGCNLRNHLA 98
D+ KA YK +C+ C G+ + + G N A YY +GCNL + A
Sbjct: 48 DFEKASKVYKSTCDDYGYAKSCYKYGNYSFLGKGKSGSKGNPQVAYEYYEKGCNLNDSDA 107
Query: 99 CASLGSMYEDGD---GVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKA 155
C G + + N+PK + + + C L +C L M+ +G K +
Sbjct: 108 CLHSGLLLVSKSMPREIDWNVPKGLEFLTKSCDLNNATACFYLSGMHISGVQKKADQ--- 164
Query: 156 LFLSKYACSLNYGISCNFVGY--MYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYM 213
S S G S G + + V KD+KKA + C L++ +C +L M
Sbjct: 165 ---SAVTASSGSGTSSPPAGQPPLKDSDYIVLKDMKKAFQFAHKACELRNMYACANLSQM 221
Query: 214 YEVGMDVKQNGEQALNLYKK 233
Y G +++N ++A YKK
Sbjct: 222 YARGDGIEKNEKEA-EKYKK 240
Score = 56.2 bits (134), Expect = 4e-07
Identities = 54/215 (25%), Positives = 89/215 (41%), Gaps = 18/215 (8%)
Query: 63 CTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHL-ACASLG--SMYEDGDGVQKNLPKA 119
C LG E G+ ++ KA Y+ C+ + +C G S G K P+
Sbjct: 35 CHLLGDYLE---GIKKDFEKASKVYKSTCDDYGYAKSCYKYGNYSFLGKGKSGSKGNPQV 91
Query: 120 IY-YYRRGCHLKGGVSCGSLGFMYFNGTGVKQ---NYAKALFLSKYACSLNYGISCNFVG 175
Y YY +GC+L +C G + + + ++ N K L +C LN +C ++
Sbjct: 92 AYEYYEKGCNLNDSDACLHSGLLLVSKSMPREIDWNVPKGLEFLTKSCDLNNATACFYLS 151
Query: 176 YMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGY--MYEVGMDVKQNGEQALNLYKK 233
M+ GVQK ++ G G S G + + V ++ ++A K
Sbjct: 152 GMH--ISGVQKKADQSAVTASSG----SGTSSPPAGQPPLKDSDYIVLKDMKKAFQFAHK 205
Query: 234 GCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYK 268
C L+ C N++ MY G G+ K+ +A Y K
Sbjct: 206 ACELRNMYACANLSQMYARGDGIEKNEKEAEKYKK 240
Score = 53.1 bits (126), Expect = 4e-06
Identities = 52/213 (24%), Positives = 86/213 (39%), Gaps = 17/213 (7%)
Query: 17 ASCSSYLVATTGEKY----FKMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYED 72
++C Y A + KY F ++ +G+ A +Y++ CNL C G +
Sbjct: 58 STCDDYGYAKSCYKYGNYSFLGKGKSGSKGNPQVAYEYYEKGCNLNDSDACLHSGLLLVS 117
Query: 73 GD---GVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHL 129
+D N+ K + + + C+L N AC L M+ G VQK ++ G
Sbjct: 118 KSMPREIDWNVPKGLEFLTKSCDLNNATACFYLSGMHISG--VQKKADQSAVTASSG--- 172
Query: 130 KGGVSCGSLGFMYFNGTG--VKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKD 187
G S G + V ++ KA + AC L +C + MY G++K+
Sbjct: 173 -SGTSSPPAGQPPLKDSDYIVLKDMKKAFQFAHKACELRNMYACANLSQMYARGDGIEKN 231
Query: 188 LKKALANFKRGCHLKDGASCV--SLGYMYEVGM 218
K+A K ++D +LG+ VGM
Sbjct: 232 EKEAEKYKKLALEMQDEVKKQHDTLGFQQGVGM 264
Score = 44.7 bits (104), Expect = 0.001
Identities = 52/225 (23%), Positives = 87/225 (38%), Gaps = 23/225 (10%)
Query: 76 VDQNITKAVFYYRRGC-NLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGC----HLK 130
V + + K YR GC + + AC LG E G++K+ KA Y+ C + K
Sbjct: 11 VKEYVEKLGVEYRFGCYSEKKPEACHLLGDYLE---GIKKDFEKASKVYKSTCDDYGYAK 67
Query: 131 GGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNA---KGVQKD 187
G+ F+ +G K N A + C+LN +C G + + + + +
Sbjct: 68 SCYKYGNYSFLGKGKSGSKGNPQVAYEYYEKGCNLNDSDACLHSGLLLVSKSMPREIDWN 127
Query: 188 LKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVA 247
+ K L + C L + +C L M+ G+ K + + GSG +
Sbjct: 128 VPKGLEFLTKSCDLNNATACFYLSGMHISGVQKKAD--------QSAVTASSGSGTSSPP 179
Query: 248 VMYYTGKG----VPKDLDKAISYYKKGCTLGFSGSCKVLEEVIGK 288
K V KD+ KA + K C L +C L ++ +
Sbjct: 180 AGQPPLKDSDYIVLKDMKKAFQFAHKACELRNMYACANLSQMYAR 224
>ref|NP_075565.1| (NM_023077) hypothetical protein FLJ12439 [Homo sapiens]
dbj|BAB14063.1| (AK022501) unnamed protein product [Homo sapiens]
Length = 231
Score = 61.6 bits (148), Expect = 1e-08
Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 11/143 (7%)
Query: 147 GVKQNYAKALFLSKYACSLN-YGISCNFVGYMYRNAKG-VQKDLKKALANFKRGCHL--- 201
G+++N+ +A + K+ C N + SC +G Y KG + +DLK A F C
Sbjct: 46 GIRKNFDEAAKVLKFNCEENQHSDSCYKLGAHYVTGKGGLTQDLKAAARCFLMACEKPGK 105
Query: 202 KDGASCVSLGYMYEVGMDVKQNGE----QALNLYKKGCYLKRGSGCHNVAVMYYTGK-GV 256
K A+C ++G + G V ++G+ +A + Y + C S C N++ M+ G G
Sbjct: 106 KSIAACHNVGLLAHDGQ-VNEDGQPDLGKARDYYTRACDGGYTSSCFNLSAMFLQGAPGF 164
Query: 257 PKDLDKAISYYKKGCTLGFSGSC 279
PKD+D A Y K C LG +C
Sbjct: 165 PKDMDLACKYSMKACDLGHIWAC 187
Score = 46.2 bits (108), Expect = 5e-04
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDG-DGVDQNITKAVFYYRRGCNLRNHLACAS 101
D KA +Y R+C+ C +L +M+ G G +++ A Y + C+L + ACA+
Sbjct: 130 DLGKARDYYTRACDGGYTSSCFNLSAMFLQGAPGFPKDMDLACKYSMKACDLGHIWACAN 189
Query: 102 LGSMYEDGDGVQKNLPKA 119
MY+ GDGV K+ KA
Sbjct: 190 ASRMYKLGDGVDKDEAKA 207
Score = 43.9 bits (102), Expect = 0.002
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 63 CTSLGSMYEDG----DGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDG-DGVQKNLP 117
C ++G + DG DG ++ KA YY R C+ +C +L +M+ G G K++
Sbjct: 111 CHNVGLLAHDGQVNEDG-QPDLGKARDYYTRACDGGYTSSCFNLSAMFLQGAPGFPKDMD 169
Query: 118 KAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLN 166
A Y + C L +C + MY G GV ++ AKA L A L+
Sbjct: 170 LACKYSMKACDLGHIWACANASRMYKLGDGVDKDEAKAEVLKNRAQQLH 218
Score = 43.9 bits (102), Expect = 0.002
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 9/175 (5%)
Query: 74 DGVDQNITKAVFYYRRGCNLRNHL-ACASLGSMYEDGDG-VQKNLPKAIYYYRRGCHLKG 131
+G+ +N +A + C H +C LG+ Y G G + ++L A + C G
Sbjct: 45 EGIRKNFDEAAKVLKFNCEENQHSDSCYKLGAHYVTGKGGLTQDLKAAARCFLMACEKPG 104
Query: 132 GVS---CGSLGFMYFNGT---GVKQNYAKALFLSKYACSLNYGISC-NFVGYMYRNAKGV 184
S C ++G + +G + + KA AC Y SC N + A G
Sbjct: 105 KKSIAACHNVGLLAHDGQVNEDGQPDLGKARDYYTRACDGGYTSSCFNLSAMFLQGAPGF 164
Query: 185 QKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKR 239
KD+ A + C L +C + MY++G V ++ +A L + L R
Sbjct: 165 PKDMDLACKYSMKACDLGHIWACANASRMYKLGDGVDKDEAKAEVLKNRAQQLHR 219
Score = 43.5 bits (101), Expect = 0.003
Identities = 47/163 (28%), Positives = 67/163 (40%), Gaps = 9/163 (5%)
Query: 110 DGVQKNLPKAIYYYRRGCHL-KGGVSCGSLGFMYFNGTG-VKQNYAKALFLSKYACSLNY 167
+G++KN +A + C + SC LG Y G G + Q+ A AC
Sbjct: 45 EGIRKNFDEAAKVLKFNCEENQHSDSCYKLGAHYVTGKGGLTQDLKAAARCFLMACEKPG 104
Query: 168 GIS---CNFVGYMYRNAK---GVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMD-V 220
S C+ VG + + + Q DL KA + R C +SC +L M+ G
Sbjct: 105 KKSIAACHNVGLLAHDGQVNEDGQPDLGKARDYYTRACDGGYTSSCFNLSAMFLQGAPGF 164
Query: 221 KQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKA 263
++ + A K C L C N + MY G GV KD KA
Sbjct: 165 PKDMDLACKYSMKACDLGHIWACANASRMYKLGDGVDKDEAKA 207
>ref|NP_405544.1| (NC_003143) putative exported protein [Yersinia pestis]
emb|CAC90802.1| (AJ414150) putative exported protein [Yersinia pestis]
Length = 720
Score = 60.8 bits (146), Expect = 2e-08
Identities = 35/115 (30%), Positives = 60/115 (51%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
DY + + + ++S + + L MY +GDGV ++ TK Y + L A +
Sbjct: 582 DYDRGLKWLEKSADHKNIKALFLLAQMYNEGDGVKEDQTKYFSYLLKAAQLGLSDAQVEI 641
Query: 103 GSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALF 157
G +Y G+GV+KNLP+A ++ + + +LG++Y NG G ++N KA F
Sbjct: 642 GYLYLVGEGVEKNLPEAYQWHIKAAEQGNVHAHYNLGWIYQNGDGTEKNLDKAKF 696
Score = 48.5 bits (114), Expect = 9e-05
Identities = 30/118 (25%), Positives = 57/118 (47%)
Query: 78 QNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGS 137
Q+ + + + + + +N A L MY +GDGV+++ K Y + L +
Sbjct: 581 QDYDRGLKWLEKSADHKNIKALFLLAQMYNEGDGVKEDQTKYFSYLLKAAQLGLSDAQVE 640
Query: 138 LGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANF 195
+G++Y G GV++N +A A + +G++Y+N G +K+L KA +F
Sbjct: 641 IGYLYLVGEGVEKNLPEAYQWHIKAAEQGNVHAHYNLGWIYQNGDGTEKNLDKAKFHF 698
Score = 46.6 bits (109), Expect = 3e-04
Identities = 23/81 (28%), Positives = 46/81 (56%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
D K ++ ++ L + +G +Y G+GV++N+ +A ++ + N A +L
Sbjct: 618 DQTKYFSYLLKAAQLGLSDAQVEIGYLYLVGEGVEKNLPEAYQWHIKAAEQGNVHAHYNL 677
Query: 103 GSMYEDGDGVQKNLPKAIYYY 123
G +Y++GDG +KNL KA +++
Sbjct: 678 GWIYQNGDGTEKNLDKAKFHF 698
Score = 45.8 bits (107), Expect = 6e-04
Identities = 29/113 (25%), Positives = 51/113 (44%)
Query: 177 MYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCY 236
MY GV++D K + + L + V +GY+Y VG V++N +A + K
Sbjct: 608 MYNEGDGVKEDQTKYFSYLLKAAQLGLSDAQVEIGYLYLVGEGVEKNLPEAYQWHIKAAE 667
Query: 237 LKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGSCKVLEEVIGKK 289
+N+ +Y G G K+LDKA ++ G + + L+++ K
Sbjct: 668 QGNVHAHYNLGWIYQNGDGTEKNLDKAKFHFTVAAKSGMREAYEELKKLESNK 720
>ref|XP_131544.1| (XM_131544) RIKEN cDNA 2010305A19 [Mus musculus]
gb|AAH12391.1|AAH12391 (BC012391) Similar to hypothetical protein FLJ12439 [Mus musculus]
Length = 231
Score = 59.7 bits (143), Expect = 4e-08
Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 11/143 (7%)
Query: 147 GVKQNYAKALFLSKYACS-LNYGISCNFVGYMYRNAKG-VQKDLKKALANFKRGCHL--- 201
G+++N+ +A + K+ C +G SC +G Y KG + +DLK A + F C
Sbjct: 46 GIQKNFDEAAKVLKFNCEKYGHGDSCYKLGAYYVTGKGGLTQDLKAASSCFLMACEKPGK 105
Query: 202 KDGASCVSLGYMYEVGMDVKQNGE----QALNLYKKGCYLKRGSGCHNVAVMYYTGK-GV 256
K SC ++G + G V ++G+ +A + Y + C + C N++ M+ G G
Sbjct: 106 KSVESCHNVGLLAHDGQ-VNEDGQPDLGKARDYYSRACDGGYAASCFNLSAMFLQGAPGF 164
Query: 257 PKDLDKAISYYKKGCTLGFSGSC 279
PKD+ A Y K C LG +C
Sbjct: 165 PKDMGLACKYSMKACDLGHVWAC 187
Score = 52.0 bits (123), Expect = 8e-06
Identities = 51/163 (31%), Positives = 67/163 (40%), Gaps = 9/163 (5%)
Query: 110 DGVQKNLPKAIYYYRRGCHLKG-GVSCGSLGFMYFNGTG-VKQNYAKALFLSKYACSL-- 165
+G+QKN +A + C G G SC LG Y G G + Q+ A AC
Sbjct: 45 EGIQKNFDEAAKVLKFNCEKYGHGDSCYKLGAYYVTGKGGLTQDLKAASSCFLMACEKPG 104
Query: 166 -NYGISCNFVGYMYRNAK---GVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMD-V 220
SC+ VG + + + Q DL KA + R C ASC +L M+ G
Sbjct: 105 KKSVESCHNVGLLAHDGQVNEDGQPDLGKARDYYSRACDGGYAASCFNLSAMFLQGAPGF 164
Query: 221 KQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKA 263
++ A K C L C N + MY G GV KD KA
Sbjct: 165 PKDMGLACKYSMKACDLGHVWACANASRMYKLGDGVDKDEAKA 207
Score = 47.8 bits (112), Expect = 2e-04
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDG-DGVDQNITKAVFYYRRGCNLRNHLACAS 101
D KA +Y R+C+ C +L +M+ G G +++ A Y + C+L + ACA+
Sbjct: 130 DLGKARDYYSRACDGGYAASCFNLSAMFLQGAPGFPKDMGLACKYSMKACDLGHVWACAN 189
Query: 102 LGSMYEDGDGVQKNLPKA 119
MY+ GDGV K+ KA
Sbjct: 190 ASRMYKLGDGVDKDEAKA 207
Score = 46.6 bits (109), Expect = 3e-04
Identities = 34/107 (31%), Positives = 50/107 (45%), Gaps = 10/107 (9%)
Query: 182 KGVQKDLKKALANFKRGCH-LKDGASCVSLGYMYEVGMD-VKQNGEQALNLYKKGCYL-- 237
+G+QK+ +A K C G SC LG Y G + Q+ + A + + C
Sbjct: 45 EGIQKNFDEAAKVLKFNCEKYGHGDSCYKLGAYYVTGKGGLTQDLKAASSCFLMACEKPG 104
Query: 238 -KRGSGCHNVAVMYYTGK----GVPKDLDKAISYYKKGCTLGFSGSC 279
K CHNV ++ + G+ G P DL KA YY + C G++ SC
Sbjct: 105 KKSVESCHNVGLLAHDGQVNEDGQP-DLGKARDYYSRACDGGYAASC 150
Score = 44.3 bits (103), Expect = 0.002
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 63 CTSLGSMYEDG----DGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDG-DGVQKNLP 117
C ++G + DG DG ++ KA YY R C+ +C +L +M+ G G K++
Sbjct: 111 CHNVGLLAHDGQVNEDG-QPDLGKARDYYSRACDGGYAASCFNLSAMFLQGAPGFPKDMG 169
Query: 118 KAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLN 166
A Y + C L +C + MY G GV ++ AKA L A L+
Sbjct: 170 LACKYSMKACDLGHVWACANASRMYKLGDGVDKDEAKAEVLKNRARQLH 218
>dbj|BAB25716.1| (AK008518) data source:SPTR, source key:Q9H9Z9,
evidence:ISS~homolog to CDNA FLJ12439 FIS, CLONE
NT2RM1000127~putative [Mus musculus]
Length = 204
Score = 59.7 bits (143), Expect = 4e-08
Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 11/143 (7%)
Query: 147 GVKQNYAKALFLSKYACS-LNYGISCNFVGYMYRNAKG-VQKDLKKALANFKRGCHL--- 201
G+++N+ +A + K+ C +G SC +G Y KG + +DLK A + F C
Sbjct: 19 GIQKNFDEAAKVLKFNCEKYGHGDSCYKLGAYYVTGKGGLTQDLKAASSCFLMACEKPGK 78
Query: 202 KDGASCVSLGYMYEVGMDVKQNGE----QALNLYKKGCYLKRGSGCHNVAVMYYTGK-GV 256
K SC ++G + G V ++G+ +A + Y + C + C N++ M+ G G
Sbjct: 79 KSVESCHNVGLLAHDGQ-VNEDGQPDLGKARDYYSRACDGGYAASCFNLSAMFLQGAPGF 137
Query: 257 PKDLDKAISYYKKGCTLGFSGSC 279
PKD+ A Y K C LG +C
Sbjct: 138 PKDMGLACKYSMKACDLGHVWAC 160
Score = 52.0 bits (123), Expect = 8e-06
Identities = 51/163 (31%), Positives = 67/163 (40%), Gaps = 9/163 (5%)
Query: 110 DGVQKNLPKAIYYYRRGCHLKG-GVSCGSLGFMYFNGTG-VKQNYAKALFLSKYACSL-- 165
+G+QKN +A + C G G SC LG Y G G + Q+ A AC
Sbjct: 18 EGIQKNFDEAAKVLKFNCEKYGHGDSCYKLGAYYVTGKGGLTQDLKAASSCFLMACEKPG 77
Query: 166 -NYGISCNFVGYMYRNAK---GVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMD-V 220
SC+ VG + + + Q DL KA + R C ASC +L M+ G
Sbjct: 78 KKSVESCHNVGLLAHDGQVNEDGQPDLGKARDYYSRACDGGYAASCFNLSAMFLQGAPGF 137
Query: 221 KQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKA 263
++ A K C L C N + MY G GV KD KA
Sbjct: 138 PKDMGLACKYSMKACDLGHVWACANASRMYKLGDGVDKDEAKA 180
Score = 47.8 bits (112), Expect = 2e-04
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDG-DGVDQNITKAVFYYRRGCNLRNHLACAS 101
D KA +Y R+C+ C +L +M+ G G +++ A Y + C+L + ACA+
Sbjct: 103 DLGKARDYYSRACDGGYAASCFNLSAMFLQGAPGFPKDMGLACKYSMKACDLGHVWACAN 162
Query: 102 LGSMYEDGDGVQKNLPKA 119
MY+ GDGV K+ KA
Sbjct: 163 ASRMYKLGDGVDKDEAKA 180
Score = 46.6 bits (109), Expect = 3e-04
Identities = 34/107 (31%), Positives = 50/107 (45%), Gaps = 10/107 (9%)
Query: 182 KGVQKDLKKALANFKRGCH-LKDGASCVSLGYMYEVGMD-VKQNGEQALNLYKKGCYL-- 237
+G+QK+ +A K C G SC LG Y G + Q+ + A + + C
Sbjct: 18 EGIQKNFDEAAKVLKFNCEKYGHGDSCYKLGAYYVTGKGGLTQDLKAASSCFLMACEKPG 77
Query: 238 -KRGSGCHNVAVMYYTGK----GVPKDLDKAISYYKKGCTLGFSGSC 279
K CHNV ++ + G+ G P DL KA YY + C G++ SC
Sbjct: 78 KKSVESCHNVGLLAHDGQVNEDGQP-DLGKARDYYSRACDGGYAASC 123
Score = 44.3 bits (103), Expect = 0.002
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 63 CTSLGSMYEDG----DGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDG-DGVQKNLP 117
C ++G + DG DG ++ KA YY R C+ +C +L +M+ G G K++
Sbjct: 84 CHNVGLLAHDGQVNEDG-QPDLGKARDYYSRACDGGYAASCFNLSAMFLQGAPGFPKDMG 142
Query: 118 KAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLN 166
A Y + C L +C + MY G GV ++ AKA L A L+
Sbjct: 143 LACKYSMKACDLGHVWACANASRMYKLGDGVDKDEAKAEVLKNRARQLH 191
>ref|NP_103302.1| (NC_002678) unknown protein [Mesorhizobium loti]
dbj|BAB49088.1| (AP002998) unknown protein [Mesorhizobium loti]
Length = 716
Score = 59.3 bits (142), Expect = 5e-08
Identities = 45/154 (29%), Positives = 68/154 (43%)
Query: 44 YHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLG 103
Y A FY+ + N + ++G M G G + + +A Y R L N A +G
Sbjct: 447 YSWAEHFYELAGNQQYSAALINMGYMARVGMGREIDYGRAFDPYVRAAALGNLRARTDIG 506
Query: 104 SMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYAC 163
S Y G GV K + + +YR + +LG Y GTGVKQ+Y +A L A
Sbjct: 507 SAYIAGQGVPKLPEEGVLWYRLAASSGWANAITALGDAYRLGTGVKQDYVQAASLYSAAA 566
Query: 164 SLNYGISCNFVGYMYRNAKGVQKDLKKALANFKR 197
+ +G Y +GV+KD+ + L +R
Sbjct: 567 DTGQIDAMANLGQAYLAGEGVKKDVPRGLELLQR 600
Score = 49.3 bits (116), Expect = 5e-05
Identities = 44/177 (24%), Positives = 78/177 (43%), Gaps = 1/177 (0%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
DY +A Y R+ L T +GS Y G GV + + V +YR + A +L
Sbjct: 482 DYGRAFDPYVRAAALGNLRARTDIGSAYIAGQGVPKLPEEGVLWYRLAASSGWANAITAL 541
Query: 103 GSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYA 162
G Y G GV+++ +A Y + +LG Y G GVK++ + L L + A
Sbjct: 542 GDAYRLGTGVKQDYVQAASLYSAAADTGQIDAMANLGQAYLAGEGVKKDVPRGLELLQRA 601
Query: 163 CSLNYGISCNFVGYMY-RNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGM 218
+ + F+ +Y + + + D ++ALA + + + + V L + + G+
Sbjct: 602 NDMGNRYAPYFMAQLYLKGDRKLPADPRRALALLELSANRGNEYAYVRLAWGHRDGV 658
Score = 42.7 bits (99), Expect = 0.005
Identities = 41/193 (21%), Positives = 79/193 (40%), Gaps = 1/193 (0%)
Query: 83 AVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMY 142
A +Y N + A ++G M G G + + +A Y R L + +G Y
Sbjct: 450 AEHFYELAGNQQYSAALINMGYMARVGMGREIDYGRAFDPYVRAAALGNLRARTDIGSAY 509
Query: 143 FNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLK 202
G GV + + + + A S + + +G YR GV++D +A + +
Sbjct: 510 IAGQGVPKLPEEGVLWYRLAASSGWANAITALGDAYRLGTGVKQDYVQAASLYSAAADTG 569
Query: 203 DGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTG-KGVPKDLD 261
+ +LG Y G VK++ + L L ++ + + +A +Y G + +P D
Sbjct: 570 QIDAMANLGQAYLAGEGVKKDVPRGLELLQRANDMGNRYAPYFMAQLYLKGDRKLPADPR 629
Query: 262 KAISYYKKGCTLG 274
+A++ + G
Sbjct: 630 RALALLELSANRG 642
>ref|NP_459434.1| (NC_003197) putative TPR repeat protein [Salmonella typhimurium
LT2]
gb|AAL19393.1| (AE008716) putative TPR repeat protein [Salmonella typhimurium LT2]
Length = 427
Score = 58.9 bits (141), Expect = 7e-08
Identities = 59/270 (21%), Positives = 109/270 (39%), Gaps = 45/270 (16%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRR--------GCNLR 94
D +A+ +Y+++C+L GC + YE G G ++IT+A ++ NL
Sbjct: 2 DIPQAIKYYEQACDLDGDYGCFNAAYFYEYGIGTQKDITQAKTLAKQLREKINLSNINLD 61
Query: 95 NHLACASLGSMYEDGDGVQKNLP--------KAIYYY----------------------- 123
++ +GS+Y + ++L + Y+Y
Sbjct: 62 KKVSERIIGSVYSNKLEAYRDLSFRPHFIQGLSFYFYAPQSDERKLLSRIGFDSSHLARI 121
Query: 124 -----RRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMY 178
R G + + +YFN + A+AL + + S +G++Y
Sbjct: 122 AILWAREGDPEVAYQTAKLVSTLYFNNETKTIDIAEALKWLRISAEKGDADSQTLLGFLY 181
Query: 179 RNAK-GVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYL 237
+A G+Q D +KA ++ +G + +LG MY G+ V + ++AL +KK
Sbjct: 182 EHAGLGLQPDGEKARKWYEMAAQQGNGEALYTLGRMYYSGVLVNVDYDKALYFFKKAYEK 241
Query: 238 KRGSGCHNVAVMYYTGKGVPKDLDKAISYY 267
K +A MY+ G+ V D ++ YY
Sbjct: 242 KLQEAADYLAQMYFNGQSVDVDCQQSWHYY 271
>ref|NP_284256.1| (NC_003116) hypothetical protein [Neisseria meningitidis Z2491]
pir||H81845 hypothetical protein NMA1541 [imported] - Neisseria meningitidis
(group A strain Z2491)
emb|CAB84768.1| (AL162756) hypothetical protein [Neisseria meningitidis Z2491]
Length = 477
Score = 58.5 bits (140), Expect = 9e-08
Identities = 50/232 (21%), Positives = 95/232 (40%), Gaps = 26/232 (11%)
Query: 65 SLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYR 124
+L +Y G ++N A+ + R+ LG +Y G G+ + KA++YYR
Sbjct: 255 ALADIYLQGKHPERNYKLALHHAEAAAAERHPEGLRILGDIYRYGLGMTSDKEKALHYYR 314
Query: 125 RGCHLKGGVSCGSL----------GFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFV 174
+ + L + + +++ A+ L+ + A +L+YG+ C
Sbjct: 315 QAAEAGSLAAYQKLISDSALNHPDQYGGIKDSAIRRQRAERLY--QKAQALHYGLQC--- 369
Query: 175 GYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKG 234
+ AL + L + +LG MY G + + +A ++K
Sbjct: 370 ----------APEYAAALKLYTEAAELGHSKAQTNLGSMYYFGQGMTADYNEARKWFEKA 419
Query: 235 CYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGSCKVLEEVI 286
K +N+A ++Y G GV D +KA Y ++ G+ G VL+E++
Sbjct: 420 AAQKDSMALYNLACIHYNGHGVEPDKEKACRYLQEAINNGY-GQKSVLQELL 470
Score = 45.8 bits (107), Expect = 6e-04
Identities = 53/263 (20%), Positives = 96/263 (36%), Gaps = 46/263 (17%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHL-ACAS 101
D+ A Y+++ + LG Y G G + +AV NHL A A
Sbjct: 166 DFETAHLLYRKAAAQGLAAAHWQLGLQYRFGQGTKVDTAQAV----------NHLRAAAQ 215
Query: 102 LGSMYEDGDGVQKNLP----KAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALF 157
G + + LP +A++++++ + +L +Y G ++NY AL
Sbjct: 216 QGYIPAYTPLAELILPTAPDEAVHWFQQAAQENDPDAHAALADIYLQGKHPERNYKLALH 275
Query: 158 LSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCH----------------- 200
++ A + + +G +YR G+ D +KAL +++
Sbjct: 276 HAEAAAAERHPEGLRILGDIYRYGLGMTSDKEKALHYYRQAAEAGSLAAYQKLISDSALN 335
Query: 201 -------LKDGA-------SCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNV 246
+KD A G+ AL LY + L N+
Sbjct: 336 HPDQYGGIKDSAIRRQRAERLYQKAQALHYGLQCAPEYAAALKLYTEAAELGHSKAQTNL 395
Query: 247 AVMYYTGKGVPKDLDKAISYYKK 269
MYY G+G+ D ++A +++K
Sbjct: 396 GSMYYFGQGMTADYNEARKWFEK 418
>ref|NP_455031.1| (NC_003198) probable secreted protein [Salmonella enterica subsp.
enterica serovar Typhi]
emb|CAD08893.1| (AL627266) probable secreted protein [Salmonella enterica subsp.
enterica serovar Typhi]
Length = 223
Score = 57.4 bits (137), Expect = 2e-07
Identities = 28/60 (46%), Positives = 36/60 (59%)
Query: 210 LGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKK 269
LG+++E G++V N EQAL YK+ C L GC+NV Y G GV KD +A Y KK
Sbjct: 56 LGFIHEYGLNVPMNREQALQYYKQACELGGNYGCYNVKYAYQHGDGVAKDSAQANKYAKK 115
Score = 44.3 bits (103), Expect = 0.002
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 102 LGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKY 161
LG ++E G V N +A+ YY++ C L G C ++ + Y +G GV ++ A+A +KY
Sbjct: 56 LGFIHEYGLNVPMNREQALQYYKQACELGGNYGCYNVKYAYQHGDGVAKDSAQA---NKY 112
Query: 162 ACSLN 166
A +N
Sbjct: 113 AKKMN 117
>ref|NP_459433.1| (NC_003197) putative periplasmic protein [Salmonella typhimurium
LT2]
gb|AAL19392.1| (AE008715) putative periplasmic protein [Salmonella typhimurium
LT2]
Length = 503
Score = 57.4 bits (137), Expect = 2e-07
Identities = 44/117 (37%), Positives = 56/117 (47%), Gaps = 13/117 (11%)
Query: 153 AKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGY 212
A LF+S+ S N G + A QKDL AL KR L + LG+
Sbjct: 12 AGVLFVSQVNASANNGKDD------VKYAALTQKDLD-ALPVEKRASVLDE------LGF 58
Query: 213 MYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKK 269
++E G+ V N E+AL YK+ C L GC+NV Y G GV KD +A Y KK
Sbjct: 59 IHEYGLSVPMNRERALQYYKQACELGGNYGCYNVKYAYQYGDGVAKDSAQANKYAKK 115
Score = 47.8 bits (112), Expect = 2e-04
Identities = 70/307 (22%), Positives = 128/307 (40%), Gaps = 61/307 (19%)
Query: 46 KAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACAS---- 101
+A+ +YK++C L GC ++ Y+ GDGV ++ +A Y ++ NL N L
Sbjct: 72 RALQYYKQACELGGNYGCYNVKYAYQYGDGVAKDSAQANKYAKK-MNLDNLLIEQEYIDK 130
Query: 102 ------LGSMYEDGDGVQK------------NLPK--AIYYYRRGCHLKG---------- 131
+ D D Q+ N P+ A+++ R G + +
Sbjct: 131 FSQEIYMAKALADTDKSQRAAFISILIHALNNRPESDALFFSRIGFNQEKTFRLATLWSQ 190
Query: 132 ------GVSCGSLGFMYFNGTGVKQNY-AKALFLSKYACSLNYGI--SCNFVGYMYRNAK 182
G L F+G + Y A+ L + + G+ + + +G +Y +
Sbjct: 191 DGDPQMDYQMGRLTLNDFSGRYADEPYQARPASLKWFRAAAEKGVVEAQSLLGGIYSGGE 250
Query: 183 G----VQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLK 238
G ++ D+++A + + D + ++LG +Y G + + +AL L+ +
Sbjct: 251 GDEWGIKPDIQEAQKWYGQAAKQGDSDAQIALGKIYYSGATGRTDYAKALALFTQ----V 306
Query: 239 RGSGCHN-----VAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGSCKVLEEV-IGKKSDD 292
G ++ ++ MYY G G D DKA SYYKK + G KV E++ + K + D
Sbjct: 307 ENDGTNSRSTMPLSWMYYNGLGTAPDCDKAWSYYKKASR--YVGK-KVEEKIFLSKCAAD 363
Query: 293 LQDDAQN 299
+Q N
Sbjct: 364 IQSRKNN 370
Score = 43.5 bits (101), Expect = 0.003
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 102 LGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKY 161
LG ++E G V N +A+ YY++ C L G C ++ + Y G GV ++ A+A +KY
Sbjct: 56 LGFIHEYGLSVPMNRERALQYYKQACELGGNYGCYNVKYAYQYGDGVAKDSAQA---NKY 112
Query: 162 ACSLN 166
A +N
Sbjct: 113 AKKMN 117
>ref|NP_506144.1| (NM_073743) Yeast hypothetical gene L8167.5 like [Caenorhabditis
elegans]
pir||S68303 sel-1 protein - Caenorhabditis elegans
pir||T22223 sel-1 protein - Caenorhabditis elegans
gb|AAC47113.1| (U50829) SEL-1 [Caenorhabditis elegans]
emb|CAB01505.1| (Z78063) predicted using Genefinder~Similarity to Yeast predicted
gene L8167.5 (TR:G544502)~cDNA EST yk53e10.3 comes from
this gene~cDNA EST yk53e10.5 comes from this gene~cDNA
EST yk318c4.5 comes from this gene~cDNA EST yk342b8.3
comes from this gene~>
Length = 685
Score = 57.0 bits (136), Expect = 3e-07
Identities = 65/260 (25%), Positives = 98/260 (37%), Gaps = 56/260 (21%)
Query: 65 SLGSMYEDGDGVDQ-NITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYY 123
+LG M+ G GV++ N KA+ YY N LA ++G Y G GV +N A+ YY
Sbjct: 172 ALGFMHGAGIGVEKSNQAKALVYYMFSALGGNPLAQMAMGFRYSHGVGVPQNCETALSYY 231
Query: 124 RRGC----------------------------HL--------------------KGGVSC 135
++ H+ KG S
Sbjct: 232 QKVAKTVVDNVKFTTGQTIQRLRLTDETDPTIHMQPGSAPLESNLLEYYKMLADKGDTSA 291
Query: 136 G-SLGFMYF-NGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKG-VQKDLKKAL 192
LG +Y G G+ QN+ A A + ++G MY + KD +K+
Sbjct: 292 QLGLGQIYLAGGRGLNQNFELAFRYLLAAAESGSADALTYLGKMYLDGTPFTPKDYQKSF 351
Query: 193 ANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYY- 251
+ ++ LG MY G VK+N E+AL L K G +A ++Y
Sbjct: 352 EYLMKSADKSSPSAQAVLGAMYMKGKGVKKNYEKALKLLTLSADKKNADGQMYLAELHYK 411
Query: 252 ---TGKGVPKDLDKAISYYK 268
T KGV +D K++ Y+
Sbjct: 412 GVPTNKGVHRDFKKSVKLYQ 431
Score = 56.2 bits (134), Expect = 4e-07
Identities = 55/204 (26%), Positives = 85/204 (40%), Gaps = 28/204 (13%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
+Y+K +A K + ++G+G L G G++QN A Y + A L
Sbjct: 278 EYYKMLAD-KGDTSAQLGLGQIYLAG----GRGLNQNFELAFRYLLAAAESGSADALTYL 332
Query: 103 GSMYEDGDG-VQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFL--- 158
G MY DG K+ K+ Y + + LG MY G GVK+NY KAL L
Sbjct: 333 GKMYLDGTPFTPKDYQKSFEYLMKSADKSSPSAQAVLGAMYMKGKGVKKNYEKALKLLTL 392
Query: 159 ---------SKYACSLNY-GISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCV 208
Y L+Y G+ N KGV +D KK++ ++ +
Sbjct: 393 SADKKNADGQMYLAELHYKGVPTN---------KGVHRDFKKSVKLYQLASQNGHILAYY 443
Query: 209 SLGYMYEVGMDVKQNGEQALNLYK 232
+L M+ G V ++ A++L+K
Sbjct: 444 NLAQMHAAGTGVPRSCSHAVDLFK 467
>gb|AAC47112.1| (U50828) sel-1 gene product [Caenorhabditis elegans]
Length = 685
Score = 57.0 bits (136), Expect = 3e-07
Identities = 65/260 (25%), Positives = 98/260 (37%), Gaps = 56/260 (21%)
Query: 65 SLGSMYEDGDGVDQ-NITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYY 123
+LG M+ G GV++ N KA+ YY N LA ++G Y G GV +N A+ YY
Sbjct: 172 ALGFMHGAGIGVEKSNQAKALVYYMFSALGGNPLAQMAMGFRYSHGVGVPQNCETALSYY 231
Query: 124 RRGC----------------------------HL--------------------KGGVSC 135
++ H+ KG S
Sbjct: 232 QKVAKTVVDNVKFTTGQTIQRLRLTDETDPTIHMQPGSAPLESNLLEYYKMLADKGDTSA 291
Query: 136 G-SLGFMYF-NGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKG-VQKDLKKAL 192
LG +Y G G+ QN+ A A + ++G MY + KD +K+
Sbjct: 292 QLGLGQIYLAGGRGLNQNFELAFRYLLAAAESGSADALTYLGKMYLDGTPFTPKDYQKSF 351
Query: 193 ANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYY- 251
+ ++ LG MY G VK+N E+AL L K G +A ++Y
Sbjct: 352 EYLMKSADKSSPSAQAVLGAMYMKGKGVKKNYEKALKLLTLSADKKNADGQMYLAELHYK 411
Query: 252 ---TGKGVPKDLDKAISYYK 268
T KGV +D K++ Y+
Sbjct: 412 GVPTNKGVHRDFKKSVKLYQ 431
Score = 56.2 bits (134), Expect = 4e-07
Identities = 55/204 (26%), Positives = 85/204 (40%), Gaps = 28/204 (13%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
+Y+K +A K + ++G+G L G G++QN A Y + A L
Sbjct: 278 EYYKMLAD-KGDTSAQLGLGQIYLAG----GRGLNQNFELAFRYLLAAAESGSADALTYL 332
Query: 103 GSMYEDGDG-VQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFL--- 158
G MY DG K+ K+ Y + + LG MY G GVK+NY KAL L
Sbjct: 333 GKMYLDGTPFTPKDYQKSFEYLMKSADKSSPSAQAVLGAMYMKGKGVKKNYEKALKLLTL 392
Query: 159 ---------SKYACSLNY-GISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCV 208
Y L+Y G+ N KGV +D KK++ ++ +
Sbjct: 393 SADKKNADGQMYLAELHYKGVPTN---------KGVHRDFKKSVKLYQLASQNGHILAYY 443
Query: 209 SLGYMYEVGMDVKQNGEQALNLYK 232
+L M+ G V ++ A++L+K
Sbjct: 444 NLAQMHAAGTGVPRSCSHAVDLFK 467
>gb|AAG30966.1|AC012396_2 (AC012396) hypothetical protein, 3' partial [Arabidopsis thaliana]
Length = 392
Score = 56.6 bits (135), Expect = 3e-07
Identities = 37/130 (28%), Positives = 65/130 (49%), Gaps = 8/130 (6%)
Query: 140 FMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQK-DLKKALANFKRG 198
F YF G+++++AKAL+ A N +GY+Y GV K + KA F+
Sbjct: 252 FYYFGLRGLRRDHAKALYWFSKA-------EFNGLGYLYVKGYGVDKRNYTKAREYFEMA 304
Query: 199 CHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPK 258
+ +D + +LG +Y G VK++ A + + + +A M++TG G+ K
Sbjct: 305 ANNEDPSGHYNLGVLYLKGTGVKKDVRHATKYFFVAANAGQPKAFYQLAKMFHTGVGLTK 364
Query: 259 DLDKAISYYK 268
+L+ A ++YK
Sbjct: 365 NLEMATTFYK 374
Score = 42.0 bits (97), Expect = 0.009
Identities = 26/97 (26%), Positives = 43/97 (43%)
Query: 28 GEKYFKMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYY 87
G Y + + +Y KA +++ + N G +LG +Y G GV +++ A Y+
Sbjct: 278 GLGYLYVKGYGVDKRNYTKAREYFEMAANNEDPSGHYNLGVLYLKGTGVKKDVRHATKYF 337
Query: 88 RRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYR 124
N A L M+ G G+ KNL A +Y+
Sbjct: 338 FVAANAGQPKAFYQLAKMFHTGVGLTKNLEMATTFYK 374
>ref|NP_177498.1| (NM_106015) hypothetical protein [Arabidopsis thaliana]
gb|AAG51809.1|AC079676_4 (AC079676) hypothetical protein; 26401-23451 [Arabidopsis thaliana]
Length = 604
Score = 56.6 bits (135), Expect = 3e-07
Identities = 37/130 (28%), Positives = 65/130 (49%), Gaps = 8/130 (6%)
Query: 140 FMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQK-DLKKALANFKRG 198
F YF G+++++AKAL+ A N +GY+Y GV K + KA F+
Sbjct: 252 FYYFGLRGLRRDHAKALYWFSKA-------EFNGLGYLYVKGYGVDKRNYTKAREYFEMA 304
Query: 199 CHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPK 258
+ +D + +LG +Y G VK++ A + + + +A M++TG G+ K
Sbjct: 305 ANNEDPSGHYNLGVLYLKGTGVKKDVRHATKYFFVAANAGQPKAFYQLAKMFHTGVGLTK 364
Query: 259 DLDKAISYYK 268
+L+ A ++YK
Sbjct: 365 NLEMATTFYK 374
Score = 48.1 bits (113), Expect = 1e-04
Identities = 56/260 (21%), Positives = 99/260 (37%), Gaps = 32/260 (12%)
Query: 28 GEKYFKMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYY 87
G Y + + +Y KA +++ + N G +LG +Y G GV +++ A Y+
Sbjct: 278 GLGYLYVKGYGVDKRNYTKAREYFEMAANNEDPSGHYNLGVLYLKGTGVKKDVRHATKYF 337
Query: 88 RRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYR----RG-----------CHLKGG 132
N A L M+ G G+ KNL A +Y+ RG +LKG
Sbjct: 338 FVAANAGQPKAFYQLAKMFHTGVGLTKNLEMATTFYKLVAERGPWSSLSRWALEAYLKGD 397
Query: 133 VSCGSLGFMYFNGTGVKQNYAKALFL-SKYA----CSLNYGISCNFVGYMYRNAKGVQKD 187
V + + + G + + A ++ KY C YG + ++
Sbjct: 398 VGKAFILYSRMSELGYEVAQSNAAWIVDKYGERSMCMGVYGFCTD------------KER 445
Query: 188 LKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVA 247
+A + + R + + + +G Y G +++ +A Y N+
Sbjct: 446 HDRAHSLWWRASEQGNEHAALLIGDAYYYGRGTERDFVRAAEAYMYAKSQSNAQAMFNLG 505
Query: 248 VMYYTGKGVPKDLDKAISYY 267
M+ G+G+P DL A YY
Sbjct: 506 YMHEHGEGLPFDLHLAKRYY 525
>ref|NP_455035.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
emb|CAD08897.1| (AL627266) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 384
Score = 55.8 bits (133), Expect = 6e-07
Identities = 37/135 (27%), Positives = 68/135 (49%), Gaps = 2/135 (1%)
Query: 66 LGSMYEDGD-GVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGD-GVQKNLPKAIYYY 123
+GS+Y+ G VD +++ ++R+ L A LG Y +G G++++L K +Y
Sbjct: 98 VGSLYDSGFVEVDDKEARSLQWFRKAAELGQADAQNILGYFYLNGKRGIKRDLQKGGQWY 157
Query: 124 RRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKG 183
+ +LG +Y++GT V +YA+A + A + + N++ +MY N +
Sbjct: 158 ELAAAQGNVDALINLGEIYYSGTRVPLDYARAFEFFERAAKMGKSRALNYLAWMYTNGQF 217
Query: 184 VQKDLKKALANFKRG 198
V D +KA F +G
Sbjct: 218 VDTDCRKAAELFAQG 232
>ref|NP_102363.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB48149.1| (AP002995) hypothetical protein [Mesorhizobium loti]
Length = 577
Score = 55.5 bits (132), Expect = 7e-07
Identities = 51/241 (21%), Positives = 95/241 (39%), Gaps = 9/241 (3%)
Query: 40 KRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLAC 99
+R D+ +A +Y+R+ +L S+Y G+GV +++ + + R + N A
Sbjct: 293 QRPDFAEAANWYRRAAEAGHQAAARALASLYLTGNGVAEDVEEGARWLRSSASAGNQQAQ 352
Query: 100 ASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLS 159
L ++ G G + ++ ++ +LG + G GV+Q+ +A
Sbjct: 353 TDLANLILGGAGEPDDGASVAGWFEAAASSGDLIAAFNLGLCFAKGVGVRQDEGQAAHWL 412
Query: 160 KYACSLNYGISCNFVGYMY----RNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYE 215
+ A G++ YMY ++ +GV D +A F R + V+L M
Sbjct: 413 RRAAE---GVA--EAQYMYARLLQDGRGVAADPTQARVWFARAADAGVLDARVALAEMLL 467
Query: 216 VGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGF 275
G E A+ L+++ + +Y G G+P D A +Y G
Sbjct: 468 NGRGGMPEPEAAMQLFEQAAADGHAGAMFAIGALYGAGHGLPLDQTTAQKWYAAAAGRGH 527
Query: 276 S 276
S
Sbjct: 528 S 528
>ref|NP_245305.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK02452.1| (AE006073) unknown [Pasteurella multocida]
Length = 242
Score = 55.5 bits (132), Expect = 7e-07
Identities = 38/142 (26%), Positives = 66/142 (45%), Gaps = 4/142 (2%)
Query: 129 LKGGVSC-GSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKD 187
LKG +LG +Y G GV Q++ KA + A + N + Y GV++D
Sbjct: 84 LKGDYQAQANLGILYARGQGVPQDFEKAYWWFSEAAEKGSIKAINNLAVFYLQGHGVKQD 143
Query: 188 LKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVA 247
++ ++ F++ + + + LG +YE ++ QA YKK +A
Sbjct: 144 IRHSITLFEKTANSGSLDAMLVLGQIYENELN---QMTQAFKWYKKAAEAGNHDAQFRLA 200
Query: 248 VMYYTGKGVPKDLDKAISYYKK 269
VMY G+G K+ +A+ +Y+K
Sbjct: 201 VMYENGEGTKKNKKQAVYWYQK 222
Score = 49.3 bits (116), Expect = 5e-05
Identities = 34/139 (24%), Positives = 63/139 (44%), Gaps = 3/139 (2%)
Query: 95 NHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAK 154
++ A A+LG +Y G GV ++ KA +++ + +L Y G GVKQ+
Sbjct: 87 DYQAQANLGILYARGQGVPQDFEKAYWWFSEAAEKGSIKAINNLAVFYLQGHGVKQDIRH 146
Query: 155 ALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMY 214
++ L + + + +G +Y N + +A +K+ + + L MY
Sbjct: 147 SITLFEKTANSGSLDAMLVLGQIYENE---LNQMTQAFKWYKKAAEAGNHDAQFRLAVMY 203
Query: 215 EVGMDVKQNGEQALNLYKK 233
E G K+N +QA+ Y+K
Sbjct: 204 ENGEGTKKNKKQAVYWYQK 222
Score = 44.3 bits (103), Expect = 0.002
Identities = 23/83 (27%), Positives = 44/83 (52%), Gaps = 3/83 (3%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
D ++ ++++ N LG +YE+ +T+A +Y++ NH A L
Sbjct: 143 DIRHSITLFEKTANSGSLDAMLVLGQIYENELN---QMTQAFKWYKKAAEAGNHDAQFRL 199
Query: 103 GSMYEDGDGVQKNLPKAIYYYRR 125
MYE+G+G +KN +A+Y+Y++
Sbjct: 200 AVMYENGEGTKKNKKQAVYWYQK 222
Score = 43.1 bits (100), Expect = 0.004
Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 6/155 (3%)
Query: 3 KSWTKKWFLILFLMASCSSYLVATTGEKYFKMATQAFKRGDYHKAVAFYKRSCNLRVGVG 62
K WT+ + LIL L A G Y + Q + D+ KA ++ +
Sbjct: 70 KEWTRAFELILPLALKGDYQAQANLGILYAR--GQGVPQ-DFEKAYWWFSEAAEKGSIKA 126
Query: 63 CTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYY 122
+L Y G GV Q+I ++ + + N + A LG +YE+ + +A +
Sbjct: 127 INNLAVFYLQGHGVKQDIRHSITLFEKTANSGSLDAMLVLGQIYEN---ELNQMTQAFKW 183
Query: 123 YRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALF 157
Y++ + L MY NG G K+N +A++
Sbjct: 184 YKKAAEAGNHDAQFRLAVMYENGEGTKKNKKQAVY 218
>ref|NP_460954.1| (NC_003197) putative TPR repeat protein [Salmonella typhimurium
LT2]
gb|AAL20913.1| (AE008788) putative TPR repeat protein [Salmonella typhimurium LT2]
Length = 564
Score = 55.1 bits (131), Expect = 1e-06
Identities = 35/135 (25%), Positives = 61/135 (44%)
Query: 151 NYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSL 210
NY A+ + N+ + F+ Y Y + GV +D KK L+ + L + + + +
Sbjct: 425 NYDAAMKWLTQSAEQNHPGALLFLAYAYNDGDGVAQDSKKYLSYLFKAAELGESDAQLEV 484
Query: 211 GYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKG 270
GY+ +G + +N +A KK +N+ +MY G GV KDL+KA +
Sbjct: 485 GYLNLIGEGMPKNLPEAYKWIKKSADQGNAQAHYNLGLMYRNGDGVEKDLNKAKLHLTAA 544
Query: 271 CTLGFSGSCKVLEEV 285
G + L+E+
Sbjct: 545 VKGGVKPALAALKEL 559
Score = 52.4 bits (124), Expect = 6e-06
Identities = 34/124 (27%), Positives = 57/124 (45%)
Query: 32 FKMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGC 91
+ + F+ +Y A+ + +S L Y DGDGV Q+ K + Y +
Sbjct: 414 YHLGKYEFECTNYDAAMKWLTQSAEQNHPGALLFLAYAYNDGDGVAQDSKKYLSYLFKAA 473
Query: 92 NLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQN 151
L A +G + G+G+ KNLP+A + ++ + +LG MY NG GV+++
Sbjct: 474 ELGESDAQLEVGYLNLIGEGMPKNLPEAYKWIKKSADQGNAQAHYNLGLMYRNGDGVEKD 533
Query: 152 YAKA 155
KA
Sbjct: 534 LNKA 537
>ref|NP_274346.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||B81095 conserved hypothetical protein NMB1327 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF41702.1| (AE002481) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 467
Score = 54.3 bits (129), Expect = 2e-06
Identities = 50/232 (21%), Positives = 98/232 (41%), Gaps = 26/232 (11%)
Query: 65 SLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYR 124
+L +Y G +++N A+ + R+ LG + G G+ + KA +YYR
Sbjct: 245 ALADIYLQGKHLERNHKLALHHAEAAAAERHPEGLRILGDICRYGLGIAPDTEKARHYYR 304
Query: 125 RGCHL------KGGVSCGSLG----FMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFV 174
+ + +S +L + + +++ A+ L+ + A +L+YG+ C
Sbjct: 305 QAAEAGSLSAYQKLISDSALNHPDQYGGIKDSAIRRQRAERLY--QKAQALHYGLQC--- 359
Query: 175 GYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKG 234
+ AL + L + +LG MY G + + +A ++K
Sbjct: 360 ----------APEYAAALKLYTEAAELGHSKAQTNLGSMYYFGQGMTADYNEARKWFEKA 409
Query: 235 CYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGSCKVLEEVI 286
K +N+A ++Y+G GV D +KA Y ++ G+ G VL+E++
Sbjct: 410 AAKKDSMAFYNLACIHYSGHGVEPDKEKACRYLQEAINNGY-GQKSVLQELL 460
>ref|NP_420846.1| (NC_002696) conserved hypothetical protein [Caulobacter crescentus
CB15]
gb|AAK24014.1| (AE005877) conserved hypothetical protein [Caulobacter crescentus
CB15]
Length = 330
Score = 53.1 bits (126), Expect = 4e-06
Identities = 42/187 (22%), Positives = 76/187 (40%)
Query: 47 AVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASLGSMY 106
AV Y R+ L ++ M+ G G+ +N A +Y R G
Sbjct: 112 AVKLYARAARLGDPNAMFNMAVMHRGGYGLPENPRLARAWYLRSGEAGLAAGAFGAGVAL 171
Query: 107 EDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLN 166
+G G + + + + + RR + + LG ++ G GV + KAL+ + A
Sbjct: 172 LEGYGGRSDARRGVLWLRRAIEMGSAEAMNELGRLHAEGLGVSSDSDKALYFYRAAARNE 231
Query: 167 YGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQ 226
+ +G + N + ++ A+ F+ D + +LG M E G VK + E
Sbjct: 232 LPDAMYRLGAAHYNGRLTDRNYVVAMRWFQLAADRGDYDAWFALGVMCETGRGVKSDREL 291
Query: 227 ALNLYKK 233
AL +Y++
Sbjct: 292 ALQMYRR 298
Score = 51.2 bits (121), Expect = 1e-05
Identities = 40/205 (19%), Positives = 87/205 (41%), Gaps = 5/205 (2%)
Query: 73 GDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDG-DGVQKNLPKAIYYYRRGCHLKG 131
G+G + ++ K + + R+ L + A LG++Y G +G+ + P A+ Y R L
Sbjct: 65 GEGREPDVAKGLVWLRKAVALGDTDAMVELGNLYLFGAEGLAVDAPGAVKLYARAARLGD 124
Query: 132 GVSCGSLGFMYFNGTGVKQN--YAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLK 189
+ ++ M+ G G+ +N A+A +L L G G G + D +
Sbjct: 125 PNAMFNMAVMHRGGYGLPENPRLARAWYLRSGEAGLAAG--AFGAGVALLEGYGGRSDAR 182
Query: 190 KALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVM 249
+ + +R + + LG ++ G+ V + ++AL Y+ + + +
Sbjct: 183 RGVLWLRRAIEMGSAEAMNELGRLHAEGLGVSSDSDKALYFYRAAARNELPDAMYRLGAA 242
Query: 250 YYTGKGVPKDLDKAISYYKKGCTLG 274
+Y G+ ++ A+ +++ G
Sbjct: 243 HYNGRLTDRNYVVAMRWFQLAADRG 267
Score = 48.5 bits (114), Expect = 9e-05
Identities = 49/230 (21%), Positives = 95/230 (41%), Gaps = 5/230 (2%)
Query: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDG-DGVDQNITKAVFYYRRGCNLRNHLACAS 101
D K + + +++ L LG++Y G +G+ + AV Y R L + A +
Sbjct: 71 DVAKGLVWLRKAVALGDTDAMVELGNLYLFGAEGLAVDAPGAVKLYARAARLGDPNAMFN 130
Query: 102 LGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLG--FMYFNGTGVKQNYAKALFLS 159
+ M+ G G+ +N A +Y R + G++ G+ G G G + + + +
Sbjct: 131 MAVMHRGGYGLPENPRLARAWYLRSG--EAGLAAGAFGAGVALLEGYGGRSDARRGVLWL 188
Query: 160 KYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMD 219
+ A + + N +G ++ GV D KAL ++ + + LG + G
Sbjct: 189 RRAIEMGSAEAMNELGRLHAEGLGVSSDSDKALYFYRAAARNELPDAMYRLGAAHYNGRL 248
Query: 220 VKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKK 269
+N A+ ++ + VM TG+GV D + A+ Y++
Sbjct: 249 TDRNYVVAMRWFQLAADRGDYDAWFALGVMCETGRGVKSDRELALQMYRR 298
>ref|NP_207316.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||G64584 conserved hypothetical protein HP0519 - Helicobacter pylori
(strain 26695)
gb|AAD07587.1| (AE000566) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 276
Score = 50.1 bits (118), Expect = 3e-05
Identities = 57/255 (22%), Positives = 98/255 (38%), Gaps = 33/255 (12%)
Query: 31 YFKMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYR-- 88
YF+ F +G Y +A ++ + +G+G L MY +G GV + KA FY
Sbjct: 52 YFENGLDHFNQGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAENA 111
Query: 89 -RGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTG 147
+G LG M +G G++K+L +A+ YR + S
Sbjct: 112 IKGYGSGLLGGALILGRMQAEGLGMKKDLKQALKTYRHVVRMFSNKS------------- 158
Query: 148 VKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASC 207
N+A L A + I F+ +A + K KK K+ +KD
Sbjct: 159 --TNFANNFRLPNLAEFTSMLIGSRFIDLSGLSANPI-KFGKKFGILVKKSTQIKDKT-- 213
Query: 208 VSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYY 267
++E ++ N + L K+ + G + + + Y G G K D+A +
Sbjct: 214 ----LLWEDIAEISSN----ITLLKQ----QMGEILYRIGIAYKEGLGTRKKKDRAKKFL 261
Query: 268 KKGCTLGFSGSCKVL 282
+K G+ + + L
Sbjct: 262 QKSAEFGYEKAMEAL 276
>gb|AAH30908.1| (BC030908) Unknown (protein for IMAGE:4504268) [Mus musculus]
Length = 292
Score = 49.7 bits (117), Expect = 4e-05
Identities = 68/289 (23%), Positives = 97/289 (33%), Gaps = 66/289 (22%)
Query: 31 YFKMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRR- 89
YF F+ G Y +A+A ++ + LG MY DG G N K V Y R+
Sbjct: 7 YFLRGQLYFEEGWYEEALAQFEE-IQEKDHQAIYQLGVMYYDGLGTIANAEKGVNYMRKI 65
Query: 90 ---GCNLRNHL---ACASLGSMYEDGDGVQ------------------------------ 113
C HL A +LG Y +G GV+
Sbjct: 66 LDSSCPQTMHLKFAAAYNLGRAYFEGKGVKRSDEEAERLWLLAADNGNPKASVKAQSILG 125
Query: 114 --------KNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSL 165
K L KA +++ C S G+LG MYF G G++Q+ AL + A
Sbjct: 126 LFYSMKEPKELEKAFFWHSEACGNGSLESQGALGLMYFYGQGIRQDTDAALHCLREAAER 185
Query: 166 -NYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNG 224
N V Y Y+ K K ++ KR + + ++ + + G
Sbjct: 186 GNVYAQGTLVEYYYK-----MKFFTKCVSFSKRIADYDEVHDIPMIAHVTDCLPEFIIKG 240
Query: 225 EQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTL 273
Y C G G+ KD + A YY K C L
Sbjct: 241 MAMAAFYHGRC--------------LQLGLGIMKDEESAKHYYSKACRL 275
Score = 45.8 bits (107), Expect = 6e-04
Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 17/187 (9%)
Query: 94 RNHLACASLGSMYEDGDGVQKNLPKAIYYYRR----GC----HLKGGVSCGSLGFMYFNG 145
++H A LG MY DG G N K + Y R+ C HLK + +LG YF G
Sbjct: 33 KDHQAIYQLGVMYYDGLGTIANAEKGVNYMRKILDSSCPQTMHLKFAAAY-NLGRAYFEG 91
Query: 146 TGVKQNYAKALFLSKYAC---SLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLK 202
GVK++ +A L A + + + ++ + K K+L+KA C
Sbjct: 92 KGVKRSDEEAERLWLLAADNGNPKASVKAQSILGLFYSMK-EPKELEKAFFWHSEACGNG 150
Query: 203 DGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDK 262
S +LG MY G ++Q+ + AL+ ++ +RG+ ++ Y K K K
Sbjct: 151 SLESQGALGLMYFYGQGIRQDTDAALHCLREAA--ERGNVYAQGTLVEYYYK--MKFFTK 206
Query: 263 AISYYKK 269
+S+ K+
Sbjct: 207 CVSFSKR 213
>ref|NP_283034.1| (NC_003116) hypothetical protein NMA0184 [Neisseria meningitidis
Z2491]
pir||F82012 hypothetical protein NMA0184 [imported] - Neisseria meningitidis
(group A strain Z2491)
emb|CAB83499.1| (AL162752) hypothetical protein NMA0184 [Neisseria meningitidis
Z2491]
Length = 468
Score = 49.7 bits (117), Expect = 4e-05
Identities = 43/180 (23%), Positives = 75/180 (40%), Gaps = 5/180 (2%)
Query: 31 YFKMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRG 90
Y+ +A ++GD A+ Y+++ L V C LG +Y G GV N +A Y
Sbjct: 136 YYHLARHHQRQGDVETAIEQYEKAAALGVTAACWQLGQIYFYGTGVSPNHAQAEHYLEPA 195
Query: 91 CNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQ 150
H+A +L D Q+ P+A+ +YRR + + L G ++
Sbjct: 196 AQ-AGHIAAQTL---LADLLAAQRK-PEALEWYRRAADKEQAEAQSKLAQYALTGELSER 250
Query: 151 NYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSL 210
+ +A +K A ++ + +G +YR G++ D A + R L A+ L
Sbjct: 251 DPFQAARYAKAAAEKDHPEALKIMGDLYRYGLGIKADNHIAHDYYHRAAALGSAAAAQKL 310
>ref|XP_134130.1| (XM_134130) similar to Ank repeat containing protein~data
source:Pfam, source key:PF00023, evidence:ISS~putative
[Mus musculus]
Length = 367
Score = 49.7 bits (117), Expect = 4e-05
Identities = 68/289 (23%), Positives = 97/289 (33%), Gaps = 66/289 (22%)
Query: 31 YFKMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRR- 89
YF F+ G Y +A+A ++ + LG MY DG G N K V Y R+
Sbjct: 82 YFLRGQLYFEEGWYEEALAQFEE-IQEKDHQAIYQLGVMYYDGLGTIANAEKGVNYMRKI 140
Query: 90 ---GCNLRNHL---ACASLGSMYEDGDGVQ------------------------------ 113
C HL A +LG Y +G GV+
Sbjct: 141 LDSSCPQTMHLKFAAAYNLGRAYFEGKGVKRSDEEAERLWLLAADNGNPKASVKAQSILG 200
Query: 114 --------KNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSL 165
K L KA +++ C S G+LG MYF G G++Q+ AL + A
Sbjct: 201 LFYSMKEPKELEKAFFWHSEACGNGSLESQGALGLMYFYGQGIRQDTDAALHCLREAAER 260
Query: 166 -NYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNG 224
N V Y Y+ K K ++ KR + + ++ + + G
Sbjct: 261 GNVYAQGTLVEYYYK-----MKFFTKCVSFSKRIADYDEVHDIPMIAHVTDCLPEFIIKG 315
Query: 225 EQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTL 273
Y C G G+ KD + A YY K C L
Sbjct: 316 MAMAAFYHGRC--------------LQLGLGIMKDEESAKHYYSKACRL 350
Score = 45.8 bits (107), Expect = 6e-04
Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 17/187 (9%)
Query: 94 RNHLACASLGSMYEDGDGVQKNLPKAIYYYRR----GC----HLKGGVSCGSLGFMYFNG 145
++H A LG MY DG G N K + Y R+ C HLK + +LG YF G
Sbjct: 108 KDHQAIYQLGVMYYDGLGTIANAEKGVNYMRKILDSSCPQTMHLKFAAAY-NLGRAYFEG 166
Query: 146 TGVKQNYAKALFLSKYAC---SLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLK 202
GVK++ +A L A + + + ++ + K K+L+KA C
Sbjct: 167 KGVKRSDEEAERLWLLAADNGNPKASVKAQSILGLFYSMK-EPKELEKAFFWHSEACGNG 225
Query: 203 DGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDK 262
S +LG MY G ++Q+ + AL+ ++ +RG+ ++ Y K K K
Sbjct: 226 SLESQGALGLMYFYGQGIRQDTDAALHCLREAA--ERGNVYAQGTLVEYYYK--MKFFTK 281
Query: 263 AISYYKK 269
+S+ K+
Sbjct: 282 CVSFSKR 288
>ref|NP_080554.1| (NM_026278) RIKEN cDNA 2310006J04 [Mus musculus]
dbj|BAB30345.1| (AK016626) Ank repeat containing protein~data source:Pfam, source
key:PF00023, evidence:ISS~putative [Mus musculus]
Length = 346
Score = 49.7 bits (117), Expect = 4e-05
Identities = 68/289 (23%), Positives = 97/289 (33%), Gaps = 66/289 (22%)
Query: 31 YFKMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRR- 89
YF F+ G Y +A+A ++ + LG MY DG G N K V Y R+
Sbjct: 61 YFLRGQLYFEEGWYEEALAQFEE-IQEKDHQAIYQLGVMYYDGLGTIANAEKGVNYMRKI 119
Query: 90 ---GCNLRNHL---ACASLGSMYEDGDGVQ------------------------------ 113
C HL A +LG Y +G GV+
Sbjct: 120 LDSSCPQTMHLKFAAAYNLGRAYFEGKGVKRSDEEAERLWLLAADNGNPKASVKAQSILG 179
Query: 114 --------KNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSL 165
K L KA +++ C S G+LG MYF G G++Q+ AL + A
Sbjct: 180 LFYSMKEPKELEKAFFWHSEACGNGSLESQGALGLMYFYGQGIRQDTDAALHCLREAAER 239
Query: 166 -NYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNG 224
N V Y Y+ K K ++ KR + + ++ + + G
Sbjct: 240 GNVYAQGTLVEYYYK-----MKFFTKCVSFSKRIADYDEVHDIPMIAHVTDCLPEFIIKG 294
Query: 225 EQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTL 273
Y C G G+ KD + A YY K C L
Sbjct: 295 MAMAAFYHGRC--------------LQLGLGIMKDEESAKHYYSKACRL 329
Score = 45.8 bits (107), Expect = 6e-04
Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 17/187 (9%)
Query: 94 RNHLACASLGSMYEDGDGVQKNLPKAIYYYRR----GC----HLKGGVSCGSLGFMYFNG 145
++H A LG MY DG G N K + Y R+ C HLK + +LG YF G
Sbjct: 87 KDHQAIYQLGVMYYDGLGTIANAEKGVNYMRKILDSSCPQTMHLKFAAAY-NLGRAYFEG 145
Query: 146 TGVKQNYAKALFLSKYAC---SLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLK 202
GVK++ +A L A + + + ++ + K K+L+KA C
Sbjct: 146 KGVKRSDEEAERLWLLAADNGNPKASVKAQSILGLFYSMK-EPKELEKAFFWHSEACGNG 204
Query: 203 DGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDK 262
S +LG MY G ++Q+ + AL+ ++ +RG+ ++ Y K K K
Sbjct: 205 SLESQGALGLMYFYGQGIRQDTDAALHCLREAA--ERGNVYAQGTLVEYYYK--MKFFTK 260
Query: 263 AISYYKK 269
+S+ K+
Sbjct: 261 CVSFSKR 267
>gb|EAA00460.1| (AAAB01008986) agCP9334 [Anopheles gambiae str. PEST]
Length = 228
Score = 49.3 bits (116), Expect = 5e-05
Identities = 47/179 (26%), Positives = 77/179 (42%), Gaps = 28/179 (15%)
Query: 112 VQKNLPKAIYYYRRGCHL-KGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACS-LNYGI 169
V++ + K YR GC+ K C LG G+++++ KA + + C NYG
Sbjct: 32 VKEYIDKLGVEYRFGCYSEKKPEVCHLLGDYL---EGIRKDFEKAAKVYRSNCDDYNYGK 88
Query: 170 SC------NFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYE---VGMDV 220
SC F+G + KG D KA A +++GC L D +C+ G + + ++
Sbjct: 89 SCLKYGNYTFLGKGRTSEKG---DPAKAYAYYEKGCALNDPDACLHSGLLLVSKLMPKEI 145
Query: 221 KQNGEQALNLYKKGCYLKRGSGCHNVAVMYYT-----------GKGVPKDLDKAISYYK 268
++ + L KK C + C ++ MY + G G +D KA Y K
Sbjct: 146 TRDVPKGFELLKKSCEMNNAGACFYLSGMYISGVLKEDQMYAKGDGTARDEKKAEKYKK 204
Score = 48.9 bits (115), Expect = 7e-05
Identities = 43/151 (28%), Positives = 65/151 (42%), Gaps = 11/151 (7%)
Query: 76 VDQNITKAVFYYRRGC-NLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGC-HLKGGV 133
V + I K YR GC + + C LG E G++K+ KA YR C G
Sbjct: 32 VKEYIDKLGVEYRFGCYSEKKPEVCHLLGDYLE---GIRKDFEKAAKVYRSNCDDYNYGK 88
Query: 134 SC---GSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRN---AKGVQKD 187
SC G+ F+ T K + AKA + C+LN +C G + + K + +D
Sbjct: 89 SCLKYGNYTFLGKGRTSEKGDPAKAYAYYEKGCALNDPDACLHSGLLLVSKLMPKEITRD 148
Query: 188 LKKALANFKRGCHLKDGASCVSLGYMYEVGM 218
+ K K+ C + + +C L MY G+
Sbjct: 149 VPKGFELLKKSCEMNNAGACFYLSGMYISGV 179
Score = 42.4 bits (98), Expect = 0.007
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 182 KGVQKDLKKALANFKRGCH-LKDGASCVSLGYMYEVGM---DVKQNGEQALNLYKKGCYL 237
+G++KD +KA ++ C G SC+ G +G K + +A Y+KGC L
Sbjct: 64 EGIRKDFEKAAKVYRSNCDDYNYGKSCLKYGNYTFLGKGRTSEKGDPAKAYAYYEKGCAL 123
Query: 238 KRGSGCHNVAVMYYTG---KGVPKDLDKAISYYKKGCTLGFSGSC 279
C + ++ + K + +D+ K KK C + +G+C
Sbjct: 124 NDPDACLHSGLLLVSKLMPKEITRDVPKGFELLKKSCEMNNAGAC 168
>ref|NP_223186.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71927 hypothetical protein jhp0468 - Helicobacter pylori (strain J99)
gb|AAD06051.1| (AE001481) putative [Helicobacter pylori J99]
Length = 283
Score = 49.3 bits (116), Expect = 5e-05
Identities = 63/255 (24%), Positives = 109/255 (42%), Gaps = 34/255 (13%)
Query: 31 YFKMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYR-- 88
YF+ F +G Y +A +K + +G+G L MY +G GV + KA FY +
Sbjct: 60 YFENGLDHFNQGQYKQAFKDFKLAQEYSIGLGNVYLAKMYLEGKGVKVDYKKAQFYAQNA 119
Query: 89 -RGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTG 147
+G LG M +G G++K+L +A+ YR H+ S S F G+
Sbjct: 120 IKGYGSGLLGGALILGRMQAEGLGMKKDLKQALKTYR---HVVRMFSNKSANFANKFGSN 176
Query: 148 VKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASC 207
+ + + L S++ L+ G+S N + + N G+ +KKAL +KD
Sbjct: 177 LAE-FTSMLIGSRF-IDLS-GLSANPI--KFGNKFGIL--VKKAL-------QIKDNT-- 220
Query: 208 VSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYY 267
+E ++ N + L K+ + G + + + Y G G K D+A +
Sbjct: 221 ----LSWEDIAEISSN----IILLKQ----QMGEILYRIGIAYKEGLGTRKKKDRAKKFL 268
Query: 268 KKGCTLGFSGSCKVL 282
+K G+ + + L
Sbjct: 269 QKSAEFGYEKAMEAL 283
>ref|NP_286374.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_308712.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
gb|AAG54982.1|AE005243_11 (AE005243) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB34108.1| (AP002552) hypothetical protein [Escherichia coli O157:H7]
Length = 184
Score = 48.5 bits (114), Expect = 9e-05
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 66 LGSMYEDG-DGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYR 124
LG Y G DG + T+A ++Y + N A + LG +Y G GV+ + KAI +Y+
Sbjct: 69 LGEFYLHGSDGKPLDYTQARYWYEQSAEQENPRAQSKLGWIYLKGLGVKPDTRKAILWYK 128
Query: 125 RGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNY 167
+ +LG +Y NG+G+ N+ ++ K A +Y
Sbjct: 129 EAAEQGYAHAQYTLGLIYRNGSGINVNHYESQKWLKLAAKQHY 171
Score = 44.7 bits (104), Expect = 0.001
Identities = 26/84 (30%), Positives = 40/84 (46%), Gaps = 1/84 (1%)
Query: 102 LGSMYEDG-DGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSK 160
LG Y G DG + +A Y+Y + + + LG++Y G GVK + KA+ K
Sbjct: 69 LGEFYLHGSDGKPLDYTQARYWYEQSAEQENPRAQSKLGWIYLKGLGVKPDTRKAILWYK 128
Query: 161 YACSLNYGISCNFVGYMYRNAKGV 184
A Y + +G +YRN G+
Sbjct: 129 EAAEQGYAHAQYTLGLIYRNGSGI 152
>ref|NP_435252.1| (NC_003037) hypothetical protein [Sinorhizobium meliloti]
gb|AAK64664.1| (AE007195) hypothetical protein [Sinorhizobium meliloti]
Length = 244
Score = 48.1 bits (113), Expect = 1e-04
Identities = 40/188 (21%), Positives = 77/188 (40%), Gaps = 1/188 (0%)
Query: 42 GDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACAS 101
GDY A+ ++ V ++G+ + +G GV +N A + R + + +
Sbjct: 11 GDYGSALRIWEPLARAGVARAQNNIGACFAEGLGVPENRELACKWLRLAAEAGDPVGQRN 70
Query: 102 LGSMYEDG-DGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSK 160
+++ G G + A YYRR + L ++ G + + +A ++
Sbjct: 71 YAALHMQGLAGTDADYGIAAEYYRRAAEKGDAPAQDMLSWLLLEGEIMTADPLEARRWAE 130
Query: 161 YACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDV 220
A S +G ++ NA GV++D +KA+ + + D + LG +G
Sbjct: 131 CAAEAGIASSMTRLGMLHHNALGVERDAQKAVYWWLKAAERGDADAQAMLGAACHMGAGT 190
Query: 221 KQNGEQAL 228
+NG AL
Sbjct: 191 IRNGVTAL 198
>ref|NP_415180.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P77296|YBET_ECOLI Hypothetical protein ybeT
pir||E64799 ybeT protein - Escherichia coli
gb|AAB40848.1| (U82598) hypothetical protein [Escherichia coli]
gb|AAC73748.1| (AE000169) orf, hypothetical protein [Escherichia coli K12]
dbj|BAA35294.1| (D90704) Hypothetical protein SPAC24B11.10c [Escherichia coli]
dbj|BAA35299.1| (D90705) Hypothetical protein SPAC24B11.10c [Escherichia coli]
Length = 184
Score = 47.0 bits (110), Expect = 3e-04
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 66 LGSMYEDG-DGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYR 124
LG Y G DG + T+A ++Y + N A + LG +Y G GV+ + KAI +Y+
Sbjct: 69 LGEFYLHGSDGKPLDYTQARYWYEQSAEQENPRAQSKLGWIYLKGLGVKPDTRKAILWYK 128
Query: 125 RGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNY 167
+ +LG +Y NG+G+ N+ ++ K +Y
Sbjct: 129 EAAEQGYAHAQYTLGLIYRNGSGINVNHYESQKWLKLTAKQHY 171
Score = 44.7 bits (104), Expect = 0.001
Identities = 26/84 (30%), Positives = 40/84 (46%), Gaps = 1/84 (1%)
Query: 102 LGSMYEDG-DGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSK 160
LG Y G DG + +A Y+Y + + + LG++Y G GVK + KA+ K
Sbjct: 69 LGEFYLHGSDGKPLDYTQARYWYEQSAEQENPRAQSKLGWIYLKGLGVKPDTRKAILWYK 128
Query: 161 YACSLNYGISCNFVGYMYRNAKGV 184
A Y + +G +YRN G+
Sbjct: 129 EAAEQGYAHAQYTLGLIYRNGSGI 152
>ref|XP_003620.2| (XM_003620) similar to hypothetical protein DKFZp761O0113 [Homo
sapiens]
Length = 347
Score = 46.2 bits (108), Expect = 5e-04
Identities = 66/289 (22%), Positives = 95/289 (32%), Gaps = 66/289 (22%)
Query: 31 YFKMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRR- 89
YF F+ G Y +A+ ++ + LG MY DG G + K V Y ++
Sbjct: 62 YFLRGQLYFEEGWYEEALEQFEE-IKEKDHQATYQLGVMYYDGLGTTLDAEKGVDYMKKI 120
Query: 90 ---GCNLRNHL---ACASLGSMYEDGDGVQ------------------------------ 113
C HL A +LG Y +G GV+
Sbjct: 121 LDSPCPKARHLKFAAAYNLGRAYYEGKGVKRSNEEAERLWLIAADNGNPKASVKAQSMLG 180
Query: 114 --------KNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSL 165
K L KA Y++ C S G+LG MY G G++Q+ AL + A
Sbjct: 181 LYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYLYGQGIRQDTEAALQCLREAAER 240
Query: 166 -NYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNG 224
N N V Y Y+ K K +A KR + + + + + G
Sbjct: 241 GNVYAQGNLVEYYYK-----MKFFTKCVAFSKRIADYDEVHDIPMIAQVTDCLPEFIGRG 295
Query: 225 EQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTL 273
+ Y C G G+ +D A YY K C L
Sbjct: 296 MAMASFYHARC--------------LQLGLGITRDETTAKHYYSKACRL 330
Score = 43.9 bits (102), Expect = 0.002
Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 13/172 (7%)
Query: 94 RNHLACASLGSMYEDGDGVQKNLPKAIYYYR--------RGCHLKGGVSCGSLGFMYFNG 145
++H A LG MY DG G + K + Y + + HLK + +LG Y+ G
Sbjct: 88 KDHQATYQLGVMYYDGLGTTLDAEKGVDYMKKILDSPCPKARHLKFAAAY-NLGRAYYEG 146
Query: 146 TGVKQNYAKALFLSKYAC---SLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLK 202
GVK++ +A L A + + + +Y + K K+L+KA C
Sbjct: 147 KGVKRSNEEAERLWLIAADNGNPKASVKAQSMLGLYYSTK-EPKELEKAFYWHSEACGNG 205
Query: 203 DGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGK 254
+ S +LG MY G ++Q+ E AL ++ N+ YY K
Sbjct: 206 NLESQGALGLMYLYGQGIRQDTEAALQCLREAAERGNVYAQGNLVEYYYKMK 257
>ref|NP_518145.1| (NC_003295) PUTATIVE SIGNAL PEPTIDE PROTEIN [Ralstonia
solanacearum]
emb|CAD13552.1| (AL646057) PUTATIVE SIGNAL PEPTIDE PROTEIN [Ralstonia solanacearum]
Length = 252
Score = 46.2 bits (108), Expect = 5e-04
Identities = 43/188 (22%), Positives = 82/188 (42%), Gaps = 8/188 (4%)
Query: 33 KMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCN 92
++A ++ ++ +A+ + + + + M G+G AV + RR +
Sbjct: 50 QIAIAHYEHNEFGRAIDEFAEAAQRGNRLAQFNYAMMLMRGEGTVAQPEAAVKWLRRAAD 109
Query: 93 LRNHLACASLGSMYEDGDGVQKNLPKAIYYYRR---GCHLKGGVSCGSLGFMYFNGTGVK 149
+ A + G ++E G+ V ++LP+A +Y R G H++ + +L YF G GV
Sbjct: 110 NQMTHAQFAYGELFERGELVPRSLPEANKWYERAAAGGHIE---AQRALATNYFTGRGVP 166
Query: 150 QNYAKALFLSKYACSLNYGISCNFVGYMYRNAKG--VQKDLKKALANFKRGCHLKDGASC 207
++Y +A K A G S VG Y + V +D+++A + R D +
Sbjct: 167 RDYGRAFTWYKKAAEAGDGPSQYIVGSYYERGEPGVVAQDIEQAKLWYGRAAAQGDPGAL 226
Query: 208 VSLGYMYE 215
L + E
Sbjct: 227 AKLRELVE 234
>dbj|BAA92563.1| (AB037746) KIAA1325 protein [Homo sapiens]
Length = 354
Score = 46.2 bits (108), Expect = 5e-04
Identities = 66/289 (22%), Positives = 95/289 (32%), Gaps = 66/289 (22%)
Query: 31 YFKMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRR- 89
YF F+ G Y +A+ ++ + LG MY DG G + K V Y ++
Sbjct: 69 YFLRGQLYFEEGWYEEALEQFEE-IKEKDHQATYQLGVMYYDGLGTTLDAEKGVDYMKKI 127
Query: 90 ---GCNLRNHL---ACASLGSMYEDGDGVQ------------------------------ 113
C HL A +LG Y +G GV+
Sbjct: 128 LDSPCPKARHLKFAAAYNLGRAYYEGKGVKRSNEEAERLWLIAADNGNPKASVKAQSMLG 187
Query: 114 --------KNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSL 165
K L KA Y++ C S G+LG MY G G++Q+ AL + A
Sbjct: 188 LYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYLYGQGIRQDTEAALQCLREAAER 247
Query: 166 -NYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNG 224
N N V Y Y+ K K +A KR + + + + + G
Sbjct: 248 GNVYAQGNLVEYYYK-----MKFFTKCVAFSKRIADYDEVHDIPMIAQVTDCLPEFIGRG 302
Query: 225 EQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTL 273
+ Y C G G+ +D A YY K C L
Sbjct: 303 MAMASFYHARC--------------LQLGLGITRDETTAKHYYSKACRL 337
Score = 43.9 bits (102), Expect = 0.002
Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 13/172 (7%)
Query: 94 RNHLACASLGSMYEDGDGVQKNLPKAIYYYR--------RGCHLKGGVSCGSLGFMYFNG 145
++H A LG MY DG G + K + Y + + HLK + +LG Y+ G
Sbjct: 95 KDHQATYQLGVMYYDGLGTTLDAEKGVDYMKKILDSPCPKARHLKFAAAY-NLGRAYYEG 153
Query: 146 TGVKQNYAKALFLSKYAC---SLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLK 202
GVK++ +A L A + + + +Y + K K+L+KA C
Sbjct: 154 KGVKRSNEEAERLWLIAADNGNPKASVKAQSMLGLYYSTK-EPKELEKAFYWHSEACGNG 212
Query: 203 DGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGK 254
+ S +LG MY G ++Q+ E AL ++ N+ YY K
Sbjct: 213 NLESQGALGLMYLYGQGIRQDTEAALQCLREAAERGNVYAQGNLVEYYYKMK 264
>ref|NP_060879.1| (NM_018409) hypothetical protein DKFZp761O0113 [Homo sapiens]
pir||T47138 hypothetical protein DKFZp761O0113.1 - human
emb|CAB82313.1| (AL161975) hypothetical protein [Homo sapiens]
Length = 321
Score = 46.2 bits (108), Expect = 5e-04
Identities = 66/289 (22%), Positives = 95/289 (32%), Gaps = 66/289 (22%)
Query: 31 YFKMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRR- 89
YF F+ G Y +A+ ++ + LG MY DG G + K V Y ++
Sbjct: 36 YFLRGQLYFEEGWYEEALEQFEE-IKEKDHQATYQLGVMYYDGLGTTLDAEKGVDYMKKI 94
Query: 90 ---GCNLRNHL---ACASLGSMYEDGDGVQ------------------------------ 113
C HL A +LG Y +G GV+
Sbjct: 95 LDSPCPKARHLKFAAAYNLGRAYYEGKGVKRSNEEAERLWLIAADNGNPKASVKAQSMLG 154
Query: 114 --------KNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSL 165
K L KA Y++ C S G+LG MY G G++Q+ AL + A
Sbjct: 155 LYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYLYGQGIRQDTEAALQCLREAAER 214
Query: 166 -NYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNG 224
N N V Y Y+ K K +A KR + + + + + G
Sbjct: 215 GNVYAQGNLVEYYYK-----MKFFTKCVAFSKRIADYDEVHDIPMIAQVTDCLPEFIGRG 269
Query: 225 EQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTL 273
+ Y C G G+ +D A YY K C L
Sbjct: 270 MAMASFYHARC--------------LQLGLGITRDETTAKHYYSKACRL 304
Score = 43.9 bits (102), Expect = 0.002
Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 13/172 (7%)
Query: 94 RNHLACASLGSMYEDGDGVQKNLPKAIYYYR--------RGCHLKGGVSCGSLGFMYFNG 145
++H A LG MY DG G + K + Y + + HLK + +LG Y+ G
Sbjct: 62 KDHQATYQLGVMYYDGLGTTLDAEKGVDYMKKILDSPCPKARHLKFAAAY-NLGRAYYEG 120
Query: 146 TGVKQNYAKALFLSKYAC---SLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLK 202
GVK++ +A L A + + + +Y + K K+L+KA C
Sbjct: 121 KGVKRSNEEAERLWLIAADNGNPKASVKAQSMLGLYYSTK-EPKELEKAFYWHSEACGNG 179
Query: 203 DGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGK 254
+ S +LG MY G ++Q+ E AL ++ N+ YY K
Sbjct: 180 NLESQGALGLMYLYGQGIRQDTEAALQCLREAAERGNVYAQGNLVEYYYKMK 231
>ref|NP_592847.1| (NC_003424) similar to yeast protoplast regeneration and killer
toxin resistance protein [Schizosaccharomyces pombe]
sp|Q09897|YAIA_SCHPO Hypothetical protein C24B11.10c in chromosome I
pir||S62555 protoplast regeneration, killer toxin resistance protein homolog -
fission yeast (Schizosaccharomyces pombe)
pir||T38337 protoplast regeneration, killer toxin resistance protein homolog -
fission yeast (Schizosaccharomyces pombe)
emb|CAA91775.1| (Z67757) similar to yeast protoplast regeneration and killer toxin
resistance protein [Schizosaccharomyces pombe]
Length = 932
Score = 43.5 bits (101), Expect = 0.003
Identities = 54/253 (21%), Positives = 97/253 (37%), Gaps = 9/253 (3%)
Query: 41 RGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACA 100
R D KA Y + + + + G GV + +K V Y++ + A
Sbjct: 656 RRDLGKAFELYSLAAKKGHPLSNYRVAVCLQTGTGVKPDTSKCVAIYKKAAEMDVVEAMF 715
Query: 101 SLGSMYEDGD-GVQKNLPKAIYYYRRGCHLKGGVSCGSLG-----FMYFNGTGVKQNYAK 154
+ +Y +G G ++N+ + + R C KG S ++ + + GV +
Sbjct: 716 RIALIYLNGLLGQKRNISLGVQWLERACKSKGPESVRAMYELAKIYEQPDRYGVSATPER 775
Query: 155 ALFLSKYACSLNYGISCNFVGYMYRNAK-GVQKDLKKALANFKRGCHLKDGASCVSLGYM 213
L K + Y + +G Y + G + ++++ + R G + + L
Sbjct: 776 KFELYKQSAVYGYAAAQCKLGECYEHGLLGCLAEPRRSIFWYTRAAEQDYGEAELGLSGW 835
Query: 214 YEVGMD--VKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGC 271
Y G + + +NGE+AL K + V M G GV D A ++Y +
Sbjct: 836 YLTGSEGILPKNGEEALLWAHKAACKGLAKAQYAVGFMMEQGIGVAADPSSAHNWYIRAA 895
Query: 272 TLGFSGSCKVLEE 284
GF + K LEE
Sbjct: 896 KQGFPKAKKRLEE 908
>ref|NP_249051.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa]
pir||F83599 hypothetical protein PA0360 [imported] - Pseudomonas aeruginosa
(strain PAO1)
gb|AAG03749.1|AE004474_1 (AE004474) hypothetical protein [Pseudomonas aeruginosa]
Length = 328
Score = 42.7 bits (99), Expect = 0.005
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 5/145 (3%)
Query: 25 ATTGEKY--FKMATQAFKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITK 82
A TGE F +++ +Y A ++ ++ + L +Y DGDG Q+ T+
Sbjct: 56 AETGEPQALFDFGAYFYQQQNYASAREWWGKAAAAGMVRAQIQLAMLYRDGDGGPQDKTE 115
Query: 83 AVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMY 142
A ++R+ + A +G +Y G+GV ++ KA ++ R + +LG+ Y
Sbjct: 116 AARWFRKAAEQGDAAAQNEMGVLYWRGEGVDQDRVKAGTWFERAAASGSEDAETNLGWFY 175
Query: 143 FN---GTGVKQNYAKALFLSKYACS 164
+ G + +A L +YA S
Sbjct: 176 LDDSQGVYSATSDEEAALLDRYAGS 200
>gb|AAC36055.1| (AF035820) gibberellin action negative regulator SPY [Hordeum
vulgare] [Hordeum vulgare subsp. vulgare]
Length = 944
Score = 42.7 bits (99), Expect = 0.005
Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 16/157 (10%)
Query: 34 MATQAFKRGDYHKAVAFYKRSC--NLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGC 91
+ T+ GD ++ VA+YK++ N +LG Y G N A+ +Y
Sbjct: 258 LGTKVKIEGDINQGVAYYKKALFYNWHYADAMYNLGVAY----GEMLNFEMAIVFYELAL 313
Query: 92 --NLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGV--SCGSLGFMYFNGTG 147
N R AC +LG +Y+D D NL KA+ Y+ +K S +LG +Y
Sbjct: 314 HFNPRCAEACNNLGVIYKDRD----NLDKAVECYQMALSIKPNFSQSLNNLGVVY--TVQ 367
Query: 148 VKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGV 184
K + A ++ + Y + N +G +YR+A +
Sbjct: 368 GKMDAAASMIEKAILANPTYAEAYNNLGVLYRDAGSI 404
>ref|NP_643252.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM37788.1| (AE011936) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 252
Score = 42.7 bits (99), Expect = 0.005
Identities = 26/106 (24%), Positives = 48/106 (44%)
Query: 177 MYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCY 236
MY +G+ D A+ ++ + + LG +E+G N A+ Y++
Sbjct: 44 MYAEGRGIAADPAAAMLWYEVAANAGCAEAMNQLGRCHELGFGTAINAVLAVLWYRRAAE 103
Query: 237 LKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGSCKVL 282
G +N+A MY +G+GV +D +A++ Y + G + S L
Sbjct: 104 HGLAWGMYNLAHMYASGRGVAQDHAQALALYHRAAEAGHAKSMNFL 149
>emb|CAA76834.1| (Y17720) SPINDLY protein [Petunia x hybrida]
Length = 932
Score = 42.4 bits (98), Expect = 0.007
Identities = 40/157 (25%), Positives = 68/157 (42%), Gaps = 16/157 (10%)
Query: 34 MATQAFKRGDYHKAVAFYKRSC--NLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGC 91
+ T+ GD ++ VA+YK++ N +LG Y G A+ +Y
Sbjct: 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY----GEMLKFDMAIVFYELAF 327
Query: 92 NLRNHLA--CASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGV--SCGSLGFMYFNGTG 147
+ H A C +LG +Y+D D NL KA+ Y+ +K S +LG +Y
Sbjct: 328 HFNPHCAEACNNLGVIYKDRD----NLDKAVECYQMALTIKPNFSQSLNNLGVVY--TVQ 381
Query: 148 VKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGV 184
K + A ++ + Y + N +G +YR+A +
Sbjct: 382 GKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGNI 418
>emb|CAC85168.1| (AJ312093) SPY protein [Lycopersicon esculentum]
emb|CAC85169.1| (AJ312094) SPY protein [Lycopersicon esculentum]
Length = 931
Score = 42.4 bits (98), Expect = 0.007
Identities = 40/157 (25%), Positives = 68/157 (42%), Gaps = 16/157 (10%)
Query: 34 MATQAFKRGDYHKAVAFYKRSC--NLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGC 91
+ T+ GD ++ VA+YK++ N +LG Y G A+ +Y
Sbjct: 272 LGTKVKLEGDINQGVAYYKKALCYNWHYADAMYNLGVAY----GEMLKFDMAIVFYELAF 327
Query: 92 NLRNHLA--CASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGV--SCGSLGFMYFNGTG 147
+ H A C +LG +Y+D D NL KA+ Y+ +K S +LG +Y
Sbjct: 328 HFNPHCAEACNNLGVIYKDRD----NLDKAVECYQLALSIKPNFSQSLNNLGVVY--TVQ 381
Query: 148 VKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGV 184
K + A ++ + Y + N +G +YR+A +
Sbjct: 382 GKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGNI 418
>ref|NP_187761.1| (NM_111987) spindly (gibberellin signal transduction protein)
[Arabidopsis thaliana]
gb|AAC49446.1| (U62135) SPINDLY [Arabidopsis thaliana]
gb|AAG51433.1|AC008153_6 (AC008153) spindly (gibberellin signal transduction protein);
75377-80082 [Arabidopsis thaliana]
Length = 914
Score = 42.0 bits (97), Expect = 0.009
Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 16/157 (10%)
Query: 34 MATQAFKRGDYHKAVAFYKRSC--NLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGC 91
+ T+ GD + VA+YK++ N +LG Y G A+ +Y
Sbjct: 267 LGTKVKLEGDVTQGVAYYKKALYYNWHYADAMYNLGVAY----GEMLKFDMAIVFYELAF 322
Query: 92 NLRNHLA--CASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGV--SCGSLGFMYFNGTG 147
+ H A C +LG +Y+D D NL KA+ Y+ +K S +LG +Y
Sbjct: 323 HFNPHCAEACNNLGVLYKDRD----NLDKAVECYQMALSIKPNFAQSLNNLGVVY--TVQ 376
Query: 148 VKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGV 184
K + A ++ + Y + N +G +YR+A +
Sbjct: 377 GKMDAAASMIEKAILANPTYAEAFNNLGVLYRDAGNI 413
>ref|NP_106249.1| (NC_002678) unknown protein [Mesorhizobium loti]
dbj|BAB52035.1| (AP003007) unknown protein [Mesorhizobium loti]
Length = 1360
Score = 42.0 bits (97), Expect = 0.009
Identities = 23/105 (21%), Positives = 49/105 (45%)
Query: 174 VGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKK 233
+G Y ++GV++D+ A +++ L + +G YE G+ V ++ +++ Y+
Sbjct: 1103 IGSRYAESRGVKEDMAAAAKWYEKSAELGFAPAEYRIGNFYEKGIGVARDIKKSKTWYQL 1162
Query: 234 GCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYKKGCTLGFSGS 278
S HN+AV++ D + A ++++ LG S
Sbjct: 1163 AAEQGNASAMHNLAVLFAMAADGVTDNESAAHWFQEAADLGVKDS 1207
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.321 0.138 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,403,721
Number of Sequences: 1026957
Number of extensions: 9389532
Number of successful extensions: 18367
Number of sequences better than 1.0e-02: 99
Number of HSP's better than 0.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 17038
Number of HSP's gapped (non-prelim): 568
length of query: 306
length of database: 324,149,939
effective HSP length: 121
effective length of query: 185
effective length of database: 199,888,142
effective search space: 36979306270
effective search space used: 36979306270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 97 (42.0 bits)