BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646194|ref|NP_208378.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(155 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208378.1| (NC_000915) conserved hypothetical protein... 315 8e-86
sp|O26106|YF87_HELPY Hypothetical protein HP1587 301 2e-81
ref|NP_224211.1| (NC_000921) putative [Helicobacter pylori ... 272 7e-73
ref|NP_208380.1| (NC_000915) conserved hypothetical protein... 197 4e-50
ref|NP_224212.1| (NC_000921) putative [Helicobacter pylori ... 185 1e-46
ref|NP_208379.1| (NC_000915) conserved hypothetical protein... 185 1e-46
ref|NP_285703.1| (NC_002655) putative oxidoreductase [Esche... 62 2e-09
ref|NP_414552.1| (NC_000913) putative oxidoreductase [Esche... 62 2e-09
pir||D56688 dnaK 5'-region hypothetical protein 2 - Escheri... 62 2e-09
ref|NP_454620.1| (NC_003198) conserved hypothetical protein... 54 4e-07
>ref|NP_208378.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||C64718 conserved hypothetical protein HP1587 - Helicobacter pylori
(strain 26695)
gb|AAD08626.1| (AE000656) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 155
Score = 315 bits (808), Expect = 8e-86
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MNEDLTNSTEYKRYGHDYAKYPRRIAEELQHYGGNSFANFFRDEGVLYKEILCDACDHLK 60
MNEDLTNSTEYKRYGHDYAKYPRRIAEELQHYGGNSFANFFRDEGVLYKEILCDACDHLK
Sbjct: 1 MNEDLTNSTEYKRYGHDYAKYPRRIAEELQHYGGNSFANFFRDEGVLYKEILCDACDHLK 60
Query: 61 VNYNEESATSLIEQNMLSKLLKDSLEKMSRREIKELCNELGMTNIDKVIGENKQVLIAST 120
VNYNEESATSLIEQNMLSKLLKDSLEKMSRREIKELCNELGMTNIDKVIGENKQVLIAST
Sbjct: 61 VNYNEESATSLIEQNMLSKLLKDSLEKMSRREIKELCNELGMTNIDKVIGENKQVLIAST 120
Query: 121 LTLFKAGGSHSYALAVSVADAMVRQTLGHVMWWVK 155
LTLFKAGGSHSYALAVSVADAMVRQTLGHVMWWVK
Sbjct: 121 LTLFKAGGSHSYALAVSVADAMVRQTLGHVMWWVK 155
>sp|O26106|YF87_HELPY Hypothetical protein HP1587
Length = 209
Score = 301 bits (770), Expect = 2e-81
Identities = 150/154 (97%), Positives = 151/154 (97%)
Query: 1 MNEDLTNSTEYKRYGHDYAKYPRRIAEELQHYGGNSFANFFRDEGVLYKEILCDACDHLK 60
MNEDLTNSTEYKRYGHDYAKYPRRIAEELQHYGGNSFANFFRDEGVLYKEILCDACDHLK
Sbjct: 1 MNEDLTNSTEYKRYGHDYAKYPRRIAEELQHYGGNSFANFFRDEGVLYKEILCDACDHLK 60
Query: 61 VNYNEESATSLIEQNMLSKLLKDSLEKMSRREIKELCNELGMTNIDKVIGENKQVLIAST 120
VNYNEESATSLIEQNMLSKLLKDSLEKMSRREIKELCNELGMTNIDKVIGENKQVLIAST
Sbjct: 61 VNYNEESATSLIEQNMLSKLLKDSLEKMSRREIKELCNELGMTNIDKVIGENKQVLIAST 120
Query: 121 LTLFKAGGSHSYALAVSVADAMVRQTLGHVMWWV 154
LTLFKAGGSHSYALAVSVADAMVRQTLGH +V
Sbjct: 121 LTLFKAGGSHSYALAVSVADAMVRQTLGHXACYV 154
>ref|NP_224211.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZJ25|YF87_HELPJ Hypothetical protein JHP1493
pir||A71800 hypothetical protein jhp1493 - Helicobacter pylori (strain J99)
gb|AAD07072.1| (AE001571) putative [Helicobacter pylori J99]
Length = 209
Score = 272 bits (696), Expect = 7e-73
Identities = 135/149 (90%), Positives = 141/149 (94%)
Query: 1 MNEDLTNSTEYKRYGHDYAKYPRRIAEELQHYGGNSFANFFRDEGVLYKEILCDACDHLK 60
MNE+LT+ TEY+RYGHDYAKYPRRIAEELQ YGGNSFANFFRDEGVLYKEILCDACDHL
Sbjct: 1 MNEELTSLTEYQRYGHDYAKYPRRIAEELQRYGGNSFANFFRDEGVLYKEILCDACDHLD 60
Query: 61 VNYNEESATSLIEQNMLSKLLKDSLEKMSRREIKELCNELGMTNIDKVIGENKQVLIAST 120
+NYNE SATSLIEQNMLSKLLKDSLEKMS REIKELC+ LGM NIDKVIGENKQVLIAS
Sbjct: 61 INYNERSATSLIEQNMLSKLLKDSLEKMSGREIKELCDGLGMPNIDKVIGENKQVLIASV 120
Query: 121 LTLFKAGGSHSYALAVSVADAMVRQTLGH 149
LTLFKAGGSHSYALAV+VADAMVRQTLGH
Sbjct: 121 LTLFKAGGSHSYALAVAVADAMVRQTLGH 149
>ref|NP_208380.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||E64718 conserved hypothetical protein HP1589 - Helicobacter pylori
(strain 26695)
Length = 207
Score = 197 bits (500), Expect = 4e-50
Identities = 96/140 (68%), Positives = 118/140 (83%), Gaps = 3/140 (2%)
Query: 5 LTNSTEYKRYGHDYAKYPRRIAEELQHYGGNSFANFFRDEGVLYKEILCDACDHLKVNYN 64
+T+STEY+RYG+DYAKYPRRIAEELQ YGGNSF NFFRDEGVLYKEILCDACDHLKVNYN
Sbjct: 1 MTSSTEYQRYGYDYAKYPRRIAEELQRYGGNSFMNFFRDEGVLYKEILCDACDHLKVNYN 60
Query: 65 EESATSLIEQNMLSKLLKDSLEKMSRREIKELCNELGMTNIDKVIGENKQVLIASTLTLF 124
++S T+LIE+NMLS +L+ SLEKMS EI+ELC+ELG+ N +K+ KQ L + LTLF
Sbjct: 61 KKSDTTLIEENMLSSILQKSLEKMSDEEIRELCDELGVKNTNKL---GKQALSTAALTLF 117
Query: 125 KAGGSHSYALAVSVADAMVR 144
+ GG SY LA+ VA+A+++
Sbjct: 118 RMGGFKSYQLALIVANAVIK 137
>ref|NP_224212.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZJ24|YF88_HELPJ Hypothetical protein JHP1494
pir||B71800 hypothetical protein jhp1494 - Helicobacter pylori (strain J99)
gb|AAD07073.1| (AE001571) putative [Helicobacter pylori J99]
Length = 253
Score = 185 bits (470), Expect = 1e-46
Identities = 93/147 (63%), Positives = 115/147 (77%), Gaps = 3/147 (2%)
Query: 2 NEDLTNSTEYKRYGHDYAKYPRRIAEELQHYGGNSFANFFRDEGVLYKEILCDACDHLKV 61
NE LT+S EYKR+G DYAKY RIAEELQ+YG NSFA+F + EGVLYKEILCD CD LKV
Sbjct: 38 NEKLTSSIEYKRHGDDYAKYAERIAEELQYYGSNSFASFIKGEGVLYKEILCDVCDKLKV 97
Query: 62 NYNEESATSLIEQNMLSKLLKDSLEKMSRREIKELCNELGMTNIDKVIGENKQVLIASTL 121
NYN+++ T+LIEQNMLSK+L+ SLE+M E+KE+C+EL + N D + N+Q L A+TL
Sbjct: 98 NYNKKTETTLIEQNMLSKILERSLEEMDDEEVKEMCDELSIKNTDNL---NRQALSAATL 154
Query: 122 TLFKAGGSHSYALAVSVADAMVRQTLG 148
TLFK GG SY LAV VA+A+ + LG
Sbjct: 155 TLFKMGGFKSYQLAVIVANAVAKTILG 181
>ref|NP_208379.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
sp|O26107|YF88_HELPY Hypothetical protein HP1588
pir||D64718 conserved hypothetical protein HP1588 - Helicobacter pylori
(strain 26695)
gb|AAD08627.1| (AE000656) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 253
Score = 185 bits (470), Expect = 1e-46
Identities = 93/147 (63%), Positives = 115/147 (77%), Gaps = 3/147 (2%)
Query: 2 NEDLTNSTEYKRYGHDYAKYPRRIAEELQHYGGNSFANFFRDEGVLYKEILCDACDHLKV 61
NE LT+S EYKR+G DYAKY RIAEELQ+YG NSFA+F + EGVLYKEILCD CD LKV
Sbjct: 38 NEKLTSSIEYKRHGDDYAKYAERIAEELQYYGSNSFASFIKGEGVLYKEILCDVCDKLKV 97
Query: 62 NYNEESATSLIEQNMLSKLLKDSLEKMSRREIKELCNELGMTNIDKVIGENKQVLIASTL 121
NYN+++ T+LIEQNMLSK+L+ SLE+M E+KE+C+EL + N D + N+Q L A+TL
Sbjct: 98 NYNKKTETTLIEQNMLSKILERSLEEMDDEEVKEMCDELSIKNTDNL---NRQALSAATL 154
Query: 122 TLFKAGGSHSYALAVSVADAMVRQTLG 148
TLFK GG SY LAV VA+A+ + LG
Sbjct: 155 TLFKMGGFKSYQLAVIVANAVAKTILG 181
>ref|NP_285703.1| (NC_002655) putative oxidoreductase [Escherichia coli O157:H7
EDL933]
ref|NP_308038.1| (NC_002695) putative oxidoreductase [Escherichia coli O157:H7]
sp|P58316|YAAW_ECO57 Hypothetical protein yaaW
gb|AAG54311.1|AE005178_1 (AE005178) putative oxidoreductase [Escherichia coli O157:H7
EDL933]
dbj|BAB33434.1| (AP002550) putative oxidoreductase [Escherichia coli O157:H7]
Length = 237
Score = 62.0 bits (149), Expect = 2e-09
Identities = 38/109 (34%), Positives = 58/109 (52%), Gaps = 11/109 (10%)
Query: 25 IAEELQHYGGNSFANFFRDEGVLYKEILCDACDHLKVNYNEESATSLIEQNMLSKLLKDS 84
IA ELQH+GG+S AN R G LY+ IL D LK+ ++E +T IEQ +L + L+++
Sbjct: 66 IAGELQHFGGDSIANKLRGHGKLYRAILLDVSKRLKLKADKEMSTFEIEQQLLEQFLRNT 125
Query: 85 LEKMSRR-----------EIKELCNELGMTNIDKVIGENKQVLIASTLT 122
+KM + EL L + DK++ + L++S LT
Sbjct: 126 WKKMDEEHKQEFLHAVDARVNELEELLPLLMKDKLLAKGVSHLLSSQLT 174
>ref|NP_414552.1| (NC_000913) putative oxidoreductase [Escherichia coli K12]
sp|P75617|YAAW_ECOLI Hypothetical protein yaaW
pir||C64721 hypothetical protein b0011 - Escherichia coli (strain K-12)
gb|AAC73122.1| (AE000112) putative oxidoreductase [Escherichia coli K12]
Length = 237
Score = 62.0 bits (149), Expect = 2e-09
Identities = 38/109 (34%), Positives = 58/109 (52%), Gaps = 11/109 (10%)
Query: 25 IAEELQHYGGNSFANFFRDEGVLYKEILCDACDHLKVNYNEESATSLIEQNMLSKLLKDS 84
IA ELQH+GG+S AN R G LY+ IL D LK+ ++E +T IEQ +L + L+++
Sbjct: 66 IAGELQHFGGDSIANKLRGHGKLYRAILLDVSKRLKLKADKEMSTFEIEQQLLEQFLRNT 125
Query: 85 LEKMSRR-----------EIKELCNELGMTNIDKVIGENKQVLIASTLT 122
+KM + EL L + DK++ + L++S LT
Sbjct: 126 WKKMDEEHKQEFLHAVDARVNELEELLPLLMKDKLLAKGVSHLLSSQLT 174
>pir||D56688 dnaK 5'-region hypothetical protein 2 - Escherichia coli
emb|CAA47934.1| (X67700) ORF4 [Escherichia coli]
Length = 237
Score = 62.0 bits (149), Expect = 2e-09
Identities = 38/109 (34%), Positives = 58/109 (52%), Gaps = 11/109 (10%)
Query: 25 IAEELQHYGGNSFANFFRDEGVLYKEILCDACDHLKVNYNEESATSLIEQNMLSKLLKDS 84
IA ELQH+GG+S AN R G LY+ IL D LK+ ++E +T IEQ +L + L+++
Sbjct: 66 IAGELQHFGGDSIANKLRGHGKLYRAILLDVSKRLKLKADKEMSTFEIEQQLLEQFLRNT 125
Query: 85 LEKMSRR-----------EIKELCNELGMTNIDKVIGENKQVLIASTLT 122
+KM + EL L + DK++ + L++S LT
Sbjct: 126 WKKMDEEHKQEFLHAVDARVNELEELLPLLMKDKLLAKGVSHLLSSQLT 174
>ref|NP_454620.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
ref|NP_459015.1| (NC_003197) positive regulator for sigma H (sigma 32) promoters,
permitting growth at high temperature [Salmonella
typhimurium LT2]
gb|AAL18974.1| (AE008693) positive regulator for sigma H (sigma 32) promoters,
permitting growth at high temperature [Salmonella
typhimurium LT2]
emb|CAD01163.1| (AL627265) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 237
Score = 54.3 bits (129), Expect = 4e-07
Identities = 31/92 (33%), Positives = 48/92 (51%), Gaps = 5/92 (5%)
Query: 25 IAEELQHYGGNSFANFFRDEGVLYKEILCDACDHLKVNYNEESATSLIEQNMLSKLLKDS 84
IA E QHYGG+S AN R G Y+ IL D LK+ ++ +T IEQ +L L+ +
Sbjct: 66 IAGEFQHYGGDSIANKLRGHGKQYRAILLDVAKRLKLKADKSMSTFEIEQQLLEHFLRHT 125
Query: 85 LEKMSRREIKELCNELGMTNIDKVIGENKQVL 116
+KM +E + +D + E +++L
Sbjct: 126 WQKMDAAHKQEF-----LQAVDAKVSELEELL 152
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.317 0.132 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,769,674
Number of Sequences: 1026957
Number of extensions: 3425385
Number of successful extensions: 11411
Number of sequences better than 1.0e-02: 10
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11398
Number of HSP's gapped (non-prelim): 10
length of query: 155
length of database: 324,149,939
effective HSP length: 111
effective length of query: 44
effective length of database: 210,157,712
effective search space: 9246939328
effective search space used: 9246939328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 92 (40.0 bits)