BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646195|ref|NP_208379.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(253 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208379.1| (NC_000915) conserved hypothetical protein... 497 e-140
ref|NP_224212.1| (NC_000921) putative [Helicobacter pylori ... 493 e-139
ref|NP_208380.1| (NC_000915) conserved hypothetical protein... 306 2e-82
sp|O26106|YF87_HELPY Hypothetical protein HP1587 248 4e-65
ref|NP_224211.1| (NC_000921) putative [Helicobacter pylori ... 245 3e-64
ref|NP_208378.1| (NC_000915) conserved hypothetical protein... 185 4e-46
ref|NP_454620.1| (NC_003198) conserved hypothetical protein... 101 9e-21
ref|NP_414552.1| (NC_000913) putative oxidoreductase [Esche... 100 2e-20
ref|NP_285703.1| (NC_002655) putative oxidoreductase [Esche... 99 3e-20
pir||D56688 dnaK 5'-region hypothetical protein 2 - Escheri... 99 4e-20
ref|NP_208381.1| (NC_000915) hypothetical protein [Helicoba... 56 4e-07
>ref|NP_208379.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
sp|O26107|YF88_HELPY Hypothetical protein HP1588
pir||D64718 conserved hypothetical protein HP1588 - Helicobacter pylori
(strain 26695)
gb|AAD08627.1| (AE000656) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 253
Score = 497 bits (1279), Expect = e-140
Identities = 253/253 (100%), Positives = 253/253 (100%)
Query: 1 MAYKYDRDLEFLKQLESSDLLDLFEVLVFGKDGEKRHNEKLTSSIEYKRHGDDYAKYAER 60
MAYKYDRDLEFLKQLESSDLLDLFEVLVFGKDGEKRHNEKLTSSIEYKRHGDDYAKYAER
Sbjct: 1 MAYKYDRDLEFLKQLESSDLLDLFEVLVFGKDGEKRHNEKLTSSIEYKRHGDDYAKYAER 60
Query: 61 IAEELQYYGSNSFASFIKGEGVLYKEILCDVCDKLKVNYNKKTETTLIEQNMLSKILERS 120
IAEELQYYGSNSFASFIKGEGVLYKEILCDVCDKLKVNYNKKTETTLIEQNMLSKILERS
Sbjct: 61 IAEELQYYGSNSFASFIKGEGVLYKEILCDVCDKLKVNYNKKTETTLIEQNMLSKILERS 120
Query: 121 LEEMDDEEVKEMCDELSIKNTDNLNRQALSAATLTLFKMGGFKSYQLAVIVANAVAKTIL 180
LEEMDDEEVKEMCDELSIKNTDNLNRQALSAATLTLFKMGGFKSYQLAVIVANAVAKTIL
Sbjct: 121 LEEMDDEEVKEMCDELSIKNTDNLNRQALSAATLTLFKMGGFKSYQLAVIVANAVAKTIL 180
Query: 181 GRGLSLAGNQVLTRTLSFLTGPVGWIITGVWTAIDIAGPAYRVTIPACIVVATLRLKTQQ 240
GRGLSLAGNQVLTRTLSFLTGPVGWIITGVWTAIDIAGPAYRVTIPACIVVATLRLKTQQ
Sbjct: 181 GRGLSLAGNQVLTRTLSFLTGPVGWIITGVWTAIDIAGPAYRVTIPACIVVATLRLKTQQ 240
Query: 241 ANGDKKSLQIESI 253
ANGDKKSLQIESI
Sbjct: 241 ANGDKKSLQIESI 253
>ref|NP_224212.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZJ24|YF88_HELPJ Hypothetical protein JHP1494
pir||B71800 hypothetical protein jhp1494 - Helicobacter pylori (strain J99)
gb|AAD07073.1| (AE001571) putative [Helicobacter pylori J99]
Length = 253
Score = 493 bits (1270), Expect = e-139
Identities = 251/253 (99%), Positives = 252/253 (99%)
Query: 1 MAYKYDRDLEFLKQLESSDLLDLFEVLVFGKDGEKRHNEKLTSSIEYKRHGDDYAKYAER 60
MAYKYDRDLEFLKQLESSDLLDLFEVLVFGKDGEKRHNEKLTSSIEYKRHGDDYAKYAER
Sbjct: 1 MAYKYDRDLEFLKQLESSDLLDLFEVLVFGKDGEKRHNEKLTSSIEYKRHGDDYAKYAER 60
Query: 61 IAEELQYYGSNSFASFIKGEGVLYKEILCDVCDKLKVNYNKKTETTLIEQNMLSKILERS 120
IAEELQYYGSNSFASFIKGEGVLYKEILCDVCDKLKVNYNKKTETTLIEQNMLSKILERS
Sbjct: 61 IAEELQYYGSNSFASFIKGEGVLYKEILCDVCDKLKVNYNKKTETTLIEQNMLSKILERS 120
Query: 121 LEEMDDEEVKEMCDELSIKNTDNLNRQALSAATLTLFKMGGFKSYQLAVIVANAVAKTIL 180
LEEMDDEEVKEMCDELSIKNTDNLNRQALSAATLTLFKMGGFKSYQLAVIVANAVAKTIL
Sbjct: 121 LEEMDDEEVKEMCDELSIKNTDNLNRQALSAATLTLFKMGGFKSYQLAVIVANAVAKTIL 180
Query: 181 GRGLSLAGNQVLTRTLSFLTGPVGWIITGVWTAIDIAGPAYRVTIPACIVVATLRLKTQQ 240
GRGLSLAGNQVLTRTLSFLTGPVGWIITGVWTAIDIAGPAYRVTIPACIVVATLRLKTQQ
Sbjct: 181 GRGLSLAGNQVLTRTLSFLTGPVGWIITGVWTAIDIAGPAYRVTIPACIVVATLRLKTQQ 240
Query: 241 ANGDKKSLQIESI 253
AN DKKSLQIES+
Sbjct: 241 ANEDKKSLQIESV 253
>ref|NP_208380.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||E64718 conserved hypothetical protein HP1589 - Helicobacter pylori
(strain 26695)
Length = 207
Score = 306 bits (783), Expect = 2e-82
Identities = 149/199 (74%), Positives = 170/199 (84%)
Query: 41 LTSSIEYKRHGDDYAKYAERIAEELQYYGSNSFASFIKGEGVLYKEILCDVCDKLKVNYN 100
+TSS EY+R+G DYAKY RIAEELQ YG NSF +F + EGVLYKEILCD CD LKVNYN
Sbjct: 1 MTSSTEYQRYGYDYAKYPRRIAEELQRYGGNSFMNFFRDEGVLYKEILCDACDHLKVNYN 60
Query: 101 KKTETTLIEQNMLSKILERSLEEMDDEEVKEMCDELSIKNTDNLNRQALSAATLTLFKMG 160
KK++TTLIE+NMLS IL++SLE+M DEE++E+CDEL +KNT+ L +QALS A LTLF+MG
Sbjct: 61 KKSDTTLIEENMLSSILQKSLEKMSDEEIRELCDELGVKNTNKLGKQALSTAALTLFRMG 120
Query: 161 GFKSYQLAVIVANAVAKTILGRGLSLAGNQVLTRTLSFLTGPVGWIITGVWTAIDIAGPA 220
GFKSYQLA+IVANAV K I RGLSL N LTR LS LTGP+GWIITGVWTAIDIAGPA
Sbjct: 121 GFKSYQLALIVANAVIKAIFQRGLSLGANAALTRGLSILTGPIGWIITGVWTAIDIAGPA 180
Query: 221 YRVTIPACIVVATLRLKTQ 239
YRVTIPACI+VATLRLK Q
Sbjct: 181 YRVTIPACILVATLRLKAQ 199
>sp|O26106|YF87_HELPY Hypothetical protein HP1587
Length = 209
Score = 248 bits (633), Expect = 4e-65
Identities = 123/204 (60%), Positives = 156/204 (76%), Gaps = 4/204 (1%)
Query: 38 NEKLTSSIEYKRHGDDYAKYAERIAEELQYYGSNSFASFIKGEGVLYKEILCDVCDKLKV 97
NE LT+S EYKR+G DYAKY RIAEELQ+YG NSFA+F + EGVLYKEILCD CD LKV
Sbjct: 2 NEDLTNSTEYKRYGHDYAKYPRRIAEELQHYGGNSFANFFRDEGVLYKEILCDACDHLKV 61
Query: 98 NYNKKTETTLIEQNMLSKILERSLEEMDDEEVKEMCDELSIKNTDNL---NRQALSAATL 154
NYN+++ T+LIEQNMLSK+L+ SLE+M E+KE+C+EL + N D + N+Q L A+TL
Sbjct: 62 NYNEESATSLIEQNMLSKLLKDSLEKMSRREIKELCNELGMTNIDKVIGENKQVLIASTL 121
Query: 155 TLFKMGGFKSYQLAVIVANAVAKTILGR-GLSLAGNQVLTRTLSFLTGPVGWIITGVWTA 213
TLFK GG SY LAV VA+A+ + LG + G L +TL L GP+GW+ITG +
Sbjct: 122 TLFKAGGSHSYALAVSVADAMVRQTLGHXACYVVGKVALKKTLGVLAGPIGWVITGALVS 181
Query: 214 IDIAGPAYRVTIPACIVVATLRLK 237
I++AGPAYRVT+PAC+++ATLRLK
Sbjct: 182 INLAGPAYRVTVPACVLIATLRLK 205
>ref|NP_224211.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZJ25|YF87_HELPJ Hypothetical protein JHP1493
pir||A71800 hypothetical protein jhp1493 - Helicobacter pylori (strain J99)
gb|AAD07072.1| (AE001571) putative [Helicobacter pylori J99]
Length = 209
Score = 245 bits (626), Expect = 3e-64
Identities = 122/204 (59%), Positives = 154/204 (74%), Gaps = 4/204 (1%)
Query: 38 NEKLTSSIEYKRHGDDYAKYAERIAEELQYYGSNSFASFIKGEGVLYKEILCDVCDKLKV 97
NE+LTS EY+R+G DYAKY RIAEELQ YG NSFA+F + EGVLYKEILCD CD L +
Sbjct: 2 NEELTSLTEYQRYGHDYAKYPRRIAEELQRYGGNSFANFFRDEGVLYKEILCDACDHLDI 61
Query: 98 NYNKKTETTLIEQNMLSKILERSLEEMDDEEVKEMCDELSIKNTDNL---NRQALSAATL 154
NYN+++ T+LIEQNMLSK+L+ SLE+M E+KE+CD L + N D + N+Q L A+ L
Sbjct: 62 NYNERSATSLIEQNMLSKLLKDSLEKMSGREIKELCDGLGMPNIDKVIGENKQVLIASVL 121
Query: 155 TLFKMGGFKSYQLAVIVANAVAKTILGRGL-SLAGNQVLTRTLSFLTGPVGWIITGVWTA 213
TLFK GG SY LAV VA+A+ + LG GL S+ G L +TL L GP+GW+ITG +
Sbjct: 122 TLFKAGGSHSYALAVAVADAMVRQTLGHGLSSVVGKVALKKTLDILAGPIGWVITGALVS 181
Query: 214 IDIAGPAYRVTIPACIVVATLRLK 237
I++AGPAYRVT+PAC++VATLR K
Sbjct: 182 INLAGPAYRVTVPACVLVATLRKK 205
>ref|NP_208378.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||C64718 conserved hypothetical protein HP1587 - Helicobacter pylori
(strain 26695)
gb|AAD08626.1| (AE000656) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 155
Score = 185 bits (470), Expect = 4e-46
Identities = 93/147 (63%), Positives = 115/147 (77%), Gaps = 3/147 (2%)
Query: 38 NEKLTSSIEYKRHGDDYAKYAERIAEELQYYGSNSFASFIKGEGVLYKEILCDVCDKLKV 97
NE LT+S EYKR+G DYAKY RIAEELQ+YG NSFA+F + EGVLYKEILCD CD LKV
Sbjct: 2 NEDLTNSTEYKRYGHDYAKYPRRIAEELQHYGGNSFANFFRDEGVLYKEILCDACDHLKV 61
Query: 98 NYNKKTETTLIEQNMLSKILERSLEEMDDEEVKEMCDELSIKNTDNL---NRQALSAATL 154
NYN+++ T+LIEQNMLSK+L+ SLE+M E+KE+C+EL + N D + N+Q L A+TL
Sbjct: 62 NYNEESATSLIEQNMLSKLLKDSLEKMSRREIKELCNELGMTNIDKVIGENKQVLIASTL 121
Query: 155 TLFKMGGFKSYQLAVIVANAVAKTILG 181
TLFK GG SY LAV VA+A+ + LG
Sbjct: 122 TLFKAGGSHSYALAVSVADAMVRQTLG 148
>ref|NP_454620.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
ref|NP_459015.1| (NC_003197) positive regulator for sigma H (sigma 32) promoters,
permitting growth at high temperature [Salmonella
typhimurium LT2]
gb|AAL18974.1| (AE008693) positive regulator for sigma H (sigma 32) promoters,
permitting growth at high temperature [Salmonella
typhimurium LT2]
emb|CAD01163.1| (AL627265) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 237
Score = 101 bits (251), Expect = 9e-21
Identities = 76/239 (31%), Positives = 118/239 (48%), Gaps = 16/239 (6%)
Query: 1 MAYKYDRDLEFLKQLESSDLLDLFEVLVFGKDGEKRHNEKLTSSIEYKR---HGDDYAKY 57
+ Y +D DL+FL+ L D +L + G+ R + L+ + +K H + + +
Sbjct: 3 VTYLHDEDLDFLQHCSEEQLADFARLLTHNEKGKARLSSVLSHNELFKAMEGHPEQHRRN 62
Query: 58 AERIAEELQYYGSNSFASFIKGEGVLYKEILCDVCDKLKVNYNKKTETTLIEQNMLSKIL 117
+ IA E Q+YG +S A+ ++G G Y+ IL DV +LK+ +K T IEQ +L L
Sbjct: 63 WQLIAGEFQHYGGDSIANKLRGHGKQYRAILLDVAKRLKLKADKSMSTFEIEQQLLEHFL 122
Query: 118 ERSLEEMDDEEVKEMCDELSIKNTDNLNRQALSAATLTLFK-MGGFKSYQLAVIVANAVA 176
+ ++MD +E + K ++ L +L K + S QL I+ A
Sbjct: 123 RHTWQKMDAAHKQEFLQAVDAKVSELEELLPLLMKDRSLAKGVSHLLSTQLTRILRTHAA 182
Query: 177 KTILGRGLSLAGNQVLTRTLSFLTGPVGWIITGVWTAIDIAGPAYRVTIPACIVVATLR 235
+ILG GL L G + L GPVG + GV ++G AYRVTIPA + +A LR
Sbjct: 183 MSILGHGL-LRG--------AGLGGPVGAALNGVKA---MSGSAYRVTIPAVLQIACLR 229
>ref|NP_414552.1| (NC_000913) putative oxidoreductase [Escherichia coli K12]
sp|P75617|YAAW_ECOLI Hypothetical protein yaaW
pir||C64721 hypothetical protein b0011 - Escherichia coli (strain K-12)
gb|AAC73122.1| (AE000112) putative oxidoreductase [Escherichia coli K12]
Length = 237
Score = 100 bits (249), Expect = 2e-20
Identities = 75/237 (31%), Positives = 119/237 (49%), Gaps = 16/237 (6%)
Query: 3 YKYDRDLEFLKQLESSDLLDLFEVLVFGKDGEKRHNEKLTSSIEYKR---HGDDYAKYAE 59
Y D DL+FL+ L + +L + G+ R + L + +K H + + + +
Sbjct: 5 YLNDSDLDFLQHCSEEQLANFARLLTHNEKGKTRLSSVLMRNELFKSMEGHPEQHRRNWQ 64
Query: 60 RIAEELQYYGSNSFASFIKGEGVLYKEILCDVCDKLKVNYNKKTETTLIEQNMLSKILER 119
IA ELQ++G +S A+ ++G G LY+ IL DV +LK+ +K+ T IEQ +L + L
Sbjct: 65 LIAGELQHFGGDSIANKLRGHGKLYRAILLDVSKRLKLKADKEMSTFEIEQQLLEQFLRN 124
Query: 120 SLEEMDDEEVKEMCDELSIKNTDNLNRQALSAATLTLFK-MGGFKSYQLAVIVANAVAKT 178
+ ++MD+E +E + + + L L K + S QL I+ A +
Sbjct: 125 TWKKMDEEHKQEFLHAVDARVNELEELLPLLMKDKLLAKGVSHLLSSQLTRILRTHAAMS 184
Query: 179 ILGRGLSLAGNQVLTRTLSFLTGPVGWIITGVWTAIDIAGPAYRVTIPACIVVATLR 235
+LG GL L G + L GPVG + GV ++G AYRVTIPA + +A LR
Sbjct: 185 VLGHGL-LRG--------AGLGGPVGAALNGVKA---VSGSAYRVTIPAVLQIACLR 229
>ref|NP_285703.1| (NC_002655) putative oxidoreductase [Escherichia coli O157:H7
EDL933]
ref|NP_308038.1| (NC_002695) putative oxidoreductase [Escherichia coli O157:H7]
sp|P58316|YAAW_ECO57 Hypothetical protein yaaW
gb|AAG54311.1|AE005178_1 (AE005178) putative oxidoreductase [Escherichia coli O157:H7
EDL933]
dbj|BAB33434.1| (AP002550) putative oxidoreductase [Escherichia coli O157:H7]
Length = 237
Score = 99.4 bits (246), Expect = 3e-20
Identities = 74/237 (31%), Positives = 119/237 (49%), Gaps = 16/237 (6%)
Query: 3 YKYDRDLEFLKQLESSDLLDLFEVLVFGKDGEKRHNEKLTSSIEYKR---HGDDYAKYAE 59
Y D DL+FL+ L + +L + G+ R + L + +K H + + + +
Sbjct: 5 YLNDSDLDFLQHCSEEQLANFARLLTHNEKGKTRLSSVLMRNELFKSMEGHPEQHRRNWQ 64
Query: 60 RIAEELQYYGSNSFASFIKGEGVLYKEILCDVCDKLKVNYNKKTETTLIEQNMLSKILER 119
IA ELQ++G +S A+ ++G G LY+ IL DV +LK+ +K+ T IEQ +L + L
Sbjct: 65 LIAGELQHFGGDSIANKLRGHGKLYRAILLDVSKRLKLKADKEMSTFEIEQQLLEQFLRN 124
Query: 120 SLEEMDDEEVKEMCDELSIKNTDNLNRQALSAATLTLFK-MGGFKSYQLAVIVANAVAKT 178
+ ++MD+E +E + + + L L K + S QL I+ A +
Sbjct: 125 TWKKMDEEHKQEFLHAVDARVNELEELLPLLMKDKLLAKGVSHLLSSQLTRILRTHAAMS 184
Query: 179 ILGRGLSLAGNQVLTRTLSFLTGPVGWIITGVWTAIDIAGPAYRVTIPACIVVATLR 235
+LG GL L G + L GPVG + GV ++G +YRVTIPA + +A LR
Sbjct: 185 VLGHGL-LRG--------AGLGGPVGAALNGVKA---VSGSSYRVTIPAVLQIACLR 229
>pir||D56688 dnaK 5'-region hypothetical protein 2 - Escherichia coli
emb|CAA47934.1| (X67700) ORF4 [Escherichia coli]
Length = 237
Score = 99.0 bits (245), Expect = 4e-20
Identities = 74/237 (31%), Positives = 118/237 (49%), Gaps = 16/237 (6%)
Query: 3 YKYDRDLEFLKQLESSDLLDLFEVLVFGKDGEKRHNEKLTSSIEYKR---HGDDYAKYAE 59
Y D DL+FL+ L + +L + G+ R + L + +K H + + + +
Sbjct: 5 YLNDSDLDFLQHCSEEQLANFARLLTHNEKGKTRLSSVLMRNELFKSMEGHPEQHRRNWQ 64
Query: 60 RIAEELQYYGSNSFASFIKGEGVLYKEILCDVCDKLKVNYNKKTETTLIEQNMLSKILER 119
IA ELQ++G +S A+ ++G G LY+ IL DV +LK+ +K+ T IEQ +L + L
Sbjct: 65 LIAGELQHFGGDSIANKLRGHGKLYRAILLDVSKRLKLKADKEMSTFEIEQQLLEQFLRN 124
Query: 120 SLEEMDDEEVKEMCDELSIKNTDNLNRQALSAATLTLFK-MGGFKSYQLAVIVANAVAKT 178
+ ++MD+E +E + + + L L K + S QL I+ A +
Sbjct: 125 TWKKMDEEHKQEFLHAVDARVNELEELLPLLMKDKLLAKGVSHLLSSQLTRILRTHAAMS 184
Query: 179 ILGRGLSLAGNQVLTRTLSFLTGPVGWIITGVWTAIDIAGPAYRVTIPACIVVATLR 235
+LG G L G + L GPVG + GV ++G AYRVTIPA + +A LR
Sbjct: 185 VLGHGF-LRG--------AGLGGPVGAALNGVKA---VSGSAYRVTIPAVLQIACLR 229
>ref|NP_208381.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64718 hypothetical protein HP1590 - Helicobacter pylori (strain 26695)
gb|AAD08629.1| (AE000656) H. pylori predicted coding region HP1590 [Helicobacter
pylori 26695]
Length = 39
Score = 55.8 bits (133), Expect = 4e-07
Identities = 26/39 (66%), Positives = 31/39 (78%)
Query: 1 MAYKYDRDLEFLKQLESSDLLDLFEVLVFGKDGEKRHNE 39
MAY+YD DLEFLK+L SSDL DLF+ LV+ +DG R NE
Sbjct: 1 MAYRYDSDLEFLKRLSSSDLKDLFDALVYDEDGTLRMNE 39
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.317 0.134 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,078,860
Number of Sequences: 1026957
Number of extensions: 5760808
Number of successful extensions: 19555
Number of sequences better than 1.0e-02: 11
Number of HSP's better than 0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19531
Number of HSP's gapped (non-prelim): 11
length of query: 253
length of database: 324,149,939
effective HSP length: 118
effective length of query: 135
effective length of database: 202,969,013
effective search space: 27400816755
effective search space used: 27400816755
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 96 (41.6 bits)