BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646205|ref|NP_208380.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(207 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_208380.1| (NC_000915) conserved hypothetical protein... 409 e-113
ref|NP_224212.1| (NC_000921) putative [Helicobacter pylori ... 308 2e-83
ref|NP_208379.1| (NC_000915) conserved hypothetical protein... 306 1e-82
ref|NP_224211.1| (NC_000921) putative [Helicobacter pylori ... 264 5e-70
sp|O26106|YF87_HELPY Hypothetical protein HP1587 259 1e-68
ref|NP_208378.1| (NC_000915) conserved hypothetical protein... 197 8e-50
ref|NP_414552.1| (NC_000913) putative oxidoreductase [Esche... 80 2e-14
ref|NP_285703.1| (NC_002655) putative oxidoreductase [Esche... 79 4e-14
pir||D56688 dnaK 5'-region hypothetical protein 2 - Escheri... 78 5e-14
ref|NP_454620.1| (NC_003198) conserved hypothetical protein... 70 1e-11
>ref|NP_208380.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||E64718 conserved hypothetical protein HP1589 - Helicobacter pylori
(strain 26695)
Length = 207
Score = 409 bits (1051), Expect = e-113
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 1 MTSSTEYQRYGYDYAKYPRRIAEELQRYGGNSFMNFFRDEGVLYKEILCDACDHLKVNYN 60
MTSSTEYQRYGYDYAKYPRRIAEELQRYGGNSFMNFFRDEGVLYKEILCDACDHLKVNYN
Sbjct: 1 MTSSTEYQRYGYDYAKYPRRIAEELQRYGGNSFMNFFRDEGVLYKEILCDACDHLKVNYN 60
Query: 61 KKSDTTLIEENMLSSILQKSLEKMSDEEIRELCDELGVKNTNKLGKQALSTAALTLFRMG 120
KKSDTTLIEENMLSSILQKSLEKMSDEEIRELCDELGVKNTNKLGKQALSTAALTLFRMG
Sbjct: 61 KKSDTTLIEENMLSSILQKSLEKMSDEEIRELCDELGVKNTNKLGKQALSTAALTLFRMG 120
Query: 121 GFKSYQLALIVANAVIKAIFQRGLSLGANAALTRGLSILTGPIGWIITGVWTAIDIAGPA 180
GFKSYQLALIVANAVIKAIFQRGLSLGANAALTRGLSILTGPIGWIITGVWTAIDIAGPA
Sbjct: 121 GFKSYQLALIVANAVIKAIFQRGLSLGANAALTRGLSILTGPIGWIITGVWTAIDIAGPA 180
Query: 181 YRVTIPACILVATLRLKAQANEIKNIL 207
YRVTIPACILVATLRLKAQANEIKNIL
Sbjct: 181 YRVTIPACILVATLRLKAQANEIKNIL 207
>ref|NP_224212.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZJ24|YF88_HELPJ Hypothetical protein JHP1494
pir||B71800 hypothetical protein jhp1494 - Helicobacter pylori (strain J99)
gb|AAD07073.1| (AE001571) putative [Helicobacter pylori J99]
Length = 253
Score = 308 bits (790), Expect = 2e-83
Identities = 154/208 (74%), Positives = 175/208 (84%), Gaps = 1/208 (0%)
Query: 1 MTSSTEYQRYGYDYAKYPRRIAEELQRYGGNSFMNFFRDEGVLYKEILCDACDHLKVNYN 60
+TSS EY+R+G DYAKY RIAEELQ YG NSF +F + EGVLYKEILCD CD LKVNYN
Sbjct: 41 LTSSIEYKRHGDDYAKYAERIAEELQYYGSNSFASFIKGEGVLYKEILCDVCDKLKVNYN 100
Query: 61 KKSDTTLIEENMLSSILQKSLEKMSDEEIRELCDELGVKNTNKLGKQALSTAALTLFRMG 120
KK++TTLIE+NMLS IL++SLE+M DEE++E+CDEL +KNT+ L +QALS A LTLF+MG
Sbjct: 101 KKTETTLIEQNMLSKILERSLEEMDDEEVKEMCDELSIKNTDNLNRQALSAATLTLFKMG 160
Query: 121 GFKSYQLALIVANAVIKAIFQRGLSLGANAALTRGLSILTGPIGWIITGVWTAIDIAGPA 180
GFKSYQLA+IVANAV K I RGLSL N LTR LS LTGP+GWIITGVWTAIDIAGPA
Sbjct: 161 GFKSYQLAVIVANAVAKTILGRGLSLAGNQVLTRTLSFLTGPVGWIITGVWTAIDIAGPA 220
Query: 181 YRVTIPACILVATLRLKA-QANEIKNIL 207
YRVTIPACI+VATLRLK QANE K L
Sbjct: 221 YRVTIPACIVVATLRLKTQQANEDKKSL 248
>ref|NP_208379.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
sp|O26107|YF88_HELPY Hypothetical protein HP1588
pir||D64718 conserved hypothetical protein HP1588 - Helicobacter pylori
(strain 26695)
gb|AAD08627.1| (AE000656) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 253
Score = 306 bits (783), Expect = 1e-82
Identities = 149/199 (74%), Positives = 170/199 (84%)
Query: 1 MTSSTEYQRYGYDYAKYPRRIAEELQRYGGNSFMNFFRDEGVLYKEILCDACDHLKVNYN 60
+TSS EY+R+G DYAKY RIAEELQ YG NSF +F + EGVLYKEILCD CD LKVNYN
Sbjct: 41 LTSSIEYKRHGDDYAKYAERIAEELQYYGSNSFASFIKGEGVLYKEILCDVCDKLKVNYN 100
Query: 61 KKSDTTLIEENMLSSILQKSLEKMSDEEIRELCDELGVKNTNKLGKQALSTAALTLFRMG 120
KK++TTLIE+NMLS IL++SLE+M DEE++E+CDEL +KNT+ L +QALS A LTLF+MG
Sbjct: 101 KKTETTLIEQNMLSKILERSLEEMDDEEVKEMCDELSIKNTDNLNRQALSAATLTLFKMG 160
Query: 121 GFKSYQLALIVANAVIKAIFQRGLSLGANAALTRGLSILTGPIGWIITGVWTAIDIAGPA 180
GFKSYQLA+IVANAV K I RGLSL N LTR LS LTGP+GWIITGVWTAIDIAGPA
Sbjct: 161 GFKSYQLAVIVANAVAKTILGRGLSLAGNQVLTRTLSFLTGPVGWIITGVWTAIDIAGPA 220
Query: 181 YRVTIPACILVATLRLKAQ 199
YRVTIPACI+VATLRLK Q
Sbjct: 221 YRVTIPACIVVATLRLKTQ 239
>ref|NP_224211.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZJ25|YF87_HELPJ Hypothetical protein JHP1493
pir||A71800 hypothetical protein jhp1493 - Helicobacter pylori (strain J99)
gb|AAD07072.1| (AE001571) putative [Helicobacter pylori J99]
Length = 209
Score = 264 bits (674), Expect = 5e-70
Identities = 132/204 (64%), Positives = 161/204 (78%), Gaps = 4/204 (1%)
Query: 1 MTSSTEYQRYGYDYAKYPRRIAEELQRYGGNSFMNFFRDEGVLYKEILCDACDHLKVNYN 60
+TS TEYQRYG+DYAKYPRRIAEELQRYGGNSF NFFRDEGVLYKEILCDACDHL +NYN
Sbjct: 5 LTSLTEYQRYGHDYAKYPRRIAEELQRYGGNSFANFFRDEGVLYKEILCDACDHLDINYN 64
Query: 61 KKSDTTLIEENMLSSILQKSLEKMSDEEIRELCDELGVKNTNKL---GKQALSTAALTLF 117
++S T+LIE+NMLS +L+ SLEKMS EI+ELCD LG+ N +K+ KQ L + LTLF
Sbjct: 65 ERSATSLIEQNMLSKLLKDSLEKMSGREIKELCDGLGMPNIDKVIGENKQVLIASVLTLF 124
Query: 118 RMGGFKSYQLALIVANAVIKAIFQRGL-SLGANAALTRGLSILTGPIGWIITGVWTAIDI 176
+ GG SY LA+ VA+A+++ GL S+ AL + L IL GPIGW+ITG +I++
Sbjct: 125 KAGGSHSYALAVAVADAMVRQTLGHGLSSVVGKVALKKTLDILAGPIGWVITGALVSINL 184
Query: 177 AGPAYRVTIPACILVATLRLKAQA 200
AGPAYRVT+PAC+LVATLR K +A
Sbjct: 185 AGPAYRVTVPACVLVATLRKKLKA 208
>sp|O26106|YF87_HELPY Hypothetical protein HP1587
Length = 209
Score = 259 bits (663), Expect = 1e-68
Identities = 128/204 (62%), Positives = 162/204 (78%), Gaps = 4/204 (1%)
Query: 1 MTSSTEYQRYGYDYAKYPRRIAEELQRYGGNSFMNFFRDEGVLYKEILCDACDHLKVNYN 60
+T+STEY+RYG+DYAKYPRRIAEELQ YGGNSF NFFRDEGVLYKEILCDACDHLKVNYN
Sbjct: 5 LTNSTEYKRYGHDYAKYPRRIAEELQHYGGNSFANFFRDEGVLYKEILCDACDHLKVNYN 64
Query: 61 KKSDTTLIEENMLSSILQKSLEKMSDEEIRELCDELGVKNTNKL---GKQALSTAALTLF 117
++S T+LIE+NMLS +L+ SLEKMS EI+ELC+ELG+ N +K+ KQ L + LTLF
Sbjct: 65 EESATSLIEQNMLSKLLKDSLEKMSRREIKELCNELGMTNIDKVIGENKQVLIASTLTLF 124
Query: 118 RMGGFKSYQLALIVANAVIK-AIFQRGLSLGANAALTRGLSILTGPIGWIITGVWTAIDI 176
+ GG SY LA+ VA+A+++ + + AL + L +L GPIGW+ITG +I++
Sbjct: 125 KAGGSHSYALAVSVADAMVRQTLGHXACYVVGKVALKKTLGVLAGPIGWVITGALVSINL 184
Query: 177 AGPAYRVTIPACILVATLRLKAQA 200
AGPAYRVT+PAC+L+ATLRLK +A
Sbjct: 185 AGPAYRVTVPACVLIATLRLKLKA 208
>ref|NP_208378.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||C64718 conserved hypothetical protein HP1587 - Helicobacter pylori
(strain 26695)
gb|AAD08626.1| (AE000656) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 155
Score = 197 bits (500), Expect = 8e-50
Identities = 96/140 (68%), Positives = 118/140 (83%), Gaps = 3/140 (2%)
Query: 1 MTSSTEYQRYGYDYAKYPRRIAEELQRYGGNSFMNFFRDEGVLYKEILCDACDHLKVNYN 60
+T+STEY+RYG+DYAKYPRRIAEELQ YGGNSF NFFRDEGVLYKEILCDACDHLKVNYN
Sbjct: 5 LTNSTEYKRYGHDYAKYPRRIAEELQHYGGNSFANFFRDEGVLYKEILCDACDHLKVNYN 64
Query: 61 KKSDTTLIEENMLSSILQKSLEKMSDEEIRELCDELGVKNTNKL---GKQALSTAALTLF 117
++S T+LIE+NMLS +L+ SLEKMS EI+ELC+ELG+ N +K+ KQ L + LTLF
Sbjct: 65 EESATSLIEQNMLSKLLKDSLEKMSRREIKELCNELGMTNIDKVIGENKQVLIASTLTLF 124
Query: 118 RMGGFKSYQLALIVANAVIK 137
+ GG SY LA+ VA+A+++
Sbjct: 125 KAGGSHSYALAVSVADAMVR 144
>ref|NP_414552.1| (NC_000913) putative oxidoreductase [Escherichia coli K12]
sp|P75617|YAAW_ECOLI Hypothetical protein yaaW
pir||C64721 hypothetical protein b0011 - Escherichia coli (strain K-12)
gb|AAC73122.1| (AE000112) putative oxidoreductase [Escherichia coli K12]
Length = 237
Score = 79.7 bits (195), Expect = 2e-14
Identities = 59/185 (31%), Positives = 88/185 (46%), Gaps = 15/185 (8%)
Query: 21 IAEELQRYGGNSFMNFFRDEGVLYKEILCDACDHLKVNYNKKSDTTLIEENMLSSILQKS 80
IA ELQ +GG+S N R G LY+ IL D LK+ +K+ T IE+ +L L+ +
Sbjct: 66 IAGELQHFGGDSIANKLRGHGKLYRAILLDVSKRLKLKADKEMSTFEIEQQLLEQFLRNT 125
Query: 81 LEKMSDEEIRELCDELGVKNTNKLGK--QALSTAALTLFRMGGFKSYQLALIVANAVIKA 138
+KM +E +E + + N+L + L L + S QL I+ +
Sbjct: 126 WKKMDEEHKQEFLHAVDAR-VNELEELLPLLMKDKLLAKGVSHLLSSQLTRILRTHAAMS 184
Query: 139 IFQRGLSLGANAALTRGLSILTGPIGWIITGVWTAIDIAGPAYRVTIPACILVATLRLKA 198
+ GL GA L GP+G + GV ++G AYRVTIPA + +A LR
Sbjct: 185 VLGHGLLRGAG---------LGGPVGAALNGVKA---VSGSAYRVTIPAVLQIACLRRMV 232
Query: 199 QANEI 203
A ++
Sbjct: 233 SATQV 237
>ref|NP_285703.1| (NC_002655) putative oxidoreductase [Escherichia coli O157:H7
EDL933]
ref|NP_308038.1| (NC_002695) putative oxidoreductase [Escherichia coli O157:H7]
sp|P58316|YAAW_ECO57 Hypothetical protein yaaW
gb|AAG54311.1|AE005178_1 (AE005178) putative oxidoreductase [Escherichia coli O157:H7
EDL933]
dbj|BAB33434.1| (AP002550) putative oxidoreductase [Escherichia coli O157:H7]
Length = 237
Score = 78.6 bits (192), Expect = 4e-14
Identities = 58/185 (31%), Positives = 88/185 (47%), Gaps = 15/185 (8%)
Query: 21 IAEELQRYGGNSFMNFFRDEGVLYKEILCDACDHLKVNYNKKSDTTLIEENMLSSILQKS 80
IA ELQ +GG+S N R G LY+ IL D LK+ +K+ T IE+ +L L+ +
Sbjct: 66 IAGELQHFGGDSIANKLRGHGKLYRAILLDVSKRLKLKADKEMSTFEIEQQLLEQFLRNT 125
Query: 81 LEKMSDEEIRELCDELGVKNTNKLGK--QALSTAALTLFRMGGFKSYQLALIVANAVIKA 138
+KM +E +E + + N+L + L L + S QL I+ +
Sbjct: 126 WKKMDEEHKQEFLHAVDAR-VNELEELLPLLMKDKLLAKGVSHLLSSQLTRILRTHAAMS 184
Query: 139 IFQRGLSLGANAALTRGLSILTGPIGWIITGVWTAIDIAGPAYRVTIPACILVATLRLKA 198
+ GL GA L GP+G + GV ++G +YRVTIPA + +A LR
Sbjct: 185 VLGHGLLRGAG---------LGGPVGAALNGVKA---VSGSSYRVTIPAVLQIACLRRMV 232
Query: 199 QANEI 203
A ++
Sbjct: 233 SATQV 237
>pir||D56688 dnaK 5'-region hypothetical protein 2 - Escherichia coli
emb|CAA47934.1| (X67700) ORF4 [Escherichia coli]
Length = 237
Score = 78.2 bits (191), Expect = 5e-14
Identities = 58/185 (31%), Positives = 87/185 (46%), Gaps = 15/185 (8%)
Query: 21 IAEELQRYGGNSFMNFFRDEGVLYKEILCDACDHLKVNYNKKSDTTLIEENMLSSILQKS 80
IA ELQ +GG+S N R G LY+ IL D LK+ +K+ T IE+ +L L+ +
Sbjct: 66 IAGELQHFGGDSIANKLRGHGKLYRAILLDVSKRLKLKADKEMSTFEIEQQLLEQFLRNT 125
Query: 81 LEKMSDEEIRELCDELGVKNTNKLGK--QALSTAALTLFRMGGFKSYQLALIVANAVIKA 138
+KM +E +E + + N+L + L L + S QL I+ +
Sbjct: 126 WKKMDEEHKQEFLHAVDAR-VNELEELLPLLMKDKLLAKGVSHLLSSQLTRILRTHAAMS 184
Query: 139 IFQRGLSLGANAALTRGLSILTGPIGWIITGVWTAIDIAGPAYRVTIPACILVATLRLKA 198
+ G GA L GP+G + GV ++G AYRVTIPA + +A LR
Sbjct: 185 VLGHGFLRGAG---------LGGPVGAALNGVKA---VSGSAYRVTIPAVLQIACLRRMV 232
Query: 199 QANEI 203
A ++
Sbjct: 233 SATQV 237
>ref|NP_454620.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
ref|NP_459015.1| (NC_003197) positive regulator for sigma H (sigma 32) promoters,
permitting growth at high temperature [Salmonella
typhimurium LT2]
gb|AAL18974.1| (AE008693) positive regulator for sigma H (sigma 32) promoters,
permitting growth at high temperature [Salmonella
typhimurium LT2]
emb|CAD01163.1| (AL627265) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 237
Score = 70.5 bits (171), Expect = 1e-11
Identities = 56/176 (31%), Positives = 79/176 (44%), Gaps = 13/176 (7%)
Query: 21 IAEELQRYGGNSFMNFFRDEGVLYKEILCDACDHLKVNYNKKSDTTLIEENMLSSILQKS 80
IA E Q YGG+S N R G Y+ IL D LK+ +K T IE+ +L L+ +
Sbjct: 66 IAGEFQHYGGDSIANKLRGHGKQYRAILLDVAKRLKLKADKSMSTFEIEQQLLEHFLRHT 125
Query: 81 LEKMSDEEIRELCDELGVKNTNKLGKQALSTAALTLFR-MGGFKSYQLALIVANAVIKAI 139
+KM +E + K + L +L + + S QL I+ +I
Sbjct: 126 WQKMDAAHKQEFLQAVDAKVSELEELLPLLMKDRSLAKGVSHLLSTQLTRILRTHAAMSI 185
Query: 140 FQRGLSLGANAALTRGLSILTGPIGWIITGVWTAIDIAGPAYRVTIPACILVATLR 195
GL GA L GP+G + GV ++G AYRVTIPA + +A LR
Sbjct: 186 LGHGLLRGAG---------LGGPVGAALNGVKA---MSGSAYRVTIPAVLQIACLR 229
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.136 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,802,305
Number of Sequences: 1026957
Number of extensions: 4507760
Number of successful extensions: 13700
Number of sequences better than 1.0e-02: 10
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13681
Number of HSP's gapped (non-prelim): 10
length of query: 207
length of database: 324,149,939
effective HSP length: 116
effective length of query: 91
effective length of database: 205,022,927
effective search space: 18657086357
effective search space used: 18657086357
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 94 (40.8 bits)