BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644794|ref|NP_206964.1| hypothetical protein
[Helicobacter pylori 26695]
         (173 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_206964.1|  (NC_000915) hypothetical protein [Helicoba...   343  4e-94
ref|NP_222872.1|  (NC_000921) putative histidine kinase sens...   327  3e-89
ref|NP_282409.1|  (NC_002163) two-component sensor (histidin...    44  0.001
ref|NP_282373.1|  (NC_002163) putative two-component sensor ...    42  0.003
gb|AAC08022.1|  (AF053961) putative histidine protein kinase...    41  0.005

>ref|NP_206964.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||E64540 hypothetical protein HP0165 - Helicobacter pylori (strain 26695)
 gb|AAD07239.1| (AE000537) H. pylori predicted coding region HP0165 [Helicobacter
           pylori 26695]
          Length = 173

 Score =  343 bits (881), Expect = 4e-94
 Identities = 173/173 (100%), Positives = 173/173 (100%)

Query: 1   MRFSIFFKVVALFMITLFSFGAFAYYFVSSQISHENYQNEMRHYQFVTTINEILNNYSDY 60
           MRFSIFFKVVALFMITLFSFGAFAYYFVSSQISHENYQNEMRHYQFVTTINEILNNYSDY
Sbjct: 1   MRFSIFFKVVALFMITLFSFGAFAYYFVSSQISHENYQNEMRHYQFVTTINEILNNYSDY 60

Query: 61  RAIEDYLYKIGFRETTIENLEKVLAKRRHQLHHRNIGYAEVFKFSDMVFILLKKDEHFVL 120
           RAIEDYLYKIGFRETTIENLEKVLAKRRHQLHHRNIGYAEVFKFSDMVFILLKKDEHFVL
Sbjct: 61  RAIEDYLYKIGFRETTIENLEKVLAKRRHQLHHRNIGYAEVFKFSDMVFILLKKDEHFVL 120

Query: 121 YKDLHSVSYRNYFLAITVGLLLILFLFLFVLQSLLPLRELRSQVKPSLKGIKA 173
           YKDLHSVSYRNYFLAITVGLLLILFLFLFVLQSLLPLRELRSQVKPSLKGIKA
Sbjct: 121 YKDLHSVSYRNYFLAITVGLLLILFLFLFVLQSLLPLRELRSQVKPSLKGIKA 173



>ref|NP_222872.1| (NC_000921) putative histidine kinase sensor protein [Helicobacter
           pylori J99]
 pir||A71969 probable histidine kinase sensor protein - Helicobacter pylori
           (strain J99)
 gb|AAD05720.1| (AE001453) putative histidine kinase sensor protein [Helicobacter
           pylori J99]
          Length = 442

 Score =  327 bits (839), Expect = 3e-89
 Identities = 166/173 (95%), Positives = 168/173 (96%)

Query: 1   MRFSIFFKVVALFMITLFSFGAFAYYFVSSQISHENYQNEMRHYQFVTTINEILNNYSDY 60
           MRFSIFFKVVALFMITLFSFGAFAYYFVSSQISHENYQNEMRHYQFVTTINEILNNYSDY
Sbjct: 1   MRFSIFFKVVALFMITLFSFGAFAYYFVSSQISHENYQNEMRHYQFVTTINEILNNYSDY 60

Query: 61  RAIEDYLYKIGFRETTIENLEKVLAKRRHQLHHRNIGYAEVFKFSDMVFILLKKDEHFVL 120
           RAIEDYLYKIGFRETTIENLEKVLAKRRHQLHHRNI YAEVFKFSDMVFILLKKDEHFVL
Sbjct: 61  RAIEDYLYKIGFRETTIENLEKVLAKRRHQLHHRNIWYAEVFKFSDMVFILLKKDEHFVL 120

Query: 121 YKDLHSVSYRNYFLAITVGLLLILFLFLFVLQSLLPLRELRSQVKPSLKGIKA 173
           YKDLHSVSYRNYFLAITVGLLLILFLFLFVLQSLLPLRELRSQVK   +G K+
Sbjct: 121 YKDLHSVSYRNYFLAITVGLLLILFLFLFVLQSLLPLRELRSQVKRFAQGDKS 173



>ref|NP_282409.1| (NC_002163) two-component sensor (histidine kinase) [Campylobacter
           jejuni]
 pir||H81333 two-component sensor (histidine kinase) Cj1262 [imported] -
           Campylobacter jejuni (strain NCTC 11168)
 emb|CAB73516.1| (AL139077) two-component sensor (histidine kinase) [Campylobacter
           jejuni]
          Length = 411

 Score = 43.5 bits (101), Expect = 0.001
 Identities = 52/184 (28%), Positives = 79/184 (42%), Gaps = 30/184 (16%)

Query: 3   FSIFFKVVALFMITLFSFGAFAYYFVSSQISHENYQNEMRHYQFVTTINEILNNYSDYRA 62
           +SI  K++ LF++T F       + V  +I    Y NE    +    I  +L +Y +   
Sbjct: 5   YSIHTKLIILFVVTFFL--VCVLFIVLLKIEGNTY-NEEESLKQENLIKNLLISYENTSG 61

Query: 63  IE--DYLYKIGFRETTIENLEKVLAKRRHQLHHRNIGYAEVFKFSDMVFILLKKDEHFVL 120
           +E   YL   GF      NL K +         RN G + +FK    +  L     H  L
Sbjct: 62  VEIGAYLGNSGFNAIQNPNLVKAI---------RNNGQS-LFKAGGELCTLSSLKYHSNL 111

Query: 121 YKDLH----------SVSYRNYFLAITVGL----LLILFLFLFVLQSLLPLRELRSQVKP 166
           Y D+           + S R Y L + +G     LL++F++  VL+SL PL++LR QV  
Sbjct: 112 YFDVQCKDFDGLYEENTSDRVYNLLL-IGFFSFSLLVVFMYFSVLKSLEPLKKLRRQVAE 170

Query: 167 SLKG 170
              G
Sbjct: 171 VANG 174



>ref|NP_282373.1| (NC_002163) putative two-component sensor [Campylobacter jejuni]
 pir||D81329 probable two-component sensor Cj1226c [imported] - Campylobacter
           jejuni (strain NCTC 11168)
 emb|CAB73480.1| (AL139077) putative two-component sensor [Campylobacter jejuni]
          Length = 415

 Score = 42.0 bits (97), Expect = 0.003
 Identities = 23/78 (29%), Positives = 43/78 (54%), Gaps = 2/78 (2%)

Query: 95  NIGYAEVFKFSDMVFILLKKDEHFVLYKDLHSVSYRNYFL-AITVGLLLIL-FLFLFVLQ 152
           N G  E+  ++  V++ +  D    LYKD    +YR + + AI V ++ IL  L++++ +
Sbjct: 99  NNGLIEIISYNRQVYLNIIYDGKVYLYKDQDYQTYRYFIIKAIAVAVICILVLLYIYIFK 158

Query: 153 SLLPLRELRSQVKPSLKG 170
            L PL+ L+ Q+    +G
Sbjct: 159 KLKPLKRLKKQIDKFAQG 176



>gb|AAC08022.1| (AF053961) putative histidine protein kinase [Campylobacter jejuni]
          Length = 189

 Score = 41.2 bits (95), Expect = 0.005
 Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 30/184 (16%)

Query: 3   FSIFFKVVALFMITLFSFGAFAYYFVSSQISHENYQNEMRHYQFVTTINEILNNYSDYRA 62
           +SI  K++ LF++T F         +  + +  N +  ++       I  +L +Y +   
Sbjct: 5   YSIHTKLIILFVVTFFLVCVLFIVLLKIEGNTYNVEESLKQENL---IKNLLISYENTSG 61

Query: 63  IE--DYLYKIGFRETTIENLEKVLAKRRHQLHHRNIGYAEVFKFSDMVFILLKKDEHFVL 120
           +E   YL   GF      NL K +         RN G + +FK    +  L     H  L
Sbjct: 62  VEIGAYLGNSGFNAIQNPNLVKAI---------RNNGQS-LFKAGGELCTLSSLKYHSNL 111

Query: 121 YKDLH----------SVSYRNYFLAITVGL----LLILFLFLFVLQSLLPLRELRSQVKP 166
           Y D+           + S R Y L + +G     LL++F++  VL+SL PL++LR QV  
Sbjct: 112 YFDVQCKDFDGLYEENTSDRVYNLLL-IGFFSFSLLVVFMYFSVLKSLEPLKKLRRQVAE 170

Query: 167 SLKG 170
              G
Sbjct: 171 VANG 174



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.331    0.145    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,670,118
Number of Sequences: 1026957
Number of extensions: 3684587
Number of successful extensions: 15945
Number of sequences better than 1.0e-02: 5
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 15940
Number of HSP's gapped (non-prelim): 6
length of query: 173
length of database: 324,149,939
effective HSP length: 113
effective length of query: 60
effective length of database: 208,103,798
effective search space: 12486227880
effective search space used: 12486227880
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 93 (40.4 bits)