BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644796|ref|NP_206966.1| hypothetical protein
[Helicobacter pylori 26695]
         (157 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_206966.1|  (NC_000915) hypothetical protein [Helicoba...   304  2e-82
ref|NP_222874.1|  (NC_000921) putative [Helicobacter pylori ...   269  7e-72
ref|NP_281949.1|  (NC_002163) hypothetical protein Cj0788 [C...    61  5e-09

>ref|NP_206966.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||G64540 hypothetical protein HP0167 - Helicobacter pylori (strain 26695)
 gb|AAD07240.1| (AE000537) H. pylori predicted coding region HP0167 [Helicobacter
           pylori 26695]
          Length = 157

 Score =  304 bits (778), Expect = 2e-82
 Identities = 157/157 (100%), Positives = 157/157 (100%)

Query: 1   MAGRMELKNIISETLNEIEKMAKTIDNNFDAAQKTPSFFKTPPYLQNTLDPQNANVPLEP 60
           MAGRMELKNIISETLNEIEKMAKTIDNNFDAAQKTPSFFKTPPYLQNTLDPQNANVPLEP
Sbjct: 1   MAGRMELKNIISETLNEIEKMAKTIDNNFDAAQKTPSFFKTPPYLQNTLDPQNANVPLEP 60

Query: 61  KNAAKIETQEKITEEKEEAPEIITEEIAQENPTQVLISNERVFLKGLLERTLVLFKGMQA 120
           KNAAKIETQEKITEEKEEAPEIITEEIAQENPTQVLISNERVFLKGLLERTLVLFKGMQA
Sbjct: 61  KNAAKIETQEKITEEKEEAPEIITEEIAQENPTQVLISNERVFLKGLLERTLVLFKGMQA 120

Query: 121 LEEKEAMKRLDLVARFLQYQLSTLEKRLESLERENTE 157
           LEEKEAMKRLDLVARFLQYQLSTLEKRLESLERENTE
Sbjct: 121 LEEKEAMKRLDLVARFLQYQLSTLEKRLESLERENTE 157



>ref|NP_222874.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||B71966 hypothetical protein jhp0153 - Helicobacter pylori (strain J99)
 gb|AAD05736.1| (AE001454) putative [Helicobacter pylori J99]
          Length = 157

 Score =  269 bits (688), Expect = 7e-72
 Identities = 140/157 (89%), Positives = 146/157 (92%)

Query: 1   MAGRMELKNIISETLNEIEKMAKTIDNNFDAAQKTPSFFKTPPYLQNTLDPQNANVPLEP 60
           MAGRMELKNIISETLNEIEKMAKTID+ F+ AQKTPSFFKTP +LQNT + +NAN PLEP
Sbjct: 1   MAGRMELKNIISETLNEIEKMAKTIDDGFNTAQKTPSFFKTPSHLQNTPNSKNANTPLEP 60

Query: 61  KNAAKIETQEKITEEKEEAPEIITEEIAQENPTQVLISNERVFLKGLLERTLVLFKGMQA 120
           KNAAKIETQEKITEEKEEA EIITEEI QENPTQ LI NERVFLKGLLERTLVLFKGMQA
Sbjct: 61  KNAAKIETQEKITEEKEEAKEIITEEIVQENPTQALIPNERVFLKGLLERTLVLFKGMQA 120

Query: 121 LEEKEAMKRLDLVARFLQYQLSTLEKRLESLERENTE 157
           LEEKEA+KRLDLVARFLQYQLS LEKRLESLERENTE
Sbjct: 121 LEEKEALKRLDLVARFLQYQLSVLEKRLESLERENTE 157



>ref|NP_281949.1| (NC_002163) hypothetical protein Cj0788 [Campylobacter jejuni]
 pir||D81350 hypothetical protein Cj0788 [imported] - Campylobacter jejuni
           (strain NCTC 11168)
 emb|CAB73053.1| (AL139076) hypothetical protein Cj0788 [Campylobacter jejuni]
          Length = 163

 Score = 60.8 bits (146), Expect = 5e-09
 Identities = 45/146 (30%), Positives = 74/146 (49%), Gaps = 2/146 (1%)

Query: 5   MELKNIISETLNEIEKMAKT-IDNNFDAAQKTPSFFKTPPYLQNTLDPQNANVPLEPKNA 63
           ME +   +E L E E   KT I +     +       TP  L++ +         + +N 
Sbjct: 18  MEEQRRQNEILKEQELNRKTEIKDELPPMEFVCEELDTPQDLEDKISMAKFEEEQKIQNN 77

Query: 64  AKIETQEKITEEKEEAPEIITEEIAQENPTQVLISNERVFLKGLLERTLVLFKGMQALEE 123
            +I TQE   E K+E P +  E +     T+V   NE +FLK L ER LVLF+G+ ++++
Sbjct: 78  IEISTQEN-KEFKKEEPFLQNEILNPSVMTEVQTLNEDIFLKHLRERILVLFEGLNSIKK 136

Query: 124 KEAMKRLDLVARFLQYQLSTLEKRLE 149
            +   RL+L   FL++ L+ +E +L+
Sbjct: 137 DDLENRLNLTINFLEFLLANIEDKLK 162



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.310    0.128    0.331 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,238,238
Number of Sequences: 1026957
Number of extensions: 3498316
Number of successful extensions: 14618
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14615
Number of HSP's gapped (non-prelim): 3
length of query: 157
length of database: 324,149,939
effective HSP length: 111
effective length of query: 46
effective length of database: 210,157,712
effective search space: 9667254752
effective search space used: 9667254752
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 92 (40.0 bits)