BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644797|ref|NP_206967.1| hypothetical protein
[Helicobacter pylori 26695]
(87 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206967.1| (NC_000915) hypothetical protein [Helicoba... 180 3e-45
ref|NP_222875.1| (NC_000921) putative [Helicobacter pylori ... 163 3e-40
ref|NP_281948.1| (NC_002163) hypothetical protein Cj0787 [C... 50 4e-06
>ref|NP_206967.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64540 hypothetical protein HP0168 - Helicobacter pylori (strain 26695)
gb|AAD07241.1| (AE000537) H. pylori predicted coding region HP0168 [Helicobacter
pylori 26695]
Length = 87
Score = 180 bits (456), Expect = 3e-45
Identities = 87/87 (100%), Positives = 87/87 (100%)
Query: 1 MPLETITLANIYEEQGFFEEALQIYINILKKTPNHAEALKQMKRLEKIQKNGAPFKHDAL 60
MPLETITLANIYEEQGFFEEALQIYINILKKTPNHAEALKQMKRLEKIQKNGAPFKHDAL
Sbjct: 1 MPLETITLANIYEEQGFFEEALQIYINILKKTPNHAEALKQMKRLEKIQKNGAPFKHDAL 60
Query: 61 LERHYLNFIKGDRLSVENLEKWLVEWN 87
LERHYLNFIKGDRLSVENLEKWLVEWN
Sbjct: 61 LERHYLNFIKGDRLSVENLEKWLVEWN 87
>ref|NP_222875.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71966 hypothetical protein jhp0154 - Helicobacter pylori (strain J99)
gb|AAD05737.1| (AE001454) putative [Helicobacter pylori J99]
Length = 87
Score = 163 bits (413), Expect = 3e-40
Identities = 79/87 (90%), Positives = 84/87 (95%)
Query: 1 MPLETITLANIYEEQGFFEEALQIYINILKKTPNHAEALKQMKRLEKIQKNGAPFKHDAL 60
MPLETITLA+IYEEQGFFEEALQIY NILKKTP++ EALKQMKRLEKIQKN APFKHDAL
Sbjct: 1 MPLETITLAHIYEEQGFFEEALQIYTNILKKTPDNTEALKQMKRLEKIQKNCAPFKHDAL 60
Query: 61 LERHYLNFIKGDRLSVENLEKWLVEWN 87
L++HYLNFIKGDRLSVENLEKWLVEWN
Sbjct: 61 LKQHYLNFIKGDRLSVENLEKWLVEWN 87
>ref|NP_281948.1| (NC_002163) hypothetical protein Cj0787 [Campylobacter jejuni]
pir||C81350 hypothetical protein Cj0787 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73052.1| (AL139076) hypothetical protein Cj0787 [Campylobacter jejuni]
Length = 82
Score = 50.4 bits (119), Expect = 4e-06
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 10/88 (11%)
Query: 1 MPLETITLANIYEEQGFFEEALQIYINILKKTPNHAEALKQMKRLEKIQKNGAPFKHDAL 60
M T+T A+IYE QG +EAL+IY NILK+ PN+ A+ ++RL +G KH
Sbjct: 1 MMKNTVTEASIYEAQGLKDEALEIYKNILKEDPNNQNAIDAVRRL-----SGFRSKHKD- 54
Query: 61 LERHYLNF---IKGDRLSVENLEKWLVE 85
L L+F +K D + ++WL++
Sbjct: 55 LNTQMLDFFINMKSDE-EINEFKRWLIK 81
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.318 0.136 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,910,154
Number of Sequences: 1026957
Number of extensions: 1863716
Number of successful extensions: 6414
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6411
Number of HSP's gapped (non-prelim): 3
length of query: 87
length of database: 324,149,939
effective HSP length: 63
effective length of query: 24
effective length of database: 259,451,648
effective search space: 6226839552
effective search space used: 6226839552
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 90 (39.3 bits)