BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644803|ref|NP_206973.1| hypothetical protein
[Helicobacter pylori 26695]
(258 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206973.1| (NC_000915) hypothetical protein [Helicoba... 522 e-147
ref|NP_222881.1| (NC_000921) putative [Helicobacter pylori ... 475 e-133
ref|NP_282592.1| (NC_002163) putative integral membrane pro... 89 5e-17
ref|NP_602734.1| (NC_003454) Hypothetical protein [Fusobact... 45 6e-04
ref|NP_008372.1|CYTB_13186 (NC_001861) cytochrome b [Onchoc... 44 0.002
ref|NP_066484.1| (NC_002572) SecY-independent transporter p... 43 0.004
ref|NP_519376.1| (NC_003295) PROBABLE TRANSMEMBRANE PROTEIN... 43 0.004
ref|NP_049599.1| (NC_000862) NADH dehydrogenase subunit 5 [... 42 0.007
>ref|NP_206973.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64541 hypothetical protein HP0174 - Helicobacter pylori (strain 26695)
gb|AAD07243.1| (AE000537) H. pylori predicted coding region HP0174 [Helicobacter
pylori 26695]
Length = 258
Score = 522 bits (1344), Expect = e-147
Identities = 258/258 (100%), Positives = 258/258 (100%)
Query: 1 MRLNYPSKVSEEGFQVMVLSLSILKKSFNDFLSTRMLLINLGPILLSLAFFGAVFYYNGG 60
MRLNYPSKVSEEGFQVMVLSLSILKKSFNDFLSTRMLLINLGPILLSLAFFGAVFYYNGG
Sbjct: 1 MRLNYPSKVSEEGFQVMVLSLSILKKSFNDFLSTRMLLINLGPILLSLAFFGAVFYYNGG 60
Query: 61 NIVGYCQTLLPQSLNDYSHSQGFFAGVFAWVFKALVYFLIFWIVILLSLVINIFASIFYT 120
NIVGYCQTLLPQSLNDYSHSQGFFAGVFAWVFKALVYFLIFWIVILLSLVINIFASIFYT
Sbjct: 61 NIVGYCQTLLPQSLNDYSHSQGFFAGVFAWVFKALVYFLIFWIVILLSLVINIFASIFYT 120
Query: 121 PLVVSYLHQKYYPHVVLEEFGSILFSIKYFLKSLAFMLLFLAVLTPFYFIPFIGVFGVFF 180
PLVVSYLHQKYYPHVVLEEFGSILFSIKYFLKSLAFMLLFLAVLTPFYFIPFIGVFGVFF
Sbjct: 121 PLVVSYLHQKYYPHVVLEEFGSILFSIKYFLKSLAFMLLFLAVLTPFYFIPFIGVFGVFF 180
Query: 181 SIVPHFLFFKNTMSLDIASMIFNHQSYQNLLKQHRLKHYRFSFFCYLFSLIPFFNFFATL 240
SIVPHFLFFKNTMSLDIASMIFNHQSYQNLLKQHRLKHYRFSFFCYLFSLIPFFNFFATL
Sbjct: 181 SIVPHFLFFKNTMSLDIASMIFNHQSYQNLLKQHRLKHYRFSFFCYLFSLIPFFNFFATL 240
Query: 241 LQTLMLTHYFFIFKEKEC 258
LQTLMLTHYFFIFKEKEC
Sbjct: 241 LQTLMLTHYFFIFKEKEC 258
>ref|NP_222881.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71967 hypothetical protein jhp0160 - Helicobacter pylori (strain J99)
gb|AAD05743.1| (AE001454) putative [Helicobacter pylori J99]
Length = 242
Score = 475 bits (1222), Expect = e-133
Identities = 233/242 (96%), Positives = 236/242 (97%)
Query: 17 MVLSLSILKKSFNDFLSTRMLLINLGPILLSLAFFGAVFYYNGGNIVGYCQTLLPQSLND 76
MVL LSI KKSFNDFLS RMLLINLGPILLSLAFFGA+FYYNGG+IV YCQTLLPQSLND
Sbjct: 1 MVLFLSIFKKSFNDFLSARMLLINLGPILLSLAFFGAIFYYNGGSIVNYCQTLLPQSLND 60
Query: 77 YSHSQGFFAGVFAWVFKALVYFLIFWIVILLSLVINIFASIFYTPLVVSYLHQKYYPHVV 136
Y+HSQGFFAGVFAWVFKALVYFLIFWIVILLSLVINIFASIFYTPLVVSYLHQKYYPHVV
Sbjct: 61 YAHSQGFFAGVFAWVFKALVYFLIFWIVILLSLVINIFASIFYTPLVVSYLHQKYYPHVV 120
Query: 137 LEEFGSILFSIKYFLKSLAFMLLFLAVLTPFYFIPFIGVFGVFFSIVPHFLFFKNTMSLD 196
LEEFGSILFSIKYFLKSL FMLLFLAVLTP YFIPFIGVFGVFFSIVPHFLFFKNTMSLD
Sbjct: 121 LEEFGSILFSIKYFLKSLTFMLLFLAVLTPLYFIPFIGVFGVFFSIVPHFLFFKNTMSLD 180
Query: 197 IASMIFNHQSYQNLLKQHRLKHYRFSFFCYLFSLIPFFNFFATLLQTLMLTHYFFIFKEK 256
IASMIFNHQSYQNLLKQHRLKHYRFSFFCYLFSLIPFFNFFATLLQTLMLTHYFFIFKEK
Sbjct: 181 IASMIFNHQSYQNLLKQHRLKHYRFSFFCYLFSLIPFFNFFATLLQTLMLTHYFFIFKEK 240
Query: 257 EC 258
EC
Sbjct: 241 EC 242
>ref|NP_282592.1| (NC_002163) putative integral membrane protein [Campylobacter
jejuni]
pir||C81291 probable integral membrane protein Cj1452 [imported] -
Campylobacter jejuni (strain NCTC 11168)
emb|CAB73875.1| (AL139078) putative integral membrane protein [Campylobacter
jejuni]
Length = 237
Score = 89.0 bits (219), Expect = 5e-17
Identities = 66/233 (28%), Positives = 114/233 (48%), Gaps = 14/233 (6%)
Query: 21 LSILKKSFNDFLSTRMLLINLGPILLSLAFFGAVFYYNGGNIVGYCQTLLPQSLNDYSHS 80
+ ILK + DFLS + L L P++ SL + ++ Y +L S+ + S
Sbjct: 1 MDILKLAIKDFLSLKFLKFALIPLIFSLILMLFLGVLGFSALLDYFNSLF--SVGEDSFW 58
Query: 81 QGFFAGVFAWVFKALVYFLIF-WIVILLSLVINIFASIFYTPLVVSYLHQKYYPHVVLEE 139
F+A F + ++ FL +IV+ S+ + +F + F TP + ++QKYY + E
Sbjct: 59 AWFYALHFVQILITIISFLFSGFIVVFASVFLALFITSFLTPFIAKEINQKYYHYDNTNE 118
Query: 140 FGSI--LFSI-KYFLKSLAFMLLFLAVLTPFYFIPFIGVFGVFFSIVPHFLFFKNTMSLD 196
++ +F I K F+K + +LL L F+PFI +F + + ++LF K M +D
Sbjct: 119 VSTLKTIFEIFKIFIKFIGILLLCTLAL----FLPFINIFVYYLAF--YYLFHKLLM-ID 171
Query: 197 IASMIFNHQSYQNLLKQHRLKHYRFSFFC-YLFSLIPFFNFFATLLQTLMLTH 248
+ S I + +S++N ++FS C YL S +P F + + LTH
Sbjct: 172 VTSTILDKESFKNFHSDFSPLEFKFSTLCFYLLSSVPLLGLFLQVFFVIFLTH 224
>ref|NP_602734.1| (NC_003454) Hypothetical protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL94033.1| (AE010496) Hypothetical protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 387
Score = 45.4 bits (106), Expect = 6e-04
Identities = 59/253 (23%), Positives = 104/253 (40%), Gaps = 32/253 (12%)
Query: 1 MRLNYPSKVSEEGFQVMVLSLSILKKSFNDFLSTRMLLINLGPILLSLAFF--GAVFYYN 58
+++++ K +E I KS ++F + L +NL PI+ S+ +F ++ Y
Sbjct: 54 LKISFQIKEKQENNNQTSKENIIKPKSASEFWT---LTLNL-PIMFSIVYFIVDTIYKYK 109
Query: 59 GGNIVGYCQTLLPQSLNDYSHSQGFFAGVFAWVFKALVYFLIFWIVI-----------LL 107
+ LP S F VF +F +V L+FW+ L+
Sbjct: 110 MKE-----KFYLPSEY----FSIDFKNTVFYMIFSIIVLPLLFWVWFKDNKDNNMNKKLI 160
Query: 108 SLVINIFASIFYTPLVVSYLHQKYYPHVVLEEFGSILFSIKYFLKSL-----AFMLLFLA 162
S++ I L+ + Y +L F + F I Y K L F LLFL
Sbjct: 161 SMICIILFFFIINKLLKLEIFILYVLFYLLVLFSTFFFFIMYLEKRLIKIIILFFLLFLL 220
Query: 163 VLTPFYFIPFIGVFGVFFSIVPHFLFFKNTMSLDIASMIFNHQSYQNLLKQHRLKHYRFS 222
+ P YF+ F+ +P+ +F+ + + I ++I +N+ K+ K+ F
Sbjct: 221 IKMP-YFLFFLKECYTKIKNIPNEIFYGVIILIIIINLISIIFVNKNIRKKENTKNLIFL 279
Query: 223 FFCYLFSLIPFFN 235
FF Y + +I F+
Sbjct: 280 FFIYYYIVILLFS 292
>ref|NP_008372.1|CYTB_13186 (NC_001861) cytochrome b [Onchocerca volvulus]
pir||T11067 ubiquinol--cytochrome-c reductase (EC 1.10.2.2) cytochrome b -
nematode (Onchocerca volvulus) mitochondrion
gb|AAC61614.1| (AF015193) cytochrome b [Onchocerca volvulus]
Length = 360
Score = 43.5 bits (101), Expect = 0.002
Identities = 59/217 (27%), Positives = 92/217 (42%), Gaps = 29/217 (13%)
Query: 41 LGPILLS--LAFFGAVFYYNGGNIVGYCQTLLPQS----LNDYSHSQG---FFAGVFAWV 91
LG +L+S L F FYY G Q ++ + L HS G FF ++ +
Sbjct: 26 LGIMLMSQILTGFFLTFYYTAGEAFSSVQYIMFEVNLGWLLRIMHSNGASMFFLFIYLHI 85
Query: 92 FKALVYFLIFWIVILLS--LVINIFASIFYTPLVVSYLHQKYYPHVVLEEFGSILFSIKY 149
FK L+Y I + LS + + I +T V+ + Y+ VV+ S++ S+ Y
Sbjct: 86 FKGLIYGSYRLIGVWLSGIFIYFLLMGIAFTGYVLIWGQMSYWAAVVIT---SLMTSVPY 142
Query: 150 FLKSLAFML-----LFLAVLTPFYFIPFIGVFGVFFSIVPHFLFFKNTMSLDIASMIFNH 204
K L + + + L FY + FI + + +V H F T S +S ++ H
Sbjct: 143 LGKYLVWWIWGSFSVCENTLKFFYSVHFILPWSLMVLVVFHLFFLHFTGS---SSSLYCH 199
Query: 205 QSYQNL--LKQHRLK---HYRFSFFCYLFSLIPFFNF 236
Y + LK F FF LFSL +F+F
Sbjct: 200 GDYDKIHFFPSFWLKDGFDIFFYFFLILFSL--YFSF 234
>ref|NP_066484.1| (NC_002572) SecY-independent transporter protein [Rhodomonas
salina]
gb|AAG17755.1|AF288090_31 (AF288090) SecY-independent transporter protein [Rhodomonas salina]
Length = 240
Score = 42.7 bits (99), Expect = 0.004
Identities = 52/184 (28%), Positives = 75/184 (40%), Gaps = 33/184 (17%)
Query: 97 YFLIFWIVILLSLVINIFASIFY------TPLVVSYLHQKYYPHVVLEEFGSILFSIKYF 150
Y I +I +S INI A IF T V L + +Y V+ F S+ FS +F
Sbjct: 16 YLFICFIFTFVSAYINIDAFIFLIIKPLNTNFVFMNLFEGFYCFFVMSFFLSLFFS--FF 73
Query: 151 LKSLAFMLLFLAVLTP-----FYFIP----FIGVFGVFFS---IVPHFLFFKNTMSLDIA 198
L +F LT F F+ +G+F +FFS +P F++F +
Sbjct: 74 LGVYSFFSFIKCGLTRNEKNVFLFVLKLEFVVGLFSIFFSYNIFLPQFIYFLLSFEQSKT 133
Query: 199 SMIFNHQSYQNLLKQHRLKHYRFSFFCYLFSL-----IPFFNFFATLLQTLMLTHYFFIF 253
+F N Q RL Y F F+ FS IPF F +Q ++ + F I
Sbjct: 134 DNLF------NFFFQARLLDYIFVFWSIFFSAFFLFQIPFLIFLC--VQFRIIDNNFLIR 185
Query: 254 KEKE 257
+E
Sbjct: 186 LRRE 189
>ref|NP_519376.1| (NC_003295) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
emb|CAD14957.1| (AL646063) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
Length = 285
Score = 42.7 bits (99), Expect = 0.004
Identities = 37/160 (23%), Positives = 70/160 (43%), Gaps = 12/160 (7%)
Query: 32 LSTRMLLINLGPILLSLAFFGAVFYYNGGNIVGYCQTLL---PQSLNDYSHSQGFFAGVF 88
L RML + + P +++L +G + Y+ ++ + +L P + YS F
Sbjct: 16 LHPRMLFMTVLPFIVALLVWGPILYFGWNPVMEVARGMLEGLPLTHWIYSGMDSLGMTGF 75
Query: 89 AWVFKALVYFLIFWIVILLSLVINIFASIFYTPLVVSYLHQKYYPHVVLEEFGSILFSIK 148
V LV + VI++S+++ F P V+ +L + Y P + + GS+ S+
Sbjct: 76 RAVLTPLVVIAVLVPVIVVSILV--FVGAASVPAVMRFLDRSY-PLLERRQGGSVFGSVM 132
Query: 149 YFLKSLAFMLLFLAVLTPFYFIPFIGVFGVFFSIVPHFLF 188
+ L + V P + IP FF+++P L+
Sbjct: 133 HSLGCTLVFAVVAVVTLPLWLIP------PFFALIPPLLW 166
>ref|NP_049599.1| (NC_000862) NADH dehydrogenase subunit 5 [Tetrahymena pyriformis]
gb|AAD41944.1|AF160864_32 (AF160864) NADH dehydrogenase subunit 5 [Tetrahymena pyriformis]
Length = 755
Score = 42.0 bits (97), Expect = 0.007
Identities = 59/255 (23%), Positives = 112/255 (43%), Gaps = 57/255 (22%)
Query: 22 SILKKSFND---FLSTRMLLINLGPI-LLSLAFFG--AVFYYNGGNIVGYCQTLLPQSLN 75
+I K++ N FL T +L + + L+ +++ G VF N +I + ++L
Sbjct: 166 NITKETLNKYPLFLYTGLLFLTTTILSLICMSYLGLYGVFVVNLISITLFWVSMLYYFSV 225
Query: 76 DYSHSQGFFAGVFAWVFKALVYFLIFWIVI--------LLSLVINIFASIFYTPLVVSYL 127
S + ++ + W++ + Y + F ++I L+L I +F I+ ++
Sbjct: 226 IVSENTFYYINLGKWMYLSNGYRISFDLLIDTTSISFSFLTLTIGVFVYIY------TFS 279
Query: 128 HQKYYPHV--VLEEFGSILFSIKYFLKSLAFMLLFLAV----LTPFYFIPF--------- 172
+ +Y P V ++ S + S+ + S F+++FL LT F+ I F
Sbjct: 280 YFRYEPLVERLILFLNSFMISMILLVSSGNFIVMFLGWELIGLTSFFLINFWSTRVGTLK 339
Query: 173 ----------IGVFGVFFSIVPHFLFFKNTMSLDIASMIFNHQSYQNLLKQHRLKHYRFS 222
+ +FF+I+ L F T +LDI ++FN+Q Y ++Y
Sbjct: 340 AAFKAFSFNKLSDLFLFFAIL---LIFNTTFNLDI--LVFNNQIYL-------YENYNIE 387
Query: 223 FFCYLFSLIPFFNFF 237
FF + +LI F +FF
Sbjct: 388 FFYFSINLIEFISFF 402
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.337 0.150 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,122,541
Number of Sequences: 1026957
Number of extensions: 6342162
Number of successful extensions: 34258
Number of sequences better than 1.0e-02: 8
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 34241
Number of HSP's gapped (non-prelim): 10
length of query: 258
length of database: 324,149,939
effective HSP length: 119
effective length of query: 139
effective length of database: 201,942,056
effective search space: 28069945784
effective search space used: 28069945784
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 96 (41.6 bits)