BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644810|ref|NP_206980.1| hypothetical protein
[Helicobacter pylori 26695]
(224 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206980.1| (NC_000915) hypothetical protein [Helicoba... 439 e-122
ref|NP_222890.1| (NC_000921) putative [Helicobacter pylori ... 395 e-109
ref|NP_281589.1| (NC_002163) putative integral membrane pro... 98 8e-20
gb|AAC64261.1| (AF052056) unknown [Campylobacter jejuni] 61 8e-09
>ref|NP_206980.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||E64542 hypothetical protein HP0181 - Helicobacter pylori (strain 26695)
gb|AAD07253.1| (AE000538) H. pylori predicted coding region HP0181 [Helicobacter
pylori 26695]
Length = 224
Score = 439 bits (1128), Expect = e-122
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 1 MVVVAFGIRGFYHGFVSEVAGTLGIVLGVYLASRYSVAVGNLFSEHLYDLRNETMTNLIG 60
MVVVAFGIRGFYHGFVSEVAGTLGIVLGVYLASRYSVAVGNLFSEHLYDLRNETMTNLIG
Sbjct: 1 MVVVAFGIRGFYHGFVSEVAGTLGIVLGVYLASRYSVAVGNLFSEHLYDLRNETMTNLIG 60
Query: 61 FLLVLASIWVFFLAFGVLLGKVLVFSGLGIIDKALGFIFSCLKTFLVLSFILYALSKMEV 120
FLLVLASIWVFFLAFGVLLGKVLVFSGLGIIDKALGFIFSCLKTFLVLSFILYALSKMEV
Sbjct: 61 FLLVLASIWVFFLAFGVLLGKVLVFSGLGIIDKALGFIFSCLKTFLVLSFILYALSKMEV 120
Query: 121 MKDANAYLQEKSAFFSTMKSVASKIMRLDGVKHVEQNLKDNLEEMSDEVKNKESFNKNKE 180
MKDANAYLQEKSAFFSTMKSVASKIMRLDGVKHVEQNLKDNLEEMSDEVKNKESFNKNKE
Sbjct: 121 MKDANAYLQEKSAFFSTMKSVASKIMRLDGVKHVEQNLKDNLEEMSDEVKNKESFNKNKE 180
Query: 181 SFNKAMDKGVESLKEKAKDLPKNMLDPKANQTPPNPTPSNKEPL 224
SFNKAMDKGVESLKEKAKDLPKNMLDPKANQTPPNPTPSNKEPL
Sbjct: 181 SFNKAMDKGVESLKEKAKDLPKNMLDPKANQTPPNPTPSNKEPL 224
>ref|NP_222890.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71965 hypothetical protein jhp0169 - Helicobacter pylori (strain J99)
gb|AAD05750.1| (AE001455) putative [Helicobacter pylori J99]
Length = 236
Score = 395 bits (1015), Expect = e-109
Identities = 204/227 (89%), Positives = 213/227 (92%), Gaps = 3/227 (1%)
Query: 1 MVVVAFGIRGFYHGFVSEVAGTLGIVLGVYLASRYSVAVGNLFSEHLYDLRNETMTNLIG 60
+VVVAFGIRGFYHGFVSE+A TLGIVLGVYLASRYSVAVGNLFSEHLYDLRNETMTNLIG
Sbjct: 10 VVVVAFGIRGFYHGFVSEIAATLGIVLGVYLASRYSVAVGNLFSEHLYDLRNETMTNLIG 69
Query: 61 FLLVLASIWVFFLAFGVLLGKVLVFSGLGIIDKALGFIFSCLKTFLVLSFILYALSKMEV 120
FLLVLASIWVFFLA GVLLGK+LVFSGLGIIDKALGFIFSCLKTFLVLSFILYALSKM++
Sbjct: 70 FLLVLASIWVFFLALGVLLGKMLVFSGLGIIDKALGFIFSCLKTFLVLSFILYALSKMDL 129
Query: 121 MKDANAYLQEKSAFFSTMKSVASKIMRLDGVKHVEQNLKDNLEEMSDEVKNKESFNKNKE 180
MKDANAYLQEKSA F TMKSVASKIMRLDGVKHVE+NLKDNLEEMSDEVKNK S + KE
Sbjct: 130 MKDANAYLQEKSAIFPTMKSVASKIMRLDGVKHVEKNLKDNLEEMSDEVKNKGSIDNAKE 189
Query: 181 SFNKAMDKGVESLKEKAKDLPKNMLDP---KANQTPPNPTPSNKEPL 224
SFNKA DKGVE+LKEKAKDLPKNML+P K NQTPP PTPSNKEPL
Sbjct: 190 SFNKATDKGVEALKEKAKDLPKNMLEPKHNKPNQTPPIPTPSNKEPL 236
>ref|NP_281589.1| (NC_002163) putative integral membrane protein [Campylobacter
jejuni]
pir||E81383 probable integral membrane protein Cj0399 [imported] -
Campylobacter jejuni (strain NCTC 11168)
emb|CAB74235.1| (AL139075) putative integral membrane protein [Campylobacter
jejuni]
Length = 187
Score = 97.8 bits (242), Expect = 8e-20
Identities = 46/170 (27%), Positives = 90/170 (52%), Gaps = 4/170 (2%)
Query: 7 GIRGFYHGFVSEVAGTLGIVLGVYLASRYSVAVGNLFSEHLYDLRNETMTNLIGFLLVLA 66
G++G +G + E+ G LGI+ GV++AS+Y+ Y + N+++ GFL +L
Sbjct: 18 GLKGIINGLIKEIFGLLGIIGGVFIASKYATQAAEFIQSTFYKIENQSLAGFAGFLAILI 77
Query: 67 SIWVFFLAFGVLLGKVLVFSGLGIIDKALGFIFSCLKTFLVLSFILYALSKMEVMKDANA 126
W+ L G L K++ SGLG +D+ GFIF K FL+ + +++ +++++ + D
Sbjct: 78 IFWIACLLAGNFLSKLIKLSGLGFLDRIGGFIFGGAKIFLIFAILVFCVARIDFLNDKLD 137
Query: 127 YLQEKSAFFSTMKSVASKIMRL----DGVKHVEQNLKDNLEEMSDEVKNK 172
+ S + +K S IM + + H + L+D + ++++ K +
Sbjct: 138 NFAKNSYTLNLLKETGSFIMNQPLTENSLDHASEKLQDIVSDLNNTQKGE 187
>gb|AAC64261.1| (AF052056) unknown [Campylobacter jejuni]
Length = 123
Score = 61.2 bits (147), Expect = 8e-09
Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 54 TMTNLIGFLLVLASIWVFFLAFGVLLGKVLVFSGLGIIDKALGFIFSCLKTFLVLSFILY 113
++ GFL +L W+ L G L K++ SGLG +D+ GFIF K FL+ + +++
Sbjct: 1 SLAGFAGFLAILIIFWIACLLAGNFLSKLIKLSGLGFLDRIGGFIFGGAKIFLIFAILVF 60
Query: 114 ALSKMEVMKDANAYLQEKSAFFSTMKSVASKIMRL----DGVKHVEQNLKDNLEEMSDEV 169
+++++ + D + S + +K S IM + + H + L+D + ++++
Sbjct: 61 CVARIDFLNDKLDNFAKNSYTLNLLKETGSFIMNQPLTENSLDHASEKLQDIVSDLNNTQ 120
Query: 170 KNK 172
K +
Sbjct: 121 KGE 123
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.137 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,151,971
Number of Sequences: 1026957
Number of extensions: 5612341
Number of successful extensions: 33868
Number of sequences better than 1.0e-02: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33861
Number of HSP's gapped (non-prelim): 4
length of query: 224
length of database: 324,149,939
effective HSP length: 117
effective length of query: 107
effective length of database: 203,995,970
effective search space: 21827568790
effective search space used: 21827568790
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 95 (41.2 bits)