BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644651|ref|NP_206820.1| hypothetical protein
[Helicobacter pylori 26695]
(469 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206820.1| (NC_000915) hypothetical protein [Helicoba... 927 0.0
ref|NP_222738.1| (NC_000921) putative [Helicobacter pylori ... 917 0.0
ref|NP_281300.1| (NC_002163) putative lipoprotein [Campylob... 154 2e-36
ref|NP_231530.1| (NC_002505) hypothetical protein [Vibrio c... 54 5e-06
>ref|NP_206820.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||B64522 hypothetical protein HP0018 - Helicobacter pylori (strain 26695)
gb|AAD07093.1| (AE000524) H. pylori predicted coding region HP0018 [Helicobacter
pylori 26695]
Length = 469
Score = 927 bits (2397), Expect = 0.0
Identities = 469/469 (100%), Positives = 469/469 (100%)
Query: 1 MKIFVLLMSVILGISLTGCIGYRMDLEHFNTLYYEESPKKAYEYSKQFTKKKKNALLWDL 60
MKIFVLLMSVILGISLTGCIGYRMDLEHFNTLYYEESPKKAYEYSKQFTKKKKNALLWDL
Sbjct: 1 MKIFVLLMSVILGISLTGCIGYRMDLEHFNTLYYEESPKKAYEYSKQFTKKKKNALLWDL 60
Query: 61 QNGLSALYARDYQTSLGVLDQAEQRFDKTQSAFTRGAGYVGATMINDNVRAYGGNIYEGV 120
QNGLSALYARDYQTSLGVLDQAEQRFDKTQSAFTRGAGYVGATMINDNVRAYGGNIYEGV
Sbjct: 61 QNGLSALYARDYQTSLGVLDQAEQRFDKTQSAFTRGAGYVGATMINDNVRAYGGNIYEGV 120
Query: 121 LINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAIKEIDSSKKHNINMER 180
LINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAIKEIDSSKKHNINMER
Sbjct: 121 LINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAIKEIDSSKKHNINMER 180
Query: 181 SRVEVSEILNNTYSNLDKYEAYQGLLNPAVSYLSGLFYALNGDENKGLGYLNEAYGISQS 240
SRVEVSEILNNTYSNLDKYEAYQGLLNPAVSYLSGLFYALNGDENKGLGYLNEAYGISQS
Sbjct: 181 SRVEVSEILNNTYSNLDKYEAYQGLLNPAVSYLSGLFYALNGDENKGLGYLNEAYGISQS 240
Query: 241 PFVAQDLVFFKNPNRSHFTWIIIEDGKEPQKSEFKIDVPIFMIDSVYNVSIALPKLEKGE 300
PFVAQDLVFFKNPNRSHFTWIIIEDGKEPQKSEFKIDVPIFMIDSVYNVSIALPKLEKGE
Sbjct: 241 PFVAQDLVFFKNPNRSHFTWIIIEDGKEPQKSEFKIDVPIFMIDSVYNVSIALPKLEKGE 300
Query: 301 AFYQNFTLKDGEKVTPFDTLASIDAVVASEFRKQLPYIITRAILSATFKVGMQAVANYYL 360
AFYQNFTLKDGEKVTPFDTLASIDAVVASEFRKQLPYIITRAILSATFKVGMQAVANYYL
Sbjct: 301 AFYQNFTLKDGEKVTPFDTLASIDAVVASEFRKQLPYIITRAILSATFKVGMQAVANYYL 360
Query: 361 GFVGGLVTSLYSGVSTFADTRSTSIFAHKIYLMRIKNKAFESYEVRADSIDAFSFSLKPC 420
GFVGGLVTSLYSGVSTFADTRSTSIFAHKIYLMRIKNKAFESYEVRADSIDAFSFSLKPC
Sbjct: 361 GFVGGLVTSLYSGVSTFADTRSTSIFAHKIYLMRIKNKAFESYEVRADSIDAFSFSLKPC 420
Query: 421 KRSLESPKIIDARELLSGFVAAPQIFCSNRHNILYVRSFKNGFVLSRLK 469
KRSLESPKIIDARELLSGFVAAPQIFCSNRHNILYVRSFKNGFVLSRLK
Sbjct: 421 KRSLESPKIIDARELLSGFVAAPQIFCSNRHNILYVRSFKNGFVLSRLK 469
>ref|NP_222738.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71984 hypothetical protein jhp0016 - Helicobacter pylori (strain J99)
gb|AAD05598.1| (AE001441) putative [Helicobacter pylori J99]
Length = 469
Score = 917 bits (2371), Expect = 0.0
Identities = 461/469 (98%), Positives = 466/469 (99%)
Query: 1 MKIFVLLMSVILGISLTGCIGYRMDLEHFNTLYYEESPKKAYEYSKQFTKKKKNALLWDL 60
MKIFVLLMSVILGISLTGCIGYRMDLEHFNTLYYEESPKKAYEYSKQFTKKKKNALLWDL
Sbjct: 1 MKIFVLLMSVILGISLTGCIGYRMDLEHFNTLYYEESPKKAYEYSKQFTKKKKNALLWDL 60
Query: 61 QNGLSALYARDYQTSLGVLDQAEQRFDKTQSAFTRGAGYVGATMINDNVRAYGGNIYEGV 120
QNGLSALYARDY+TSLGVLDQAEQRFDKTQSAFTRGAGYVGATMINDNVRAYGGNIYEGV
Sbjct: 61 QNGLSALYARDYKTSLGVLDQAEQRFDKTQSAFTRGAGYVGATMINDNVRAYGGNIYEGV 120
Query: 121 LINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAIKEIDSSKKHNINMER 180
LINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAIKEIDSSKKHNINMER
Sbjct: 121 LINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAIKEIDSSKKHNINMER 180
Query: 181 SRVEVSEILNNTYSNLDKYEAYQGLLNPAVSYLSGLFYALNGDENKGLGYLNEAYGISQS 240
SR EVSEILNNTYSNLDKYEAYQGLLNPAVSYLSGLFYALNGD+NKGLGYLNEAYGISQS
Sbjct: 181 SRAEVSEILNNTYSNLDKYEAYQGLLNPAVSYLSGLFYALNGDKNKGLGYLNEAYGISQS 240
Query: 241 PFVAQDLVFFKNPNRSHFTWIIIEDGKEPQKSEFKIDVPIFMIDSVYNVSIALPKLEKGE 300
PFVAQDLVFFKNPNRSHFTWIIIEDGKEPQKSEFKIDVPIFMIDSVYNVS+ALPKLEKGE
Sbjct: 241 PFVAQDLVFFKNPNRSHFTWIIIEDGKEPQKSEFKIDVPIFMIDSVYNVSVALPKLEKGE 300
Query: 301 AFYQNFTLKDGEKVTPFDTLASIDAVVASEFRKQLPYIITRAILSATFKVGMQAVANYYL 360
AFYQNFTLKDGEKVTPFDTLASIDAVVASEFRKQLPYIITRAILSATFKVGMQAVANYYL
Sbjct: 301 AFYQNFTLKDGEKVTPFDTLASIDAVVASEFRKQLPYIITRAILSATFKVGMQAVANYYL 360
Query: 361 GFVGGLVTSLYSGVSTFADTRSTSIFAHKIYLMRIKNKAFESYEVRADSIDAFSFSLKPC 420
GFVGGLVTSLYSGVSTFADTR+TSIFAHKIYLMRIKNKAFESYEVRADSIDAFSFSLKPC
Sbjct: 361 GFVGGLVTSLYSGVSTFADTRNTSIFAHKIYLMRIKNKAFESYEVRADSIDAFSFSLKPC 420
Query: 421 KRSLESPKIIDARELLSGFVAAPQIFCSNRHNILYVRSFKNGFVLSRLK 469
KRSLESPKIIDARELLSGFV APQ+FCSNRHNILYVRSFKNGFVLS LK
Sbjct: 421 KRSLESPKIIDARELLSGFVTAPQVFCSNRHNILYVRSFKNGFVLSHLK 469
>ref|NP_281300.1| (NC_002163) putative lipoprotein [Campylobacter jejuni]
pir||A81425 probable lipoprotein Cj0089 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72573.1| (AL139074) putative lipoprotein [Campylobacter jejuni]
Length = 453
Score = 154 bits (390), Expect = 2e-36
Identities = 113/415 (27%), Positives = 206/415 (49%), Gaps = 25/415 (6%)
Query: 1 MKIFV-LLMSVILGISLTGCIGY-RMDLEHFNTLYYEESPKKAYEYSKQFTKKKKNALLW 58
MKI V L+ S I + LT C+ + + NTL + + + + KK + +
Sbjct: 1 MKIKVGLIFSGIACLFLTACVNQVKQNTTFENTLTQKYCGDDFFNQNLEKIKKNDDVIYT 60
Query: 59 DLQNGLSALYARDYQTSLGVLDQAEQRFD---KTQSAFTRGAGYVGATMINDNVRAYGGN 115
L GL A D+ S D E+ + ++ + A ++G T++NDN+ Y G+
Sbjct: 61 GLNAGLIARNCGDFNKSNVFFDAVEESYKYDVDLENVSPKAAKFIGTTLLNDNIVDYDGS 120
Query: 116 IYEGVLINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAIKEIDSSKKHN 175
+YE +++N YKA++YM +D ARV+FNR RQ +AKE++ +E++K ++D +K+
Sbjct: 121 LYERIMVNIYKALNYMEEDDYENARVEFNRVLMRQDKAKEYFAKEIEKNRADLDKAKEDK 180
Query: 176 INMERSRVEVSEILNNTYSNLDK-YEAYQGLLNPAVSYLSGLFYALNGDENKGLGYLNE- 233
N +++ E S+++ Y NL K ++ + +NP +YL+ +F+ ++ D K E
Sbjct: 181 -NYDKNMNENSKVIEAQYDNLFKEFDTTKNFINPYATYLASIFFFMDKDYRKAADLFREV 239
Query: 234 AYGISQSPFVAQDLVFFKN-------PNRSHFTWIIIEDGKEPQKSEFKIDVPIFMIDSV 286
A ++ + ++ FK + +++ E+G K EF + +P + +
Sbjct: 240 AIIYPKNKTIKKEAKIFKEYATKIKVKKAKKYVFVVYENGFGVVKDEFALTLPFIVDKKI 299
Query: 287 YNVSIALPKLEKGEAFYQNFTLKDGEKVTPFDTLASIDAVVASEFRKQLPYIITRAILSA 346
+ +IAL L+K EA + N + +G+ F +D +VA+EF+ +P +I +A+
Sbjct: 300 ISTNIALQTLKKREASFANLNI-NGQNTNDF---VDLDNIVATEFKINMPAMIAKALAQT 355
Query: 347 TFKVGMQ-AVANYYLGFVGG---LVTSLYSGVSTFADTRSTSIFAHKIYLMRIKN 397
K + AVAN GG L T++ + + AD RS I + I+N
Sbjct: 356 IIKTTLNVAVANN--DSTGGWLSLATAVATAATNKADVRSWRGLPKSIAIATIEN 408
>ref|NP_231530.1| (NC_002505) hypothetical protein [Vibrio cholerae]
pir||F82143 hypothetical protein VC1896 [imported] - Vibrio cholerae (group O1
strain N16961)
gb|AAF95044.1| (AE004265) hypothetical protein [Vibrio cholerae]
Length = 472
Score = 53.5 bits (127), Expect = 5e-06
Identities = 83/346 (23%), Positives = 138/346 (38%), Gaps = 44/346 (12%)
Query: 64 LSALYARDYQTSLGVLDQA-EQRFDKTQSAFTRGAGYVGATMINDNVRAYGGNIYEGVLI 122
LS YA Q SL D A +Q+ D+ + + A VG+ +NDN+ Y YE +
Sbjct: 84 LSQQYAESQQ-SLAAADLAVKQQQDRAIISVSSTATSVGSLAVNDNLNEYEPADYELGFL 142
Query: 123 NYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAIKEIDSSKKHNINMERSR 182
+ Y ++Y+ ND A V+ RAN+ Q AK+ + + A +E+ S
Sbjct: 143 HLYLGLNYVRNNDLDGALVEMRRANQVQEAAKKRREQALSSAEQEMRSQ----------- 191
Query: 183 VEVSEILNNTYSNL-DKYEAYQGLLNPAVSYLSGLFYALNGDENKGLGYLNEAYGIS-QS 240
+S L + + D + Q + N + YLS L Y + D N A ++ +
Sbjct: 192 -GLSPNLGSVLAQYPDAGKTLQAVQNGYLLYLSALLYEADNDLNSAYVDYRRALAVAPNN 250
Query: 241 PFV-------------AQDLVFFK----NPNR----SHFTWIIIEDGKEPQKSEFKIDVP 279
P V QDL K P R +I E G K +++ +P
Sbjct: 251 PSVIDGTLRVASRLGMQQDLKLLKQQYGEPKRLTSAQGRVIVIEEQGIVQPKQAWRLSLP 310
Query: 280 IFMIDSVYNV---SIALPKLEKGEAFYQNFTLKDGEKVTPFDTLASIDAVVASEFRKQLP 336
+ DS N S+ALP A + +G + + +D + +Q+P
Sbjct: 311 --LSDSRGNTALYSLALPYYSSSVAQSRVPISLNGASLASM-PVTDVDLMAKQALTEQMP 367
Query: 337 YIITRAILSATFKVGMQAVANYYLGFVGGLVTSLYSGVSTFADTRS 382
++ R L K ++ V LV ++++ ++ DTRS
Sbjct: 368 ALVLRQALRVVAKDQLRKETTQEED-VANLVFNIWNTLTEQPDTRS 412
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.136 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 280,559,911
Number of Sequences: 1026957
Number of extensions: 11763421
Number of successful extensions: 31438
Number of sequences better than 1.0e-02: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31429
Number of HSP's gapped (non-prelim): 4
length of query: 469
length of database: 324,149,939
effective HSP length: 125
effective length of query: 344
effective length of database: 195,780,314
effective search space: 67348428016
effective search space used: 67348428016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 99 (42.7 bits)