BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644813|ref|NP_206983.1| hypothetical protein
[Helicobacter pylori 26695]
         (180 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_206983.1|  (NC_000915) hypothetical protein [Helicoba...   375  e-103
ref|NP_222893.1|  (NC_000921) putative [Helicobacter pylori ...   371  e-102
ref|NP_281593.1|  (NC_002163) hypothetical protein Cj0403 [C...   230  5e-60

>ref|NP_206983.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||H64542 hypothetical protein HP0184 - Helicobacter pylori (strain 26695)
 gb|AAD07254.1| (AE000538) H. pylori predicted coding region HP0184 [Helicobacter
           pylori 26695]
          Length = 180

 Score =  375 bits (962), Expect = e-103
 Identities = 180/180 (100%), Positives = 180/180 (100%)

Query: 1   MTEMELKLIKIDTSHYFEKKPGLGERVDYAGRCFYNKFQRVNAMLTSSLIQKHLKREIEI 60
           MTEMELKLIKIDTSHYFEKKPGLGERVDYAGRCFYNKFQRVNAMLTSSLIQKHLKREIEI
Sbjct: 1   MTEMELKLIKIDTSHYFEKKPGLGERVDYAGRCFYNKFQRVNAMLTSSLIQKHLKREIEI 60

Query: 61  AHNLILRNDKVENIVFDYNGRNPERFYHKAQLLLREEGFMNFTAYNTKTPGHLHLYVHKG 120
           AHNLILRNDKVENIVFDYNGRNPERFYHKAQLLLREEGFMNFTAYNTKTPGHLHLYVHKG
Sbjct: 61  AHNLILRNDKVENIVFDYNGRNPERFYHKAQLLLREEGFMNFTAYNTKTPGHLHLYVHKG 120

Query: 121 HTELGEGERLVKTLSMKLAQGLPKEWKVFPSNEWPKEFNILALPYEVFAKERGSSWAKHL 180
           HTELGEGERLVKTLSMKLAQGLPKEWKVFPSNEWPKEFNILALPYEVFAKERGSSWAKHL
Sbjct: 121 HTELGEGERLVKTLSMKLAQGLPKEWKVFPSNEWPKEFNILALPYEVFAKERGSSWAKHL 180



>ref|NP_222893.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||H71965 hypothetical protein jhp0172 - Helicobacter pylori (strain J99)
 gb|AAD05753.1| (AE001455) putative [Helicobacter pylori J99]
          Length = 180

 Score =  371 bits (952), Expect = e-102
 Identities = 176/180 (97%), Positives = 180/180 (99%)

Query: 1   MTEMELKLIKIDTSHYFEKKPGLGERVDYAGRCFYNKFQRVNAMLTSSLIQKHLKREIEI 60
           MTEMELKLIKIDTSHYFEKKPGLGER+DYAGRC+YNKFQRVNAMLTSSLIQKHLKREIEI
Sbjct: 1   MTEMELKLIKIDTSHYFEKKPGLGERMDYAGRCYYNKFQRVNAMLTSSLIQKHLKREIEI 60

Query: 61  AHNLILRNDKVENIVFDYNGRNPERFYHKAQLLLREEGFMNFTAYNTKTPGHLHLYVHKG 120
           AHNLILRNDKVENIVFDYNGRNPERFYHKAQLLLREEGFMNFTAYNTKTPGHLHLYVHKG
Sbjct: 61  AHNLILRNDKVENIVFDYNGRNPERFYHKAQLLLREEGFMNFTAYNTKTPGHLHLYVHKG 120

Query: 121 HTELGEGERLVKTLSMKLAQGLPKEWKVFPSNEWPKEFNILALPYEVFAKERGSSWAKHL 180
           HTELGEGERL+KTLSMKLAQGLPKEW+VFPSNEWPKEFNILALPYEVFAKERGSSWAKHL
Sbjct: 121 HTELGEGERLIKTLSMKLAQGLPKEWRVFPSNEWPKEFNILALPYEVFAKERGSSWAKHL 180



>ref|NP_281593.1| (NC_002163) hypothetical protein Cj0403 [Campylobacter jejuni]
 pir||A81384 hypothetical protein Cj0403 [imported] - Campylobacter jejuni
           (strain NCTC 11168)
 emb|CAB74239.1| (AL139075) hypothetical protein Cj0403 [Campylobacter jejuni]
          Length = 181

 Score =  230 bits (587), Expect = 5e-60
 Identities = 104/180 (57%), Positives = 141/180 (77%)

Query: 1   MTEMELKLIKIDTSHYFEKKPGLGERVDYAGRCFYNKFQRVNAMLTSSLIQKHLKREIEI 60
           ++ M++ LIKI   HY+ ++  +  ++ + GR F++KF+RV+A L  +++++H  ++I +
Sbjct: 2   ISPMDMSLIKIIGDHYYIRRDKIVNKITHRGRLFFDKFERVDAPLNLNVMREHAAKKIVV 61

Query: 61  AHNLILRNDKVENIVFDYNGRNPERFYHKAQLLLREEGFMNFTAYNTKTPGHLHLYVHKG 120
           AH+LI +++KVENIVFDYNG N ERFYH+AQL+LREEGF+NFTAY TKTPGHLHLY+HKG
Sbjct: 62  AHDLITKDNKVENIVFDYNGFNAERFYHRAQLILREEGFINFTAYKTKTPGHLHLYIHKG 121

Query: 121 HTELGEGERLVKTLSMKLAQGLPKEWKVFPSNEWPKEFNILALPYEVFAKERGSSWAKHL 180
           HT L EG  L   LSM  A  +P EWKVFPS + P+EFNIL LPYEV+ KERGSSW+KH+
Sbjct: 122 HTALNEGYSLASKLSMMFASKMPVEWKVFPSMDVPREFNILILPYEVYQKERGSSWSKHM 181



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.320    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,629,527
Number of Sequences: 1026957
Number of extensions: 5057636
Number of successful extensions: 11154
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11151
Number of HSP's gapped (non-prelim): 3
length of query: 180
length of database: 324,149,939
effective HSP length: 113
effective length of query: 67
effective length of database: 208,103,798
effective search space: 13942954466
effective search space used: 13942954466
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 93 (40.4 bits)