BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644815|ref|NP_206985.1| hypothetical protein
[Helicobacter pylori 26695]
         (404 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_206985.1|  (NC_000915) hypothetical protein [Helicoba...   808  0.0
ref|NP_222895.1|  (NC_000921) putative [Helicobacter pylori ...   673  0.0

>ref|NP_206985.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||B64543 hypothetical protein HP0186 - Helicobacter pylori (strain 26695)
 gb|AAD07264.1| (AE000539) H. pylori predicted coding region HP0186 [Helicobacter
           pylori 26695]
          Length = 404

 Score =  808 bits (2087), Expect = 0.0
 Identities = 404/404 (100%), Positives = 404/404 (100%)

Query: 1   MSEEEVNERLEVLLEMVLMRFEEPDPGRAIRTFQSVNDRGVPLLLLDKLKSLLIYYSNIF 60
           MSEEEVNERLEVLLEMVLMRFEEPDPGRAIRTFQSVNDRGVPLLLLDKLKSLLIYYSNIF
Sbjct: 1   MSEEEVNERLEVLLEMVLMRFEEPDPGRAIRTFQSVNDRGVPLLLLDKLKSLLIYYSNIF 60

Query: 61  CDGKRGLDQFIIDHFGEIFKIFAKIKKSDHISSVGGFDEGDIFRYHAGSQKFDGIEFLGH 120
           CDGKRGLDQFIIDHFGEIFKIFAKIKKSDHISSVGGFDEGDIFRYHAGSQKFDGIEFLGH
Sbjct: 61  CDGKRGLDQFIIDHFGEIFKIFAKIKKSDHISSVGGFDEGDIFRYHAGSQKFDGIEFLGH 120

Query: 121 YEASTDKTYEKLKDELKKIKKSKLKSFIQSYVSDLKNFYQAFLDLLSEIDTNPTTFKVML 180
           YEASTDKTYEKLKDELKKIKKSKLKSFIQSYVSDLKNFYQAFLDLLSEIDTNPTTFKVML
Sbjct: 121 YEASTDKTYEKLKDELKKIKKSKLKSFIQSYVSDLKNFYQAFLDLLSEIDTNPTTFKVML 180

Query: 181 INKIDSSFFNSLIRLKINNELDDETLKLFAKTDIVLFKATRDRPGTDNLINAYLKKGKEG 240
           INKIDSSFFNSLIRLKINNELDDETLKLFAKTDIVLFKATRDRPGTDNLINAYLKKGKEG
Sbjct: 181 INKIDSSFFNSLIRLKINNELDDETLKLFAKTDIVLFKATRDRPGTDNLINAYLKKGKEG 240

Query: 241 LKSEMIAQCRNDIGLAFWQSVNNASNSSCFHYIFFEKNCQEMGLADLKKLIPRKQFSQEK 300
           LKSEMIAQCRNDIGLAFWQSVNNASNSSCFHYIFFEKNCQEMGLADLKKLIPRKQFSQEK
Sbjct: 241 LKSEMIAQCRNDIGLAFWQSVNNASNSSCFHYIFFEKNCQEMGLADLKKLIPRKQFSQEK 300

Query: 301 EHIIPINLLKQESNNKIRDLGFEDKKDLEDYIDTYGNLISLEKSLNRKASDKDLYGKDEI 360
           EHIIPINLLKQESNNKIRDLGFEDKKDLEDYIDTYGNLISLEKSLNRKASDKDLYGKDEI
Sbjct: 301 EHIIPINLLKQESNNKIRDLGFEDKKDLEDYIDTYGNLISLEKSLNRKASDKDLYGKDEI 360

Query: 361 YKSSEIPFNRRFDTKNFNKKALVKRNEEMREWLIDTFFKDFAAH 404
           YKSSEIPFNRRFDTKNFNKKALVKRNEEMREWLIDTFFKDFAAH
Sbjct: 361 YKSSEIPFNRRFDTKNFNKKALVKRNEEMREWLIDTFFKDFAAH 404



>ref|NP_222895.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||C71963 hypothetical protein jhp0174 - Helicobacter pylori (strain J99)
 gb|AAD05767.1| (AE001456) putative [Helicobacter pylori J99]
          Length = 567

 Score =  673 bits (1736), Expect = 0.0
 Identities = 344/407 (84%), Positives = 365/407 (89%), Gaps = 3/407 (0%)

Query: 1   MSEEEVNERLEVLLEMVLMRFEEPDPGRAIRTFQSVNDRGVPLLLLDKLKSLLIYYSNIF 60
           +SEEEVNERLEVLL+MVLMR EEPDPG+AIRTFQSVNDRGVPLLLLDKLKSLLIYYSN F
Sbjct: 161 LSEEEVNERLEVLLKMVLMRLEEPDPGKAIRTFQSVNDRGVPLLLLDKLKSLLIYYSNTF 220

Query: 61  CDGKRGLDQFIIDHFGEIFKIFAKIKKSDHISSVGG--FDEGDIFRYHAGSQKFDGIEFL 118
           CDGKRGLDQFIIDHFGEIFKIFAKIKKS+HISSVGG  F+EGDIFRYHAGSQ+FDGIEFL
Sbjct: 221 CDGKRGLDQFIIDHFGEIFKIFAKIKKSNHISSVGGPEFNEGDIFRYHAGSQRFDGIEFL 280

Query: 119 GHYEASTDKTYEKLKDELKKIKKSKLKSFIQSYVSDLKNFYQAFLDLLSEIDTNPTTFKV 178
           GHY  STD TYEKLK ELK+IKKSKLKSFIQSYVSDLKNFYQAFLDLLSEIDTNPTT KV
Sbjct: 281 GHYRTSTDNTYEKLKAELKEIKKSKLKSFIQSYVSDLKNFYQAFLDLLSEIDTNPTTLKV 340

Query: 179 MLINKIDSSFFNSLIRLKINNELDDETLKLFAKTDIVLFKATRD-RPGTDNLINAYLKKG 237
           MLIN+I+  FFNSLIRLKINNELDDETLKLFAKTDIV FK+TR  +    NLINAYL+KG
Sbjct: 341 MLINRINPLFFNSLIRLKINNELDDETLKLFAKTDIVCFKSTRYMQSAAYNLINAYLRKG 400

Query: 238 KEGLKSEMIAQCRNDIGLAFWQSVNNASNSSCFHYIFFEKNCQEMGLADLKKLIPRKQFS 297
           KEGLKS MIAQCRNDI LAF QSVN A NSSCFHYIFFEKNCQEMGLADLKKLIP KQFS
Sbjct: 401 KEGLKSGMIAQCRNDIELAFRQSVNEAFNSSCFHYIFFEKNCQEMGLADLKKLIPGKQFS 460

Query: 298 QEKEHIIPINLLKQESNNKIRDLGFEDKKDLEDYIDTYGNLISLEKSLNRKASDKDLYGK 357
           QEKEHIIPINLL  ++  +I+ LGFED+KDL  YI TYGNLISLEK LN K  DKDLY K
Sbjct: 461 QEKEHIIPINLLDLDNEIEIQKLGFEDRKDLRAYIYTYGNLISLEKPLNIKGKDKDLYEK 520

Query: 358 DEIYKSSEIPFNRRFDTKNFNKKALVKRNEEMREWLIDTFFKDFAAH 404
           DEIYKSSEIPFNRRF+ K FNKK L+ RN+EM+EWLIDTFFKDFA H
Sbjct: 521 DEIYKSSEIPFNRRFNVKGFNKKVLITRNDEMQEWLIDTFFKDFATH 567



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.319    0.139    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 251,957,172
Number of Sequences: 1026957
Number of extensions: 10962069
Number of successful extensions: 33949
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33945
Number of HSP's gapped (non-prelim): 2
length of query: 404
length of database: 324,149,939
effective HSP length: 123
effective length of query: 281
effective length of database: 197,834,228
effective search space: 55591418068
effective search space used: 55591418068
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 98 (42.4 bits)