BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644816|ref|NP_206986.1| hypothetical protein
[Helicobacter pylori 26695]
(95 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206986.1| (NC_000915) hypothetical protein [Helicoba... 188 1e-47
ref|NP_222895.1| (NC_000921) putative [Helicobacter pylori ... 139 6e-33
ref|NP_563071.1| (NC_003366) conserved hypothetical protein... 44 5e-04
>ref|NP_206986.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64543 hypothetical protein HP0187 - Helicobacter pylori (strain 26695)
gb|AAD07265.1| (AE000539) H. pylori predicted coding region HP0187 [Helicobacter
pylori 26695]
Length = 95
Score = 188 bits (477), Expect = 1e-47
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MVVAKNEDNKKLYDIIDGQQRTTTIFMLLHVLANKQNEKDKQETRKYLYQKGELKLEVAP 60
MVVAKNEDNKKLYDIIDGQQRTTTIFMLLHVLANKQNEKDKQETRKYLYQKGELKLEVAP
Sbjct: 1 MVVAKNEDNKKLYDIIDGQQRTTTIFMLLHVLANKQNEKDKQETRKYLYQKGELKLEVAP 60
Query: 61 KNQSFFKTLLEAAEKENISQKKMQTPRASKIFLKF 95
KNQSFFKTLLEAAEKENISQKKMQTPRASKIFLKF
Sbjct: 61 KNQSFFKTLLEAAEKENISQKKMQTPRASKIFLKF 95
>ref|NP_222895.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71963 hypothetical protein jhp0174 - Helicobacter pylori (strain J99)
gb|AAD05767.1| (AE001456) putative [Helicobacter pylori J99]
Length = 567
Score = 139 bits (350), Expect = 6e-33
Identities = 73/94 (77%), Positives = 79/94 (83%), Gaps = 2/94 (2%)
Query: 1 MVVAKNEDNKKLYDIIDGQQRTTTIFMLLHVLANKQNEKDKQETRKYLYQKGELKLEVAP 60
MVVAKNEDNKKLYDIIDGQQRTTTIFMLLHVL +KQ E+DK+ETRKYLYQKGELKLEVA
Sbjct: 55 MVVAKNEDNKKLYDIIDGQQRTTTIFMLLHVLVSKQYEEDKRETRKYLYQKGELKLEVAS 114
Query: 61 KNQSFFKTLLEAAEKENIS--QKKMQTPRASKIF 92
+NQSFFKTLLE AEK NIS +K T +F
Sbjct: 115 QNQSFFKTLLEVAEKGNISHCEKDADTEGKQNLF 148
>ref|NP_563071.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB81861.1| (AP003193) conserved hypothetical protein [Clostridium perfringens]
Length = 584
Score = 43.5 bits (101), Expect = 5e-04
Identities = 29/104 (27%), Positives = 51/104 (48%), Gaps = 18/104 (17%)
Query: 7 EDNKKLYDIIDGQQRTTTIFMLLHVLANK-QNEKDKQETRKYLYQ--------KGELKLE 57
+D +YD+IDGQQR T+I ML+ + + NE+ K+ +YQ K ++++
Sbjct: 84 DDGCGIYDVIDGQQRLTSIIMLIAAIRDLIDNEEYKKVLSDLIYQKPNVLMGIKESIRVK 143
Query: 58 VAPKNQSFFK---------TLLEAAEKENISQKKMQTPRASKIF 92
K + FFK L++ + E +S+ K A ++F
Sbjct: 144 ARGKEEEFFKKYILTNGGTELVKDLDMEELSEAKQNMVNAIEVF 187
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.314 0.130 0.340
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,937,188
Number of Sequences: 1026957
Number of extensions: 1749785
Number of successful extensions: 4760
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4758
Number of HSP's gapped (non-prelim): 3
length of query: 95
length of database: 324,149,939
effective HSP length: 71
effective length of query: 24
effective length of database: 251,235,992
effective search space: 6029663808
effective search space used: 6029663808
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 90 (39.3 bits)