BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644828|ref|NP_206998.1| hypothetical protein
[Helicobacter pylori 26695]
(118 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206998.1| (NC_000915) hypothetical protein [Helicoba... 235 8e-62
ref|NP_222906.1| (NC_000921) putative [Helicobacter pylori ... 228 7e-60
ref|NP_281522.1| (NC_002163) hypothetical protein Cj0331c [... 68 2e-11
gb|AAK85133.1| (AY040869) cyclooxygenase-like protein [Caps... 39 0.008
>ref|NP_206998.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64544 hypothetical protein HP0199 - Helicobacter pylori (strain 26695)
gb|AAD07273.1| (AE000540) H. pylori predicted coding region HP0199 [Helicobacter
pylori 26695]
Length = 118
Score = 235 bits (599), Expect = 8e-62
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MQFEMRKIAFNAPKAFSLEHEGVVLEGEVVRVGAKLFRLEACLKGELMLICDTSGKEFKK 60
MQFEMRKIAFNAPKAFSLEHEGVVLEGEVVRVGAKLFRLEACLKGELMLICDTSGKEFKK
Sbjct: 1 MQFEMRKIAFNAPKAFSLEHEGVVLEGEVVRVGAKLFRLEACLKGELMLICDTSGKEFKK 60
Query: 61 SLDESLVLHISDGLWDTQSQSLDFDNLDVIESFNGFIDLSEILRSEVESIKLDYHYAD 118
SLDESLVLHISDGLWDTQSQSLDFDNLDVIESFNGFIDLSEILRSEVESIKLDYHYAD
Sbjct: 61 SLDESLVLHISDGLWDTQSQSLDFDNLDVIESFNGFIDLSEILRSEVESIKLDYHYAD 118
>ref|NP_222906.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71964 hypothetical protein jhp0185 - Helicobacter pylori (strain J99)
gb|AAD05757.1| (AE001456) putative [Helicobacter pylori J99]
Length = 118
Score = 228 bits (582), Expect = 7e-60
Identities = 115/118 (97%), Positives = 117/118 (98%)
Query: 1 MQFEMRKIAFNAPKAFSLEHEGVVLEGEVVRVGAKLFRLEACLKGELMLICDTSGKEFKK 60
MQFEMRKIAFNAPKAFSLEHEGVVLEGE+VRVGAKLFRL+A LKGELMLICDTSGKEFKK
Sbjct: 1 MQFEMRKIAFNAPKAFSLEHEGVVLEGEIVRVGAKLFRLKARLKGELMLICDTSGKEFKK 60
Query: 61 SLDESLVLHISDGLWDTQSQSLDFDNLDVIESFNGFIDLSEILRSEVESIKLDYHYAD 118
SLDESLVLHISDGLWDTQSQSLDFDNLDVIESFNGFIDLSEILRSEVESIKLDYHYAD
Sbjct: 61 SLDESLVLHISDGLWDTQSQSLDFDNLDVIESFNGFIDLSEILRSEVESIKLDYHYAD 118
>ref|NP_281522.1| (NC_002163) hypothetical protein Cj0331c [Campylobacter jejuni]
pir||G81452 hypothetical protein Cj0331c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72798.1| (AL139074) hypothetical protein Cj0331c [Campylobacter jejuni]
Length = 117
Score = 68.2 bits (165), Expect = 2e-11
Identities = 35/101 (34%), Positives = 58/101 (56%), Gaps = 4/101 (3%)
Query: 16 FSLEHEGVVLEGEVVRVGAKLFRLEACLKGELMLICDTSGKEFKKSLDESLVLHISDGLW 75
F L E ++ EG +V++ KL ++ A ++G + CD+ G E + + E+L L SDG++
Sbjct: 15 FKLNLENIIFEGNLVKINPKLVKINAIMQGFIYRPCDSCGTELELEIKENLELFASDGIF 74
Query: 76 DTQSQSLDFDNLDVIESFNGFIDLSEILRSEVESIKLDYHY 116
++ L + IE F+G IDL E+ SE+E+ DY Y
Sbjct: 75 KDEANELS----NTIEFFDGHIDLIEVAISELEAYLSDYFY 111
>gb|AAK85133.1| (AY040869) cyclooxygenase-like protein [Capsicum annuum]
Length = 643
Score = 39.3 bits (90), Expect = 0.008
Identities = 23/67 (34%), Positives = 32/67 (47%)
Query: 3 FEMRKIAFNAPKAFSLEHEGVVLEGEVVRVGAKLFRLEACLKGELMLICDTSGKEFKKSL 62
FE K+ +A + G ++ G+V A L L+A E L+CDT KE+ K
Sbjct: 242 FEDGKLKLSADGLLEQDENGNIISGDVRNPWAGLLALQALFIQEHNLVCDTLKKEYPKLE 301
Query: 63 DESLVLH 69
DE L H
Sbjct: 302 DEDLYRH 308
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.138 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,057,558
Number of Sequences: 1026957
Number of extensions: 2221280
Number of successful extensions: 6161
Number of sequences better than 1.0e-02: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6156
Number of HSP's gapped (non-prelim): 4
length of query: 118
length of database: 324,149,939
effective HSP length: 94
effective length of query: 24
effective length of database: 227,615,981
effective search space: 5462783544
effective search space used: 5462783544
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 90 (39.3 bits)