BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644832|ref|NP_207002.1| hypothetical protein
[Helicobacter pylori 26695]
         (91 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207002.1|  (NC_000915) hypothetical protein [Helicoba...   192  7e-49
ref|NP_222910.1|  (NC_000921) putative [Helicobacter pylori ...   158  1e-38

>ref|NP_207002.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||C64545 hypothetical protein HP0203 - Helicobacter pylori (strain 26695)
 gb|AAD07274.1| (AE000540) H. pylori predicted coding region HP0203 [Helicobacter
          pylori 26695]
          Length = 91

 Score =  192 bits (488), Expect = 7e-49
 Identities = 91/91 (100%), Positives = 91/91 (100%)

Query: 1  MKKVVFLLLVILGGLEAQSTYCSDHCEGTPDSRIPPMGFHFSFVHSVKYYLQDPQERDHK 60
          MKKVVFLLLVILGGLEAQSTYCSDHCEGTPDSRIPPMGFHFSFVHSVKYYLQDPQERDHK
Sbjct: 1  MKKVVFLLLVILGGLEAQSTYCSDHCEGTPDSRIPPMGFHFSFVHSVKYYLQDPQERDHK 60

Query: 61 LEKCHQAFDSTLKVNFITNLLKRIASMRKWL 91
          LEKCHQAFDSTLKVNFITNLLKRIASMRKWL
Sbjct: 61 LEKCHQAFDSTLKVNFITNLLKRIASMRKWL 91



>ref|NP_222910.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||D71962 hypothetical protein jhp0189 - Helicobacter pylori (strain J99)
 gb|AAD05772.1| (AE001457) putative [Helicobacter pylori J99]
          Length = 100

 Score =  158 bits (400), Expect = 1e-38
 Identities = 73/83 (87%), Positives = 77/83 (91%)

Query: 1  MKKVVFLLLVILGGLEAQSTYCSDHCEGTPDSRIPPMGFHFSFVHSVKYYLQDPQERDHK 60
          MKKVVFLLL +LGGLEA S YCSDHCEGTPDSRIPPMGFHFSFVHSVKYYLQDPQ+RDHK
Sbjct: 1  MKKVVFLLLFMLGGLEAHSDYCSDHCEGTPDSRIPPMGFHFSFVHSVKYYLQDPQKRDHK 60

Query: 61 LEKCHQAFDSTLKVNFITNLLKR 83
          LEKCH+AFDSTLKVNFIT   K+
Sbjct: 61 LEKCHKAFDSTLKVNFITKSFKK 83



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.326    0.140    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,030,893
Number of Sequences: 1026957
Number of extensions: 2091567
Number of successful extensions: 5201
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5199
Number of HSP's gapped (non-prelim): 2
length of query: 91
length of database: 324,149,939
effective HSP length: 67
effective length of query: 24
effective length of database: 255,343,820
effective search space: 6128251680
effective search space used: 6128251680
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 90 (39.3 bits)