BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644833|ref|NP_207003.1| hypothetical protein
[Helicobacter pylori 26695]
(127 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207003.1| (NC_000915) hypothetical protein [Helicoba... 258 6e-69
ref|NP_222911.1| (NC_000921) putative [Helicobacter pylori ... 255 5e-68
>ref|NP_207003.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64545 hypothetical protein HP0204 - Helicobacter pylori (strain 26695)
gb|AAD07275.1| (AE000540) H. pylori predicted coding region HP0204 [Helicobacter
pylori 26695]
Length = 127
Score = 258 bits (660), Expect = 6e-69
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MFKKMCLSLLMISGVCVGAKDLDFKLDYRATGGKLMGKMTDSSLLSITSMNDEPVVIKNL 60
MFKKMCLSLLMISGVCVGAKDLDFKLDYRATGGKLMGKMTDSSLLSITSMNDEPVVIKNL
Sbjct: 1 MFKKMCLSLLMISGVCVGAKDLDFKLDYRATGGKLMGKMTDSSLLSITSMNDEPVVIKNL 60
Query: 61 IVNRGNSCEATKKVEPKLGDKFKKEKLFDHELKYSQQIFYRLDCKPNQLLEVKIITDKGE 120
IVNRGNSCEATKKVEPKLGDKFKKEKLFDHELKYSQQIFYRLDCKPNQLLEVKIITDKGE
Sbjct: 61 IVNRGNSCEATKKVEPKLGDKFKKEKLFDHELKYSQQIFYRLDCKPNQLLEVKIITDKGE 120
Query: 121 YYHKFSK 127
YYHKFSK
Sbjct: 121 YYHKFSK 127
>ref|NP_222911.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71962 hypothetical protein jhp0190 - Helicobacter pylori (strain J99)
gb|AAD05773.1| (AE001457) putative [Helicobacter pylori J99]
Length = 127
Score = 255 bits (652), Expect = 5e-68
Identities = 125/127 (98%), Positives = 125/127 (98%)
Query: 1 MFKKMCLSLLMISGVCVGAKDLDFKLDYRATGGKLMGKMTDSSLLSITSMNDEPVVIKNL 60
MFKKMCLSLLMISGVCVGAKDLDFKLDYRATGGK MGKMTDSSLLSITSMNDEPVVIKNL
Sbjct: 1 MFKKMCLSLLMISGVCVGAKDLDFKLDYRATGGKFMGKMTDSSLLSITSMNDEPVVIKNL 60
Query: 61 IVNRGNSCEATKKVEPKLGDKFKKEKLFDHELKYSQQIFYRLDCKPNQLLEVKIITDKGE 120
IVNRGNSCEATKKVEPK GDKFKKEKLFDHELKYSQQIFYRLDCKPNQLLEVKIITDKGE
Sbjct: 61 IVNRGNSCEATKKVEPKFGDKFKKEKLFDHELKYSQQIFYRLDCKPNQLLEVKIITDKGE 120
Query: 121 YYHKFSK 127
YYHKFSK
Sbjct: 121 YYHKFSK 127
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.138 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,678,900
Number of Sequences: 1026957
Number of extensions: 2754530
Number of successful extensions: 5981
Number of sequences better than 1.0e-02: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5979
Number of HSP's gapped (non-prelim): 2
length of query: 127
length of database: 324,149,939
effective HSP length: 103
effective length of query: 24
effective length of database: 218,373,368
effective search space: 5240960832
effective search space used: 5240960832
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 90 (39.3 bits)