BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644835|ref|NP_207005.1| hypothetical protein
[Helicobacter pylori 26695]
         (108 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207005.1|  (NC_000915) hypothetical protein [Helicoba...   219  5e-57
ref|NP_222913.1|  (NC_000921) putative [Helicobacter pylori ...   147  2e-35
ref|NP_622332.1|  (NC_003869) predicted ATP-dependent endonu...    40  0.007

>ref|NP_207005.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||F64545 hypothetical protein HP0206 - Helicobacter pylori (strain 26695)
 gb|AAD07277.1| (AE000540) H. pylori predicted coding region HP0206 [Helicobacter
           pylori 26695]
          Length = 108

 Score =  219 bits (558), Expect = 5e-57
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 1   MEFYKRVLKLHHFRNLGRKSPVELPLNSSFEKHGGLVILVGENNVGKSNVLKALTIFNDA 60
           MEFYKRVLKLHHFRNLGRKSPVELPLNSSFEKHGGLVILVGENNVGKSNVLKALTIFNDA
Sbjct: 1   MEFYKRVLKLHHFRNLGRKSPVELPLNSSFEKHGGLVILVGENNVGKSNVLKALTIFNDA 60

Query: 61  DIKLCNEEDYFKPHEKDSLLSLEEETILDHKITGFSCVDLRIQSKEII 108
           DIKLCNEEDYFKPHEKDSLLSLEEETILDHKITGFSCVDLRIQSKEII
Sbjct: 61  DIKLCNEEDYFKPHEKDSLLSLEEETILDHKITGFSCVDLRIQSKEII 108



>ref|NP_222913.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||G71962 hypothetical protein jhp0192 - Helicobacter pylori (strain J99)
 gb|AAD05775.1| (AE001457) putative [Helicobacter pylori J99]
          Length = 85

 Score =  147 bits (372), Expect = 2e-35
 Identities = 73/85 (85%), Positives = 79/85 (92%), Gaps = 1/85 (1%)

Query: 1  MEFYKRVLKLHHFRNLGRKSPVELPLNSSF-EKHGGLVILVGENNVGKSNVLKALTIFND 59
          MEFYKRVLKLHHFRNLG+ SP +L LNSSF EKHGGLV+LVGENNVGKSNVL+AL IFND
Sbjct: 1  MEFYKRVLKLHHFRNLGKNSPTKLLLNSSFDEKHGGLVVLVGENNVGKSNVLEALKIFND 60

Query: 60 ADIKLCNEEDYFKPHEKDSLLSLEE 84
          ADIKLC+EEDYFK HEKD+LLSLEE
Sbjct: 61 ADIKLCSEEDYFKDHEKDTLLSLEE 85



>ref|NP_622332.1| (NC_003869) predicted ATP-dependent endonuclease of the OLD
          family [Thermoanaerobacter tengcongensis]
 gb|AAM23936.1| (AE013035) predicted ATP-dependent endonuclease of the OLD family
          [Thermoanaerobacter tengcongensis]
          Length = 575

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 38 ILVGENNVGKSNVLKALTIFNDADIKLCNEEDYFKPHEKDSLLSLEEETIL 88
          +L+G NN GK+N+L AL IF +  IK     D+ K H  D    +E E +L
Sbjct: 26 VLIGANNSGKTNILTALRIFYEDGIKFNEATDFPKFHTDDEESWIEIEYVL 76



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.319    0.140    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,269,776
Number of Sequences: 1026957
Number of extensions: 2757185
Number of successful extensions: 11794
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11790
Number of HSP's gapped (non-prelim): 3
length of query: 108
length of database: 324,149,939
effective HSP length: 84
effective length of query: 24
effective length of database: 237,885,551
effective search space: 5709253224
effective search space used: 5709253224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 90 (39.3 bits)