BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644837|ref|NP_207007.1| hypothetical protein
[Helicobacter pylori 26695]
(450 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207007.1| (NC_000915) hypothetical protein [Helicoba... 944 0.0
ref|NP_222916.1| (NC_000921) putative Outer membrane protei... 881 0.0
ref|NP_207575.1| (NC_000915) hypothetical protein [Helicoba... 325 5e-88
ref|NP_223437.1| (NC_000921) putative Outer membrane protei... 313 3e-84
ref|NP_223568.1| (NC_000921) putative Outer membrane protei... 251 1e-65
ref|NP_207706.1| (NC_000915) hypothetical protein [Helicoba... 249 5e-65
ref|NP_223443.1| (NC_000921) putative Outer membrane protei... 246 4e-64
ref|NP_207581.1| (NC_000915) hypothetical protein [Helicoba... 242 7e-63
ref|NP_207874.1| (NC_000915) hypothetical protein [Helicoba... 213 4e-54
ref|NP_223061.1| (NC_000921) putative Outer membrane protei... 206 5e-52
ref|NP_207958.1| (NC_000915) hypothetical protein [Helicoba... 167 2e-40
ref|NP_223811.1| (NC_000921) putative Outer membrane protei... 163 4e-39
ref|NP_223157.1| (NC_000921) putative Outer membrane protei... 155 9e-37
ref|NP_207284.1| (NC_000915) hypothetical protein [Helicoba... 152 6e-36
ref|NP_207283.1| (NC_000915) hypothetical protein [Helicoba... 106 6e-22
ref|NP_223156.1| (NC_000921) Outer membrane protein [Helico... 103 4e-21
>ref|NP_207007.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64546 hypothetical protein HP0209 - Helicobacter pylori (strain 26695)
gb|AAD07285.1| (AE000541) H. pylori predicted coding region HP0209 [Helicobacter
pylori 26695]
Length = 450
Score = 944 bits (2440), Expect = 0.0
Identities = 450/450 (100%), Positives = 450/450 (100%)
Query: 1 MLNQKVWLGFLALHGVFLNAFEYQISARVGSFSRIAFNQSVINSKKGIYPTGSYVTTTGA 60
MLNQKVWLGFLALHGVFLNAFEYQISARVGSFSRIAFNQSVINSKKGIYPTGSYVTTTGA
Sbjct: 1 MLNQKVWLGFLALHGVFLNAFEYQISARVGSFSRIAFNQSVINSKKGIYPTGSYVTTTGA 60
Query: 61 LQVDLSLLPKGIENHKLGFGVGGEIGSLAYDSTKFLMDEANPKAGFQPANWYYMGRWEGY 120
LQVDLSLLPKGIENHKLGFGVGGEIGSLAYDSTKFLMDEANPKAGFQPANWYYMGRWEGY
Sbjct: 61 LQVDLSLLPKGIENHKLGFGVGGEIGSLAYDSTKFLMDEANPKAGFQPANWYYMGRWEGY 120
Query: 121 LMQHSQNWTREQKAQNARPYVLYNLYLDYQYKDIFGIKLGRYPSKALFLSGFNQGFEVFY 180
LMQHSQNWTREQKAQNARPYVLYNLYLDYQYKDIFGIKLGRYPSKALFLSGFNQGFEVFY
Sbjct: 121 LMQHSQNWTREQKAQNARPYVLYNLYLDYQYKDIFGIKLGRYPSKALFLSGFNQGFEVFY 180
Query: 181 RWKKFRIEWFSTFGRALANEQSIRDFYAPVNYKQKINYGMHNLNLIYENKYIRVAPFIWF 240
RWKKFRIEWFSTFGRALANEQSIRDFYAPVNYKQKINYGMHNLNLIYENKYIRVAPFIWF
Sbjct: 181 RWKKFRIEWFSTFGRALANEQSIRDFYAPVNYKQKINYGMHNLNLIYENKYIRVAPFIWF 240
Query: 241 YPKNFNAPGFEITHDTKSYWESLWRIQTTFYAWFPLYSDYLSKDYYRASLIGKKSASLFV 300
YPKNFNAPGFEITHDTKSYWESLWRIQTTFYAWFPLYSDYLSKDYYRASLIGKKSASLFV
Sbjct: 241 YPKNFNAPGFEITHDTKSYWESLWRIQTTFYAWFPLYSDYLSKDYYRASLIGKKSASLFV 300
Query: 301 FQRVHFRSYRFGWSVYKNFGNGNAQLGWNGSPVDPFYDTKDDTPYEDAYSNFYNANSITI 360
FQRVHFRSYRFGWSVYKNFGNGNAQLGWNGSPVDPFYDTKDDTPYEDAYSNFYNANSITI
Sbjct: 301 FQRVHFRSYRFGWSVYKNFGNGNAQLGWNGSPVDPFYDTKDDTPYEDAYSNFYNANSITI 360
Query: 361 NAFIGKSVKNLLVQLYGKLTYSPRADSQSLGVTFKYNLKKHIYLMLMFNGYQITMHKGYK 420
NAFIGKSVKNLLVQLYGKLTYSPRADSQSLGVTFKYNLKKHIYLMLMFNGYQITMHKGYK
Sbjct: 361 NAFIGKSVKNLLVQLYGKLTYSPRADSQSLGVTFKYNLKKHIYLMLMFNGYQITMHKGYK 420
Query: 421 VGFFTSGYNPDFAQTIQNRSYLMSSMSYRF 450
VGFFTSGYNPDFAQTIQNRSYLMSSMSYRF
Sbjct: 421 VGFFTSGYNPDFAQTIQNRSYLMSSMSYRF 450
>ref|NP_222916.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||B71963 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD05769.1| (AE001457) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 438
Score = 881 bits (2277), Expect = 0.0
Identities = 410/438 (93%), Positives = 429/438 (97%)
Query: 13 LHGVFLNAFEYQISARVGSFSRIAFNQSVINSKKGIYPTGSYVTTTGALQVDLSLLPKGI 72
+HG FL+AFEYQ+SARVGSFSRIAFNQS+INSKKGIYPTGSYVTTTGALQVD SLLPKGI
Sbjct: 1 MHGFFLSAFEYQVSARVGSFSRIAFNQSIINSKKGIYPTGSYVTTTGALQVDSSLLPKGI 60
Query: 73 ENHKLGFGVGGEIGSLAYDSTKFLMDEANPKAGFQPANWYYMGRWEGYLMQHSQNWTREQ 132
ENHKLGFGVGGEIG+LAYDSTKFL+DEANPKAGFQPANWYYMGRWEGYLMQHSQNWTREQ
Sbjct: 61 ENHKLGFGVGGEIGALAYDSTKFLIDEANPKAGFQPANWYYMGRWEGYLMQHSQNWTREQ 120
Query: 133 KAQNARPYVLYNLYLDYQYKDIFGIKLGRYPSKALFLSGFNQGFEVFYRWKKFRIEWFST 192
KAQNARPYVLYNLYLDYQYKDIFGIKLGRYPSKALFLSGFNQGFE+FYRWKKF+I WFST
Sbjct: 121 KAQNARPYVLYNLYLDYQYKDIFGIKLGRYPSKALFLSGFNQGFEIFYRWKKFKIVWFST 180
Query: 193 FGRALANEQSIRDFYAPVNYKQKINYGMHNLNLIYENKYIRVAPFIWFYPKNFNAPGFEI 252
FGRALANEQ IRDFYAPVNYKQKINYGMHN NL+YENKYIR+APFIWFYPKNFNAPGFEI
Sbjct: 181 FGRALANEQYIRDFYAPVNYKQKINYGMHNFNLVYENKYIRIAPFIWFYPKNFNAPGFEI 240
Query: 253 THDTKSYWESLWRIQTTFYAWFPLYSDYLSKDYYRASLIGKKSASLFVFQRVHFRSYRFG 312
THDTKSYW+SLWRIQTTFYAWFPLYSDYLSKDYYRA+L+GKKSA+LFVFQRV+FRSYRFG
Sbjct: 241 THDTKSYWKSLWRIQTTFYAWFPLYSDYLSKDYYRAALVGKKSAALFVFQRVNFRSYRFG 300
Query: 313 WSVYKNFGNGNAQLGWNGSPVDPFYDTKDDTPYEDAYSNFYNANSITINAFIGKSVKNLL 372
WSVYKNFGN + QLGWNGSP+DPFYDTKDDTPYEDAYSNFYNANSITINAFIGKS+KNLL
Sbjct: 301 WSVYKNFGNASVQLGWNGSPIDPFYDTKDDTPYEDAYSNFYNANSITINAFIGKSIKNLL 360
Query: 373 VQLYGKLTYSPRADSQSLGVTFKYNLKKHIYLMLMFNGYQITMHKGYKVGFFTSGYNPDF 432
VQLYGKLTYSPRAD+QSLGVTFKYNLKKHIY MLM NGYQITMHKGYKVGFFTSGYNPDF
Sbjct: 361 VQLYGKLTYSPRADAQSLGVTFKYNLKKHIYFMLMVNGYQITMHKGYKVGFFTSGYNPDF 420
Query: 433 AQTIQNRSYLMSSMSYRF 450
AQTIQNRSYLMSSMSYRF
Sbjct: 421 AQTIQNRSYLMSSMSYRF 438
>ref|NP_207575.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64617 hypothetical protein HP0782 - Helicobacter pylori (strain 26695)
gb|AAD07835.1| (AE000590) H. pylori predicted coding region HP0782 [Helicobacter
pylori 26695]
Length = 455
Score = 325 bits (834), Expect = 5e-88
Identities = 178/438 (40%), Positives = 263/438 (59%), Gaps = 8/438 (1%)
Query: 18 LNAFEYQISARVGSFSRIAFNQSVINSKKGIYPTGSYVTTTGALQVDLSLLPKGIENHKL 77
L AF+Y+ S SFS++ FN S +NSK+GI+PT ++VT T LQVD +LLPK IE H L
Sbjct: 21 LLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTATIKLQVDSNLLPKNIEKHSL 80
Query: 78 GFGVGGEIGSLAYDSTKFLMDEANPKAGFQPANWYYMGRWEGYLMQHSQNWTREQKAQNA 137
GVGG +G+LAYDSTK L+D+A + + ++++GRW GYL +R + +
Sbjct: 81 KIGVGGILGALAYDSTKTLIDQATHQV-YGSELFFFIGRWWGYLGDAPWKDSRIESDAHT 139
Query: 138 RPYVLYNLYLDYQYKDIFGIKLGRYPSKALFLSGFNQGFEVFYRW-KKFRIEWFSTFGRA 196
R YVLYN YL Y Y D F +KLGRY S F+SG+ QGFE+ Y+ K ++WFS+FGRA
Sbjct: 140 RNYVLYNSYLFYSYGDKFHLKLGRYLSNMDFMSGYTQGFELDYKINSKIALKWFSSFGRA 199
Query: 197 LANEQSIRDFYAPV---NYKQKINYGMHNLNLIYENKYIRVAPFIWFYPKNFNAPGFEIT 253
LA Q IRD+YAP+ + ++ ++YG+H + L + NK+++ PF +F PK + APG +I
Sbjct: 200 LAAGQWIRDWYAPIVTEDGRKDVDYGIHAVQLYFSNKHVQATPFFYFSPKTYEAPGIKIH 259
Query: 254 HDTKSYWESL-WRIQTTFYAWFPLYSDYLSKDYYRASLIGKKSASLFVFQRVHFRSYRFG 312
D+ + L R QT FP+Y+ L +R S IG+ ASL + QR + FG
Sbjct: 260 IDSNPKFRGLGLRSQTLINVIFPVYAKDLYDVVWRNSKIGEWGASLLIHQRFDCNEFNFG 319
Query: 313 WSVYKNFGNGNAQLGWNGSPVDPFYDTKDDTPYEDAYSNFYNANSITINAFIGKSVKNLL 372
+ Y+NFGN NA++GW G+P+ +D + ++ Y +SN A+S++ F G + L
Sbjct: 320 FGYYQNFGNANARIGWYGNPIP--FDIRSNSIYGLVFSNAVTADSVSGYVFGGGVYRGFL 377
Query: 373 VQLYGKLTYSPRADSQSLGVTFKYNLKKHIYLMLMFNGYQITMHKGYKVGFFTSGYNPDF 432
+ G+ TY+ RA +S+ + Y + + Y+++MH GYKV TS +N F
Sbjct: 378 WGILGRYTYATRASERSINLHLGYRWGSFASVDVNLQYYEVSMHTGYKVNDLTSPFNKAF 437
Query: 433 AQTIQNRSYLMSSMSYRF 450
Q+RS LM S+ + F
Sbjct: 438 KANTQDRSNLMVSVKFFF 455
>ref|NP_223437.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||G71896 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06302.1| (AE001503) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 455
Score = 313 bits (802), Expect = 3e-84
Identities = 172/438 (39%), Positives = 262/438 (59%), Gaps = 8/438 (1%)
Query: 18 LNAFEYQISARVGSFSRIAFNQSVINSKKGIYPTGSYVTTTGALQVDLSLLPKGIENHKL 77
L AF+Y+ S S S++ FN S +NSK+GI+PT ++VT T LQVD +LLPK IE H L
Sbjct: 21 LLAFDYKFSGVAESVSKVGFNHSKLNSKEGIFPTATFVTATIKLQVDSNLLPKNIEKHSL 80
Query: 78 GFGVGGEIGSLAYDSTKFLMDEANPKAGFQPANWYYMGRWEGYLMQHSQNWTREQKAQNA 137
GVGG +G+LAYDSTK L+D+A + + +Y +GRW G+L + + +
Sbjct: 81 KIGVGGILGALAYDSTKTLIDQATHQI-YGSELFYLIGRWWGFLGNAPWKDSLIESDAHT 139
Query: 138 RPYVLYNLYLDYQYKDIFGIKLGRYPSKALFLSGFNQGFEVFYRW-KKFRIEWFSTFGRA 196
R YVLYN YL Y Y D F +KLGRY S F+S + QGFE+ Y+ K ++WFS+FGRA
Sbjct: 140 RNYVLYNSYLFYSYGDKFHLKLGRYLSNMDFMSSYTQGFELDYKINSKIALKWFSSFGRA 199
Query: 197 LANEQSIRDFYAPV---NYKQKINYGMHNLNLIYENKYIRVAPFIWFYPKNFNAPGFEIT 253
LA Q IRD+YAP+ + ++++ G+H L + +K+++V PF +F PK + APG +I
Sbjct: 200 LAFGQWIRDWYAPIVTEDGRKEVYDGIHAAQLYFSSKHVQVMPFAYFSPKIYGAPGVKIH 259
Query: 254 HDTKSYWESL-WRIQTTFYAWFPLYSDYLSKDYYRASLIGKKSASLFVFQRVHFRSYRFG 312
D+ ++ L R QTT FP+Y+ L Y+R S IG+ ASL + QR + + FG
Sbjct: 260 IDSNPKFKGLGLRAQTTINVIFPVYAKDLYDVYWRNSKIGEWGASLLIHQRFDYNEFNFG 319
Query: 313 WSVYKNFGNGNAQLGWNGSPVDPFYDTKDDTPYEDAYSNFYNANSITINAFIGKSVKNLL 372
+ Y+NFGN NA++GW G+P+ ++ ++++ Y +SN A++++ F G + L
Sbjct: 320 FGYYQNFGNANARIGWYGNPIP--FNYRNNSVYGGVFSNAITADAVSGYVFGGGVYRGFL 377
Query: 373 VQLYGKLTYSPRADSQSLGVTFKYNLKKHIYLMLMFNGYQITMHKGYKVGFFTSGYNPDF 432
+ G+ TY+ RA +S+ + Y + + Y ++MH GY++ + T +N F
Sbjct: 378 WGILGRYTYATRASERSINLNLGYKWGSFARVDVNLEYYVVSMHNGYRLDYLTGPFNKAF 437
Query: 433 AQTIQNRSYLMSSMSYRF 450
Q+RS LM SM + F
Sbjct: 438 KADAQDRSNLMVSMKFFF 455
>ref|NP_223568.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||E71880 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06428.1| (AE001514) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 514
Score = 251 bits (641), Expect = 1e-65
Identities = 161/494 (32%), Positives = 252/494 (50%), Gaps = 62/494 (12%)
Query: 18 LNAFEYQISARVGSFSRIAFNQSVINSKKGIYPTGSYVTTTGALQVDLSLLPKGIENHKL 77
+ AF+Y+ S RV +FS+I FN S IN+KKGIYPT S++ QV ++LLPKG ENH+L
Sbjct: 22 VEAFDYRFSGRVENFSKIGFNNSQINTKKGIYPTESFIDIVTLAQVKVNLLPKGTENHRL 81
Query: 78 GFGVGGEIGSLAYDSTKFLMDEANPKAGFQPANWYYMGRWEGYLMQH----SQNWTREQK 133
+GG I ++ YD TK+ +++AN K F ++G + GY + T +
Sbjct: 82 SVSLGGAIAAIPYDKTKYYINQANGKV-FGSIVENFIGGYHGYFFNKYLGPAYAGTSQSA 140
Query: 134 AQNARPYVLYNLYLDYQYKDIFGIKLGRYPSKALFLSGFNQGFEVFYR-----WKKFRIE 188
+ +ARPYV+ +L Y YKD+FG K GRY + F+SG NQG+EV+Y+ ++ R
Sbjct: 141 SYHARPYVVDTAFLRYDYKDVFGFKAGRYEANIDFMSGSNQGWEVYYQPYKTETQRLRFW 200
Query: 189 WFSTFGRALANEQSIRDFYAPVNYKQK----------INYGMHNLNLIYENKYIRVAPFI 238
W+S+FGR LA I +F+A V Y +K INYG H + Y K + F
Sbjct: 201 WWSSFGRGLAFNSWIYEFFATVPYLKKGGNPSNSNDFINYGWHGITTTYSYKGLDAQFFY 260
Query: 239 WFYPKNFNAPGFEITHDTKSYWESL-WRIQTTFYAWFPLY---------SDYLSKDYY-R 287
+F PK +NAPGF++ +DT +E++ +R Q+ FPLY + Y +D
Sbjct: 261 YFAPKTYNAPGFKLVYDTNRNFENVGFRSQSMIMTTFPLYYRGWYNPETNTYSLEDSTPH 320
Query: 288 ASLIGKKSASLFVFQRVHFRSYRFGWSVYKNFGNGNAQLGWNGSPVDP------------ 335
SL+G+ +L + Q + ++ + Y FGN +A LG + P
Sbjct: 321 GSLLGRNGVTLNIRQVFWWDNFNWSIGFYNTFGNSDAFLGSHTMPRGNNTSYISNEISVT 380
Query: 336 -------FYDTKDDTPYEDAYSNFYNANSITINAFIGKSVKNLLVQLYGKLTYS------ 382
YD D+T Y+ NAN+ T +G K ++G+++++
Sbjct: 381 TRHAGMIGYDFWDNTAYDGLADAITNANTFTFYTSVGGIHKRFAWHVFGRVSHANKNALG 440
Query: 383 --PRADSQSLGVTFKYNLKKHIYLMLMFNGYQITMHKGYKVGFFTSG--YNP--DFAQTI 436
RA+ SL Y + + L Y ++KGY+ G+F + NP DF+
Sbjct: 441 QVGRANEYSLQFNASYAFTESVLLNFRITYYGARINKGYQAGYFGAPKFNNPDGDFSANY 500
Query: 437 QNRSYLMSSMSYRF 450
Q+RSY+M++++ +F
Sbjct: 501 QDRSYMMTNLTLKF 514
>ref|NP_207706.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||B64634 hypothetical protein HP0914 - Helicobacter pylori (strain 26695)
gb|AAD07966.1| (AE000601) H. pylori predicted coding region HP0914 [Helicobacter
pylori 26695]
Length = 514
Score = 249 bits (636), Expect = 5e-65
Identities = 162/492 (32%), Positives = 253/492 (50%), Gaps = 62/492 (12%)
Query: 20 AFEYQISARVGSFSRIAFNQSVINSKKGIYPTGSYVTTTGALQVDLSLLPKGIENHKLGF 79
AF+Y+ S RV +FS+I FN S IN+KKGIYPT S++ QV ++LLPKG ENH+L
Sbjct: 24 AFDYRFSGRVENFSKIGFNNSQINTKKGIYPTESFIDIVTLAQVKVNLLPKGTENHRLSV 83
Query: 80 GVGGEIGSLAYDSTKFLMDEANPKAGFQPANWYYMGRWEGYLMQH----SQNWTREQKAQ 135
+GG I ++ YD TK+ +++AN K F ++G + GY + T + +
Sbjct: 84 SLGGAIAAIPYDKTKYDINQANGKI-FGSIVENFIGGYHGYFFNKYLGPAYAGTSQSASY 142
Query: 136 NARPYVLYNLYLDYQYKDIFGIKLGRYPSKALFLSGFNQGFEVFYR-----WKKFRIEWF 190
+ARPYV+ +L Y YKD+FG K GRY + F+SG NQG+EV+Y+ ++ R W+
Sbjct: 143 HARPYVVDTAFLRYDYKDVFGFKAGRYEANIDFMSGSNQGWEVYYQPYKTETQRLRFWWW 202
Query: 191 STFGRALANEQSIRDFYAPVNYKQK----------INYGMHNLNLIYENKYIRVAPFIWF 240
S+FGR LA I +F+A V Y +K INYG H + Y K + F +F
Sbjct: 203 SSFGRGLAFNSWIYEFFATVPYLKKGGNPNNSNDFINYGWHGITTTYSYKGLDAQFFYYF 262
Query: 241 YPKNFNAPGFEITHDTKSYWESL-WRIQTTFYAWFPLY---------SDYLSKDYY-RAS 289
PK +NAPGF++ +DT ++++ +R Q+ FPLY + Y +D S
Sbjct: 263 APKTYNAPGFKLVYDTNRNFQNVGFRSQSMIMTTFPLYYRGWYNPETNTYSLEDSTPHGS 322
Query: 290 LIGKKSASLFVFQRVHFRSYRFGWSVYKNFGNGNAQLG-----------WNGSPVDPF-- 336
L+G+ +L + Q + ++ + Y FGN +A LG + GS +
Sbjct: 323 LLGRNGVTLNIRQVFWWDNFNWSIGFYNTFGNSDAFLGSHTMPRGNNTSYIGSEISITTR 382
Query: 337 ------YDTKDDTPYEDAYSNFYNANSITINAFIGKSVKNLLVQLYGKLTYS-------- 382
YD D+T Y+ NAN+ T +G K ++G+++++
Sbjct: 383 HAGMIGYDFWDNTAYDGLADAITNANTFTFYTSVGGIHKRFAWHVFGRVSHANKNALGQV 442
Query: 383 PRADSQSLGVTFKYNLKKHIYLMLMFNGYQITMHKGYKVGFFTSG--YNP--DFAQTIQN 438
RA+ SL Y + I L Y ++KGY+ G+F + NP DF+ Q+
Sbjct: 443 GRANEYSLQFNASYAFTESILLNFRITYYGARINKGYQAGYFGAPKFNNPDGDFSANYQD 502
Query: 439 RSYLMSSMSYRF 450
RSY+M++++ +F
Sbjct: 503 RSYMMTNLTLKF 514
>ref|NP_223443.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||C71895 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06307.1| (AE001504) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 499
Score = 246 bits (628), Expect = 4e-64
Identities = 159/471 (33%), Positives = 240/471 (50%), Gaps = 49/471 (10%)
Query: 24 QISARVGSFSRIAFNQSVINSKKGIYPTGSYVTTTGALQVDLS-LLPKGI--ENHKLGFG 80
+I A SFS++ FN IN+ KGIYPT +++T +QVD + LLPK H L
Sbjct: 32 KIKAGAESFSKVGFNNKPINTNKGIYPTETFMTIMAYMQVDFTELLPKSATANGHHLDGS 91
Query: 81 VGGEIGSLAYDSTKFLMDEANPKAGFQPANWYYMGRWEGYLMQH--------SQNWTREQ 132
+GG G++ YDSTK ++E K + W Y+G W G + Q + N T+ Q
Sbjct: 92 LGGWGGAVIYDSTKDFINEVTGKP-YGAMTWNYVGYWGGLVGQKPWASCGLATGNLTQGQ 150
Query: 133 K--------------------------AQNARPYVLYNLYLDYQYKDIFGIKLGRYPSKA 166
A + R YV+YN YL Y YKDIF I+ GRY S A
Sbjct: 151 YDKMTQAEMTQLSNQEALAASTCAKTYADHTRNYVIYNAYLRYNYKDIFEIRGGRYESPA 210
Query: 167 LFLSGFNQGFEVFYRWKKFRIEWFSTFGRALANEQSIRDFYAPVNYK----QKINYGMHN 222
++SG+NQG ++ F+ WFS+FGR A + + +FY+P Y Q IN G+H
Sbjct: 211 DYMSGYNQGLDMTLNLGNFKFWWFSSFGRGFAYNEWLYNFYSPKTYTLKNGQTINPGVHA 270
Query: 223 LNLIYENKYIRVAPFIWFYPKNFNAPGFEITHDTKSYWESL-WRIQTTFYAWFPLYSDYL 281
+I+ K + PF++F P N P F IT+D+ + L +R QT P Y+
Sbjct: 271 FYIIWNYKGFSIQPFVYFSPFNEYDPNFTITYDSNPTFTGLGFRSQTDVTVLNPFYAKRF 330
Query: 282 SKDYYRASLIGKKSASLFVFQRVHFRSYRFGWSVYKNFGNGNAQLGWNGSPVDPFYDTKD 341
Y L GK + SL + Q+ + Y FG+ +YK+FGN N +G++G+ + +D
Sbjct: 331 WDTYQFGMLAGKNAHSLMIKQKFEWNEYNFGFGIYKSFGNANWMIGYHGNRLG--FDFWT 388
Query: 342 DTPYE---DAYSNFYNANSITINAFIGKSVKNLLVQLYGKLTYSPRADSQSLGVTFKYNL 398
+T Y ++ S +AN+ T+ AF G + LL L G+LTY PRA+ Q L + Y
Sbjct: 389 NTVYANTLNSLSYMMDANAFTVFAFGGGVHRKLLWGLLGRLTYGPRANEQVLSLNLGYKF 448
Query: 399 KKHIYLMLMFNGYQITMHKGYKVGFFTSGYNPDFAQTIQNRSYLMSSMSYR 449
K+ + F Y + MH+GYK+G+ + A T Q+RS++ + + ++
Sbjct: 449 TKNFSADIKFEYYNVLMHQGYKMGWNGPKLDSQPA-TDQDRSHIFTEIVWK 498
>ref|NP_207581.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64618 hypothetical protein HP0788 - Helicobacter pylori (strain 26695)
gb|AAD07845.1| (AE000591) H. pylori predicted coding region HP0788 [Helicobacter
pylori 26695]
Length = 499
Score = 242 bits (617), Expect = 7e-63
Identities = 158/471 (33%), Positives = 239/471 (50%), Gaps = 49/471 (10%)
Query: 24 QISARVGSFSRIAFNQSVINSKKGIYPTGSYVTTTGALQVDLS-LLPKGI--ENHKLGFG 80
+I A SFS++ FN IN+ KG+YPT +++T +QVD + LLPK H L
Sbjct: 32 KIKAGAESFSKVGFNNKPINTNKGLYPTETFMTIMAYMQVDFTELLPKSATANGHHLDGS 91
Query: 81 VGGEIGSLAYDSTKFLMDEANPKAGFQPANWYYMGRWEGYLMQH--------SQNWTREQ 132
+GG G++ YDSTK ++E K + W Y+G W G + Q + N T+ Q
Sbjct: 92 LGGWGGAVIYDSTKDFINEVTGKT-YGAMAWNYVGYWGGLVGQKPWASCGLATGNLTQGQ 150
Query: 133 K--------------------------AQNARPYVLYNLYLDYQYKDIFGIKLGRYPSKA 166
A + R YV+YN YL Y YKDIF I+ GRY S A
Sbjct: 151 YDKMTQAEMTQLSNQEALEASTCAKGYAAHTRNYVIYNAYLRYNYKDIFEIRGGRYESPA 210
Query: 167 LFLSGFNQGFEVFYRWKKFRIEWFSTFGRALANEQSIRDFYAPVNYK----QKINYGMHN 222
++SG+NQG ++ F+ WFS+FGR A + + +FY+P Y Q IN G+H
Sbjct: 211 DYMSGYNQGLDMTLNLGNFKFWWFSSFGRGFAYNEWLYNFYSPKTYTLKNGQTINPGVHA 270
Query: 223 LNLIYENKYIRVAPFIWFYPKNFNAPGFEITHDTKSYWESL-WRIQTTFYAWFPLYSDYL 281
I+ K + PF++F P N P F IT+D+ + L +R QT P Y+
Sbjct: 271 FYAIWNYKGWSIQPFVYFSPFNEYDPNFTITYDSNPTFTGLGFRSQTDVTVLNPFYAKRF 330
Query: 282 SKDYYRASLIGKKSASLFVFQRVHFRSYRFGWSVYKNFGNGNAQLGWNGSPVDPFYDTKD 341
Y GK + SL + Q+ + Y FG+ +YK+FGN N +G++G+ + +D
Sbjct: 331 WDTYQFGMPAGKNAHSLMIKQKFEWNEYNFGFGIYKSFGNANWMIGYHGNRLG--FDFWT 388
Query: 342 DTPYE---DAYSNFYNANSITINAFIGKSVKNLLVQLYGKLTYSPRADSQSLGVTFKYNL 398
+T Y ++ S +AN+ T+ AF G + LL L G+LTY PRA+ Q L + F Y
Sbjct: 389 NTVYANTLNSLSYMMDANAFTVFAFGGGVHRKLLWGLLGRLTYGPRANEQVLSLNFGYKF 448
Query: 399 KKHIYLMLMFNGYQITMHKGYKVGFFTSGYNPDFAQTIQNRSYLMSSMSYR 449
K+ + F Y + MH+GYK+G+ + A T Q+RS++ + + ++
Sbjct: 449 TKNFSADIKFEYYNVLMHQGYKMGWNGPKLDSQPA-TDQDRSHIFTEIVWK 498
>ref|NP_207874.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64655 hypothetical protein HP1083 - Helicobacter pylori (strain 26695)
gb|AAD08134.1| (AE000615) H. pylori predicted coding region HP1083 [Helicobacter
pylori 26695]
Length = 479
Score = 213 bits (542), Expect = 4e-54
Identities = 148/484 (30%), Positives = 237/484 (48%), Gaps = 46/484 (9%)
Query: 2 LNQKVWLGFLALH-GVFLNAFEYQISARVGSFSRIAFNQSVINSKKGIYPTGSYVTTTGA 60
L +V+ G L L AF+Y+I SFS++ FN+ I+ +GIYPT ++VT G
Sbjct: 7 LKNQVFCGLYVLSLSASLQAFDYKIEVSAESFSKVGFNKKKIDIARGIYPTETFVTAVGQ 66
Query: 61 LQVDLSLLPKGIEN--HKLGFGVGGEIGSLAYDSTKFLMDEANPKAGFQPANWYYMGRWE 118
+ LPKG+++ H L +GG +G +AYDSTKF + + Y+G W+
Sbjct: 67 GNIYADFLPKGLKDQGHVLEGKIGGTLGGVAYDSTKFNQGGS--------VIYNYIGYWD 118
Query: 119 GYL----------MQHSQNWTREQKAQNA------------RPYVLYNLYLDYQYKDIFG 156
GYL H + K ++ R Y++ N +L+Y+YKDIF
Sbjct: 119 GYLGGKRALLDGTSIHECALGSDGKVIDSIACGNARANKIRRNYLMNNAFLEYRYKDIFL 178
Query: 157 IKLGRYPSKALFLSGFNQGFEVFYRWKK-----FRIEWFSTFGRALANEQSIRDFYAP-- 209
K GRY S A ++SG+ QGFE+ + K ++ WFS++GRA A + I DFY+P
Sbjct: 179 AKGGRYQSNAPYMSGYTQGFEISAKVKDKNEGIHKLWWFSSWGRAFAYGEWIYDFYSPRT 238
Query: 210 -VNYKQKINYGMHNLNLIYENKYIRVAPFIWFYPKNFNAPGFEITHDTKSYWESL-WRIQ 267
V + +NYG+H +N YE K + V+PF F P + +PG + +D+ + + +R +
Sbjct: 239 VVKNGRTLNYGIHLVNYTYERKGVSVSPFFQFSPGTYYSPGVVVGYDSNPNFNGVGFRSE 298
Query: 268 TTFYAWFPLYSDYLSKDYYRASL-IGKKSASLFVFQRVHFRSYRFGWSVYKNFGNGNAQL 326
T Y P++ D L +D YR ++ G SL + QR + + FG + YK + N NA +
Sbjct: 299 TKAYILLPVH-DPLRRDTYRYAIKAGTAGQSLLIRQRFDYNEFNFGGAFYKVWKNANAYI 357
Query: 327 GWNGSPVDPFYDTKDDTPYEDAYSNFYNANSITINAFIGKSVKNLLVQLYGKLTYSPRAD 386
G G+P+ + T A S+ A++++ F G K L + T A+
Sbjct: 358 GTTGNPLGIDFWTNSVYDIGQALSHVVTADAVSGWVFGGGVHKKWLWGTLWRWTSGTLAN 417
Query: 387 SQSLGVTFKYNLKKHIYLMLMFNGYQITMHKGYKVGFFTSGYNPDFAQTIQNRSYLMSSM 446
S V Y + K + + + H G+ VG + P +RS+LM+++
Sbjct: 418 EASAAVNVGYKISKSLTASVKLEYLGVMTHAGFTVGSYRP--TPGSKALYSDRSHLMTTL 475
Query: 447 SYRF 450
S +F
Sbjct: 476 SAKF 479
>ref|NP_223061.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||H71942 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD05925.1| (AE001470) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 479
Score = 206 bits (524), Expect = 5e-52
Identities = 144/484 (29%), Positives = 234/484 (47%), Gaps = 46/484 (9%)
Query: 2 LNQKVWLGFLALH-GVFLNAFEYQISARVGSFSRIAFNQSVINSKKGIYPTGSYVTTTGA 60
L KV+ G L + AF+Y+I SFS++ FN+ I+ +GIYPT ++VT G
Sbjct: 7 LKNKVFCGLYVLSLSASVQAFDYKIEVLAESFSKVGFNKKKIDIARGIYPTETFVTAVGQ 66
Query: 61 LQVDLSLLPKGIEN--HKLGFGVGGEIGSLAYDSTKFLMDEANPKAGFQPANWYYMGRWE 118
+ L K +++ H L VGG IG +AYDSTKF + + Y+G W+
Sbjct: 67 GNIYADFLSKSLKDQGHVLEGKVGGTIGGIAYDSTKFNQGGS--------VIYNYIGYWD 118
Query: 119 GYL----------MQHSQNWTREQKAQNA------------RPYVLYNLYLDYQYKDIFG 156
GYL H + K ++ R Y++ N +L+Y+YKDIF
Sbjct: 119 GYLGGKRALLDGTSIHECALGSDGKVIDSIACGNARANKIRRNYLMNNAFLEYRYKDIFA 178
Query: 157 IKLGRYPSKALFLSGFNQGFEVFYRWK-----KFRIEWFSTFGRALANEQSIRDFYAP-- 209
K GRY S A ++S + QGFE+ + K ++ WFS++GRA A + I DFY+P
Sbjct: 179 AKGGRYQSNAPYMSSYTQGFEISAKIKDKNEGSHKLWWFSSWGRAFAYGEWIYDFYSPRT 238
Query: 210 -VNYKQKINYGMHNLNLIYENKYIRVAPFIWFYPKNFNAPGFEITHDTKSYWESL-WRIQ 267
+ + +NYG+H ++ YE K + V+PF F P + +PG + +D+ + + +R +
Sbjct: 239 VIKNGRTLNYGIHLVDYTYERKGVSVSPFFQFSPGTYYSPGVAVGYDSNPNFNGVGFRSE 298
Query: 268 TTFYAWFPLYSDYLSKDYYRASL-IGKKSASLFVFQRVHFRSYRFGWSVYKNFGNGNAQL 326
T Y P+++ L +D YR ++ G SL + QR + + FG + YK + N NA +
Sbjct: 299 TKAYILLPVHAP-LKRDTYRYAVKAGTAGQSLLIRQRFDYNEFNFGGAFYKVWKNANAYI 357
Query: 327 GWNGSPVDPFYDTKDDTPYEDAYSNFYNANSITINAFIGKSVKNLLVQLYGKLTYSPRAD 386
G G+P+ + T A S+ A++++ F G K L + T A+
Sbjct: 358 GTTGNPLGIDFWTNSVYDIGQALSHVVTADAVSGWVFGGGVHKKWLWGTLWRWTSGALAN 417
Query: 387 SQSLGVTFKYNLKKHIYLMLMFNGYQITMHKGYKVGFFTSGYNPDFAQTIQNRSYLMSSM 446
S V Y + K + + + H G+ VG + P +RS+LM+++
Sbjct: 418 EASAAVNVGYKISKSLTASVKLEYLGVMTHSGFTVGSYRP--TPGSKALYSDRSHLMTTL 475
Query: 447 SYRF 450
S +F
Sbjct: 476 SAKF 479
>ref|NP_207958.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64665 hypothetical protein HP1167 - Helicobacter pylori (strain 26695)
gb|AAD08213.1| (AE000622) H. pylori predicted coding region HP1167 [Helicobacter
pylori 26695]
Length = 471
Score = 167 bits (424), Expect = 2e-40
Identities = 111/341 (32%), Positives = 166/341 (48%), Gaps = 30/341 (8%)
Query: 18 LNAFEYQISARVGSFSRIAFNQSVINSKKGIYPTGSYVTTTGALQVDLSLLPKGIENHKL 77
L FE +++ V S I FNQ IN ++GIYP + T G L + SLLPK + +H L
Sbjct: 18 LQGFEAKLNGFVDQSSTIGFNQHKINKERGIYPMQQFATIAGYLGLGFSLLPKKVSDHVL 77
Query: 78 GFGVGGEIGSLAYDSTKFLMDEANPKAGFQPANWYYMGRWEGY--LMQHSQNWTREQKA- 134
+GG +GS+ YD TK D + F YY G GY ++Q T+ K
Sbjct: 78 KGKIGGMVGSIFYDGTKKFEDSSVAYNLFG----YYDGFMGGYTNILQSDDLATQNMKYN 133
Query: 135 QNARPYVLYNLYLDYQYKDIFGIKLGRYPSKALFLSGFNQGFEVFYRWKKFRIEWFSTFG 194
+N R YV + YL+Y YK+ F IK GRY S + SG QGF++ ++KK R+ WFS+FG
Sbjct: 134 KNVRNYVFSDAYLEYAYKNYFEIKAGRYLSTMPYKSGQTQGFQISGQYKKARLTWFSSFG 193
Query: 195 RALANEQSIRDFYAP----------------VNYKQKINYGMHNLNLIYENKYIRVAPFI 238
RA A + D++A ++ +K+ YG H + L Y+ + F
Sbjct: 194 RAFAYGSFLMDWFAARTTYSGGFTKNDKGGYDSHGRKVLYGTHAVQLTYKPHRFLIEGFY 253
Query: 239 WFYPKNFNAPGFEITHDTKSYWESL-WRIQTTFYAWFPLYSDYL------SKDYYRASLI 291
+ P+ FNAPG +I D+ + +R T +FP+Y ++ S Y +
Sbjct: 254 YLSPQIFNAPGVKIGWDSNPNFSGTGFRSDTAIIGFFPIYYPWMIVKSNGSPVYKYDTPA 313
Query: 292 GKKSASLFVFQRVHFRSYRFGWSVYKNFGNGNAQLGWNGSP 332
+ +L + QR +Y + YK F N N +G G+P
Sbjct: 314 TQNGQNLIILQRFDINNYNVSIAFYKVFQNANGWIGNMGNP 354
>ref|NP_223811.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||B71849 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06676.1| (AE001537) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 471
Score = 163 bits (412), Expect = 4e-39
Identities = 109/350 (31%), Positives = 166/350 (47%), Gaps = 28/350 (8%)
Query: 8 LGFLALHGVFLNAFEYQISARVGSFSRIAFNQSVINSKKGIYPTGSYVTTTGALQVDLSL 67
L F A L FE +++ V S I FNQ IN ++GIYP + T G L + SL
Sbjct: 8 LFFGAFLSTSLQGFEAKLNGFVDQSSTIGFNQHKINKERGIYPMQQFATIAGYLGLGFSL 67
Query: 68 LPKGIENHKLGFGVGGEIGSLAYDSTKFLMDEANPKAGFQPANWY--YMGRWEGYLMQHS 125
LPK + +H L +GG +GS+ YD TK D + + +Y +MG + L S
Sbjct: 68 LPKKVSDHVLKGKIGGMVGSIFYDGTKKFEDGS---VAYNLFGYYDGFMGVYTNILQTDS 124
Query: 126 QNWTREQKAQNARPYVLYNLYLDYQYKDIFGIKLGRYPSKALFLSGFNQGFEVFYRWKKF 185
+ +N R YV + YL+Y YK+ F IK GRY S + SG QGF+V ++K
Sbjct: 125 LETQNMKHNKNVRNYVFSDAYLEYAYKNYFEIKAGRYLSTMPYKSGQTQGFQVSGQYKHA 184
Query: 186 RIEWFSTFGRALANEQSIRDFYAP----------------VNYKQKINYGMHNLNLIYEN 229
R+ WFS++GRA A + D++A ++ +K+ YG H + L Y+
Sbjct: 185 RLTWFSSWGRAFAYGSFLMDWFAARTTYSGGFTKNNNGGYDSHGRKVLYGTHAVQLTYKP 244
Query: 230 KYIRVAPFIWFYPKNFNAPGFEITHDTKSYWESL-WRIQTTFYAWFPLYSDYL------S 282
+ F + P+ FNAPG +I D+ + +R T +FP+Y ++ S
Sbjct: 245 HRFLIEGFYYLSPQIFNAPGVKIGWDSNPNFSGTGFRSDTAIIGFFPIYYPWMIVKSNGS 304
Query: 283 KDYYRASLIGKKSASLFVFQRVHFRSYRFGWSVYKNFGNGNAQLGWNGSP 332
Y + + +L + QR +Y + YK F N N +G G+P
Sbjct: 305 PVYRYDTPATQNGQNLIIRQRFDINNYNVSIAFYKVFQNANGWIGNMGNP 354
>ref|NP_223157.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||G71931 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06017.1| (AE001478) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 465
Score = 155 bits (392), Expect = 9e-37
Identities = 126/476 (26%), Positives = 215/476 (44%), Gaps = 57/476 (11%)
Query: 8 LGFLALHGVFLNA-----FEYQISARVGSFSRIAFNQSVINSKKGIYPTGSYVTTTGALQ 62
L FL G+FL+ F I +V S+++ FN K IYPTGSY + G L
Sbjct: 11 LFFLLFSGLFLSKLQAYKFNMSIVGKVSSYTKFGFNNQRYQPSKDIYPTGSYTSLLGELN 70
Query: 63 VDLSLLPKGIENHKLGFGVGGEIGSLAYDSTKFLMDEANPKAGFQPAN----------WY 112
+ + L KG+ VG + +L YDST + + N QP + W
Sbjct: 71 LSMGLY-KGLRAE-----VGAMMAALPYDSTAY---QGNNIPNGQPGSRTDPFGAGIFWQ 121
Query: 113 YMGRWEGYLMQHSQNWTREQKAQNARPYVLYNLYLDYQYKD---IFGIKLGRYPSKAL-F 168
Y+G + G+ Q R +++N +L Y YK FG+K GRY ++ +
Sbjct: 122 YIGWYAGH---------SGLNVQKPRLAMVHNAFLSYNYKKDKFSFGVKGGRYDAEEYDW 172
Query: 169 LSGFNQGFEVFYRWKKFRIEWFSTFGRALANEQSIRDFYAPVNYKQKINYGMHNLNLIYE 228
+ + QG E F ++K R+ + RA A+ D++ + +L YE
Sbjct: 173 FTSYTQGVEGFVKYKDTRLRVMYSDARASASS----DWFWYFGRYYTSGKALMIADLKYE 228
Query: 229 NKYIRVAPFIWFYPKNFNAPGFEITHDTKSYWESL-WRIQTTFYAWFPLYSDYLSKD--- 284
+++ P+ + + APG IT+DT + + +R TF +FP+++ +++
Sbjct: 229 KDNLKINPYFYAIFQRMYAPGINITYDTNPNFNNKGFRFVGTFVGFFPIFATPANQNDII 288
Query: 285 YYRASLIGKKSASLFVFQRVHFRSYRFGWSVYKNFGNGNAQLGWNGSPVDPFYDTKDDTP 344
++ +GK + F R ++ ++FG SVYKN GN N +G G P+ Y+ ++
Sbjct: 289 LFQQVPLGKSGQTYFFRTRFYYNKWQFGGSVYKNIGNANGDIGIYGDPLG--YNIWTNSI 346
Query: 345 YEDAYSNFYNANSITINAFIGKSVKNLLVQLYGKLTYSPRADSQSLGVTFKY-NLKKHIY 403
Y+ +N A+ I ++G + ++ G+ T SPRAD +SL + Y + K +I
Sbjct: 347 YDAEINNIVGADVINGFLYVGSQYRGFSWKILGRWTDSPRADERSLALFLSYFSNKYNIR 406
Query: 404 LMLMFNGYQITMHKGYKVGFF---------TSGYNPDFAQTIQNRSYLMSSMSYRF 450
+ L Y KGY +G+ G P +RS++M +++Y F
Sbjct: 407 MDLKLEYYGNITKKGYCIGYCGMYVPVDPNGPGTQPLTHNVYSDRSHIMFNITYGF 462
>ref|NP_207284.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64580 hypothetical protein HP0487 - Helicobacter pylori (strain 26695)
gb|AAD07555.1| (AE000563) H. pylori predicted coding region HP0487 [Helicobacter
pylori 26695]
Length = 480
Score = 152 bits (385), Expect = 6e-36
Identities = 125/476 (26%), Positives = 214/476 (44%), Gaps = 57/476 (11%)
Query: 8 LGFLALHGVFLNA-----FEYQISARVGSFSRIAFNQSVINSKKGIYPTGSYVTTTGALQ 62
L FL +FL+ F I +V S+++ FN K IYPTGSY + G L
Sbjct: 26 LFFLLFSSLFLSKLQAYKFNMSIVGKVSSYTKFGFNNQRYQPSKDIYPTGSYTSLLGELN 85
Query: 63 VDLSLLPKGIENHKLGFGVGGEIGSLAYDSTKFLMDEANPKAGFQPAN----------WY 112
+ + L KG+ VG + +L YDST + + N QP + W
Sbjct: 86 LSMGLY-KGLRAE-----VGAMMAALPYDSTAY---QGNNIPNGQPGSRTDPFGAGIFWQ 136
Query: 113 YMGRWEGYLMQHSQNWTREQKAQNARPYVLYNLYLDYQYKD---IFGIKLGRYPSKAL-F 168
Y+G + G+ + Q R +++N +L Y YK FG+K GRY ++ +
Sbjct: 137 YIGWYAGH---------SGLQVQKPRLAMVHNAFLSYNYKKDKFSFGVKGGRYDAEEYDW 187
Query: 169 LSGFNQGFEVFYRWKKFRIEWFSTFGRALANEQSIRDFYAPVNYKQKINYGMHNLNLIYE 228
+ + QG E F ++K R + RA A+ D++ + +L YE
Sbjct: 188 FTSYTQGVEGFVKYKDTRFRVMYSDARASASS----DWFWYFGRYYTSGKALMVADLKYE 243
Query: 229 NKYIRVAPFIWFYPKNFNAPGFEITHDTKSYWESL-WRIQTTFYAWFPLYSDYLSKD--- 284
+++ P+ + + APG IT+DT + + +R TF +FP+++ +++
Sbjct: 244 KDNLKINPYFYAIFQRMYAPGINITYDTNPNFNNKGFRFVGTFVGFFPIFATPANQNDII 303
Query: 285 YYRASLIGKKSASLFVFQRVHFRSYRFGWSVYKNFGNGNAQLGWNGSPVDPFYDTKDDTP 344
++ +GK + F R ++ ++FG SVYKN GN N +G G P+ Y+ ++
Sbjct: 304 LFQQVPLGKSGQTYFFRTRFYYNKWQFGGSVYKNIGNANGDIGIYGDPLG--YNIWTNSI 361
Query: 345 YEDAYSNFYNANSITINAFIGKSVKNLLVQLYGKLTYSPRADSQSLGVTFKY-NLKKHIY 403
Y+ +N A+ I ++G + ++ G+ T SPRAD +SL + Y + K +I
Sbjct: 362 YDAEINNIVGADVINGFLYVGSQYRGFSWKILGRWTDSPRADERSLALFLSYFSNKYNIR 421
Query: 404 LMLMFNGYQITMHKGYKVGFF---------TSGYNPDFAQTIQNRSYLMSSMSYRF 450
+ L Y KGY +G+ G P +RS++M +++Y F
Sbjct: 422 MDLKLEYYGNITKKGYCIGYCGMYVPVDPNGPGTQPLTHNVYSDRSHIMFNIAYGF 477
>ref|NP_207283.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64580 hypothetical protein HP0486 - Helicobacter pylori (strain 26695)
gb|AAD07554.1| (AE000563) H. pylori predicted coding region HP0486 [Helicobacter
pylori 26695]
Length = 528
Score = 106 bits (264), Expect = 6e-22
Identities = 127/518 (24%), Positives = 200/518 (38%), Gaps = 101/518 (19%)
Query: 18 LNAFEYQISARVGSFSRIAFNQSVINSKKGIYPTGSYVTTTGALQVDLSLLPKGIENHKL 77
L A Y++ +F+++ FN S IN KGIYPT ++V TG L+ + L N
Sbjct: 27 LGAVTYEVHGDFINFAKVGFNHSPINPVKGIYPTETFVNLTGKLEGSVHLGRGWTVN--- 83
Query: 78 GFGVGGEIGSLAYDSTKF-------------------------------LMDEANPKAGF 106
+GG +G AYD TK+ + ++ P
Sbjct: 84 ---LGGVLGGQAYDGTKYDRWAKDFTPPSYWDKTSCGTDSMSLCMNATKMWQQSGPGGVI 140
Query: 107 QPAN--WYYMGRWEGYLMQHSQNWTREQKAQNARPYVLYNLYLDYQYKDIFGIKLGRYP- 163
P W YMG W G + +R Y +Y L Y D + +GR+
Sbjct: 141 NPRGIGWEYMGEWNGLFPNYYP--ANAYLPGGSRRYQVYKANLTYD-SDRVHMVMGRFDI 197
Query: 164 SKALFLSGFNQGFEVFYRW----KKFRIEWFSTFGRALANEQSIRDFYAPVNYKQKINYG 219
++ + Q F+ FY K + FS +GR +A+ Q + P+ Y++K +G
Sbjct: 198 TEQEQMDWIYQLFQGFYGTFKLTKNMKFLLFSGWGRGIADGQ----WLFPI-YREK-PWG 251
Query: 220 MHNLNLIYE-NKYIRVAPFIWFYPKNFNAPGFEITHDTKSYWESLW-RIQTTFYA----- 272
+H +IY K + + P+++ P PG +I +DT + R +TTFYA
Sbjct: 252 VHKAGIIYRPTKNLMIHPYVYLIPMVGTLPGAKIEYDTNPEFSGRGIRNRTTFYALYDYR 311
Query: 273 W------------FPLYSDYLSKDYYRASLIGKKSASLFVFQRVHFRSYRFGWSVYKNFG 320
W + + +L +R L G A+L + + +Y Y N G
Sbjct: 312 WNNAEYGRYAPARYNTWDPFLDNGKWRG-LQGPGGATLLLRHHIDINNYFVVGGAYLNIG 370
Query: 321 NGNAQLGWNGSPVD-PFYDTKDDTPYEDAYS---NFYNANSITINAFIGKSVKNLLVQLY 376
N N LG G+PV + + Y ++ N +A++ T G +Y
Sbjct: 371 NPNMNLGTWGNPVAVDGIEQWVGSIYSLGFAGIDNITDADAFTEYVKGGGKHGKFSWSVY 430
Query: 377 GKLTYSPRADSQSLGVTFKYNLKKHIYLMLMFNGYQITMHKGYKVGFFTSGYNPD----- 431
+ T +PRA +G+ Y KH+ L + + GY G G N
Sbjct: 431 QRFTTAPRALEYGIGMYLDYQFSKHVKAGLKLVWLEFQIRAGYNPGTGFLGPNGQPLNLN 490
Query: 432 --------FAQTIQN-----------RSYLMSSMSYRF 450
FAQ QN RS+LM+ +SY F
Sbjct: 491 TGLFESSAFAQGPQNMGGIAKSITQDRSHLMTHISYSF 528
>ref|NP_223156.1| (NC_000921) Outer membrane protein [Helicobacter pylori J99]
pir||F71931 outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06016.1| (AE001478) Outer membrane protein [Helicobacter pylori J99]
Length = 528
Score = 103 bits (257), Expect = 4e-21
Identities = 125/518 (24%), Positives = 201/518 (38%), Gaps = 101/518 (19%)
Query: 18 LNAFEYQISARVGSFSRIAFNQSVINSKKGIYPTGSYVTTTGALQVDLSLLPKGIENHKL 77
L A Y++ +FS++ FN+S IN KGIYPT ++V TG L+ + L N
Sbjct: 27 LGAVTYEVHGDFINFSKVGFNRSPINPVKGIYPTETFVNLTGKLEGSVHLGRGWTVN--- 83
Query: 78 GFGVGGEIGSLAYDSTKF-------------------------------LMDEANPKAGF 106
VGG +G YD+T++ + + P
Sbjct: 84 ---VGGVLGGQVYDNTRYDRWAKDFTPPSYWDKTSCGTDSLSLCMNATKMWQQQGPGGII 140
Query: 107 QPAN--WYYMGRWEGYLMQHSQNWTREQKAQNARPYVLYNLYLDYQYKDIFGIKLGRYP- 163
P + YMG W G + ++R Y +Y L Y D + +GR+
Sbjct: 141 DPRGIGYMYMGEWNGLFPNYYP--ANAYLPGHSRRYEVYKANLTYD-SDRVHMVMGRFDV 197
Query: 164 SKALFLSGFNQGFEVFYRW----KKFRIEWFSTFGRALANEQSIRDFYAPVNYKQKINYG 219
++ + Q F+ FY K + FS++GR +A+ Q + P+ Y++K +G
Sbjct: 198 TEQEQMDWIYQLFQGFYGTFKLTKNMKFLLFSSWGRGIADGQ----WLFPI-YREK-PWG 251
Query: 220 MHNLNLIYE-NKYIRVAPFIWFYPKNFNAPGFEITHDTKSYWESLW-RIQTTFY------ 271
+H +IY K + + P+++ P PG +I +DT + R +TTFY
Sbjct: 252 IHKAGIIYRPTKNLMIHPYVYLIPMVGTLPGAKIEYDTNPEFSGRGIRNKTTFYVLYDYR 311
Query: 272 -----------AWFPLYSDYLSKDYYRASLIGKKSASLFVFQRVHFRSYRFGWSVYKNFG 320
A + + +L +R L G A+L++ + +Y Y N G
Sbjct: 312 WNNAEYGRYAPARYNTWDPFLDNGKWRG-LQGPGGATLYLHHHIDINNYFVVGGAYLNIG 370
Query: 321 NGNAQLGWNGSPVD-PFYDTKDDTPYEDAYS---NFYNANSITINAFIGKSVKNLLVQLY 376
N N LG G+PV + Y ++ N +A++ T G +Y
Sbjct: 371 NPNMNLGTWGNPVALDGIEQWVGGIYSLGFAGIDNITDADAFTEYVKGGGKHGKFSWSVY 430
Query: 377 GKLTYSPRADSQSLGVTFKYNLKKHIYLMLMFNGYQITMHKGYKVGFFTSGYNPD----- 431
+ T +PRA +G+ Y KH+ L + + GY G G N
Sbjct: 431 QRFTTAPRALEYGIGMYLDYQFSKHVKAGLKLVWLEFQIRAGYNPGTGFLGPNGQPLNLN 490
Query: 432 --------FAQTIQN-----------RSYLMSSMSYRF 450
FAQ QN RS+LM+ +SY F
Sbjct: 491 NGLFESSAFAQGPQNMGGIAKSITQDRSHLMTHISYSF 528
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.323 0.139 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 307,665,125
Number of Sequences: 1026957
Number of extensions: 13970714
Number of successful extensions: 25798
Number of sequences better than 1.0e-02: 16
Number of HSP's better than 0.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 25707
Number of HSP's gapped (non-prelim): 23
length of query: 450
length of database: 324,149,939
effective HSP length: 124
effective length of query: 326
effective length of database: 196,807,271
effective search space: 64159170346
effective search space used: 64159170346
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 99 (42.7 bits)