BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644839|ref|NP_207009.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(250 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207009.1| (NC_000915) conserved hypothetical secrete... 519 e-146
gb|AAC24210.1| (AF053708) cysteine-rich protein; HcpA [Heli... 506 e-143
gb|AAB63298.1| (AF008565) Orf2 [Helicobacter pylori] 503 e-142
ref|NP_222918.1| (NC_000921) putative [Helicobacter pylori ... 495 e-139
ref|NP_223741.1| (NC_000921) putative [Helicobacter pylori ... 328 3e-89
ref|NP_207889.1| (NC_000915) conserved hypothetical secrete... 327 6e-89
gb|AAL47062.1|AF326614_1 (AF326614) JHP318-like protein [He... 221 7e-57
gb|AAM66156.1|AF326634_1 (AF326634) JHP1437-like protein [H... 209 3e-53
ref|NP_224155.1| (NC_000921) putative [Helicobacter pylori ... 205 3e-52
ref|NP_223037.1| (NC_000921) putative [Helicobacter pylori ... 205 4e-52
gb|AAM66150.1|AF326629_1 (AF326629) JHP1437-like protein [H... 204 7e-52
gb|AAM66148.1|AF326627_1 (AF326627) JHP1437-like protein [H... 197 1e-49
gb|AAL47059.1|AF326610_1 (AF326610) JHP318-like protein [He... 195 3e-49
gb|AAM66151.1|AF326630_1 (AF326630) JHP1437-like protein [H... 191 5e-48
gb|AAM66155.1|AF326633_1 (AF326633) JHP1437-like protein [H... 189 3e-47
gb|AAL47058.1|AF326608_1 (AF326608) JHP318-like protein [He... 186 2e-46
gb|AAM66149.1|AF326628_1 (AF326628) JHP1437-like protein [H... 181 9e-45
ref|NP_222869.1| (NC_000921) putative [Helicobacter pylori ... 172 2e-42
ref|NP_206959.1| (NC_000915) conserved hypothetical secrete... 169 2e-41
ref|NP_222941.1| (NC_000921) putative [Helicobacter pylori ... 153 2e-36
ref|NP_207033.1| (NC_000915) conserved hypothetical secrete... 150 2e-35
gb|AAL47060.1|AF326611_1 (AF326611) JHP318-like protein [He... 145 4e-34
gb|AAL47063.1|AF326616_1 (AF326616) JHP1024-like protein [H... 125 3e-28
ref|NP_207134.1| (NC_000915) hypothetical protein [Helicoba... 113 2e-24
ref|NP_223289.1| (NC_000921) putative [Helicobacter pylori ... 109 3e-23
gb|AAB47276.1| (U86608) 29 kDa protein [Helicobacter pylori] 107 1e-22
ref|NP_207908.1| (NC_000915) conserved hypothetical secrete... 105 5e-22
ref|NP_223762.1| (NC_000921) putative [Helicobacter pylori ... 105 5e-22
ref|NP_281603.1| (NC_002163) putative periplasmic protein [... 101 7e-21
ref|NP_586349.1| (NC_003237) similarity to SKT5 PROTEIN [En... 99 6e-20
ref|NP_207422.1| (NC_000915) hypothetical protein [Helicoba... 94 1e-18
ref|NP_459646.1| (NC_003197) putative TPR repeat protein [S... 87 1e-16
gb|EAA06387.1| (AAAB01008846) agCP13101 [Anopheles gambiae ... 84 2e-15
ref|NP_415177.1| (NC_000913) orf, hypothetical protein [Esc... 83 2e-15
sp|P77234|YBEQ_ECOLI Hypothetical protein ybeQ 83 2e-15
gb|AAL83953.1|AF354056_1 (AF354056) temperature-induced pro... 81 9e-15
ref|NP_286370.1| (NC_002655) ybeQ gene product [Escherichia... 78 1e-13
gb|AAF45339.1| (AE003066) CG13865 gene product [Drosophila ... 76 4e-13
ref|NP_651179.1| (NM_142922) BcDNA:LD23587 gene product [Dr... 74 2e-12
gb|AAF01236.1|AF185288_1 (AF185288) immunoreactive protein ... 73 3e-12
gb|AAD41587.1|AF057704_3 (AF057704) enhanced entry protein ... 72 4e-12
ref|XP_131544.1| (XM_131544) RIKEN cDNA 2010305A19 [Mus mus... 70 2e-11
dbj|BAB25716.1| (AK008518) data source:SPTR, source key:Q9H... 70 2e-11
ref|NP_246550.1| (NC_002663) unknown [Pasteurella multocida... 70 3e-11
ref|NP_455743.1| (NC_003198) putative secreted protein [Sal... 69 4e-11
ref|NP_460716.1| (NC_003197) putative TPR repeat protein [S... 69 4e-11
gb|AAD05210.1| (AF063095) SELlL [Mus musculus] >gi|20073079... 69 5e-11
ref|XP_127076.1| (XM_127076) similar to Sel-1 homolog precu... 69 5e-11
ref|NP_005056.3| (NM_005065) sel-1 suppressor of lin-12-lik... 67 1e-10
dbj|BAB12403.1| (AB048195) SEL1L [Mesocricetus auratus] 67 1e-10
gb|AAF29413.1|AF052059_1 (AF052059) SEL1L [Homo sapiens] >g... 67 1e-10
gb|AAH15313.1|AAH15313 (BC015313) hypothetical protein FLJ1... 67 2e-10
gb|EAA00460.1| (AAAB01008986) agCP9334 [Anopheles gambiae s... 67 2e-10
ref|NP_284256.1| (NC_003116) hypothetical protein [Neisseri... 66 3e-10
ref|NP_245305.1| (NC_002663) unknown [Pasteurella multocida... 66 3e-10
pir||T46587 hypothetical protein [imported] - Vogesella ind... 66 3e-10
emb|CAB65792.2| (AL109657) dJ842G6.2 (novel protein imilar ... 65 5e-10
ref|NP_075565.1| (NM_023077) hypothetical protein FLJ12439 ... 65 5e-10
ref|NP_273467.1| (NC_003112) conserved hypothetical protein... 64 2e-09
ref|NP_405544.1| (NC_003143) putative exported protein [Yer... 62 4e-09
ref|NP_564049.1| (NM_101684) expressed protein [Arabidopsis... 62 4e-09
ref|NP_274346.1| (NC_003112) conserved hypothetical protein... 62 6e-09
ref|NP_106249.1| (NC_002678) unknown protein [Mesorhizobium... 62 8e-09
gb|AAK64159.1| (AY039982) unknown protein [Arabidopsis thal... 62 8e-09
ref|NP_460954.1| (NC_003197) putative TPR repeat protein [S... 61 1e-08
ref|NP_506144.1| (NM_073743) Yeast hypothetical gene L8167.... 60 2e-08
gb|AAC47112.1| (U50828) sel-1 gene product [Caenorhabditis ... 60 2e-08
ref|NP_541444.1| (NC_003318) TETRATRICOPEPTIDE REPEAT FAMIL... 60 3e-08
ref|NP_496487.1| (NM_064086) ZK20.4.p [Caenorhabditis elega... 60 3e-08
gb|AAC37164.1| (L05770) putative regulatory protein PobS [A... 59 6e-08
ref|XP_046437.2| (XM_046437) similar to dJ842G6.2 (novel pr... 58 8e-08
ref|NP_661851.1| (NC_002932) conserved hypothetical protein... 58 1e-07
ref|NP_455035.1| (NC_003198) conserved hypothetical protein... 57 2e-07
ref|NP_103302.1| (NC_002678) unknown protein [Mesorhizobium... 57 2e-07
ref|NP_518145.1| (NC_003295) PUTATIVE SIGNAL PEPTIDE PROTEI... 56 3e-07
ref|NP_420846.1| (NC_002696) conserved hypothetical protein... 56 4e-07
ref|NP_223186.1| (NC_000921) putative [Helicobacter pylori ... 55 7e-07
gb|AAG30966.1|AC012396_2 (AC012396) hypothetical protein, 3... 55 9e-07
ref|NP_177498.1| (NM_106015) hypothetical protein [Arabidop... 55 9e-07
ref|NP_249051.1| (NC_002516) hypothetical protein [Pseudomo... 53 3e-06
ref|NP_207316.1| (NC_000915) conserved hypothetical protein... 53 4e-06
ref|NP_638122.1| (NC_003902) conserved hypothetical protein... 52 6e-06
ref|NP_455031.1| (NC_003198) probable secreted protein [Sal... 52 8e-06
ref|NP_459433.1| (NC_003197) putative periplasmic protein [... 51 1e-05
ref|NP_253206.1| (NC_002516) hypothetical protein [Pseudomo... 51 1e-05
gb|AAL47061.1|AF326613_1 (AF326613) JHP318-like protein [He... 50 2e-05
ref|NP_459434.1| (NC_003197) putative TPR repeat protein [S... 49 5e-05
ref|NP_253774.1| (NC_002516) hypothetical protein [Pseudomo... 48 9e-05
ref|NP_473246.1| (NC_000521) predicted using hexExon; MAL3P... 48 1e-04
ref|NP_643252.1| (NC_003919) conserved hypothetical protein... 47 1e-04
ref|NP_286374.1| (NC_002655) orf, hypothetical protein [Esc... 47 2e-04
ref|NP_102363.1| (NC_002678) hypothetical protein [Mesorhiz... 47 3e-04
ref|NP_010078.1| (NC_001136) Hypothetical ORF; Ydl203cp [Sa... 47 3e-04
ref|NP_596099.1| (NC_003423) very putative chitin synthase ... 46 3e-04
ref|NP_602587.1| (NC_003454) Tetratricopeptide repeat famil... 46 3e-04
ref|NP_455032.1| (NC_003198) conserved hypothetical protein... 45 6e-04
ref|NP_539245.1| (NC_003317) TETRATRICOPEPTIDE REPEAT FAMIL... 45 6e-04
ref|NP_415180.1| (NC_000913) orf, hypothetical protein [Esc... 45 6e-04
ref|NP_619470.1| (NC_003552) hypothetical protein (multi-do... 45 7e-04
ref|NP_521481.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN... 45 0.001
ref|NP_595669.1| (NC_003423) hypothetical protein [Schizosa... 45 0.001
ref|NP_616298.1| (NC_003552) O-linked GlcNAc transferase [M... 44 0.002
ref|NP_585810.1| (NC_003233) putative SKT5-like protein [En... 44 0.002
ref|NP_435252.1| (NC_003037) hypothetical protein [Sinorhiz... 44 0.002
ref|XP_130572.1| (XM_130572) similar to dJ842G6.2 (novel pr... 44 0.002
ref|NP_283034.1| (NC_003116) hypothetical protein NMA0184 [... 44 0.002
ref|NP_658424.1| (NC_003995) TPR, TPR Domain [Bacillus anth... 42 0.005
ref|NP_439767.1| (NC_000907) H. influenzae predicted coding... 42 0.005
ref|NP_253775.1| (NC_002516) hypothetical protein [Pseudomo... 42 0.006
ref|NP_531202.1| (NC_003304) conserved hypothetical protein... 42 0.008
ref|NP_253773.1| (NC_002516) hypothetical protein [Pseudomo... 42 0.008
ref|NP_353527.1| (NC_003062) AGR_C_883p [Agrobacterium tume... 42 0.008
>ref|NP_207009.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
sp|O25001|HCPA_HELPY HcpA protein precursor (Cysteine-rich 28 kDa protein)
pir||C64546 conserved hypothetical secreted protein HP0211 - Helicobacter
pylori (strain 26695)
gb|AAD07279.1| (AE000541) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 250
Score = 519 bits (1336), Expect = e-146
Identities = 250/250 (100%), Positives = 250/250 (100%)
Query: 1 MLGNVKKTLFGVLCLGTLCLRGLMAEPDAKELVNLGIESAKKQDFAQAKTHFEKACELKN 60
MLGNVKKTLFGVLCLGTLCLRGLMAEPDAKELVNLGIESAKKQDFAQAKTHFEKACELKN
Sbjct: 1 MLGNVKKTLFGVLCLGTLCLRGLMAEPDAKELVNLGIESAKKQDFAQAKTHFEKACELKN 60
Query: 61 GFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKA 120
GFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKA
Sbjct: 61 GFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKA 120
Query: 121 SQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYS 180
SQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYS
Sbjct: 121 SQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYS 180
Query: 181 VTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEAC 240
VTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEAC
Sbjct: 181 VTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEAC 240
Query: 241 DALKELKIEL 250
DALKELKIEL
Sbjct: 241 DALKELKIEL 250
>gb|AAC24210.1| (AF053708) cysteine-rich protein; HcpA [Helicobacter pylori]
Length = 250
Score = 506 bits (1303), Expect = e-143
Identities = 243/250 (97%), Positives = 245/250 (97%)
Query: 1 MLGNVKKTLFGVLCLGTLCLRGLMAEPDAKELVNLGIESAKKQDFAQAKTHFEKACELKN 60
MLG+VKKT FGVLCLG LCLRGLMAEPDAKELVNLGIESAKKQDFAQAKTHFEKACELKN
Sbjct: 1 MLGSVKKTFFGVLCLGALCLRGLMAEPDAKELVNLGIESAKKQDFAQAKTHFEKACELKN 60
Query: 61 GFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKA 120
GFGCVFLGAFYEEGKGVGKDLKKAIQFYTK CELNDGYGCNLLGNLYYNGQGVSKDAKKA
Sbjct: 61 GFGCVFLGAFYEEGKGVGKDLKKAIQFYTKSCELNDGYGCNLLGNLYYNGQGVSKDAKKA 120
Query: 121 SQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYS 180
SQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYS
Sbjct: 121 SQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYS 180
Query: 181 VTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEAC 240
VTKNFKEAIVRYS+ACEL DGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKS VKEAC
Sbjct: 181 VTKNFKEAIVRYSQACELNDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSGVKEAC 240
Query: 241 DALKELKIEL 250
DALKELKIEL
Sbjct: 241 DALKELKIEL 250
>gb|AAB63298.1| (AF008565) Orf2 [Helicobacter pylori]
Length = 250
Score = 503 bits (1295), Expect = e-142
Identities = 242/250 (96%), Positives = 244/250 (96%)
Query: 1 MLGNVKKTLFGVLCLGTLCLRGLMAEPDAKELVNLGIESAKKQDFAQAKTHFEKACELKN 60
MLG+VKKT F VLCLG LCLRGLMAEPDAKELVNLGIESAKKQDFAQAKTHFEKACELKN
Sbjct: 1 MLGSVKKTFFWVLCLGALCLRGLMAEPDAKELVNLGIESAKKQDFAQAKTHFEKACELKN 60
Query: 61 GFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKA 120
GFGCVFLGAFYEEGKGVGKDLKKAIQFYTK CELNDGYGCNLLGNLYYNGQGVSKDAKKA
Sbjct: 61 GFGCVFLGAFYEEGKGVGKDLKKAIQFYTKSCELNDGYGCNLLGNLYYNGQGVSKDAKKA 120
Query: 121 SQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYS 180
SQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYS
Sbjct: 121 SQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYS 180
Query: 181 VTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEAC 240
VTKNFKEAIVRYS+ACEL DGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKS VKEAC
Sbjct: 181 VTKNFKEAIVRYSQACELNDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSGVKEAC 240
Query: 241 DALKELKIEL 250
DALKELKIEL
Sbjct: 241 DALKELKIEL 250
>ref|NP_222918.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZMM1|HCPA_HELPJ HcpA protein precursor (Cysteine-rich 28 kDa protein)
pir||B71961 hypothetical protein jhp0197 - Helicobacter pylori (strain J99)
gb|AAD05781.1| (AE001458) putative [Helicobacter pylori J99]
Length = 250
Score = 495 bits (1275), Expect = e-139
Identities = 237/250 (94%), Positives = 242/250 (96%)
Query: 1 MLGNVKKTLFGVLCLGTLCLRGLMAEPDAKELVNLGIESAKKQDFAQAKTHFEKACELKN 60
MLG+VKKTLFGVLCLG LCLRGLMAEPDAKELV+LGIES KKQDFAQAK HFEKACELK
Sbjct: 1 MLGSVKKTLFGVLCLGALCLRGLMAEPDAKELVSLGIESVKKQDFAQAKAHFEKACELKE 60
Query: 61 GFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKA 120
GFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGC LLGNLYYNGQGVSKDAKKA
Sbjct: 61 GFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCRLLGNLYYNGQGVSKDAKKA 120
Query: 121 SQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYS 180
SQYYSK+C+LNHAEGC VLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGY+Y
Sbjct: 121 SQYYSKSCELNHAEGCTVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYMYG 180
Query: 181 VTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEAC 240
V KNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEAC
Sbjct: 181 VAKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEAC 240
Query: 241 DALKELKIEL 250
DALKELKIEL
Sbjct: 241 DALKELKIEL 250
>ref|NP_223741.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71859 hypothetical protein jhp1024 - Helicobacter pylori (strain J99)
gb|AAD06595.1| (AE001530) putative [Helicobacter pylori J99]
Length = 290
Score = 328 bits (841), Expect = 3e-89
Identities = 167/290 (57%), Positives = 197/290 (67%), Gaps = 40/290 (13%)
Query: 1 MLGNVKKTLFGVLCLGTLCLRGLMAEPDAKELVNLGIESAKKQDFAQAKTHFEKACELKN 60
ML NVKK+LF VLCLG LCL GLMAE D KELV LG +S K+QDF QAK +FEKAC+LK
Sbjct: 1 MLENVKKSLFRVLCLGALCLGGLMAEQDPKELVGLGAKSYKEQDFTQAKKYFEKACDLKE 60
Query: 61 GFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKA 120
GC LG Y +G GV K+LKKA FY+K C+LN GC+LLGNLYY+GQGVS++ KA
Sbjct: 61 NSGCFNLGVLYYQGHGVEKNLKKAASFYSKACDLNYSNGCHLLGNLYYSGQGVSQNTNKA 120
Query: 121 SQYYSKACDLNHAE------------------------------------GCMVLGSLHH 144
QYYSKACDL +AE GC +LGSL+
Sbjct: 121 LQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYD 180
Query: 145 YGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKACELKD 200
G GTPKDL+KAL Y+KACDLKDSPGC NAG +Y KNFKEA+ RYSKACEL++
Sbjct: 181 AGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAAKNFKEALARYSKACELEN 240
Query: 201 GRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEACDALKELKIEL 250
G GC+NLG MQYN +G ++EKQA+ENFKKGCK K ACD LK+LKI++
Sbjct: 241 GGGCFNLGAMQYNGEGATRNEKQAIENFKKGCKLGAKGACDILKQLKIKV 290
>ref|NP_207889.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
pir||B64657 conserved hypothetical secreted protein HP1098 - Helicobacter
pylori (strain 26695)
gb|AAD08141.1| (AE000616) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 290
Score = 327 bits (839), Expect = 6e-89
Identities = 166/290 (57%), Positives = 197/290 (67%), Gaps = 40/290 (13%)
Query: 1 MLGNVKKTLFGVLCLGTLCLRGLMAEPDAKELVNLGIESAKKQDFAQAKTHFEKACELKN 60
ML NVKK+ F VLCLG LCL GLMAE D KELV LG +S K++DF QAK +FEKAC+LK
Sbjct: 1 MLENVKKSFFRVLCLGALCLGGLMAEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKE 60
Query: 61 GFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKA 120
GC LG Y +G+GV K+LKKA FY K C+LN GC+LLGNLYY+GQGVS++ KA
Sbjct: 61 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKA 120
Query: 121 SQYYSKACDLNHAE------------------------------------GCMVLGSLHH 144
QYYSKACDL +AE GC +LGSL+
Sbjct: 121 LQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYD 180
Query: 145 YGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKACELKD 200
G GTPKDL+KAL Y+KACDLKDSPGC NAG +Y TKNFKEA+ RYSKACEL++
Sbjct: 181 AGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 240
Query: 201 GRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEACDALKELKIEL 250
G GC+NLG MQYN +G ++EKQA+ENFKKGCK K ACD LK+LKI++
Sbjct: 241 GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILKQLKIKV 290
>gb|AAL47062.1|AF326614_1 (AF326614) JHP318-like protein [Helicobacter pylori]
Length = 216
Score = 221 bits (562), Expect = 7e-57
Identities = 107/215 (49%), Positives = 144/215 (66%), Gaps = 4/215 (1%)
Query: 35 LGIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCEL 94
+G++S++ +D+ QAK +FEKAC L NG GC LG Y++GKGV K+L KA FY+K C+L
Sbjct: 1 MGVKSSEAKDYIQAKKYFEKACGLNNGGGCGALGDLYDDGKGVEKNLIKAAYFYSKACDL 60
Query: 95 NDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLR 154
+G GC LG+LYY+G+ V K+ KA+ +YSKACDLN+ GC LG L+ G G K+L
Sbjct: 61 KEGMGCKRLGSLYYHGRDVEKNLTKAAYFYSKACDLNNGGGCGNLGVLYQKGEGVEKNLI 120
Query: 155 KALDLYEKACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKACELKDGRGCYNLGVM 210
KA Y KAC+LKD GC + G +Y V K+ +A YSKAC+LK+G GC+NLG +
Sbjct: 121 KAAQFYSKACELKDGLGCKDLGTLYYNGEGVEKDLIKAAYLYSKACDLKEGLGCFNLGAL 180
Query: 211 QYNAQGTAKDEKQAVENFKKGCKSSVKEACDALKE 245
YN +G KD +A + K CK +EAC+ALKE
Sbjct: 181 YYNGKGVEKDLTKAAYFYSKACKLGSQEACEALKE 215
Score = 103 bits (258), Expect = 1e-21
Identities = 56/137 (40%), Positives = 75/137 (53%), Gaps = 4/137 (2%)
Query: 114 SKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCI 173
+KD +A +Y+ KAC LN+ GC LG L+ G G K+L KA Y KACDLK+ GC
Sbjct: 8 AKDYIQAKKYFEKACGLNNGGGCGALGDLYDDGKGVEKNLIKAAYFYSKACDLKEGMGCK 67
Query: 174 NAGYIY----SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFK 229
G +Y V KN +A YSKAC+L +G GC NLGV+ +G K+ +A + +
Sbjct: 68 RLGSLYYHGRDVEKNLTKAAYFYSKACDLNNGGGCGNLGVLYQKGEGVEKNLIKAAQFYS 127
Query: 230 KGCKSSVKEACDALKEL 246
K C+ C L L
Sbjct: 128 KACELKDGLGCKDLGTL 144
>gb|AAM66156.1|AF326634_1 (AF326634) JHP1437-like protein [Helicobacter pylori]
Length = 327
Score = 209 bits (531), Expect = 3e-53
Identities = 123/319 (38%), Positives = 163/319 (50%), Gaps = 77/319 (24%)
Query: 6 KKTLFGVLCLGTLCLRGLMAEPDAKELVNLGIESAKKQDFAQAKTHFEKACELKNGFGCV 65
+K+ F VLCLG LCL GLMAE + KEL+ LGI +DF +AK +FEKACEL + GC+
Sbjct: 8 QKSGFRVLCLGALCLGGLMAESNPKELIFLGITIYTDKDFTRAKEYFEKACELHDADGCI 67
Query: 66 FLGAFYEEG--KGVGK-----------------------------------DLKKAIQFY 88
L Y + KG K DLK A+++Y
Sbjct: 68 ILRETYSKVILKGSAKESIEKAIEHIATAKACKSNDAEKCKDLAEFYFNANDLKNALEYY 127
Query: 89 TK------------------------------------GCELNDGYGCNLLGNLYYNGQG 112
+K CELN G GC +LG++Y+NG+G
Sbjct: 128 SKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDLEYYSKACELNYGDGCAILGDIYHNGEG 187
Query: 113 VSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGC 172
V+++ KKA +YYSKAC+LN+ EGC LG + +G +DL+KA Y KAC+L ++ C
Sbjct: 188 VTQNFKKAFKYYSKACELNNGEGCSKLGGDYFFGESVTQDLKKAFGYYSKACELNEALTC 247
Query: 173 INAGYIY----SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENF 228
G Y VTK+ K+A +KACEL D +GCY L +G A+ EKQ ENF
Sbjct: 248 TLVGEFYRDGEGVTKDLKKAFEYSAKACELNDAKGCYALAAFYNEGKGVARGEKQMTENF 307
Query: 229 KKGCKSSVKEACDALKELK 247
+K CK +KEACD LKE K
Sbjct: 308 EKSCKLGLKEACDFLKEQK 326
>ref|NP_224155.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71807 hypothetical protein jhp1437 - Helicobacter pylori (strain J99)
gb|AAD07008.1| (AE001566) putative [Helicobacter pylori J99]
Length = 256
Score = 205 bits (522), Expect = 3e-52
Identities = 114/259 (44%), Positives = 151/259 (58%), Gaps = 16/259 (6%)
Query: 1 MLGNVKKTLFGVLCLGTLCL-RGLMAEPDAKELVNLGIESAKKQDFAQAKTHFEKACELK 59
MLG+VKK +F VLCLG LCL GLMAE D KEL+ GI ++F +AK +FEKAC+
Sbjct: 1 MLGSVKKAVFRVLCLGALCLCGGLMAEQDPKELIFSGITIYTDKNFTRAKKYFEKACKSN 60
Query: 60 NGFGCVFLGAFYEEGKGVGKD-----LKKAIQFYT--KGCELNDGYGCNLLGNLYYNGQG 112
+ GC L Y GK + ++ ++KA++ K C+LND C L Y+N
Sbjct: 61 DADGCAILREVYSSGKAIARENARESIEKALEHTATAKVCKLNDAEKCKDLAEFYFN--- 117
Query: 113 VSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGC 172
D K A +YYSK+C LN+ EGCM+ + ++ + K +K L+ Y KAC+L + GC
Sbjct: 118 -VNDLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDLEYYSKACELNNGGGC 176
Query: 173 INAGYIY----SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENF 228
G Y VTK+FK+A +KACEL D +GCY L +G AKDEKQ EN
Sbjct: 177 SKLGGDYFFGEGVTKDFKKAFEYSAKACELNDAKGCYALAAFYNEGKGVAKDEKQTTENL 236
Query: 229 KKGCKSSVKEACDALKELK 247
+K CK +KEACD LKE K
Sbjct: 237 EKSCKLGLKEACDILKEQK 255
>ref|NP_223037.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71945 hypothetical protein jhp0318 - Helicobacter pylori (strain J99)
gb|AAD05894.1| (AE001468) putative [Helicobacter pylori J99]
Length = 251
Score = 205 bits (521), Expect = 4e-52
Identities = 108/218 (49%), Positives = 134/218 (60%), Gaps = 5/218 (2%)
Query: 35 LGIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCEL 94
+G++S K +DF QAK +FEKAC L G GC LG Y++GKGV K+L KA Q YTK CEL
Sbjct: 1 MGVKSNKAKDFIQAKKYFEKACNLNYGGGCGALGDLYDDGKGVEKNLIKAAQPYTKACEL 60
Query: 95 NDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLR 154
+G GC L +LYY G+GV K+ KA+QY SKACDLN+ GC LG L+ YG G KDL
Sbjct: 61 KEGLGCERLWSLYYYGRGVEKNLIKAAQYASKACDLNNGVGCKNLGFLYEYGEGVEKDLI 120
Query: 155 KALDLYEKACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKACELKDGRGCYNLGVM 210
KA KACDL + GC G++Y V KN +A YSKAC+L +G GC+NLG +
Sbjct: 121 KAAQYASKACDLNNGSGCDVLGFLYGSGKGVEKNLTKAAYFYSKACDLNEGLGCFNLGGL 180
Query: 211 QYNAQGTAKDEKQAVENFKKGCKSSVKEACDALKELKI 248
YN QG KD + + K C+ C AL L I
Sbjct: 181 -YNGQGVEKDLTKVAYLYSKACELKESFGCGALAVLYI 217
Score = 125 bits (315), Expect = 3e-28
Identities = 65/131 (49%), Positives = 78/131 (58%), Gaps = 1/131 (0%)
Query: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCN 101
++D +A + KAC+L NG GC LG Y GKGV K+L KA FY+K C+LN+G GC
Sbjct: 116 EKDLIKAAQYASKACDLNNGSGCDVLGFLYGSGKGVEKNLTKAAYFYSKACDLNEGLGCF 175
Query: 102 LLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYE 161
LG LY NGQGV KD K + YSKAC+L + GC L L+ G G KDL KA
Sbjct: 176 NLGGLY-NGQGVEKDLTKVAYLYSKACELKESFGCGALAVLYINGQGVEKDLTKADQYIS 234
Query: 162 KACDLKDSPGC 172
KAC L D C
Sbjct: 235 KACKLGDQEAC 245
Score = 97.4 bits (241), Expect = 1e-19
Identities = 47/98 (47%), Positives = 57/98 (57%), Gaps = 1/98 (1%)
Query: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCN 101
+++ +A + KAC+L G GC LG Y G+GV KDL K Y+K CEL + +GC
Sbjct: 152 EKNLTKAAYFYSKACDLNEGLGCFNLGGLYN-GQGVEKDLTKVAYLYSKACELKESFGCG 210
Query: 102 LLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVL 139
L LY NGQGV KD KA QY SKAC L E C L
Sbjct: 211 ALAVLYINGQGVEKDLTKADQYISKACKLGDQEACEAL 248
>gb|AAM66150.1|AF326629_1 (AF326629) JHP1437-like protein [Helicobacter pylori]
Length = 325
Score = 204 bits (519), Expect = 7e-52
Identities = 123/325 (37%), Positives = 161/325 (48%), Gaps = 78/325 (24%)
Query: 1 MLGNVKKTLFGVLCLGTLCL-RGLMAEPDAKELVNLGIESAKKQDFAQAKTHFEKACELK 59
MLG+VKK +F VLCLG LCL GLMAE D KEL+ GI ++F +AK +FEKAC+
Sbjct: 1 MLGSVKKAVFRVLCLGALCLCGGLMAEQDPKELILSGITIYTDKNFTRAKKYFEKACKSN 60
Query: 60 NGFGCVFLGAFYEEG-------KGVGK------------------------------DLK 82
+ GC L Y + + + K DLK
Sbjct: 61 DADGCAILREAYSKAIARENARESIEKALEHTATAKACKSNDAEKCRDLAEFYFNVNDLK 120
Query: 83 KAIQFYTK------------------------------------GCELNDGYGCNLLGNL 106
A+++Y+K CELN G GC +LG++
Sbjct: 121 NALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDLEYYSKACELNYGDGCAILGDI 180
Query: 107 YYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDL 166
Y+NG+GV+KD KKA QYYSKAC+LN+ EG LG + +G G +DL+KA Y KAC L
Sbjct: 181 YHNGEGVAKDLKKAFQYYSKACELNNGEGYSKLGGAYFFGEGVTQDLKKAFGYYSKACKL 240
Query: 167 KDSPGCINAGYIY----SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEK 222
++ C G Y V K+ K+A +KACEL D +GCY L A+G A+ EK
Sbjct: 241 NEALTCTLVGEFYRDGEGVAKDLKKAFEYSAKACELNDAKGCYALAAFFNEAKGVARGEK 300
Query: 223 QAVENFKKGCKSSVKEACDALKELK 247
Q EN +K CK +KE CD KE K
Sbjct: 301 QTTENLEKSCKLGLKETCDIFKEQK 325
>gb|AAM66148.1|AF326627_1 (AF326627) JHP1437-like protein [Helicobacter pylori]
Length = 253
Score = 197 bits (500), Expect = 1e-49
Identities = 111/256 (43%), Positives = 148/256 (57%), Gaps = 13/256 (5%)
Query: 1 MLGNVKKTLFGVLCLGTLCLRGLMAEPDAKELVNLGIESAKKQDFAQAKTHFEKACELKN 60
ML VKK +F VLCL LCL GLMAE + KEL+ LGI +DF +AK +FEKACEL +
Sbjct: 1 MLRGVKKAVFRVLCLVALCLGGLMAESNPKELIFLGITIYTDKDFTRAKEYFEKACELHD 60
Query: 61 GFGCVFLGAFYEEG--KGVGKD-LKKAIQFYT--KGCELNDGYGCNLLGNLYYNGQGVSK 115
GC L Y + KG ++ ++KA++ K C+ ND C L Y+N +
Sbjct: 61 ADGCAILREAYSKVILKGSARESIEKALEHTATAKACKSNDAEKCKDLAEFYFN----AN 116
Query: 116 DAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINA 175
D K A +YYSK+C LN+ EGCM+ + ++ + K +K L+ Y KAC+L ++ C
Sbjct: 117 DLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDLEYYSKACELNEALTCTLV 176
Query: 176 GYIY----SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKG 231
G Y VTK+ K+A +KACEL D +GCY L +G AKDEKQ EN +K
Sbjct: 177 GEFYRDGEGVTKDLKKAFEYSAKACELNDAKGCYALAAFYNEGKGVAKDEKQTTENLEKS 236
Query: 232 CKSSVKEACDALKELK 247
CK +KEACD KE K
Sbjct: 237 CKLGLKEACDIFKEQK 252
>gb|AAL47059.1|AF326610_1 (AF326610) JHP318-like protein [Helicobacter pylori]
Length = 213
Score = 195 bits (496), Expect = 3e-49
Identities = 103/215 (47%), Positives = 137/215 (62%), Gaps = 7/215 (3%)
Query: 35 LGIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCEL 94
+G+ S KQDF++A+ +FEKAC+LK G GC LG Y++ V K+L KA FY+K C+L
Sbjct: 1 MGMLSYDKQDFSKARKYFEKACDLKYGGGCGALGDLYDD---VEKNLIKAAYFYSKACDL 57
Query: 95 NDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLR 154
+G GC LG+LYY+G+ V K+ KA+ +YSKACDLN+ GC LG L+ G G K+L
Sbjct: 58 KEGMGCKRLGSLYYHGRDVEKNLTKAAYFYSKACDLNNGGGCGNLGVLYQKGEGVEKNLI 117
Query: 155 KALDLYEKACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKACELKDGRGCYNLGVM 210
KA Y KAC+LKD GC + G +Y V K+ +A YSKACELK+ GC L V+
Sbjct: 118 KAAQFYSKACELKDGLGCKDLGTLYYNGEGVEKDLIKAAYLYSKACELKESFGCGALAVL 177
Query: 211 QYNAQGTAKDEKQAVENFKKGCKSSVKEACDALKE 245
N QG K+ +A + K CK +EAC+ALKE
Sbjct: 178 YINGQGVEKNLIKADQYISKACKLGDQEACEALKE 212
Score = 142 bits (357), Expect = 4e-33
Identities = 77/174 (44%), Positives = 99/174 (56%), Gaps = 7/174 (4%)
Query: 79 KDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMV 138
+D KA +++ K C+L G GC LG+LY V K+ KA+ +YSKACDL GC
Sbjct: 9 QDFSKARKYFEKACDLKYGGGCGALGDLY---DDVEKNLIKAAYFYSKACDLKEGMGCKR 65
Query: 139 LGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYS----VTKNFKEAIVRYSK 194
LGSL+++G K+L KA Y KACDL + GC N G +Y V KN +A YSK
Sbjct: 66 LGSLYYHGRDVEKNLTKAAYFYSKACDLNNGGGCGNLGVLYQKGEGVEKNLIKAAQFYSK 125
Query: 195 ACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEACDALKELKI 248
ACELKDG GC +LG + YN +G KD +A + K C+ C AL L I
Sbjct: 126 ACELKDGLGCKDLGTLYYNGEGVEKDLIKAAYLYSKACELKESFGCGALAVLYI 179
>gb|AAM66151.1|AF326630_1 (AF326630) JHP1437-like protein [Helicobacter pylori]
Length = 255
Score = 191 bits (486), Expect = 5e-48
Identities = 107/251 (42%), Positives = 146/251 (57%), Gaps = 13/251 (5%)
Query: 6 KKTLFGVLCLGTLCLRGLMAEPDAKELVNLGIESAKKQDFAQAKTHFEKACELKNGFGCV 65
+K+ F VLCLG LCL GLMAEP+ KEL+ GI +DF +AK +FEKAC+L + GC
Sbjct: 8 QKSGFRVLCLGALCLGGLMAEPNPKELIFSGITIYTDKDFTRAKEYFEKACKLNDADGCT 67
Query: 66 FLGAFYEEG--KGVGKD-LKKAIQFYT--KGCELNDGYGCNLLGNLYYNGQGVSKDAKKA 120
L Y + KG ++ ++KA++ K C+ ND C L Y+N + D K A
Sbjct: 68 ILREAYSKVILKGSARESIEKALEHTATAKACKSNDAEKCKDLAEFYFN----ANDLKNA 123
Query: 121 SQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY- 179
+YYSK+C LN+ EGCM+ + ++ + K +K L+ Y KAC+L ++ C G Y
Sbjct: 124 LEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDLEYYSKACELNEALTCTLVGEFYR 183
Query: 180 ---SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSSV 236
VTK+ K+A +KACEL D +GCY L +G AK EKQ EN +K CK +
Sbjct: 184 DGEGVTKDLKKAFEYSAKACELNDAKGCYALAAFYNEGKGVAKGEKQTTENLEKSCKLGL 243
Query: 237 KEACDALKELK 247
KEACD LKE K
Sbjct: 244 KEACDILKEQK 254
>gb|AAM66155.1|AF326633_1 (AF326633) JHP1437-like protein [Helicobacter pylori]
Length = 336
Score = 189 bits (479), Expect = 3e-47
Identities = 113/310 (36%), Positives = 155/310 (49%), Gaps = 77/310 (24%)
Query: 6 KKTLFGVLCLGTLCLRGLMAEPDAKELVNLGIESAKKQDFAQAKTHFEKACELKNGFGCV 65
+K+ F VLCL LCL GLMAE + KEL+ LGI +DF +AK +FEKACEL + GC+
Sbjct: 8 QKSGFRVLCLVALCLGGLMAESNPKELIFLGITIYTDKDFTRAKEYFEKACELHDADGCI 67
Query: 66 FLGAFYEEG--KGVGK-----------------------------------DLKKAIQFY 88
L Y + KG K DLK A+++Y
Sbjct: 68 ILRETYSKVILKGSAKESIEKAIEHIATAKACKSNDAEKCKDLAEFYFNANDLKNALEYY 127
Query: 89 TK------------------------------------GCELNDGYGCNLLGNLYYNGQG 112
+K CELN G GC +LG++Y+NG+G
Sbjct: 128 SKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDLEYYSKACELNYGDGCAILGDIYHNGEG 187
Query: 113 VSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGC 172
V+++ KKA +YYSKAC+LN+ EGC LG + +G +DL+KA Y KAC+L ++ C
Sbjct: 188 VTQNFKKAFKYYSKACELNNGEGCSKLGGDYFFGESVTQDLKKAFGYYSKACELNEALTC 247
Query: 173 INAGYIY----SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENF 228
G Y VTK+ K+A +KACEL D +GCY+L +G A+ EKQ EN
Sbjct: 248 TLVGEFYRDGEGVTKDLKKAFEYSAKACELNDAKGCYSLAAFFNEGKGVARGEKQMTENL 307
Query: 229 KKGCKSSVKE 238
+K CK +K+
Sbjct: 308 EKSCKLGLKK 317
Score = 68.6 bits (166), Expect = 6e-11
Identities = 43/139 (30%), Positives = 74/139 (52%), Gaps = 9/139 (6%)
Query: 115 KDAKKASQYYSKACDLNHAEGCMVLGSLHHYGV--GTPKD-LRKALD--LYEKACDLKDS 169
KD +A +Y+ KAC+L+ A+GC++L + + G+ K+ + KA++ KAC D+
Sbjct: 45 KDFTRAKEYFEKACELHDADGCIILRETYSKVILKGSAKESIEKAIEHIATAKACKSNDA 104
Query: 170 PGCINAGYIYSVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYN--AQGTAKDEKQAVEN 227
C + Y + K A+ YSK+C+L + GC L YN +G KD+K +E
Sbjct: 105 EKCKDLAEFYFNANDLKNALEYYSKSCKLNNVEGCM-LSATFYNDMIKGLKKDKKD-LEY 162
Query: 228 FKKGCKSSVKEACDALKEL 246
+ K C+ + + C L ++
Sbjct: 163 YSKACELNYGDGCAILGDI 181
>gb|AAL47058.1|AF326608_1 (AF326608) JHP318-like protein [Helicobacter pylori]
Length = 215
Score = 186 bits (472), Expect = 2e-46
Identities = 102/205 (49%), Positives = 132/205 (63%), Gaps = 5/205 (2%)
Query: 1 MLGNVKKTLFGVLCLGTLCLRG-LMAEPDAKELVNLGIESAKKQDFAQAKTHFEKACELK 59
MLG+ KK +F LCL + + G LMAEP+ +ELV+LG+ S KQDF++A+ +FE+AC L
Sbjct: 1 MLGSFKKAIFRALCLCCVLIGGGLMAEPNPEELVDLGMLSYDKQDFSKARKYFERACGLN 60
Query: 60 NGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKK 119
NG GC LG Y +G+GV K+L KA QFY+K CEL DG GC LG LY G+ V K+ K
Sbjct: 61 NGRGCNNLGVLYRDGQGVEKNLTKAAQFYSKACELKDGGGCGNLGVLYQKGEVVEKNLTK 120
Query: 120 ASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY 179
A+Q+YSKAC+L GC LG L+ G K+L KA LY KAC+LK+S GC +Y
Sbjct: 121 AAQFYSKACELKDGGGCGNLGVLYQKGEVVEKNLTKAAYLYSKACELKESFGCGALAVLY 180
Query: 180 ----SVTKNFKEAIVRYSKACELKD 200
V K+ +A SKAC+L D
Sbjct: 181 INGQGVEKDLTKADQYISKACKLGD 205
Score = 113 bits (283), Expect = 2e-24
Identities = 65/150 (43%), Positives = 81/150 (53%), Gaps = 8/150 (5%)
Query: 103 LGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEK 162
LG L Y+ Q D KA +Y+ +AC LN+ GC LG L+ G G K+L KA Y K
Sbjct: 36 LGMLSYDKQ----DFSKARKYFERACGLNNGRGCNNLGVLYRDGQGVEKNLTKAAQFYSK 91
Query: 163 ACDLKDSPGCINAGYIYS----VTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTA 218
AC+LKD GC N G +Y V KN +A YSKACELKDG GC NLGV+ +
Sbjct: 92 ACELKDGGGCGNLGVLYQKGEVVEKNLTKAAQFYSKACELKDGGGCGNLGVLYQKGEVVE 151
Query: 219 KDEKQAVENFKKGCKSSVKEACDALKELKI 248
K+ +A + K C+ C AL L I
Sbjct: 152 KNLTKAAYLYSKACELKESFGCGALAVLYI 181
Score = 98.2 bits (243), Expect = 7e-20
Identities = 50/105 (47%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
Query: 34 NLGIESAK----KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYT 89
NLG+ K +++ +A + KACELK+G GC LG Y++G+ V K+L KA Y+
Sbjct: 103 NLGVLYQKGEVVEKNLTKAAQFYSKACELKDGGGCGNLGVLYQKGEVVEKNLTKAAYLYS 162
Query: 90 KGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAE 134
K CEL + +GC L LY NGQGV KD KA QY SKAC L E
Sbjct: 163 KACELKESFGCGALAVLYINGQGVEKDLTKADQYISKACKLGDQE 207
Score = 46.2 bits (108), Expect = 3e-04
Identities = 22/71 (30%), Positives = 38/71 (52%)
Query: 173 INAGYIYSVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGC 232
++ G + ++F +A + +AC L +GRGC NLGV+ + QG K+ +A + + K C
Sbjct: 34 VDLGMLSYDKQDFSKARKYFERACGLNNGRGCNNLGVLYRDGQGVEKNLTKAAQFYSKAC 93
Query: 233 KSSVKEACDAL 243
+ C L
Sbjct: 94 ELKDGGGCGNL 104
>gb|AAM66149.1|AF326628_1 (AF326628) JHP1437-like protein [Helicobacter pylori]
Length = 310
Score = 181 bits (458), Expect = 9e-45
Identities = 109/286 (38%), Positives = 151/286 (52%), Gaps = 45/286 (15%)
Query: 1 MLGNVKKTLFGVLCLGTLCLRGLMAEPDAKELVNLGIESAKKQDFAQAKTHFEKACELKN 60
ML VKK +F VLCL LCL GLMAE + KEL+ GI +DF +AK +FEKAC L +
Sbjct: 1 MLRGVKKAVFRVLCLVALCLGGLMAESNPKELIFSGITIYTDKDFTRAKEYFEKACRLND 60
Query: 61 GFGCVFLGAFYEEG--KGVGK-----------------------------------DLKK 83
GC L Y + KG + DLK
Sbjct: 61 ADGCAILREAYSKVILKGSARESIEKALEHTATAKACKSNDAEKCKDLAEFYFNANDLKN 120
Query: 84 AIQFYTKGCELNDGYGCNLLGNLYYNG--QGVSKDAKKASQYYSKACDLNHAEGCMVLGS 141
A+++Y+K C+LN+ GC +L +YN +G+ KD KK +YYSKAC+LN+ +GC +LG
Sbjct: 121 ALEYYSKSCKLNNVEGC-MLSATFYNDMIKGLKKD-KKDLEYYSKACELNYGDGCAILGD 178
Query: 142 LHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKACE 197
++H G G ++ +KA Y KAC+L + GC G Y SVT++ K+A YSKACE
Sbjct: 179 IYHNGEGVTQNFKKAFKYYSKACELNNGEGCSKLGGDYFLGESVTQDLKKAFGYYSKACE 238
Query: 198 LKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEACDAL 243
L + C +G + +G KD K+A E K C+ + + C AL
Sbjct: 239 LNEALTCTLVGEFYRDGEGVTKDLKKAFEYSAKACELNDAKGCYAL 284
Score = 154 bits (390), Expect = 7e-37
Identities = 80/208 (38%), Positives = 121/208 (57%), Gaps = 6/208 (2%)
Query: 28 DAKELVNLGIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEG-KGVGKDLKKAIQ 86
DA++ +L D A ++ K+C+L N GC+ FY + KG+ KD KK ++
Sbjct: 101 DAEKCKDLAEFYFNANDLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKD-KKDLE 159
Query: 87 FYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYG 146
+Y+K CELN G GC +LG++Y+NG+GV+++ KKA +YYSKAC+LN+ EGC LG + G
Sbjct: 160 YYSKACELNYGDGCAILGDIYHNGEGVTQNFKKAFKYYSKACELNNGEGCSKLGGDYFLG 219
Query: 147 VGTPKDLRKALDLYEKACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKACELKDGR 202
+DL+KA Y KAC+L ++ C G Y VTK+ K+A +KACEL D +
Sbjct: 220 ESVTQDLKKAFGYYSKACELNEALTCTLVGEFYRDGEGVTKDLKKAFEYSAKACELNDAK 279
Query: 203 GCYNLGVMQYNAQGTAKDEKQAVENFKK 230
GCY L + + + + + K+
Sbjct: 280 GCYALAAFLMGVKALQRVKSKRPKTLKR 307
Score = 67.8 bits (164), Expect = 1e-10
Identities = 43/139 (30%), Positives = 69/139 (48%), Gaps = 9/139 (6%)
Query: 115 KDAKKASQYYSKACDLNHAEGCMVLGSLHHYGV---GTPKDLRKALD--LYEKACDLKDS 169
KD +A +Y+ KAC LN A+GC +L + + + + KAL+ KAC D+
Sbjct: 43 KDFTRAKEYFEKACRLNDADGCAILREAYSKVILKGSARESIEKALEHTATAKACKSNDA 102
Query: 170 PGCINAGYIYSVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYN--AQGTAKDEKQAVEN 227
C + Y + K A+ YSK+C+L + GC L YN +G KD+K +E
Sbjct: 103 EKCKDLAEFYFNANDLKNALEYYSKSCKLNNVEGCM-LSATFYNDMIKGLKKDKKD-LEY 160
Query: 228 FKKGCKSSVKEACDALKEL 246
+ K C+ + + C L ++
Sbjct: 161 YSKACELNYGDGCAILGDI 179
>ref|NP_222869.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71968 hypothetical protein jhp0148 - Helicobacter pylori (strain J99)
gb|AAD05729.1| (AE001453) putative [Helicobacter pylori J99]
Length = 305
Score = 172 bits (437), Expect = 2e-42
Identities = 79/206 (38%), Positives = 119/206 (57%), Gaps = 4/206 (1%)
Query: 43 QDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNL 102
Q+ ++A ++ + C L+N C LG+ YE+G GV KD KAI +Y +GC L G C
Sbjct: 78 QNISKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKDFPKAIYYYRRGCHLKGGVSCGS 137
Query: 103 LGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEK 162
LG +Y+NG GV ++ KA + AC LN+ C +G ++ G KDL+KAL +++
Sbjct: 138 LGFMYFNGTGVKQNYAKALSFSKYACSLNYGISCNFVGYMYKSAKGVEKDLKKALANFKR 197
Query: 163 ACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTA 218
C LKD C++ GY+Y V +N ++A+ Y K C LK+G GC+N+ VM Y +G
Sbjct: 198 GCHLKDGASCVSLGYLYEAGMDVKQNEEQALNLYKKGCSLKEGSGCHNVAVMYYTGKGAP 257
Query: 219 KDEKQAVENFKKGCKSSVKEACDALK 244
KD ++A +KKGC +C L+
Sbjct: 258 KDLEKATSYYKKGCALGFSGSCKVLE 283
Score = 118 bits (296), Expect = 5e-26
Identities = 65/193 (33%), Positives = 96/193 (49%), Gaps = 11/193 (5%)
Query: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCN 101
++DF +A ++ + C LK G C LG Y G GV ++ KA+ F C LN G CN
Sbjct: 113 QKDFPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALSFSKYACSLNYGISCN 172
Query: 102 LLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYE 161
+G +Y + +GV KD KKA + + C L C+ LG L+ G+ ++ +AL+LY+
Sbjct: 173 FVGYMYKSAKGVEKDLKKALANFKRGCHLKDGASCVSLGYLYEAGMDVKQNEEQALNLYK 232
Query: 162 KACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKACELKDGRGCYNLGV-------M 210
K C LK+ GC N +Y K+ ++A Y K C L C L V +
Sbjct: 233 KGCSLKEGSGCHNVAVMYYTGKGAPKDLEKATSYYKKGCALGFSGSCKVLEVIGKESDNL 292
Query: 211 QYNAQGTAKDEKQ 223
Q +AQ +D Q
Sbjct: 293 QDDAQNDTQDSVQ 305
Score = 58.2 bits (139), Expect = 8e-08
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 152 DLRKALDLYEKACDLKDSPGCINAGYIYS----VTKNFKEAIVRYSKACELKDGRGCYNL 207
D +A+ Y+++C+L+ GC + G +Y V +N +A+ Y + C L++ C +L
Sbjct: 43 DYHRAVAFYKRSCNLRMGVGCTSLGSMYEYGDGVDQNISKAVFYYRRGCNLRNHLACASL 102
Query: 208 GVMQYNAQGTAKDEKQAVENFKKGCKSSVKEACDAL 243
G M + G KD +A+ +++GC +C +L
Sbjct: 103 GSMYEDGDGVQKDFPKAIYYYRRGCHLKGGVSCGSL 138
>ref|NP_206959.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
pir||H64539 conserved hypothetical secreted protein HP0160 - Helicobacter
pylori (strain 26695)
gb|AAD07230.1| (AE000537) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 306
Score = 169 bits (429), Expect = 2e-41
Identities = 80/208 (38%), Positives = 119/208 (56%), Gaps = 4/208 (1%)
Query: 43 QDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNL 102
Q+ +A ++ + C L+N C LG+ YE+G GV K+L KAI +Y +GC L G C
Sbjct: 78 QNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGS 137
Query: 103 LGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEK 162
LG +Y+NG GV ++ KA AC LN+ C +G ++ G KDL+KAL +++
Sbjct: 138 LGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKR 197
Query: 163 ACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTA 218
C LKD C++ GY+Y V +N ++A+ Y K C LK G GC+N+ VM Y +G
Sbjct: 198 GCHLKDGASCVSLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVP 257
Query: 219 KDEKQAVENFKKGCKSSVKEACDALKEL 246
KD +A+ +KKGC +C L+E+
Sbjct: 258 KDLDKAISYYKKGCTLGFSGSCKVLEEV 285
Score = 107 bits (267), Expect = 1e-22
Identities = 53/131 (40%), Positives = 72/131 (54%)
Query: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCN 101
KQ++A+A + AC L G C F+G Y KGV KDLKKA+ + +GC L DG C
Sbjct: 149 KQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCV 208
Query: 102 LLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYE 161
LG +Y G V ++ ++A Y K C L GC + +++ G G PKDL KA+ Y+
Sbjct: 209 SLGYMYEVGMDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAISYYK 268
Query: 162 KACDLKDSPGC 172
K C L S C
Sbjct: 269 KGCTLGFSGSC 279
Score = 57.0 bits (136), Expect = 2e-07
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 152 DLRKALDLYEKACDLKDSPGCINAGYIYS----VTKNFKEAIVRYSKACELKDGRGCYNL 207
D KA+ Y+++C+L+ GC + G +Y V +N +A+ Y + C L++ C +L
Sbjct: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
Query: 208 GVMQYNAQGTAKDEKQAVENFKKGCKSSVKEACDAL 243
G M + G K+ +A+ +++GC +C +L
Sbjct: 103 GSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSL 138
>ref|NP_222941.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71958 hypothetical protein jhp0220 - Helicobacter pylori (strain J99)
gb|AAD05807.1| (AE001460) putative [Helicobacter pylori J99]
Length = 355
Score = 153 bits (386), Expect = 2e-36
Identities = 83/222 (37%), Positives = 130/222 (58%), Gaps = 12/222 (5%)
Query: 34 NLGI--ESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEG-KGVGKDLKKAIQFYTK 90
NLGI + K + AQA T+++K+C GC LG YE+G V + KA+ +Y K
Sbjct: 136 NLGIIYDRKIKGNAAQAVTYYQKSCNFDMAKGCYILGTAYEKGFLEVKQSNHKAVIYYLK 195
Query: 91 GCELNDGYGCNLLGNLYYNGQ-GVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGT 149
C LN+G C LG+L+ NG G+ +D + A Y KAC LN++ GC LGS++ G
Sbjct: 196 ACRLNEGQACRALGSLFENGDAGLDEDFEVAFDYLQKACALNNSGGCASLGSMYMLGRYV 255
Query: 150 PKDLRKALDLYEKACDLKDSPGCINAGYIYS----VTKNFKEAIVRYSKACELKDGRGCY 205
KD +KA + +++ACD+ + C G++YS V+K+ ++A+ Y + C++ D GC+
Sbjct: 256 KKDPQKAFNYFKQACDMGSAVSCSRMGFMYSQGDTVSKDLRKALDNYERGCDMGDEVGCF 315
Query: 206 NLGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEACDALKELK 247
L M YN KD++ A+ + KGCK +K+AC+ L +L+
Sbjct: 316 ALAGMYYN----MKDKENAIMIYDKGCKLGMKQACENLTKLR 353
Score = 120 bits (302), Expect = 1e-26
Identities = 69/217 (31%), Positives = 113/217 (51%), Gaps = 8/217 (3%)
Query: 33 VNLGIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGC 92
+ +G + K ++++A ++F+KAC GC LG YE G+G D KKA+++Y C
Sbjct: 31 LGIGERAYKSGNYSKAASYFKKACNDGVSEGCTQLGIIYENGQGTRIDYKKALEYYKTAC 90
Query: 93 ELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKD 152
+ +D GC LG LY G G +++ ++A Y+KAC L H E C LG + Y +
Sbjct: 91 QADDREGCFGLGGLYDEGLGTAQNYQEAIDAYAKACVLKHPESCYNLGII--YDRKIKGN 148
Query: 153 LRKALDLYEKACDLKDSPGCINAGYIY-----SVTKNFKEAIVRYSKACELKDGRGCYNL 207
+A+ Y+K+C+ + GC G Y V ++ +A++ Y KAC L +G+ C L
Sbjct: 149 AAQAVTYYQKSCNFDMAKGCYILGTAYEKGFLEVKQSNHKAVIYYLKACRLNEGQACRAL 208
Query: 208 GVMQYNAQ-GTAKDEKQAVENFKKGCKSSVKEACDAL 243
G + N G +D + A + +K C + C +L
Sbjct: 209 GSLFENGDAGLDEDFEVAFDYLQKACALNNSGGCASL 245
Score = 115 bits (289), Expect = 3e-25
Identities = 63/167 (37%), Positives = 85/167 (50%), Gaps = 3/167 (1%)
Query: 83 KAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSL 142
KA ++ K C GC LG +Y NGQG D KKA +YY AC + EGC LG L
Sbjct: 45 KAASYFKKACNDGVSEGCTQLGIIYENGQGTRIDYKKALEYYKTACQADDREGCFGLGGL 104
Query: 143 HHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY--SVTKNFKEAIVRYSKACELKD 200
+ G+GT ++ ++A+D Y KAC LK C N G IY + N +A+ Y K+C
Sbjct: 105 YDEGLGTAQNYQEAIDAYAKACVLKHPESCYNLGIIYDRKIKGNAAQAVTYYQKSCNFDM 164
Query: 201 GRGCYNLGVMQYNAQGTAKDEK-QAVENFKKGCKSSVKEACDALKEL 246
+GCY LG K +AV + K C+ + +AC AL L
Sbjct: 165 AKGCYILGTAYEKGFLEVKQSNHKAVIYYLKACRLNEGQACRALGSL 211
Score = 115 bits (289), Expect = 3e-25
Identities = 67/207 (32%), Positives = 105/207 (50%), Gaps = 8/207 (3%)
Query: 43 QDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNL 102
Q++ +A + KAC LK+ C LG Y+ + + + +A+ +Y K C + GC +
Sbjct: 113 QNYQEAIDAYAKACVLKHPESCYNLGIIYD--RKIKGNAAQAVTYYQKSCNFDMAKGCYI 170
Query: 103 LGNLYYNG-QGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYG-VGTPKDLRKALDLY 160
LG Y G V + KA YY KAC LN + C LGSL G G +D A D
Sbjct: 171 LGTAYEKGFLEVKQSNHKAVIYYLKACRLNEGQACRALGSLFENGDAGLDEDFEVAFDYL 230
Query: 161 EKACDLKDSPGCINAGYIYS----VTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQG 216
+KAC L +S GC + G +Y V K+ ++A + +AC++ C +G M
Sbjct: 231 QKACALNNSGGCASLGSMYMLGRYVKKDPQKAFNYFKQACDMGSAVSCSRMGFMYSQGDT 290
Query: 217 TAKDEKQAVENFKKGCKSSVKEACDAL 243
+KD ++A++N+++GC + C AL
Sbjct: 291 VSKDLRKALDNYERGCDMGDEVGCFAL 317
Score = 76.3 bits (186), Expect = 3e-13
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCN 101
K+D +A +F++AC++ + C +G Y +G V KDL+KA+ Y +GC++ D GC
Sbjct: 256 KKDPQKAFNYFKQACDMGSAVSCSRMGFMYSQGDTVSKDLRKALDNYERGCDMGDEVGCF 315
Query: 102 LLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHY 145
L +YYN KD + A Y K C L + C L L Y
Sbjct: 316 ALAGMYYN----MKDKENAIMIYDKGCKLGMKQACENLTKLRGY 355
>ref|NP_207033.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
pir||C64549 conserved hypothetical secreted protein HP0235 - Helicobacter
pylori (strain 26695)
gb|AAD07303.1| (AE000543) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 355
Score = 150 bits (378), Expect = 2e-35
Identities = 82/222 (36%), Positives = 128/222 (56%), Gaps = 12/222 (5%)
Query: 34 NLGI--ESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEG-KGVGKDLKKAIQFYTK 90
NLGI + K + QA T+++K+C GC LG YE+G V + KA+ +Y K
Sbjct: 136 NLGIIYDRKIKGNADQAVTYYQKSCNFDMAKGCYVLGVAYEKGFLEVKQSNHKAVIYYLK 195
Query: 91 GCELNDGYGCNLLGNLYYNGQ-GVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGT 149
C L+DG C LG+L+ NG G+ +D + A Y KAC LN++ GC LGS++ G
Sbjct: 196 ACRLDDGQACRALGSLFENGDAGLDEDFEVAFDYLQKACGLNNSGGCASLGSMYMLGRYV 255
Query: 150 PKDLRKALDLYEKACDLKDSPGCINAGYIYS----VTKNFKEAIVRYSKACELKDGRGCY 205
KD +KA + +++ACD+ + C G++YS V K+ ++A+ Y + C++ D GC+
Sbjct: 256 KKDPQKAFNFFKQACDMGSAVSCSRMGFMYSQGDAVPKDLRKALDNYERGCDMGDEVGCF 315
Query: 206 NLGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEACDALKELK 247
L M YN KD++ A+ + KGCK +K+AC+ L +L+
Sbjct: 316 ALAGMYYN----MKDKENAIMIYDKGCKLGMKQACENLTKLR 353
Score = 121 bits (303), Expect = 8e-27
Identities = 69/209 (33%), Positives = 110/209 (52%), Gaps = 8/209 (3%)
Query: 41 KKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGC 100
K ++++A ++F+KAC GC LG YE G+G D KKA+++Y C+ +D GC
Sbjct: 39 KSGNYSKATSYFKKACNDGVSEGCTQLGIIYENGQGTRIDYKKALEYYKTACQADDREGC 98
Query: 101 NLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLY 160
LG LY G G +++ ++A Y+KAC L H E C LG ++ + D +A+ Y
Sbjct: 99 FGLGGLYDEGLGTTQNYQEAIDAYAKACVLKHPESCYNLGIIYDRKIKGNAD--QAVTYY 156
Query: 161 EKACDLKDSPGCINAGYIY-----SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQ 215
+K+C+ + GC G Y V ++ +A++ Y KAC L DG+ C LG + N
Sbjct: 157 QKSCNFDMAKGCYVLGVAYEKGFLEVKQSNHKAVIYYLKACRLDDGQACRALGSLFENGD 216
Query: 216 -GTAKDEKQAVENFKKGCKSSVKEACDAL 243
G +D + A + +K C + C +L
Sbjct: 217 AGLDEDFEVAFDYLQKACGLNNSGGCASL 245
Score = 116 bits (291), Expect = 2e-25
Identities = 64/167 (38%), Positives = 85/167 (50%), Gaps = 3/167 (1%)
Query: 83 KAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSL 142
KA ++ K C GC LG +Y NGQG D KKA +YY AC + EGC LG L
Sbjct: 45 KATSYFKKACNDGVSEGCTQLGIIYENGQGTRIDYKKALEYYKTACQADDREGCFGLGGL 104
Query: 143 HHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY--SVTKNFKEAIVRYSKACELKD 200
+ G+GT ++ ++A+D Y KAC LK C N G IY + N +A+ Y K+C
Sbjct: 105 YDEGLGTTQNYQEAIDAYAKACVLKHPESCYNLGIIYDRKIKGNADQAVTYYQKSCNFDM 164
Query: 201 GRGCYNLGVMQYNAQGTAKDEK-QAVENFKKGCKSSVKEACDALKEL 246
+GCY LGV K +AV + K C+ +AC AL L
Sbjct: 165 AKGCYVLGVAYEKGFLEVKQSNHKAVIYYLKACRLDDGQACRALGSL 211
Score = 112 bits (279), Expect = 5e-24
Identities = 66/207 (31%), Positives = 104/207 (49%), Gaps = 8/207 (3%)
Query: 43 QDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNL 102
Q++ +A + KAC LK+ C LG Y+ + + + +A+ +Y K C + GC +
Sbjct: 113 QNYQEAIDAYAKACVLKHPESCYNLGIIYD--RKIKGNADQAVTYYQKSCNFDMAKGCYV 170
Query: 103 LGNLYYNG-QGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYG-VGTPKDLRKALDLY 160
LG Y G V + KA YY KAC L+ + C LGSL G G +D A D
Sbjct: 171 LGVAYEKGFLEVKQSNHKAVIYYLKACRLDDGQACRALGSLFENGDAGLDEDFEVAFDYL 230
Query: 161 EKACDLKDSPGCINAGYIYS----VTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQG 216
+KAC L +S GC + G +Y V K+ ++A + +AC++ C +G M
Sbjct: 231 QKACGLNNSGGCASLGSMYMLGRYVKKDPQKAFNFFKQACDMGSAVSCSRMGFMYSQGDA 290
Query: 217 TAKDEKQAVENFKKGCKSSVKEACDAL 243
KD ++A++N+++GC + C AL
Sbjct: 291 VPKDLRKALDNYERGCDMGDEVGCFAL 317
Score = 75.1 bits (183), Expect = 7e-13
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCN 101
K+D +A F++AC++ + C +G Y +G V KDL+KA+ Y +GC++ D GC
Sbjct: 256 KKDPQKAFNFFKQACDMGSAVSCSRMGFMYSQGDAVPKDLRKALDNYERGCDMGDEVGCF 315
Query: 102 LLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHY 145
L +YYN KD + A Y K C L + C L L Y
Sbjct: 316 ALAGMYYN----MKDKENAIMIYDKGCKLGMKQACENLTKLRGY 355
>gb|AAL47060.1|AF326611_1 (AF326611) JHP318-like protein [Helicobacter pylori]
Length = 131
Score = 145 bits (366), Expect = 4e-34
Identities = 72/131 (54%), Positives = 87/131 (65%)
Query: 35 LGIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCEL 94
+G++S K +DF QAK +FEKAC L G GC LG YE +GV K+L K FY+K C+L
Sbjct: 1 MGVKSNKAKDFTQAKKYFEKACNLNYGRGCGSLGDLYENDQGVEKNLTKVAYFYSKACDL 60
Query: 95 NDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLR 154
N+G GC LG LY G+GV KD KA+QY SKACDLN+ GC VLG L+ G G K+L
Sbjct: 61 NNGVGCKNLGFLYEYGEGVEKDLIKATQYASKACDLNNGSGCDVLGFLYGSGKGVEKNLT 120
Query: 155 KALDLYEKACD 165
KA Y KACD
Sbjct: 121 KAAYFYSKACD 131
Score = 117 bits (293), Expect = 1e-25
Identities = 59/123 (47%), Positives = 74/123 (59%), Gaps = 4/123 (3%)
Query: 79 KDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMV 138
KD +A +++ K C LN G GC LG+LY N QGV K+ K + +YSKACDLN+ GC
Sbjct: 9 KDFTQAKKYFEKACNLNYGRGCGSLGDLYENDQGVEKNLTKVAYFYSKACDLNNGVGCKN 68
Query: 139 LGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSK 194
LG L+ YG G KDL KA KACDL + GC G++Y V KN +A YSK
Sbjct: 69 LGFLYEYGEGVEKDLIKATQYASKACDLNNGSGCDVLGFLYGSGKGVEKNLTKAAYFYSK 128
Query: 195 ACE 197
AC+
Sbjct: 129 ACD 131
Score = 91.7 bits (226), Expect = 7e-18
Identities = 47/123 (38%), Positives = 68/123 (55%), Gaps = 4/123 (3%)
Query: 114 SKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCI 173
+KD +A +Y+ KAC+LN+ GC LG L+ G K+L K Y KACDL + GC
Sbjct: 8 AKDFTQAKKYFEKACNLNYGRGCGSLGDLYENDQGVEKNLTKVAYFYSKACDLNNGVGCK 67
Query: 174 NAGYIY----SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFK 229
N G++Y V K+ +A SKAC+L +G GC LG + + +G K+ +A +
Sbjct: 68 NLGFLYEYGEGVEKDLIKATQYASKACDLNNGSGCDVLGFLYGSGKGVEKNLTKAAYFYS 127
Query: 230 KGC 232
K C
Sbjct: 128 KAC 130
Score = 65.9 bits (159), Expect = 4e-10
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 151 KDLRKALDLYEKACDLKDSPGCINAGYIYS----VTKNFKEAIVRYSKACELKDGRGCYN 206
KD +A +EKAC+L GC + G +Y V KN + YSKAC+L +G GC N
Sbjct: 9 KDFTQAKKYFEKACNLNYGRGCGSLGDLYENDQGVEKNLTKVAYFYSKACDLNNGVGCKN 68
Query: 207 LGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEACDAL 243
LG + +G KD +A + K C + CD L
Sbjct: 69 LGFLYEYGEGVEKDLIKATQYASKACDLNNGSGCDVL 105
>gb|AAL47063.1|AF326616_1 (AF326616) JHP1024-like protein [Helicobacter pylori]
Length = 122
Score = 125 bits (315), Expect = 3e-28
Identities = 66/123 (53%), Positives = 83/123 (66%), Gaps = 3/123 (2%)
Query: 1 MLGNVKKTLFGVLCLGTLCLR--GLMAEPDAKELVNLGIESAKKQDFAQAKTHFEKACEL 58
ML N KK +F LCL LC+ GLMAEP+ KEL +LG+E+ K +D+ +AK +FEKACEL
Sbjct: 1 MLENFKKAIFRALCL-LLCVDWGGLMAEPNPKELFDLGVENYKAKDYIKAKKYFEKACEL 59
Query: 59 KNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAK 118
K+G GC LG Y G+GV KD KKA + K C+LN+ GC LG LY GQGV K+
Sbjct: 60 KDGGGCFNLGRLYYYGEGVEKDFKKAFALFEKACDLNNSGGCGTLGMLYEFGQGVEKNLT 119
Query: 119 KAS 121
KA+
Sbjct: 120 KAT 122
Score = 75.1 bits (183), Expect = 7e-13
Identities = 37/79 (46%), Positives = 48/79 (59%), Gaps = 4/79 (5%)
Query: 114 SKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCI 173
+KD KA +Y+ KAC+L GC LG L++YG G KD +KA L+EKACDL +S GC
Sbjct: 43 AKDYIKAKKYFEKACELKDGGGCFNLGRLYYYGEGVEKDFKKAFALFEKACDLNNSGGCG 102
Query: 174 NAGYIY----SVTKNFKEA 188
G +Y V KN +A
Sbjct: 103 TLGMLYEFGQGVEKNLTKA 121
Score = 64.7 bits (156), Expect = 9e-10
Identities = 33/78 (42%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 151 KDLRKALDLYEKACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKACELKDGRGCYN 206
KD KA +EKAC+LKD GC N G +Y V K+FK+A + KAC+L + GC
Sbjct: 44 KDYIKAKKYFEKACELKDGGGCFNLGRLYYYGEGVEKDFKKAFALFEKACDLNNSGGCGT 103
Query: 207 LGVMQYNAQGTAKDEKQA 224
LG++ QG K+ +A
Sbjct: 104 LGMLYEFGQGVEKNLTKA 121
Score = 55.5 bits (132), Expect = 5e-07
Identities = 26/61 (42%), Positives = 36/61 (58%)
Query: 183 KNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEACDA 242
K++ +A + KACELKDG GC+NLG + Y +G KD K+A F+K C + C
Sbjct: 44 KDYIKAKKYFEKACELKDGGGCFNLGRLYYYGEGVEKDFKKAFALFEKACDLNNSGGCGT 103
Query: 243 L 243
L
Sbjct: 104 L 104
>ref|NP_207134.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64561 invalid gene - Helicobacter pylori (strain 26695)
gb|AAD07408.1| (AE000551) H. pylori predicted coding region HP0336 [Helicobacter
pylori 26695]
Length = 138
Score = 113 bits (283), Expect = 2e-24
Identities = 56/131 (42%), Positives = 79/131 (59%), Gaps = 6/131 (4%)
Query: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCN 101
K+D +A ++ KACEL FGC+ L + + K +K Q+ +K CELN G GC
Sbjct: 8 KKDLKKAIQYYVKACELNEMFGCLSLVSNSQINK------QKLFQYLSKACELNSGNGCR 61
Query: 102 LLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYE 161
LG+ Y NG+ V KD +KA+QYYSKAC LN +GC++LG + G G K+ ++A+ +E
Sbjct: 62 FLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFE 121
Query: 162 KACDLKDSPGC 172
KAC L C
Sbjct: 122 KACRLGSEDAC 132
Score = 109 bits (272), Expect = 3e-23
Identities = 62/136 (45%), Positives = 73/136 (53%), Gaps = 12/136 (8%)
Query: 74 GKGVGKDLKKAIQFYTKGCELNDGYGC-NLLGNLYYNGQGVSKDAKKASQYYSKACDLNH 132
G V KDLKKAIQ+Y K CELN+ +GC +L+ N N Q K QY SKAC+LN
Sbjct: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQ-------KLFQYLSKACELNS 56
Query: 133 AEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY----SVTKNFKEA 188
GC LG + G KDLRKA Y KAC L D GC+ GY V KN K+A
Sbjct: 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQA 116
Query: 189 IVRYSKACELKDGRGC 204
+ + KAC L C
Sbjct: 117 VKTFEKACRLGSEDAC 132
Score = 99.0 bits (245), Expect = 4e-20
Identities = 57/138 (41%), Positives = 73/138 (52%), Gaps = 10/138 (7%)
Query: 110 GQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDS 169
G V KD KKA QYY KAC+LN GC+ L S + + +K KAC+L
Sbjct: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVS------NSQINKQKLFQYLSKACELNSG 57
Query: 170 PGCINAGYIYS----VTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAV 225
GC G Y V K+ ++A YSKAC L D GC LG QY +G K+EKQAV
Sbjct: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
Query: 226 ENFKKGCKSSVKEACDAL 243
+ F+K C+ ++AC L
Sbjct: 118 KTFEKACRLGSEDACGIL 135
Score = 96.7 bits (239), Expect = 2e-19
Identities = 46/91 (50%), Positives = 60/91 (65%)
Query: 51 HFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNG 110
+ KACEL +G GC FLG FYE GK V KDL+KA Q+Y+K C LND GC +LG Y G
Sbjct: 47 YLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAG 106
Query: 111 QGVSKDAKKASQYYSKACDLNHAEGCMVLGS 141
+GV K+ K+A + + KAC L + C +L +
Sbjct: 107 KGVVKNEKQAVKTFEKACRLGSEDACGILNN 137
Score = 51.2 bits (121), Expect = 1e-05
Identities = 24/64 (37%), Positives = 36/64 (55%)
Query: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCN 101
K+D +A ++ KAC L + GC+ LG GKGV K+ K+A++ + K C L C
Sbjct: 74 KKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACG 133
Query: 102 LLGN 105
+L N
Sbjct: 134 ILNN 137
>ref|NP_223289.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71914 hypothetical protein jhp0571 - Helicobacter pylori (strain J99)
gb|AAD06154.1| (AE001490) putative [Helicobacter pylori J99]
Length = 352
Score = 109 bits (272), Expect = 3e-23
Identities = 69/224 (30%), Positives = 102/224 (44%), Gaps = 8/224 (3%)
Query: 28 DAKELVNLGIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQF 87
+A+ ++ GI+ AKK D+ A F ++C+ N GC +GA Y G G+ + KA ++
Sbjct: 66 NAQTELSAGIDLAKKGDYQGAFKLFSQSCDNGNAAGCFAVGAMYANGVGIQTNRLKAARY 125
Query: 88 YTKGCELNDGYGCNLLGNLYYNGQGV-SKDAKKASQYYSKACDLNHAEGCMVLGSLHHYG 146
Y GC D C L +Y N + S D + A Q Y+ AC C LG + G
Sbjct: 126 YEMGCSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANG 185
Query: 147 VGTPKDLRKALDLYEKACDLKDSPGCINAGY------IYSVTKNFKEAIVRYSKACELKD 200
G PKD KA+ Y+ +C+ + GC N G IY + K + AC D
Sbjct: 186 SGVPKDYYKAMSYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGD 245
Query: 201 GRGCYNLGVMQYNAQ-GTAKDEKQAVENFKKGCKSSVKEACDAL 243
GC NLG + N G + A + F+ C + +C+ L
Sbjct: 246 MMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNL 289
Score = 76.3 bits (186), Expect = 3e-13
Identities = 49/155 (31%), Positives = 72/155 (45%), Gaps = 10/155 (6%)
Query: 39 SAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGK--GVGKDLKKAIQFYTKGCELND 96
S +D+ +A ++++ +CE N GC LG G+ K + C D
Sbjct: 186 SGVPKDYYKAMSYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGD 245
Query: 97 GYGCNLLGNLYYNGQ-GVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRK 155
GC LG +Y NG G + A++Y+ ACD C LG L+ G+G P+D ++
Sbjct: 246 MMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQR 305
Query: 156 ALDLYEKACDLKDSPGCINAGYIYSVTKNFKEAIV 190
ALDL+ ACD C N G NFKE ++
Sbjct: 306 ALDLFSYACDNGFESSCRNYG-------NFKEHLL 333
>gb|AAB47276.1| (U86608) 29 kDa protein [Helicobacter pylori]
Length = 256
Score = 107 bits (267), Expect = 1e-22
Identities = 69/238 (28%), Positives = 112/238 (46%), Gaps = 10/238 (4%)
Query: 13 LCLGTLCLRGLMAEPDAKELVNL---GIESAKKQDFAQAKTHFEKACELKNGFGCVFLGA 69
+CL +LCL + ++ N G E+ +++ +A + ++ A + V LG
Sbjct: 11 ICLASLCLFSALGAEHLEQKRNYIYKGEEAYNNKEYERAASFYKSAIKNGEPLAYVLLGI 70
Query: 70 FYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACD 129
YE G+GV KD KKA +++ K + + G N LG +Y G+GV KD KKA +Y+ A +
Sbjct: 71 MYENGRGVPKDYKKAAEYFQKAVDNDIPRGYNNLGVMYKEGRGVPKDEKKAVEYFRIATE 130
Query: 130 LNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY-------SVT 182
+A + LG ++ G G P + KA + + KA + I G IY +
Sbjct: 131 KGYANAYINLGIMYMEGRGVPSNYVKATECFRKAMHKGNVEAYILLGDIYYSGNDQLGIE 190
Query: 183 KNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEAC 240
+ +AIV Y A ++ R L G KD+K+A E +K C + + C
Sbjct: 191 PDKDKAIVYYKMAADMSSSRAYEGLAESYRYGLGVEKDKKKAEEYMQKACDFDIDKNC 248
>ref|NP_207908.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
pir||E64659 conserved hypothetical secreted protein HP1117 - Helicobacter
pylori (strain 26695)
gb|AAD08161.1| (AE000618) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 256
Score = 105 bits (262), Expect = 5e-22
Identities = 68/238 (28%), Positives = 111/238 (46%), Gaps = 10/238 (4%)
Query: 13 LCLGTLCLRGLMAEPDAKELVNL---GIESAKKQDFAQAKTHFEKACELKNGFGCVFLGA 69
+CL +LCL + ++ N G E+ +++ +A + ++ A + V LG
Sbjct: 11 ICLASLCLFSALGAEHLEQKRNYIYKGEEAYNNKEYERAASFYKSAIKNGEPLAYVLLGI 70
Query: 70 FYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACD 129
YE G+GV KD KKA +++ K + + G N LG +Y G+GV KD KKA +Y+ A +
Sbjct: 71 MYENGRGVPKDEKKAAEYFQKAVDNDIPRGYNNLGVMYKEGRGVPKDEKKAVEYFRIATE 130
Query: 130 LNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY-------SVT 182
+ + LG ++ G G P + KA + + KA + I G IY +
Sbjct: 131 KGYTNAYINLGIMYMEGRGVPSNYVKATECFRKAMHKGNVEAYILLGDIYYSGNDQLGIE 190
Query: 183 KNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEAC 240
+ +AIV Y A ++ R L G KD+K+A E +K C + + C
Sbjct: 191 PDKDKAIVYYKMAADMSSSRAYEGLAESYQYGLGVEKDKKKAEEYMQKACDFDIDKNC 248
>ref|NP_223762.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71856 hypothetical protein jhp1045 - Helicobacter pylori (strain J99)
gb|AAD06623.1| (AE001532) putative [Helicobacter pylori J99]
Length = 256
Score = 105 bits (262), Expect = 5e-22
Identities = 66/238 (27%), Positives = 111/238 (45%), Gaps = 10/238 (4%)
Query: 13 LCLGTLCLRGLMAEPDAKELVNL---GIESAKKQDFAQAKTHFEKACELKNGFGCVFLGA 69
+CL LCL + ++ N G E+ +++ +A + ++ A + + LG
Sbjct: 11 ICLVGLCLFSTLGAEHLEQKGNYIYKGEEAYNNKEYERAASFYKSAIKNGESLAYILLGI 70
Query: 70 FYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACD 129
YE G+GV KD KKA++++ K + + G N LG +Y G+GV KD KKA +Y+ A +
Sbjct: 71 MYENGRGVPKDYKKAVEYFQKAVDNDIPRGYNNLGVMYKEGKGVPKDEKKAVEYFRIATE 130
Query: 130 LNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY-------SVT 182
+ + LG ++ G G P + KA + + KA + I G IY +
Sbjct: 131 KGYTNAYINLGIMYMEGRGVPSNYAKATECFRKAMHKGNVEAYILLGDIYYSGNDQLGIE 190
Query: 183 KNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEAC 240
+ +A+V Y A ++ R L G KD+K+A E +K C + + C
Sbjct: 191 PDKDKAVVYYKMAADVSSSRAYEGLSESYRYGLGVEKDKKKAEEYMQKACDFDIDKNC 248
>ref|NP_281603.1| (NC_002163) putative periplasmic protein [Campylobacter jejuni]
pir||C81385 probable periplasmic protein Cj0413 [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB74249.1| (AL139075) putative periplasmic protein [Campylobacter jejuni]
Length = 234
Score = 101 bits (252), Expect = 7e-21
Identities = 70/215 (32%), Positives = 102/215 (46%), Gaps = 15/215 (6%)
Query: 36 GIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELN 95
G++ + F +A F+ CE C L +E +GV KDL +A +FY K C+L
Sbjct: 23 GLKLYEANKFDKAYEIFKSLCEKDISKACFSLAFMHESARGVSKDLNQAYKFYDKACKLG 82
Query: 96 DGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRK 155
C+ + L N QG +A A ++KAC L + C + + KD +
Sbjct: 83 LANACSNMALLLQN-QGYENEALLA---FNKACTLGESLSCNNIALFYE----KEKDGQM 134
Query: 156 ALDLYEKACDLKDSPGCINAGYIYS----VTKNFKEAIVRYSKACELKDGRGCYNLGVMQ 211
A Y+++CDLK++ C G +Y V + K A+ YSK+C L G CY LG +
Sbjct: 135 ASSFYKRSCDLKNARACYQLGSLYDKGELVKASVKSALAFYSKSCTLGFGEACYLLG--R 192
Query: 212 YNAQGTAKDEKQAVENFKKGCKSSVKEACDALKEL 246
YN Q +D +A F C +EAC A KEL
Sbjct: 193 YN-QLEKQDLTKAKRYFGMACDQKHQEACAAYKEL 226
Score = 81.6 bits (200), Expect = 7e-15
Identities = 54/181 (29%), Positives = 83/181 (45%), Gaps = 6/181 (3%)
Query: 62 FGCVFLGAFYEEGKGVGKDLK--KAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKK 119
F +F + EEG + + K KA + + CE + C L ++ + +GVSKD +
Sbjct: 11 FNSLFALSELEEGLKLYEANKFDKAYEIFKSLCEKDISKACFSLAFMHESARGVSKDLNQ 70
Query: 120 ASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY 179
A ++Y KAC L A C + L + +AL + KAC L +S C N Y
Sbjct: 71 AYKFYDKACKLGLANACSNMALL----LQNQGYENEALLAFNKACTLGESLSCNNIALFY 126
Query: 180 SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEA 239
K+ + A Y ++C+LK+ R CY LG + + K A+ + K C EA
Sbjct: 127 EKEKDGQMASSFYKRSCDLKNARACYQLGSLYDKGELVKASVKSALAFYSKSCTLGFGEA 186
Query: 240 C 240
C
Sbjct: 187 C 187
Score = 78.2 bits (191), Expect = 8e-14
Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 34 NLGIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCE 93
N+ + K++D A + ++++C+LKN C LG+ Y++G+ V +K A+ FY+K C
Sbjct: 121 NIALFYEKEKDGQMASSFYKRSCDLKNARACYQLGSLYDKGELVKASVKSALAFYSKSCT 180
Query: 94 LNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLH 143
L G C LLG YN Q +D KA +Y+ ACD H E C L+
Sbjct: 181 LGFGEACYLLGR--YN-QLEKQDLTKAKRYFGMACDQKHQEACAAYKELN 227
>ref|NP_586349.1| (NC_003237) similarity to SKT5 PROTEIN [Encephalitozoon cuniculi]
emb|CAD25953.1| (AL590450) similarity to SKT5 PROTEIN [Encephalitozoon cuniculi]
Length = 590
Score = 98.6 bits (244), Expect = 6e-20
Identities = 60/196 (30%), Positives = 96/196 (48%), Gaps = 4/196 (2%)
Query: 52 FEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQ 111
F+ A E K+ +G YEEG+GV ++L KA + Y ++ + Y N LGN Y G+
Sbjct: 196 FKYASEKKDSTALYNIGFCYEEGRGVERNLIKAFEMYRLSAKMENSYAQNALGNCYEEGK 255
Query: 112 GVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPG 171
GV +D +KA + Y K+ + G L + G+GT ++L KA + Y++A S
Sbjct: 256 GVDRDLQKAFELYKKSALQGYPSGQCNLAFCYQKGIGTERNLEKAFEWYKRAAIQGLSRA 315
Query: 172 CINAGYIY----SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVEN 227
N GY Y + + A+ Y ++ + + LGV + G KDE+ AV
Sbjct: 316 KHNIGYCYQNGLGTSPCMRSAVNWYKESAAEDNKYSIHALGVCYQHGYGVPKDERLAVRY 375
Query: 228 FKKGCKSSVKEACDAL 243
F +G ++ EA +L
Sbjct: 376 FSEGVRAGFDEAIISL 391
Score = 67.4 bits (163), Expect = 1e-10
Identities = 46/181 (25%), Positives = 82/181 (44%), Gaps = 4/181 (2%)
Query: 67 LGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSK 126
LG + +G GV ++ + A++ + E D +G Y G+GV ++ KA + Y
Sbjct: 175 LGYCFLKGFGVERNEEIAVELFKYASEKKDSTALYNIGFCYEEGRGVERNLIKAFEMYRL 234
Query: 127 ACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY----SVT 182
+ + ++ LG+ + G G +DL+KA +LY+K+ G N + Y
Sbjct: 235 SAKMENSYAQNALGNCYEEGKGVDRDLQKAFELYKKSALQGYPSGQCNLAFCYQKGIGTE 294
Query: 183 KNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEACDA 242
+N ++A Y +A R +N+G N GT+ + AV +K+ K + A
Sbjct: 295 RNLEKAFEWYKRAAIQGLSRAKHNIGYCYQNGLGTSPCMRSAVNWYKESAAEDNKYSIHA 354
Query: 243 L 243
L
Sbjct: 355 L 355
Score = 66.2 bits (160), Expect = 3e-10
Identities = 37/163 (22%), Positives = 72/163 (43%), Gaps = 4/163 (2%)
Query: 67 LGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSK 126
+G Y+ G G ++ A+ +Y + ++ Y + LG Y +G GV KD + A +Y+S+
Sbjct: 319 IGYCYQNGLGTSPCMRSAVNWYKESAAEDNKYSIHALGVCYQHGYGVPKDERLAVRYFSE 378
Query: 127 ACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYI----YSVT 182
E + L + G+G K+ L ++A ++ +S GY Y
Sbjct: 379 GVRAGFDEAIISLALCYRSGIGVRISPEKSFALMKRAAEMNNSSAQNTLGYYYEEGYGTP 438
Query: 183 KNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAV 225
KN ++A+ Y + + + +NL + N D++ +
Sbjct: 439 KNLRKAVKWYETSAKRNNSWALFNLSTLYLNGNHVPADKELGI 481
Score = 63.9 bits (154), Expect = 2e-09
Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 5/191 (2%)
Query: 53 EKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQG 112
E A E N + LG Y+ G GV KD + A++++++G L Y +G G
Sbjct: 342 ESAAE-DNKYSIHALGVCYQHGYGVPKDERLAVRYFSEGVRAGFDEAIISLALCYRSGIG 400
Query: 113 VSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGC 172
V +K+ +A ++N++ LG + G GTPK+LRKA+ YE + +S
Sbjct: 401 VRISPEKSFALMKRAAEMNNSSAQNTLGYYYEEGYGTPKNLRKAVKWYETSAKRNNSWAL 460
Query: 173 INAGYIY----SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENF 228
N +Y V + + I ++ +L + R LG KD + A E++
Sbjct: 461 FNLSTLYLNGNHVPADKELGIRLLIRSRDLGNPRAMNTLGYCFEKGIVVGKDPRLAFEHY 520
Query: 229 KKGCKSSVKEA 239
+ + +A
Sbjct: 521 TQALMNGYSKA 531
Score = 57.8 bits (138), Expect = 1e-07
Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 40/165 (24%)
Query: 35 LGIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCEL 94
+G+ + ++ FA K +A E+ N LG +YEEG G K+L+KA+++Y +
Sbjct: 399 IGVRISPEKSFALMK----RAAEMNNSSAQNTLGYYYEEGYGTPKNLRKAVKWYETSAKR 454
Query: 95 NDGYGCNLLGNLYYNGQGV------------------------------------SKDAK 118
N+ + L LY NG V KD +
Sbjct: 455 NNSWALFNLSTLYLNGNHVPADKELGIRLLIRSRDLGNPRAMNTLGYCFEKGIVVGKDPR 514
Query: 119 KASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKA 163
A ++Y++A +++ LG + G+GT DL KAL + KA
Sbjct: 515 LAFEHYTQALMNGYSKAGYSLGRCYESGIGTEVDLDKALYYFYKA 559
Score = 53.1 bits (126), Expect = 3e-06
Identities = 59/256 (23%), Positives = 93/256 (36%), Gaps = 60/256 (23%)
Query: 31 ELVNLGIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAF-YEEGKGVGKDLKKAIQFYT 89
++V LG+ K ++ K H E + N + AF YE G G D+KKA YT
Sbjct: 19 DVVLLGVGREKNEELG-LKMHLENSARDANSLA---VSAFCYEFGIGTSVDMKKAEMRYT 74
Query: 90 KGCELNDG---------------------------------------------------Y 98
K ++G Y
Sbjct: 75 KAALSDNGLALIRLAFIRRFGRPTATIDRREAKRYLDKLKRLGRRGVEWLVYANKHGNLY 134
Query: 99 GCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALD 158
LG Y G GV D A +YYS+ + +LG G G ++ A++
Sbjct: 135 ARYCLGVCYQEGYGVPVDPLLAVKYYSEGAYEGNTCSIGILGYCFLKGFGVERNEEIAVE 194
Query: 159 LYEKACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNA 214
L++ A + KDS N G+ Y V +N +A Y + ++++ LG
Sbjct: 195 LFKYASEKKDSTALYNIGFCYEEGRGVERNLIKAFEMYRLSAKMENSYAQNALGNCYEEG 254
Query: 215 QGTAKDEKQAVENFKK 230
+G +D ++A E +KK
Sbjct: 255 KGVDRDLQKAFELYKK 270
>ref|NP_207422.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64598 hypothetical protein HP0628 - Helicobacter pylori (strain 26695)
gb|AAD07699.1| (AE000577) H. pylori predicted coding region HP0628 [Helicobacter
pylori 26695]
Length = 225
Score = 94.4 bits (233), Expect = 1e-18
Identities = 59/193 (30%), Positives = 86/193 (43%), Gaps = 8/193 (4%)
Query: 56 CELKNGFGCVFLGAFYEEGKGV-GKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVS 114
C + C L YE K D + A+Q Y C+ D CN LG ++ NG GV
Sbjct: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
Query: 115 KDAKKASQYYSKACDLNHAEGCMVLGSLHHYG--VGTPKDLRKALDLYEKACDLKDSPGC 172
KD KA YY +C+ + GC LG + + G K +DL AC+ D GC
Sbjct: 63 KDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGC 122
Query: 173 INAGYIYS-----VTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVEN 227
N G+IY+ N A + AC+ C NLGV+ G +D+++A++
Sbjct: 123 ANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDL 182
Query: 228 FKKGCKSSVKEAC 240
F C + + +C
Sbjct: 183 FSYACDNGFESSC 195
Score = 77.4 bits (189), Expect = 1e-13
Identities = 50/156 (32%), Positives = 73/156 (46%), Gaps = 10/156 (6%)
Query: 39 SAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGK--GVGKDLKKAIQFYTKGCELND 96
S +D+ +A ++++ +CE N GC LG G+ K + C D
Sbjct: 59 SGVPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGD 118
Query: 97 GYGCNLLGNLYYNGQ-GVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRK 155
GC LG +Y NG G + A++Y+ ACD C LG L+ G+G P+D ++
Sbjct: 119 MMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQR 178
Query: 156 ALDLYEKACDLKDSPGCINAGYIYSVTKNFKEAIVR 191
ALDL+ ACD C N G NFKE ++R
Sbjct: 179 ALDLFSYACDNGFESSCRNYG-------NFKEHLLR 207
>ref|NP_459646.1| (NC_003197) putative TPR repeat protein [Salmonella typhimurium
LT2]
gb|AAL19605.1| (AE008726) putative TPR repeat protein [Salmonella typhimurium LT2]
Length = 331
Score = 87.4 bits (215), Expect = 1e-16
Identities = 56/217 (25%), Positives = 102/217 (46%), Gaps = 4/217 (1%)
Query: 38 ESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDG 97
E+ D+AQA + K E + LG Y G GV ++ +A+ ++ +
Sbjct: 113 ETGMAPDYAQAVAWYRKGAEQSHNLAQYNLGRMYHSGTGVEQNDTQALYWFKQAALQGHC 172
Query: 98 YGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKAL 157
L +Y NG+G K+ A+ +Y K+ + +G ++ G G +D ++A+
Sbjct: 173 ASQERLAYMYGNGKGCRKNLSLAALWYKKSALQESSYSQYQMGYCYYIGKGIKQDYQQAI 232
Query: 158 DLYEKACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYN 213
+ KA D D + G++Y V +N+ A+ + K+ E + G YNLG M +
Sbjct: 233 YWFRKAADQGDDDAYNSIGWMYKCGHGVEQNYSLALEWFHKSAECNNSSGWYNLGCMYRD 292
Query: 214 AQGTAKDEKQAVENFKKGCKSSVKEACDALKELKIEL 250
GTA+D +QA+ FKK + + +++L+ +L
Sbjct: 293 GHGTAQDLQQALYWFKKAQPTGKWNVDEEIRKLEAQL 329
Score = 52.4 bits (124), Expect = 5e-06
Identities = 41/182 (22%), Positives = 77/182 (41%), Gaps = 4/182 (2%)
Query: 66 FLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYS 125
+LG Y++ KD A+ + K + + N LG + G++ D +A +Y
Sbjct: 69 WLGLRYKDTPTDMKDNTLALFWSEKAAQQGHRHAFNTLGWVQEGETGMAPDYAQAVAWYR 128
Query: 126 KACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY----SV 181
K + +H LG ++H G G ++ +AL +++A Y+Y
Sbjct: 129 KGAEQSHNLAQYNLGRMYHSGTGVEQNDTQALYWFKQAALQGHCASQERLAYMYGNGKGC 188
Query: 182 TKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEACD 241
KN A + Y K+ + Y +G Y +G +D +QA+ F+K +A +
Sbjct: 189 RKNLSLAALWYKKSALQESSYSQYQMGYCYYIGKGIKQDYQQAIYWFRKAADQGDDDAYN 248
Query: 242 AL 243
++
Sbjct: 249 SI 250
>gb|EAA06387.1| (AAAB01008846) agCP13101 [Anopheles gambiae str. PEST]
Length = 849
Score = 83.6 bits (205), Expect = 2e-15
Identities = 50/157 (31%), Positives = 80/157 (50%)
Query: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCN 101
K D A +F+KA +L N G LG Y GKGV KD KA++++ K + G
Sbjct: 432 KADNETAFKYFKKAADLGNPVGQSGLGIMYLHGKGVRKDTGKALKYFAKAADQGWVDGQL 491
Query: 102 LLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYE 161
LGN+YY+G GV +D K A +Y+S A H LG +H G+G + A++L++
Sbjct: 492 QLGNMYYSGIGVQRDFKLAIKYFSLASQSGHVLAFYNLGQMHAIGLGMIRSCPTAVELFK 551
Query: 162 KACDLKDSPGCINAGYIYSVTKNFKEAIVRYSKACEL 198
+ + +GY + F+E+ ++Y+ E+
Sbjct: 552 NVAERGKWADRLMSGYQDYRSYRFEESFMQYALLSEM 588
Score = 77.4 bits (189), Expect = 1e-13
Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 5/164 (3%)
Query: 71 YEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQ-GVSKDAKKASQYYSKACD 129
Y+ G+G+ D ++A+Q++++ + LG +Y G + D + A +Y+ KA D
Sbjct: 388 YQGGRGIPLDHQRALQYFSQAANAGNAVAMAFLGKIYLEGSDNIKADNETAFKYFKKAAD 447
Query: 130 LNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY----SVTKNF 185
L + G LG ++ +G G KD KAL + KA D G + G +Y V ++F
Sbjct: 448 LGNPVGQSGLGIMYLHGKGVRKDTGKALKYFAKAADQGWVDGQLQLGNMYYSGIGVQRDF 507
Query: 186 KEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFK 229
K AI +S A + YNLG M G + AVE FK
Sbjct: 508 KLAIKYFSLASQSGHVLAFYNLGQMHAIGLGMIRSCPTAVELFK 551
Score = 75.9 bits (185), Expect = 4e-13
Identities = 40/139 (28%), Positives = 72/139 (51%), Gaps = 1/139 (0%)
Query: 44 DFAQAKTHFEKACELKNGFGCVFLGAFYEEGK-GVGKDLKKAIQFYTKGCELNDGYGCNL 102
D +A +F +A N FLG Y EG + D + A +++ K +L + G +
Sbjct: 397 DHQRALQYFSQAANAGNAVAMAFLGKIYLEGSDNIKADNETAFKYFKKAADLGNPVGQSG 456
Query: 103 LGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEK 162
LG +Y +G+GV KD KA +Y++KA D +G + LG++++ G+G +D + A+ +
Sbjct: 457 LGIMYLHGKGVRKDTGKALKYFAKAADQGWVDGQLQLGNMYYSGIGVQRDFKLAIKYFSL 516
Query: 163 ACDLKDSPGCINAGYIYSV 181
A N G ++++
Sbjct: 517 ASQSGHVLAFYNLGQMHAI 535
Score = 46.6 bits (109), Expect = 3e-04
Identities = 27/92 (29%), Positives = 46/92 (49%), Gaps = 1/92 (1%)
Query: 75 KGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDL-NHA 133
K G++L +A+Q++ + LG+ +Y G G D + A+ +Y A + N+A
Sbjct: 610 KDRGEELVRALQYWGRAAAQGYSAAQVKLGDYHYYGMGTLIDYEMAASHYRMASEQQNNA 669
Query: 134 EGCMVLGSLHHYGVGTPKDLRKALDLYEKACD 165
+ LG +H G+G KD+ A Y+ A D
Sbjct: 670 QAMFNLGYMHEQGLGMKKDIHLAKRCYDLAAD 701
>ref|NP_415177.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
pir||B64799 hypothetical protein b0644 - Escherichia coli
gb|AAB40845.1| (U82598) hypothetical protein [Escherichia coli]
gb|AAC73745.1| (AE000169) orf, hypothetical protein [Escherichia coli K12]
dbj|BAA35291.1| (D90704) Sel-1 protein [Escherichia coli]
Length = 327
Score = 83.2 bits (204), Expect = 2e-15
Identities = 52/213 (24%), Positives = 99/213 (46%), Gaps = 4/213 (1%)
Query: 37 IESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELND 96
++ + ++ +A ++ A E + LG Y G GV KD A +Y +
Sbjct: 110 LDRGEAPNYKEAVVWYQIAAESGMSYAQNNLGWMYRNGNGVAKDYALAFFWYKQAALQGH 169
Query: 97 GYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKA 156
N L +LY +G+GV+++ A+ +Y K+ + + ++ G G +D ++A
Sbjct: 170 SDAQNNLADLYEDGKGVAQNKTLAAFWYLKSAQQGNRHAQFQIAWDYNAGEGVDQDYKQA 229
Query: 157 LDLYEKACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQY 212
+ Y KA +N GY+Y V K+++ A ++KA E D YNL +M +
Sbjct: 230 MYWYLKAAAQGSVGAYVNIGYMYKHGQGVEKDYQAAFEWFTKAAECNDATAWYNLAIMYH 289
Query: 213 NAQGTAKDEKQAVENFKKGCKSSVKEACDALKE 245
+G D +QA++ ++K S ++ ++E
Sbjct: 290 YGEGRPVDLRQALDLYRKVQSSGTRDVSQEIRE 322
>sp|P77234|YBEQ_ECOLI Hypothetical protein ybeQ
Length = 325
Score = 83.2 bits (204), Expect = 2e-15
Identities = 52/213 (24%), Positives = 99/213 (46%), Gaps = 4/213 (1%)
Query: 37 IESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELND 96
++ + ++ +A ++ A E + LG Y G GV KD A +Y +
Sbjct: 108 LDRGEAPNYKEAVVWYQIAAESGMSYAQNNLGWMYRNGNGVAKDYALAFFWYKQAALQGH 167
Query: 97 GYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKA 156
N L +LY +G+GV+++ A+ +Y K+ + + ++ G G +D ++A
Sbjct: 168 SDAQNNLADLYEDGKGVAQNKTLAAFWYLKSAQQGNRHAQFQIAWDYNAGEGVDQDYKQA 227
Query: 157 LDLYEKACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQY 212
+ Y KA +N GY+Y V K+++ A ++KA E D YNL +M +
Sbjct: 228 MYWYLKAAAQGSVGAYVNIGYMYKHGQGVEKDYQAAFEWFTKAAECNDATAWYNLAIMYH 287
Query: 213 NAQGTAKDEKQAVENFKKGCKSSVKEACDALKE 245
+G D +QA++ ++K S ++ ++E
Sbjct: 288 YGEGRPVDLRQALDLYRKVQSSGTRDVSQEIRE 320
>gb|AAL83953.1|AF354056_1 (AF354056) temperature-induced protein [Helicobacter pylori]
Length = 112
Score = 81.3 bits (199), Expect = 9e-15
Identities = 46/108 (42%), Positives = 60/108 (54%), Gaps = 5/108 (4%)
Query: 1 MLGNVKKTLFGVLCLGTLCLRGLMAEPDAKELVNLGIESAKKQDFAQAKTHFEKACELKN 60
ML VKK F VLCLG LCL GLMAE + KEL+ GI +DF +AK +FEKAC L +
Sbjct: 1 MLRGVKKATFRVLCLGALCLGGLMAESNPKELIFSGITIYTDKDFTRAKEYFEKACRLND 60
Query: 61 GFGCVFLGAFYEEG---KGVGKDLKKAIQF--YTKGCELNDGYGCNLL 103
GC L Y + + + ++KA++ K CEL C +L
Sbjct: 61 ADGCTILREIYSKAIMRENARESIEKALEHTATAKACELELREACGIL 108
>ref|NP_286370.1| (NC_002655) ybeQ gene product [Escherichia coli O157:H7 EDL933]
ref|NP_308709.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
gb|AAG54978.1|AE005243_7 (AE005243) ybeQ gene product [Escherichia coli O157:H7 EDL933]
dbj|BAB34105.1| (AP002552) hypothetical protein [Escherichia coli O157:H7]
Length = 195
Score = 77.8 bits (190), Expect = 1e-13
Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 4/183 (2%)
Query: 67 LGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSK 126
LG Y G G +D A +Y + N L +LY +G+GV+++ A+ +Y K
Sbjct: 8 LGWMYRNGNGAAQDYTLAFFWYKQAALQGHSDAQNNLADLYEDGKGVAQNETLAAFWYLK 67
Query: 127 ACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY----SVT 182
+ + + ++ G G +D ++A+ Y KA +N GY+Y V
Sbjct: 68 SAQQGNRHAQFQIAWDYNAGEGVDQDYKQAMYWYLKAAAQGSVGAYVNIGYMYKHGQGVE 127
Query: 183 KNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEACDA 242
K+++ A ++KA E D YNL +M + +G D +QA++ ++K S ++
Sbjct: 128 KDYQAAFEWFTKAAECNDATAWYNLAIMYHYGEGRPVDLRQALDLYRKVQSSGTRDVSQE 187
Query: 243 LKE 245
++E
Sbjct: 188 IRE 190
Score = 50.4 bits (119), Expect = 2e-05
Identities = 28/84 (33%), Positives = 43/84 (50%)
Query: 43 QDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNL 102
QD+ QA + KA + V +G Y+ G+GV KD + A +++TK E ND
Sbjct: 92 QDYKQAMYWYLKAAAQGSVGAYVNIGYMYKHGQGVEKDYQAAFEWFTKAAECNDATAWYN 151
Query: 103 LGNLYYNGQGVSKDAKKASQYYSK 126
L +Y+ G+G D ++A Y K
Sbjct: 152 LAIMYHYGEGRPVDLRQALDLYRK 175
>gb|AAF45339.1| (AE003066) CG13865 gene product [Drosophila melanogaster]
gb|AAM52744.1| (AY122232) RE58665p [Drosophila melanogaster]
Length = 266
Score = 75.9 bits (185), Expect = 4e-13
Identities = 67/221 (30%), Positives = 99/221 (44%), Gaps = 27/221 (12%)
Query: 26 EPDAKELVNLGIESAKKQDFAQAKTHFEKACELKNGFG--CVFLG--AFYEEGKGVGK-D 80
+P+A L+ +E KK DF +A ++ C+ G+ C G +F +GK K +
Sbjct: 31 KPEACHLLGDYLEGIKK-DFEKASKVYKSTCD-DYGYAKSCYKYGNYSFLGKGKSGSKGN 88
Query: 81 LKKAIQFYTKGCELNDGYGCNLLGNLYYNG---QGVSKDAKKASQYYSKACDLNHAEGCM 137
+ A ++Y KGC LND C G L + + + + K ++ +K+CDLN+A C
Sbjct: 89 PQVAYEYYEKGCNLNDSDACLHSGLLLVSKSMPREIDWNVPKGLEFLTKSCDLNNATACF 148
Query: 138 VLGSLHHYGVGTPKDLRKALDLYEKACD--------LKDSPGCINAGYIYSVTKNFKEAI 189
L +H GV D LKDS Y V K+ K+A
Sbjct: 149 YLSGMHISGVQKKADQSAVTASSGSGTSSPPAGQPPLKDSD--------YIVLKDMKKAF 200
Query: 190 VRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKK 230
KACEL++ C NL M G K+EK+A E +KK
Sbjct: 201 QFAHKACELRNMYACANLSQMYARGDGIEKNEKEA-EKYKK 240
Score = 60.8 bits (146), Expect = 1e-08
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 14/146 (9%)
Query: 100 CNLLGNLYYNGQGVSKDAKKASQYYSKACD-LNHAEGCMVLGSLHHYGVG---TPKDLRK 155
C+LLG+ +G+ KD +KAS+ Y CD +A+ C G+ G G + + +
Sbjct: 35 CHLLGDYL---EGIKKDFEKASKVYKSTCDDYGYAKSCYKYGNYSFLGKGKSGSKGNPQV 91
Query: 156 ALDLYEKACDLKDSPGCINAGYIY-------SVTKNFKEAIVRYSKACELKDGRGCYNLG 208
A + YEK C+L DS C+++G + + N + + +K+C+L + C+ L
Sbjct: 92 AYEYYEKGCNLNDSDACLHSGLLLVSKSMPREIDWNVPKGLEFLTKSCDLNNATACFYLS 151
Query: 209 VMQYNAQGTAKDEKQAVENFKKGCKS 234
M + D+ + G S
Sbjct: 152 GMHISGVQKKADQSAVTASSGSGTSS 177
Score = 50.4 bits (119), Expect = 2e-05
Identities = 31/109 (28%), Positives = 44/109 (39%), Gaps = 32/109 (29%)
Query: 54 KACELKNGFGCVFLGAFYEEG-------------KGVG-------------------KDL 81
K+C+L N C +L + G G G KD+
Sbjct: 137 KSCDLNNATACFYLSGMHISGVQKKADQSAVTASSGSGTSSPPAGQPPLKDSDYIVLKDM 196
Query: 82 KKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDL 130
KKA QF K CEL + Y C L +Y G G+ K+ K+A +Y A ++
Sbjct: 197 KKAFQFAHKACELRNMYACANLSQMYARGDGIEKNEKEAEKYKKLALEM 245
>ref|NP_651179.1| (NM_142922) BcDNA:LD23587 gene product [Drosophila melanogaster]
gb|AAD55437.1|AF181652_1 (AF181652) BcDNA.LD23587 [Drosophila melanogaster]
gb|AAF56178.1| (AE003744) BcDNA:LD23587 gene product [Drosophila melanogaster]
Length = 819
Score = 73.6 bits (179), Expect = 2e-12
Identities = 50/165 (30%), Positives = 76/165 (45%), Gaps = 5/165 (3%)
Query: 70 FYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQG-VSKDAKKASQYYSKAC 128
+Y+ GK +D +KA++++ + G LG LY G + D A Y+SKA
Sbjct: 343 YYQGGKVTEQDHQKALEYFKMAADAGSAVGIAFLGKLYLEGSDQIRADNDAAFGYFSKAA 402
Query: 129 DLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY----SVTKN 184
++ G LG ++ G+G PKD KAL + +A D G + G +Y V +
Sbjct: 403 EMGDPVGQSGLGLMYLKGLGVPKDSIKALSYFTQAADQGWVDGQLQLGNMYFTGNGVKTD 462
Query: 185 FKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFK 229
+K A ++ A + YNLGVM G + AVE FK
Sbjct: 463 YKLAFKYFNLATQSGHVLAYYNLGVMNAYGMGMLRSCPAAVEFFK 507
Score = 68.2 bits (165), Expect = 8e-11
Identities = 42/148 (28%), Positives = 69/148 (46%)
Query: 51 HFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNG 110
+F KA E+ + G LG Y +G GV KD KA+ ++T+ + G LGN+Y+ G
Sbjct: 397 YFSKAAEMGDPVGQSGLGLMYLKGLGVPKDSIKALSYFTQAADQGWVDGQLQLGNMYFTG 456
Query: 111 QGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSP 170
GV D K A +Y++ A H LG ++ YG+G + A++ ++ +
Sbjct: 457 NGVKTDYKLAFKYFNLATQSGHVLAYYNLGVMNAYGMGMLRSCPAAVEFFKTVSERGRWS 516
Query: 171 GCINAGYIYSVTKNFKEAIVRYSKACEL 198
+ Y EA ++YS E+
Sbjct: 517 SRLMMAYSDYKNNRIDEAYMQYSLMAEM 544
Score = 43.9 bits (102), Expect = 0.002
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 79 KDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNH-AEGCM 137
+DL +A ++ + LG+ YY G G S D + A+ Y KA + + A+
Sbjct: 570 EDLIRAFYYWKRAAGQGYSAAQVKLGDYYYYGWGTSTDFETAAALYRKASEQQYNAQAMF 629
Query: 138 VLGSLHHYGVGTPKDLRKALDLYEKACD 165
LG +H G+G KD A LY+ A +
Sbjct: 630 NLGYMHEQGLGMKKDWHLAKRLYDLAAE 657
>gb|AAF01236.1|AF185288_1 (AF185288) immunoreactive protein [Coxiella burnetii]
Length = 469
Score = 72.8 bits (177), Expect = 3e-12
Identities = 49/191 (25%), Positives = 90/191 (46%), Gaps = 9/191 (4%)
Query: 47 QAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNL 106
+A H++K E+ L +Y V KKA+ Y + D LG +
Sbjct: 187 RAANHYDKIKEI--------LADYYLLDTPVPGSEKKAVAIYQELANKQDPAAELKLGFM 238
Query: 107 YYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDL 166
+G KD KA ++Y K+ + + +LG++++ G G +D+ KA+D +K+
Sbjct: 239 NEHGLLFPKDYHKAEEWYQKSAEQGNPIAQYLLGNMYYLGRGVDRDVNKAIDWLKKSAAQ 298
Query: 167 KDSPGCINAGYIYSVTK-NFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAV 225
P + G+IY ++K N+ EA Y+ A + + + YNLG+M +G D ++A
Sbjct: 299 NYVPAKVGLGFIYEMSKHNYPEAKKWYTLASKFHNPQALYNLGLMYEYGKGVKSDPQKAF 358
Query: 226 ENFKKGCKSSV 236
+K ++ +
Sbjct: 359 RLYKDAAQNGL 369
Score = 64.3 bits (155), Expect = 1e-09
Identities = 53/205 (25%), Positives = 89/205 (42%), Gaps = 7/205 (3%)
Query: 43 QDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNL 102
+D+ +A+ ++K+ E N LG Y G+GV +D+ KAI + K N
Sbjct: 247 KDYHKAEEWYQKSAEQGNPIAQYLLGNMYYLGRGVDRDVNKAIDWLKKSAAQNYVPAKVG 306
Query: 103 LGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEK 162
LG +Y + +AKK +Y+ A ++ + LG ++ YG G D +KA LY+
Sbjct: 307 LGFIYEMSKHNYPEAKK---WYTLASKFHNPQALYNLGLMYEYGKGVKSDPQKAFRLYKD 363
Query: 163 ACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTA 218
A + +Y + + A+ YS+A + + Y LG+M +
Sbjct: 364 AAQNGLDLAAVQVAGMYLKGTGIGFDPNTALKMYSQAAQKNNSFATYQLGLMSESGVAQK 423
Query: 219 KDEKQAVENFKKGCKSSVKEACDAL 243
D +A ++K K EA AL
Sbjct: 424 IDLNKARLYYEKAAKEGSVEAQLAL 448
Score = 62.0 bits (149), Expect = 6e-09
Identities = 42/132 (31%), Positives = 58/132 (43%), Gaps = 1/132 (0%)
Query: 33 VNLG-IESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKG 91
V LG I K ++ +AK + A + N LG YE GKGV D +KA + Y
Sbjct: 305 VGLGFIYEMSKHNYPEAKKWYTLASKFHNPQALYNLGLMYEYGKGVKSDPQKAFRLYKDA 364
Query: 92 CELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPK 151
+ + +Y G G+ D A + YS+A N++ LG + GV
Sbjct: 365 AQNGLDLAAVQVAGMYLKGTGIGFDPNTALKMYSQAAQKNNSFATYQLGLMSESGVAQKI 424
Query: 152 DLRKALDLYEKA 163
DL KA YEKA
Sbjct: 425 DLNKARLYYEKA 436
Score = 43.1 bits (100), Expect = 0.003
Identities = 31/118 (26%), Positives = 51/118 (42%), Gaps = 4/118 (3%)
Query: 32 LVNLGI--ESAK--KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQF 87
L NLG+ E K K D +A ++ A + V + Y +G G+G D A++
Sbjct: 337 LYNLGLMYEYGKGVKSDPQKAFRLYKDAAQNGLDLAAVQVAGMYLKGTGIGFDPNTALKM 396
Query: 88 YTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHY 145
Y++ + N+ + LG + +G D KA YY KA E + L + +
Sbjct: 397 YSQAAQKNNSFATYQLGLMSESGVAQKIDLNKARLYYEKAAKEGSVEAQLALARFYEF 454
>gb|AAD41587.1|AF057704_3 (AF057704) enhanced entry protein EnhC [Legionella pneumophila]
Length = 1201
Score = 72.4 bits (176), Expect = 4e-12
Identities = 50/179 (27%), Positives = 77/179 (42%), Gaps = 6/179 (3%)
Query: 44 DFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLL 103
++AQA +E A + G L YE GKGV + KA+ + + E + L
Sbjct: 915 NYAQALKAYENAAAKGDMLGAYNLALMYEYGKGVPVNYSKALSLFKEASEKGAPEAMSQL 974
Query: 104 GNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKA 163
+Y+ G G ++ ++A +Y KA L + LG L GVG D AL Y+ A
Sbjct: 975 AGMYFYGLGQPRNEQQALVWYKKAASLGNGNALYALGLLSETGVGVKLDFPDALRYYQDA 1034
Query: 164 CDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTA 218
D + + +Y V K+ K + Y K + ++ Y LG Y +GTA
Sbjct: 1035 SDKGNEKAMLALARMYHYGLGVEKDHKRSASIYQKLAQKQNAYAQYQLGT--YYIEGTA 1091
Score = 63.9 bits (154), Expect = 2e-09
Identities = 60/246 (24%), Positives = 101/246 (40%), Gaps = 38/246 (15%)
Query: 38 ESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDG 97
+S+ + QAK ++ + + + + L ++G G DL A +YT E +
Sbjct: 805 QSSVPEQMNQAKEIYKGLADKGDQYAQLKLAYMLQKGLGAAPDLAGAQHWYTASAEQGNP 864
Query: 98 YGCNLLGNLYYNGQGVSKDAKKASQYYSKAC-----------------DLNHAE------ 134
LLG Y G+ D A +Y KA D N+A+
Sbjct: 865 EAQYLLGQFYQLGETGEPDYNLAKHWYQKAAKHLSKADVALGFIYETVDDNYAQALKAYE 924
Query: 135 ---------GCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCIN--AG-YIYSV- 181
G L ++ YG G P + KAL L+++A + K +P ++ AG Y Y +
Sbjct: 925 NAAAKGDMLGAYNLALMYEYGKGVPVNYSKALSLFKEASE-KGAPEAMSQLAGMYFYGLG 983
Query: 182 -TKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEAC 240
+N ++A+V Y KA L +G Y LG++ G D A+ ++ ++A
Sbjct: 984 QPRNEQQALVWYKKAASLGNGNALYALGLLSETGVGVKLDFPDALRYYQDASDKGNEKAM 1043
Query: 241 DALKEL 246
AL +
Sbjct: 1044 LALARM 1049
Score = 62.4 bits (150), Expect = 4e-09
Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 2/188 (1%)
Query: 57 ELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKD 116
+L N + L +Y V + + +A + Y + D Y L + G G + D
Sbjct: 788 KLGNSHAGIVLADYYLSQSSVPEQMNQAKEIYKGLADKGDQYAQLKLAYMLQKGLGAAPD 847
Query: 117 AKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAG 176
A +Y+ + + + E +LG + G D A Y+KA S + G
Sbjct: 848 LAGAQHWYTASAEQGNPEAQYLLGQFYQLGETGEPDYNLAKHWYQKAAK-HLSKADVALG 906
Query: 177 YIY-SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSS 235
+IY +V N+ +A+ Y A D G YNL +M +G + +A+ FK+ +
Sbjct: 907 FIYETVDDNYAQALKAYENAAAKGDMLGAYNLALMYEYGKGVPVNYSKALSLFKEASEKG 966
Query: 236 VKEACDAL 243
EA L
Sbjct: 967 APEAMSQL 974
Score = 59.3 bits (142), Expect = 4e-08
Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 8/191 (4%)
Query: 44 DFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLL 103
D+ AK ++KA + + V LG YE V + +A++ Y D G L
Sbjct: 883 DYNLAKHWYQKAAKHLSKAD-VALGFIYET---VDDNYAQALKAYENAAAKGDMLGAYNL 938
Query: 104 GNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKA 163
+Y G+GV + KA + +A + E L ++ YG+G P++ ++AL Y+KA
Sbjct: 939 ALMYEYGKGVPVNYSKALSLFKEASEKGAPEAMSQLAGMYFYGLGQPRNEQQALVWYKKA 998
Query: 164 CDLKDSPGCINAGYI----YSVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAK 219
L + G + V +F +A+ Y A + + + L M + G K
Sbjct: 999 ASLGNGNALYALGLLSETGVGVKLDFPDALRYYQDASDKGNEKAMLALARMYHYGLGVEK 1058
Query: 220 DEKQAVENFKK 230
D K++ ++K
Sbjct: 1059 DHKRSASIYQK 1069
Score = 53.5 bits (127), Expect = 2e-06
Identities = 33/119 (27%), Positives = 53/119 (43%)
Query: 47 QAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNL 106
QA ++KA L NG LG E G GV D A+++Y + + L +
Sbjct: 990 QALVWYKKAASLGNGNALYALGLLSETGVGVKLDFPDALRYYQDASDKGNEKAMLALARM 1049
Query: 107 YYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACD 165
Y+ G GV KD K+++ Y K +A LG+ + G + K +L ++A +
Sbjct: 1050 YHYGLGVEKDHKRSASIYQKLAQKQNAYAQYQLGTYYIEGTAGERLPEKGRELLQQASE 1108
Score = 43.5 bits (101), Expect = 0.002
Identities = 46/186 (24%), Positives = 77/186 (40%), Gaps = 6/186 (3%)
Query: 66 FLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYS 125
+LG Y G G K+ + A++++TK E GY +L Y+ K+ ++A++++
Sbjct: 53 YLGRLYLYGYGQLKNNRVAMRYFTKSAE--KGYLPAVLLMAKYSLLH-EKNPEEAARWFK 109
Query: 126 KACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYSVTK-- 183
+A + M + + + YGVG K+ A Y A + + +K
Sbjct: 110 QAAAVGDVSAQMYMAAAYLYGVGVKKNTDIARRYYIDAAKNGNPIAQYTLAEYFLESKHA 169
Query: 184 -NFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEACDA 242
N K I+ +KA E D + LG Q AKD + VE K A
Sbjct: 170 GNKKLGIIWLNKAAENGDPKALTELGRFYVAGQMVAKDTAKGVELLNKAASEQYTPAMLE 229
Query: 243 LKELKI 248
L +L +
Sbjct: 230 LGKLAL 235
>ref|XP_131544.1| (XM_131544) RIKEN cDNA 2010305A19 [Mus musculus]
gb|AAH12391.1|AAH12391 (BC012391) Similar to hypothetical protein FLJ12439 [Mus musculus]
Length = 231
Score = 70.5 bits (171), Expect = 2e-11
Identities = 60/172 (34%), Positives = 87/172 (49%), Gaps = 17/172 (9%)
Query: 42 KQDFAQAKTHFEKACELKNGFG--CVFLGAFYEEGKG-VGKDLKKAIQFYTKGCEL---N 95
+++F +A + CE K G G C LGA+Y GKG + +DLK A + CE
Sbjct: 48 QKNFDEAAKVLKFNCE-KYGHGDSCYKLGAYYVTGKGGLTQDLKAASSCFLMACEKPGKK 106
Query: 96 DGYGCNLLGNLYYNGQGVSKDAK----KASQYYSKACDLNHAEGCMVLGSLHHYGV-GTP 150
C+ +G L ++GQ V++D + KA YYS+ACD +A C L ++ G G P
Sbjct: 107 SVESCHNVGLLAHDGQ-VNEDGQPDLGKARDYYSRACDGGYAASCFNLSAMFLQGAPGFP 165
Query: 151 KDLRKALDLYEKACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKACEL 198
KD+ A KACDL C NA +Y V K+ +A V ++A +L
Sbjct: 166 KDMGLACKYSMKACDLGHVWACANASRMYKLGDGVDKDEAKAEVLKNRARQL 217
Score = 60.1 bits (144), Expect = 2e-08
Identities = 56/180 (31%), Positives = 76/180 (42%), Gaps = 18/180 (10%)
Query: 59 KNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCE-LNDGYGCNLLGNLYYNGQG-VSKD 116
K+ GC L + E G+ K+ +A + CE G C LG Y G+G +++D
Sbjct: 32 KDPEGCYRLVDYLE---GIQKNFDEAAKVLKFNCEKYGHGDSCYKLGAYYVTGKGGLTQD 88
Query: 117 AKKASQYYSKACDL---NHAEGCMVLGSLHHYGV----GTPKDLRKALDLYEKACDLKDS 169
K AS + AC+ E C +G L H G G P DL KA D Y +ACD +
Sbjct: 89 LKAASSCFLMACEKPGKKSVESCHNVGLLAHDGQVNEDGQP-DLGKARDYYSRACDGGYA 147
Query: 170 PGCINAGYIY-----SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQA 224
C N ++ K+ A KAC+L C N M G KDE +A
Sbjct: 148 ASCFNLSAMFLQGAPGFPKDMGLACKYSMKACDLGHVWACANASRMYKLGDGVDKDEAKA 207
Score = 47.4 bits (111), Expect = 1e-04
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 44 DFAQAKTHFEKACELKNGFGCVFLGAFYEEGK-GVGKDLKKAIQFYTKGCELNDGYGCNL 102
D +A+ ++ +AC+ C L A + +G G KD+ A ++ K C+L + C
Sbjct: 130 DLGKARDYYSRACDGGYAASCFNLSAMFLQGAPGFPKDMGLACKYSMKACDLGHVWACAN 189
Query: 103 LGNLYYNGQGVSKDAKKASQYYSKACDLN 131
+Y G GV KD KA ++A L+
Sbjct: 190 ASRMYKLGDGVDKDEAKAEVLKNRARQLH 218
>dbj|BAB25716.1| (AK008518) data source:SPTR, source key:Q9H9Z9,
evidence:ISS~homolog to CDNA FLJ12439 FIS, CLONE
NT2RM1000127~putative [Mus musculus]
Length = 204
Score = 70.5 bits (171), Expect = 2e-11
Identities = 60/172 (34%), Positives = 87/172 (49%), Gaps = 17/172 (9%)
Query: 42 KQDFAQAKTHFEKACELKNGFG--CVFLGAFYEEGKG-VGKDLKKAIQFYTKGCEL---N 95
+++F +A + CE K G G C LGA+Y GKG + +DLK A + CE
Sbjct: 21 QKNFDEAAKVLKFNCE-KYGHGDSCYKLGAYYVTGKGGLTQDLKAASSCFLMACEKPGKK 79
Query: 96 DGYGCNLLGNLYYNGQGVSKDAK----KASQYYSKACDLNHAEGCMVLGSLHHYGV-GTP 150
C+ +G L ++GQ V++D + KA YYS+ACD +A C L ++ G G P
Sbjct: 80 SVESCHNVGLLAHDGQ-VNEDGQPDLGKARDYYSRACDGGYAASCFNLSAMFLQGAPGFP 138
Query: 151 KDLRKALDLYEKACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKACEL 198
KD+ A KACDL C NA +Y V K+ +A V ++A +L
Sbjct: 139 KDMGLACKYSMKACDLGHVWACANASRMYKLGDGVDKDEAKAEVLKNRARQL 190
Score = 59.7 bits (143), Expect = 3e-08
Identities = 55/176 (31%), Positives = 74/176 (41%), Gaps = 18/176 (10%)
Query: 63 GCVFLGAFYEEGKGVGKDLKKAIQFYTKGCE-LNDGYGCNLLGNLYYNGQG-VSKDAKKA 120
GC L + E G+ K+ +A + CE G C LG Y G+G +++D K A
Sbjct: 9 GCYRLVDYLE---GIQKNFDEAAKVLKFNCEKYGHGDSCYKLGAYYVTGKGGLTQDLKAA 65
Query: 121 SQYYSKACDL---NHAEGCMVLGSLHHYGV----GTPKDLRKALDLYEKACDLKDSPGCI 173
S + AC+ E C +G L H G G P DL KA D Y +ACD + C
Sbjct: 66 SSCFLMACEKPGKKSVESCHNVGLLAHDGQVNEDGQP-DLGKARDYYSRACDGGYAASCF 124
Query: 174 NAGYIY-----SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQA 224
N ++ K+ A KAC+L C N M G KDE +A
Sbjct: 125 NLSAMFLQGAPGFPKDMGLACKYSMKACDLGHVWACANASRMYKLGDGVDKDEAKA 180
Score = 47.4 bits (111), Expect = 1e-04
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 44 DFAQAKTHFEKACELKNGFGCVFLGAFYEEGK-GVGKDLKKAIQFYTKGCELNDGYGCNL 102
D +A+ ++ +AC+ C L A + +G G KD+ A ++ K C+L + C
Sbjct: 103 DLGKARDYYSRACDGGYAASCFNLSAMFLQGAPGFPKDMGLACKYSMKACDLGHVWACAN 162
Query: 103 LGNLYYNGQGVSKDAKKASQYYSKACDLN 131
+Y G GV KD KA ++A L+
Sbjct: 163 ASRMYKLGDGVDKDEAKAEVLKNRARQLH 191
>ref|NP_246550.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK03695.1| (AE006198) unknown [Pasteurella multocida]
Length = 172
Score = 69.7 bits (169), Expect = 3e-11
Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 2/166 (1%)
Query: 7 KTLFGVLCLGTLCLRGLMAEPDAKELVNLGIESAKKQDFAQAKTHFEKACELKNGFGCVF 66
KTL ++ L + + A+ + + G+E+ K+ D A A + E
Sbjct: 6 KTLLSIMLL--VSTMNVFAQREEDPVFEQGVEAYKRGDHATAFKLWLSRAEQGEMSAQFN 63
Query: 67 LGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSK 126
+G Y++G GV +D ++A+++Y K E N LG +Y G G+++D K+A ++YS+
Sbjct: 64 VGRMYDDGDGVEQDKQQALKWYQKSAEQNHPDAQYHLGLMYSEGDGIAQDFKQAYKWYSQ 123
Query: 127 ACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGC 172
+ A LG+L+ G G +D +A +++AC GC
Sbjct: 124 SAVQGDARALYNLGTLYANGEGIERDWDRAKMYFKQACKAGLPEGC 169
Score = 63.5 bits (153), Expect = 2e-09
Identities = 33/107 (30%), Positives = 57/107 (52%), Gaps = 4/107 (3%)
Query: 139 LGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYS----VTKNFKEAIVRYSK 194
+G ++ G G +D ++AL Y+K+ + + G +YS + ++FK+A YS+
Sbjct: 64 VGRMYDDGDGVEQDKQQALKWYQKSAEQNHPDAQYHLGLMYSEGDGIAQDFKQAYKWYSQ 123
Query: 195 ACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEACD 241
+ D R YNLG + N +G +D +A FK+ CK+ + E CD
Sbjct: 124 SAVQGDARALYNLGTLYANGEGIERDWDRAKMYFKQACKAGLPEGCD 170
>ref|NP_455743.1| (NC_003198) putative secreted protein [Salmonella enterica subsp.
enterica serovar Typhi]
emb|CAD08375.1| (AL627269) putative secreted protein [Salmonella enterica subsp.
enterica serovar Typhi]
Length = 509
Score = 69.3 bits (168), Expect = 4e-11
Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 15/184 (8%)
Query: 67 LGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSK 126
LG++Y EG+ V D K AI++ K + + +LG Y G+ +KA ++Y K
Sbjct: 57 LGSWYAEGRYVKPDYKLAIKWLEKAGKQGSDFSYFILGYHYNYGENFPLSRQKALEWYRK 116
Query: 127 ACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINA----------- 175
A +L + +LG + YG G P++ + AL+ Y KA + G +
Sbjct: 117 AAELGDSSTQEILGDAYMYGDGFPQNTQLALEWYRKAASPTNDAGVVRGQGSASSAQFKL 176
Query: 176 GYIYS----VTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKG 231
G +Y+ V +++++ + KA E LGV + +G +D +QAV +G
Sbjct: 177 GVMYAHGQGVPQDYQQTAILMRKAAENMYYPAQLYLGVAYFYGEGVPQDYRQAVYWLNEG 236
Query: 232 CKSS 235
S
Sbjct: 237 IPGS 240
Score = 67.8 bits (164), Expect = 1e-10
Identities = 57/251 (22%), Positives = 97/251 (37%), Gaps = 49/251 (19%)
Query: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCN 101
K D+ A EKA + + F LG Y G+ +KA+++Y K EL D
Sbjct: 68 KPDYKLAIKWLEKAGKQGSDFSYFILGYHYNYGENFPLSRQKALEWYRKAAELGDSSTQE 127
Query: 102 LLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCM-----------VLGSLHHYGVGTP 150
+LG+ Y G G ++ + A ++Y KA + G + LG ++ +G G P
Sbjct: 128 ILGDAYMYGDGFPQNTQLALEWYRKAASPTNDAGVVRGQGSASSAQFKLGVMYAHGQGVP 187
Query: 151 KDLRKALDLYEKACDLKDSPGCINAGYIY----SVTKNFKEAI----------------- 189
+D ++ L KA + P + G Y V +++++A+
Sbjct: 188 QDYQQTAILMRKAAENMYYPAQLYLGVAYFYGEGVPQDYRQAVYWLNEGIPGSYTPGHIP 247
Query: 190 -----------------VRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGC 232
Y K + + +N GV YN KD A+E +++
Sbjct: 248 LNALYDKAHPADQVHSQTWYRKTAQRVMAKVQFNFGVWYYNGYHLLKDHNLALEWYRRAA 307
Query: 233 KSSVKEACDAL 243
+ EA DA+
Sbjct: 308 AQGLAEAQDAI 318
Score = 57.0 bits (136), Expect = 2e-07
Identities = 38/134 (28%), Positives = 66/134 (48%), Gaps = 5/134 (3%)
Query: 67 LGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSK 126
+G + +G+ V +D ++A+ +Y K LG + G+GV++ ++A +Y K
Sbjct: 318 IGVMFMQGEAVSQDYQQALAWYRKAARQGLPAAQTHLGIMSAFGRGVAQSDRQAIAWYRK 377
Query: 127 ACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYS-----V 181
A + A+ LG + G G P++ R AL Y KA + +P + G IY+ V
Sbjct: 378 AAKQDFAKAQYQLGVAYSMGRGVPENSRNALKWYLKAAEQGFTPAQLALGEIYAHGRQGV 437
Query: 182 TKNFKEAIVRYSKA 195
K+ K+A + Y A
Sbjct: 438 PKDNKQAYIWYYMA 451
Score = 56.2 bits (134), Expect = 3e-07
Identities = 49/197 (24%), Positives = 81/197 (40%), Gaps = 5/197 (2%)
Query: 33 VNLGIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGC 92
+N + A D ++T + K + G +Y G + KD A+++Y +
Sbjct: 248 LNALYDKAHPADQVHSQTWYRKTAQRVMAKVQFNFGVWYYNGYHLLKDHNLALEWYRRAA 307
Query: 93 ELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKD 152
+ +G ++ G+ VS+D ++A +Y KA LG + +G G +
Sbjct: 308 AQGLAEAQDAIGVMFMQGEAVSQDYQQALAWYRKAARQGLPAAQTHLGIMSAFGRGVAQS 367
Query: 153 LRKALDLYEKACDLKDSPGCINAGYIYS----VTKNFKEAIVRYSKACELKDGRGCYNLG 208
R+A+ Y KA + G YS V +N + A+ Y KA E LG
Sbjct: 368 DRQAIAWYRKAAKQDFAKAQYQLGVAYSMGRGVPENSRNALKWYLKAAEQGFTPAQLALG 427
Query: 209 -VMQYNAQGTAKDEKQA 224
+ + QG KD KQA
Sbjct: 428 EIYAHGRQGVPKDNKQA 444
Score = 53.5 bits (127), Expect = 2e-06
Identities = 36/125 (28%), Positives = 59/125 (46%), Gaps = 1/125 (0%)
Query: 40 AKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYG 99
A QD+ QA + KA LG G+GV + ++AI +Y K + +
Sbjct: 327 AVSQDYQQALAWYRKAARQGLPAAQTHLGIMSAFGRGVAQSDRQAIAWYRKAAKQDFAKA 386
Query: 100 CNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYG-VGTPKDLRKALD 158
LG Y G+GV ++++ A ++Y KA + + LG ++ +G G PKD ++A
Sbjct: 387 QYQLGVAYSMGRGVPENSRNALKWYLKAAEQGFTPAQLALGEIYAHGRQGVPKDNKQAYI 446
Query: 159 LYEKA 163
Y A
Sbjct: 447 WYYMA 451
Score = 52.0 bits (123), Expect = 6e-06
Identities = 57/243 (23%), Positives = 95/243 (38%), Gaps = 40/243 (16%)
Query: 43 QDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYG--- 99
QD+ Q KA E ++LG Y G+GV +D ++A+ + +G + G
Sbjct: 188 QDYQQTAILMRKAAENMYYPAQLYLGVAYFYGEGVPQDYRQAVYWLNEGIPGSYTPGHIP 247
Query: 100 CNLL-------------------------------GNLYYNGQGVSKDAKKASQYYSKAC 128
N L G YYNG + KD A ++Y +A
Sbjct: 248 LNALYDKAHPADQVHSQTWYRKTAQRVMAKVQFNFGVWYYNGYHLLKDHNLALEWYRRAA 307
Query: 129 DLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGC-----INAGYIYSVTK 183
AE +G + G +D ++AL Y KA + P I + + V +
Sbjct: 308 AQGLAEAQDAIGVMFMQGEAVSQDYQQALAWYRKAA-RQGLPAAQTHLGIMSAFGRGVAQ 366
Query: 184 NFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEACDAL 243
+ ++AI Y KA + + Y LGV +G ++ + A++ + K + A AL
Sbjct: 367 SDRQAIAWYRKAAKQDFAKAQYQLGVAYSMGRGVPENSRNALKWYLKAAEQGFTPAQLAL 426
Query: 244 KEL 246
E+
Sbjct: 427 GEI 429
>ref|NP_460716.1| (NC_003197) putative TPR repeat protein [Salmonella typhimurium
LT2]
gb|AAL20675.1| (AE008778) putative TPR repeat protein [Salmonella typhimurium LT2]
Length = 509
Score = 69.3 bits (168), Expect = 4e-11
Identities = 58/251 (23%), Positives = 97/251 (38%), Gaps = 49/251 (19%)
Query: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCN 101
K D+ A EKA + + F LG Y G+ +KA+++Y K EL D
Sbjct: 68 KPDYKLAIKWLEKAGKQGSDFSYFILGYHYNYGENFPLSRQKALEWYRKAAELGDSSTQE 127
Query: 102 LLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCM-----------VLGSLHHYGVGTP 150
+LG+ Y G G ++ + A ++Y KA + G + LG ++ +G G P
Sbjct: 128 ILGDAYMYGDGFPQNTQLALEWYRKAASPTNDAGVVRGQGSASSAQFKLGVMYAHGQGVP 187
Query: 151 KDLRKALDLYEKACDLKDSPGCINAGYIY----SVTKNFKEAI----------------- 189
+D ++ L KA + P + G Y V +++++A+
Sbjct: 188 QDYQQTAILMRKAAENMYYPAQLYLGVAYFYGEGVPQDYRQAVYWLNEGIPGSYTPGHIP 247
Query: 190 -----------------VRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGC 232
Y K + + YN GV YN KD A+E +++
Sbjct: 248 LNALYDKAHPADRVHSQTWYRKTAQRVMAKVQYNFGVWYYNGYHLLKDHNLALEWYRRAA 307
Query: 233 KSSVKEACDAL 243
+ EA DA+
Sbjct: 308 AQGLAEAQDAI 318
Score = 69.3 bits (168), Expect = 4e-11
Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 15/184 (8%)
Query: 67 LGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSK 126
LG++Y EG+ V D K AI++ K + + +LG Y G+ +KA ++Y K
Sbjct: 57 LGSWYAEGRYVKPDYKLAIKWLEKAGKQGSDFSYFILGYHYNYGENFPLSRQKALEWYRK 116
Query: 127 ACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINA----------- 175
A +L + +LG + YG G P++ + AL+ Y KA + G +
Sbjct: 117 AAELGDSSTQEILGDAYMYGDGFPQNTQLALEWYRKAASPTNDAGVVRGQGSASSAQFKL 176
Query: 176 GYIYS----VTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKG 231
G +Y+ V +++++ + KA E LGV + +G +D +QAV +G
Sbjct: 177 GVMYAHGQGVPQDYQQTAILMRKAAENMYYPAQLYLGVAYFYGEGVPQDYRQAVYWLNEG 236
Query: 232 CKSS 235
S
Sbjct: 237 IPGS 240
Score = 58.2 bits (139), Expect = 8e-08
Identities = 50/197 (25%), Positives = 82/197 (41%), Gaps = 5/197 (2%)
Query: 33 VNLGIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGC 92
+N + A D ++T + K + G +Y G + KD A+++Y +
Sbjct: 248 LNALYDKAHPADRVHSQTWYRKTAQRVMAKVQYNFGVWYYNGYHLLKDHNLALEWYRRAA 307
Query: 93 ELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKD 152
+ +G ++ G+GVS+D ++A +Y KA LG + +G G +
Sbjct: 308 AQGLAEAQDAIGVMFMQGEGVSQDYQQALAWYRKAARQGLPAAQTHLGIMSAFGRGVAQS 367
Query: 153 LRKALDLYEKACDLKDSPGCINAGYIYS----VTKNFKEAIVRYSKACELKDGRGCYNLG 208
R+A+ Y KA + G YS V +N + A+ Y KA E LG
Sbjct: 368 DRQAIAWYRKAAKQDFAKAQYQLGVAYSTGRGVPENSRNALKWYLKAAEQGFTPAQSALG 427
Query: 209 -VMQYNAQGTAKDEKQA 224
+ + QG KD KQA
Sbjct: 428 EIYAHGRQGVPKDNKQA 444
Score = 57.4 bits (137), Expect = 1e-07
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 67 LGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSK 126
+G + +G+GV +D ++A+ +Y K LG + G+GV++ ++A +Y K
Sbjct: 318 IGVMFMQGEGVSQDYQQALAWYRKAARQGLPAAQTHLGIMSAFGRGVAQSDRQAIAWYRK 377
Query: 127 ACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYS-----V 181
A + A+ LG + G G P++ R AL Y KA + +P G IY+ V
Sbjct: 378 AAKQDFAKAQYQLGVAYSTGRGVPENSRNALKWYLKAAEQGFTPAQSALGEIYAHGRQGV 437
Query: 182 TKNFKEAIVRYSKA 195
K+ K+A + Y A
Sbjct: 438 PKDNKQAYIWYYMA 451
Score = 56.6 bits (135), Expect = 2e-07
Identities = 58/243 (23%), Positives = 96/243 (38%), Gaps = 40/243 (16%)
Query: 43 QDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYG--- 99
QD+ Q KA E ++LG Y G+GV +D ++A+ + +G + G
Sbjct: 188 QDYQQTAILMRKAAENMYYPAQLYLGVAYFYGEGVPQDYRQAVYWLNEGIPGSYTPGHIP 247
Query: 100 CNLL-------------------------------GNLYYNGQGVSKDAKKASQYYSKAC 128
N L G YYNG + KD A ++Y +A
Sbjct: 248 LNALYDKAHPADRVHSQTWYRKTAQRVMAKVQYNFGVWYYNGYHLLKDHNLALEWYRRAA 307
Query: 129 DLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGC-----INAGYIYSVTK 183
AE +G + G G +D ++AL Y KA + P I + + V +
Sbjct: 308 AQGLAEAQDAIGVMFMQGEGVSQDYQQALAWYRKAA-RQGLPAAQTHLGIMSAFGRGVAQ 366
Query: 184 NFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEACDAL 243
+ ++AI Y KA + + Y LGV +G ++ + A++ + K + A AL
Sbjct: 367 SDRQAIAWYRKAAKQDFAKAQYQLGVAYSTGRGVPENSRNALKWYLKAAEQGFTPAQSAL 426
Query: 244 KEL 246
E+
Sbjct: 427 GEI 429
Score = 52.4 bits (124), Expect = 5e-06
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 43 QDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNL 102
QD+ QA + KA LG G+GV + ++AI +Y K + +
Sbjct: 330 QDYQQALAWYRKAARQGLPAAQTHLGIMSAFGRGVAQSDRQAIAWYRKAAKQDFAKAQYQ 389
Query: 103 LGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYG-VGTPKDLRKALDLYE 161
LG Y G+GV ++++ A ++Y KA + LG ++ +G G PKD ++A Y
Sbjct: 390 LGVAYSTGRGVPENSRNALKWYLKAAEQGFTPAQSALGEIYAHGRQGVPKDNKQAYIWYY 449
Query: 162 KA 163
A
Sbjct: 450 MA 451
>gb|AAD05210.1| (AF063095) SELlL [Mus musculus]
gb|AAH26816.1| (BC026816) Sel1 (suppressor of lin-12) 1 homolog (C. elegans) [Mus
musculus]
Length = 740
Score = 68.9 bits (167), Expect = 5e-11
Identities = 40/142 (28%), Positives = 70/142 (49%)
Query: 51 HFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNG 110
+F+KA ++ N G LG Y G+GV + A++++ K E G LG++YYNG
Sbjct: 383 YFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNG 442
Query: 111 QGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSP 170
GV +D K+A +Y++ A H L +H G G + A++L++ C+
Sbjct: 443 IGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWS 502
Query: 171 GCINAGYIYSVTKNFKEAIVRY 192
+ Y +++ A+V+Y
Sbjct: 503 ERLMTAYNSYKDEDYNAAVVQY 524
Score = 65.5 bits (158), Expect = 5e-10
Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 33/193 (17%)
Query: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKG-VGKDLKKAIQFYTKGCELNDGYGC 100
+Q+ +A +F A N FLG Y EG V + + A+ ++ K ++ + G
Sbjct: 337 EQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQ 396
Query: 101 NLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLY 160
+ LG Y G+GV + A +Y+ KA + +G + LGS+++ G+G +D ++AL +
Sbjct: 397 SGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYF 456
Query: 161 EKACDLKDSPGCINAGYIYSVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKD 220
A G+I + YNL M + G +
Sbjct: 457 NLASQ---------GGHILAF-----------------------YNLAQMHASGTGVMRS 484
Query: 221 EKQAVENFKKGCK 233
AVE FK C+
Sbjct: 485 CHTAVELFKNVCE 497
Score = 57.8 bits (138), Expect = 1e-07
Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 6/150 (4%)
Query: 85 IQFYTKGCELNDGYGCNLLGNLY-YNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLH 143
IQ+Y E D LG L+ + G+GV ++ ++A Y++ A + ++ LG ++
Sbjct: 307 IQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMY 366
Query: 144 HYGVG-TPKDLRKALDLYEKACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKACEL 198
G P+ AL ++KA D+ + G G Y V N+ A+ + KA E
Sbjct: 367 SEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQ 426
Query: 199 KDGRGCYNLGVMQYNAQGTAKDEKQAVENF 228
G LG M YN G +D KQA++ F
Sbjct: 427 GWVDGQLQLGSMYYNGIGVKRDYKQALKYF 456
>ref|XP_127076.1| (XM_127076) similar to Sel-1 homolog precursor (Suppressor of
lin-12-like protein) (Sel-1L) [Mus musculus]
sp|Q9Z2G6|SE1L_MOUSE Sel-1 homolog precursor (Suppressor of lin-12-like protein)
(Sel-1L)
dbj|BAB23750.1| (AK005023) Sel1 (suppressor of lin-12) 1 homolog (C. elegans)~data
source:MGD, source key:MGI:1329016,
evidence:ISS~putative [Mus musculus]
Length = 790
Score = 68.9 bits (167), Expect = 5e-11
Identities = 40/142 (28%), Positives = 70/142 (49%)
Query: 51 HFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNG 110
+F+KA ++ N G LG Y G+GV + A++++ K E G LG++YYNG
Sbjct: 433 YFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNG 492
Query: 111 QGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSP 170
GV +D K+A +Y++ A H L +H G G + A++L++ C+
Sbjct: 493 IGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWS 552
Query: 171 GCINAGYIYSVTKNFKEAIVRY 192
+ Y +++ A+V+Y
Sbjct: 553 ERLMTAYNSYKDEDYNAAVVQY 574
Score = 65.5 bits (158), Expect = 5e-10
Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 33/193 (17%)
Query: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKG-VGKDLKKAIQFYTKGCELNDGYGC 100
+Q+ +A +F A N FLG Y EG V + + A+ ++ K ++ + G
Sbjct: 387 EQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQ 446
Query: 101 NLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLY 160
+ LG Y G+GV + A +Y+ KA + +G + LGS+++ G+G +D ++AL +
Sbjct: 447 SGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYF 506
Query: 161 EKACDLKDSPGCINAGYIYSVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKD 220
A G+I + YNL M + G +
Sbjct: 507 NLASQ---------GGHILAF-----------------------YNLAQMHASGTGVMRS 534
Query: 221 EKQAVENFKKGCK 233
AVE FK C+
Sbjct: 535 CHTAVELFKNVCE 547
Score = 57.8 bits (138), Expect = 1e-07
Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 6/150 (4%)
Query: 85 IQFYTKGCELNDGYGCNLLGNLY-YNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLH 143
IQ+Y E D LG L+ + G+GV ++ ++A Y++ A + ++ LG ++
Sbjct: 357 IQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMY 416
Query: 144 HYGVG-TPKDLRKALDLYEKACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKACEL 198
G P+ AL ++KA D+ + G G Y V N+ A+ + KA E
Sbjct: 417 SEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQ 476
Query: 199 KDGRGCYNLGVMQYNAQGTAKDEKQAVENF 228
G LG M YN G +D KQA++ F
Sbjct: 477 GWVDGQLQLGSMYYNGIGVKRDYKQALKYF 506
>ref|NP_005056.3| (NM_005065) sel-1 suppressor of lin-12-like (C. elegans);
Suppressor of lin 12 (sel-1), C. elegans, homolog of;
sel-1 (suppressor of lin-12, C.elegans)-like [Homo
sapiens]
ref|XP_007325.4| (XM_007325) sel-1 suppressor of lin-12-like (C. elegans) [Homo
sapiens]
sp|Q9UBV2|SE1L_HUMAN Sel-1 homolog precursor (Suppressor of lin-12-like protein)
(Sel-1L)
dbj|BAA87904.1| (AB020335) Pancreas-specific gene [Homo sapiens]
dbj|BAA89204.1| (AB024763) TSA305 [Homo sapiens]
Length = 794
Score = 67.4 bits (163), Expect = 1e-10
Identities = 39/142 (27%), Positives = 69/142 (48%)
Query: 51 HFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNG 110
+F+KA ++ N G LG Y G+GV + A++++ K E G LG++YYNG
Sbjct: 437 YFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNG 496
Query: 111 QGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSP 170
GV +D K+A +Y++ A H L +H G G + A++L++ C+
Sbjct: 497 IGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWS 556
Query: 171 GCINAGYIYSVTKNFKEAIVRY 192
+ Y ++ A+++Y
Sbjct: 557 ERLMTAYNSYKDGDYNAAVIQY 578
Score = 65.9 bits (159), Expect = 4e-10
Identities = 48/190 (25%), Positives = 84/190 (43%), Gaps = 21/190 (11%)
Query: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKG-VGKDLKKAIQFYTKGCELNDGYGC 100
+Q+ +A +F A N FLG Y EG V + + A+ ++ K ++ + G
Sbjct: 391 EQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQ 450
Query: 101 NLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLY 160
+ LG Y G+GV + A +Y+ KA + +G + LGS+++ G+G +D ++AL +
Sbjct: 451 SGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYF 510
Query: 161 EKACDLKDSPGCINAGYIYS----VTKNFKEAIVRYSKACE--------------LKDGR 202
A N +++ V ++ A+ + CE KDG
Sbjct: 511 NLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDGD 570
Query: 203 GCYNLGVMQY 212
YN V+QY
Sbjct: 571 --YNAAVIQY 578
Score = 57.8 bits (138), Expect = 1e-07
Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 6/150 (4%)
Query: 85 IQFYTKGCELNDGYGCNLLGNLY-YNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLH 143
IQ+Y E D LG L+ + G+GV ++ ++A Y++ A + ++ LG ++
Sbjct: 361 IQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMY 420
Query: 144 HYGVG-TPKDLRKALDLYEKACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKACEL 198
G P+ AL ++KA D+ + G G Y V N+ A+ + KA E
Sbjct: 421 SEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQ 480
Query: 199 KDGRGCYNLGVMQYNAQGTAKDEKQAVENF 228
G LG M YN G +D KQA++ F
Sbjct: 481 GWVDGQLQLGSMYYNGIGVKRDYKQALKYF 510
>dbj|BAB12403.1| (AB048195) SEL1L [Mesocricetus auratus]
Length = 794
Score = 67.4 bits (163), Expect = 1e-10
Identities = 39/142 (27%), Positives = 69/142 (48%)
Query: 51 HFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNG 110
+F+KA ++ N G LG Y G+G+ + A++++ K E G LG++YYNG
Sbjct: 437 YFKKAADMGNPVGQSGLGMAYLYGRGIQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNG 496
Query: 111 QGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSP 170
GV +D K+A +Y++ A H L +H G G + A++L++ C+
Sbjct: 497 IGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWS 556
Query: 171 GCINAGYIYSVTKNFKEAIVRY 192
+ Y ++ A+V+Y
Sbjct: 557 ERLMTAYNSYKDGDYNAAVVQY 578
Score = 65.5 bits (158), Expect = 5e-10
Identities = 47/190 (24%), Positives = 84/190 (43%), Gaps = 21/190 (11%)
Query: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKG-VGKDLKKAIQFYTKGCELNDGYGC 100
+Q+ +A +F A N FLG Y EG V + + A+ ++ K ++ + G
Sbjct: 391 EQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQ 450
Query: 101 NLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLY 160
+ LG Y G+G+ + A +Y+ KA + +G + LGS+++ G+G +D ++AL +
Sbjct: 451 SGLGMAYLYGRGIQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYF 510
Query: 161 EKACDLKDSPGCINAGYIYS----VTKNFKEAIVRYSKACE--------------LKDGR 202
A N +++ V ++ A+ + CE KDG
Sbjct: 511 NLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDGD 570
Query: 203 GCYNLGVMQY 212
YN V+QY
Sbjct: 571 --YNAAVVQY 578
Score = 57.4 bits (137), Expect = 1e-07
Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 6/150 (4%)
Query: 85 IQFYTKGCELNDGYGCNLLGNLY-YNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLH 143
IQ+Y E D LG L+ + G+GV ++ ++A Y++ A + ++ LG ++
Sbjct: 361 IQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMY 420
Query: 144 HYGVG-TPKDLRKALDLYEKACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKACEL 198
G P+ AL ++KA D+ + G G Y + N+ A+ + KA E
Sbjct: 421 SEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGIQVNYDLALKYFQKAAEQ 480
Query: 199 KDGRGCYNLGVMQYNAQGTAKDEKQAVENF 228
G LG M YN G +D KQA++ F
Sbjct: 481 GWVDGQLQLGSMYYNGIGVKRDYKQALKYF 510
>gb|AAF29413.1|AF052059_1 (AF052059) SEL1L [Homo sapiens]
gb|AAL40905.1| (AF198647) sel-1 [Homo sapiens]
Length = 794
Score = 67.4 bits (163), Expect = 1e-10
Identities = 39/142 (27%), Positives = 69/142 (48%)
Query: 51 HFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNG 110
+F+KA ++ N G LG Y G+GV + A++++ K E G LG++YYNG
Sbjct: 437 YFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNG 496
Query: 111 QGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSP 170
GV +D K+A +Y++ A H L +H G G + A++L++ C+
Sbjct: 497 IGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWS 556
Query: 171 GCINAGYIYSVTKNFKEAIVRY 192
+ Y ++ A+++Y
Sbjct: 557 ERLMTAYNSYKDGDYNAAVIQY 578
Score = 65.9 bits (159), Expect = 4e-10
Identities = 48/190 (25%), Positives = 84/190 (43%), Gaps = 21/190 (11%)
Query: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKG-VGKDLKKAIQFYTKGCELNDGYGC 100
+Q+ +A +F A N FLG Y EG V + + A+ ++ K ++ + G
Sbjct: 391 EQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQ 450
Query: 101 NLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLY 160
+ LG Y G+GV + A +Y+ KA + +G + LGS+++ G+G +D ++AL +
Sbjct: 451 SGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYF 510
Query: 161 EKACDLKDSPGCINAGYIYS----VTKNFKEAIVRYSKACE--------------LKDGR 202
A N +++ V ++ A+ + CE KDG
Sbjct: 511 NLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDGD 570
Query: 203 GCYNLGVMQY 212
YN V+QY
Sbjct: 571 --YNAAVIQY 578
Score = 57.8 bits (138), Expect = 1e-07
Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 6/150 (4%)
Query: 85 IQFYTKGCELNDGYGCNLLGNLY-YNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLH 143
IQ+Y E D LG L+ + G+GV ++ ++A Y++ A + ++ LG ++
Sbjct: 361 IQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMY 420
Query: 144 HYGVG-TPKDLRKALDLYEKACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKACEL 198
G P+ AL ++KA D+ + G G Y V N+ A+ + KA E
Sbjct: 421 SEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQ 480
Query: 199 KDGRGCYNLGVMQYNAQGTAKDEKQAVENF 228
G LG M YN G +D KQA++ F
Sbjct: 481 GWVDGQLQLGSMYYNGIGVKRDYKQALKYF 510
>gb|AAH15313.1|AAH15313 (BC015313) hypothetical protein FLJ12439 [Homo sapiens]
Length = 231
Score = 67.0 bits (162), Expect = 2e-10
Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 15/171 (8%)
Query: 42 KQDFAQAKTHFEKACEL-KNGFGCVFLGAFYEEGKG-VGKDLKKAIQFYTKGCEL---ND 96
+++F +A + CE ++ C LGA+Y GKG + +DLK A + + CE
Sbjct: 48 RKNFDEAAKVLKFNCEENQHSDSCYKLGAYYVTGKGGLTQDLKAAARCFLMACEKPGKKS 107
Query: 97 GYGCNLLGNLYYNGQGVSKDAK----KASQYYSKACDLNHAEGCMVLGSLHHYGV-GTPK 151
C+ +G L ++GQ V++D + KA YY++ACD + C L ++ G G PK
Sbjct: 108 IAACHNVGLLAHDGQ-VNEDGQPDLGKARDYYTRACDGGYTSSCFNLSAMFLQGAPGFPK 166
Query: 152 DLRKALDLYEKACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKACEL 198
D+ A KACDL C NA +Y V K+ +A V ++A +L
Sbjct: 167 DMDLACKYSMKACDLGHIWACANASRMYKLGDGVDKDEAKAEVLKNRAQQL 217
Score = 46.6 bits (109), Expect = 3e-04
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 44 DFAQAKTHFEKACELKNGFGCVFLGAFYEEGK-GVGKDLKKAIQFYTKGCELNDGYGCNL 102
D +A+ ++ +AC+ C L A + +G G KD+ A ++ K C+L + C
Sbjct: 130 DLGKARDYYTRACDGGYTSSCFNLSAMFLQGAPGFPKDMDLACKYSMKACDLGHIWACAN 189
Query: 103 LGNLYYNGQGVSKDAKKASQYYSKACDLNHAE 134
+Y G GV KD KA ++A L+ +
Sbjct: 190 ASRMYKLGDGVDKDEAKAEVLKNRAQQLHREQ 221
>gb|EAA00460.1| (AAAB01008986) agCP9334 [Anopheles gambiae str. PEST]
Length = 228
Score = 66.6 bits (161), Expect = 2e-10
Identities = 47/153 (30%), Positives = 73/153 (46%), Gaps = 26/153 (16%)
Query: 100 CNLLGNLYYNGQGVSKDAKKASQYYSKACD-LNHAEGCMVLGSLHHYGVGTPK---DLRK 155
C+LLG+ +G+ KD +KA++ Y CD N+ + C+ G+ G G D K
Sbjct: 56 CHLLGDYL---EGIRKDFEKAAKVYRSNCDDYNYGKSCLKYGNYTFLGKGRTSEKGDPAK 112
Query: 156 ALDLYEKACDLKDSPGCINAGYIY-------SVTKNFKEAIVRYSKACELKDGRGCYNL- 207
A YEK C L D C+++G + +T++ + K+CE+ + C+ L
Sbjct: 113 AYAYYEKGCALNDPDACLHSGLLLVSKLMPKEITRDVPKGFELLKKSCEMNNAGACFYLS 172
Query: 208 -----GV-----MQYNAQGTAKDEKQAVENFKK 230
GV M GTA+DEK+A E +KK
Sbjct: 173 GMYISGVLKEDQMYAKGDGTARDEKKA-EKYKK 204
Score = 56.2 bits (134), Expect = 3e-07
Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 26 EPDAKELVNLGIESAKKQDFAQAKTHFEKACELKN-GFGCVFLGAFYEEGKGVGK---DL 81
+P+ L+ +E +K DF +A + C+ N G C+ G + GKG D
Sbjct: 52 KPEVCHLLGDYLEGIRK-DFEKAAKVYRSNCDDYNYGKSCLKYGNYTFLGKGRTSEKGDP 110
Query: 82 KKAIQFYTKGCELNDGYGCNLLGNLYYNG---QGVSKDAKKASQYYSKACDLNHAEGCMV 138
KA +Y KGC LND C G L + + +++D K + K+C++N+A C
Sbjct: 111 AKAYAYYEKGCALNDPDACLHSGLLLVSKLMPKEITRDVPKGFELLKKSCEMNNAGACFY 170
Query: 139 LGSLHHYGV-----------GTPKDLRKALDLYEKACDLKD 168
L ++ GV GT +D +KA + A +++D
Sbjct: 171 LSGMYISGVLKEDQMYAKGDGTARDEKKAEKYKKLALEMQD 211
>ref|NP_284256.1| (NC_003116) hypothetical protein [Neisseria meningitidis Z2491]
pir||H81845 hypothetical protein NMA1541 [imported] - Neisseria meningitidis
(group A strain Z2491)
emb|CAB84768.1| (AL162756) hypothetical protein [Neisseria meningitidis Z2491]
Length = 477
Score = 66.2 bits (160), Expect = 3e-10
Identities = 53/208 (25%), Positives = 82/208 (38%), Gaps = 35/208 (16%)
Query: 52 FEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQ 111
F++A + + L Y +GK ++ K A+ G +LG++Y G
Sbjct: 241 FQQAAQENDPDAHAALADIYLQGKHPERNYKLALHHAEAAAAERHPEGLRILGDIYRYGL 300
Query: 112 GVSKDAKKASQYYSKACD---------------LNH----------------AEGCMVLG 140
G++ D +KA YY +A + LNH AE
Sbjct: 301 GMTSDKEKALHYYRQAAEAGSLAAYQKLISDSALNHPDQYGGIKDSAIRRQRAERLYQKA 360
Query: 141 SLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKAC 196
HYG+ + AL LY +A +L S N G +Y +T ++ EA + KA
Sbjct: 361 QALHYGLQCAPEYAAALKLYTEAAELGHSKAQTNLGSMYYFGQGMTADYNEARKWFEKAA 420
Query: 197 ELKDGRGCYNLGVMQYNAQGTAKDEKQA 224
KD YNL + YN G D+++A
Sbjct: 421 AQKDSMALYNLACIHYNGHGVEPDKEKA 448
Score = 53.9 bits (128), Expect = 2e-06
Identities = 43/183 (23%), Positives = 71/183 (38%), Gaps = 35/183 (19%)
Query: 83 KAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSL 142
+A+ ++ + + ND L ++Y G+ ++ K A + A H EG +LG +
Sbjct: 236 EAVHWFQQAAQENDPDAHAALADIYLQGKHPERNYKLALHHAEAAAAERHPEGLRILGDI 295
Query: 143 HHYGVGTPKDLRKALDLYEKACDLKD--------SPGCINAGYIYSVTKN---------- 184
+ YG+G D KAL Y +A + S +N Y K+
Sbjct: 296 YRYGLGMTSDKEKALHYYRQAAEAGSLAAYQKLISDSALNHPDQYGGIKDSAIRRQRAER 355
Query: 185 -----------------FKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVEN 227
+ A+ Y++A EL + NLG M Y QG D +A +
Sbjct: 356 LYQKAQALHYGLQCAPEYAAALKLYTEAAELGHSKAQTNLGSMYYFGQGMTADYNEARKW 415
Query: 228 FKK 230
F+K
Sbjct: 416 FEK 418
Score = 47.0 bits (110), Expect = 2e-04
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 84 AIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLH 143
A++ YT+ EL LG++YY GQG++ D +A +++ KA + L +H
Sbjct: 376 ALKLYTEAAELGHSKAQTNLGSMYYFGQGMTADYNEARKWFEKAAAQKDSMALYNLACIH 435
Query: 144 HYGVGTPKDLRKALDLYEKACDLKDSPGCINAGY 177
+ G G D KA ++A IN GY
Sbjct: 436 YNGHGVEPDKEKACRYLQEA---------INNGY 460
Score = 46.6 bits (109), Expect = 3e-04
Identities = 27/104 (25%), Positives = 52/104 (49%), Gaps = 2/104 (1%)
Query: 31 ELVNLGIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTK 90
+ ++ G++ A ++A A + +A EL + LG+ Y G+G+ D +A +++ K
Sbjct: 361 QALHYGLQCAP--EYAAALKLYTEAAELGHSKAQTNLGSMYYFGQGMTADYNEARKWFEK 418
Query: 91 GCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAE 134
D L ++YNG GV D +KA +Y +A + + +
Sbjct: 419 AAAQKDSMALYNLACIHYNGHGVEPDKEKACRYLQEAINNGYGQ 462
>ref|NP_245305.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK02452.1| (AE006073) unknown [Pasteurella multocida]
Length = 242
Score = 66.2 bits (160), Expect = 3e-10
Identities = 42/129 (32%), Positives = 65/129 (49%), Gaps = 1/129 (0%)
Query: 103 LGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEK 162
LG LY GQGV +D +KA ++S+A + + L + G G +D+R ++ L+EK
Sbjct: 94 LGILYARGQGVPQDFEKAYWWFSEAAEKGSIKAINNLAVFYLQGHGVKQDIRHSITLFEK 153
Query: 163 ACDLKDSPGCINAGYIYSVTKN-FKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDE 221
+ + G IY N +A Y KA E + + L VM N +GT K++
Sbjct: 154 TANSGSLDAMLVLGQIYENELNQMTQAFKWYKKAAEAGNHDAQFRLAVMYENGEGTKKNK 213
Query: 222 KQAVENFKK 230
KQAV ++K
Sbjct: 214 KQAVYWYQK 222
>pir||T46587 hypothetical protein [imported] - Vogesella indigofera
gb|AAD54009.1|AF088857_1 (AF088857) hypothetical protein [Vogesella indigofera]
Length = 268
Score = 66.2 bits (160), Expect = 3e-10
Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 14/183 (7%)
Query: 67 LGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSK 126
LG YE+G GV +D KA +Y + N L LY NGQGV+++ +A ++ K
Sbjct: 51 LGVRYEKGSGVPQDFAKAATWYRQAATQGMPEAQNNLAVLYLNGQGVNQNDAEALAWFRK 110
Query: 127 ACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYSV----- 181
A AE + LG++ G GTPK+ +A+ KA + G + A Y ++
Sbjct: 111 AATQGQAEAQLNLGAMLMNGQGTPKNDDEAVVWTRKAA----AQGQLMADYNLAIMMREG 166
Query: 182 ---TKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGC--KSSV 236
++ A+ + K E NLG+M +G A+D + A+ +KG KS++
Sbjct: 167 RGLPQDDAAAVALFRKVAEQGVAIAQSNLGLMYKLGRGVAQDYQLALSWLRKGVAQKSAM 226
Query: 237 KEA 239
+A
Sbjct: 227 AQA 229
Score = 42.4 bits (98), Expect = 0.005
Identities = 27/85 (31%), Positives = 39/85 (45%)
Query: 43 QDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNL 102
QD A A F K E LG Y+ G+GV +D + A+ + KG
Sbjct: 171 QDDAAAVALFRKVAEQGVAIAQSNLGLMYKLGRGVAQDYQLALSWLRKGVAQKSAMAQAN 230
Query: 103 LGNLYYNGQGVSKDAKKASQYYSKA 127
LG LY G+GV++D +A ++ A
Sbjct: 231 LGVLYLEGKGVAQDDNEAVVWFRLA 255
>emb|CAB65792.2| (AL109657) dJ842G6.2 (novel protein imilar to SEL1L (sel-1
(suppressor of lin-12, C.elegans)-like)) [Homo sapiens]
Length = 505
Score = 65.5 bits (158), Expect = 5e-10
Identities = 43/160 (26%), Positives = 70/160 (42%)
Query: 39 SAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGY 98
+A Q+ A A +F A N G LG Y GKGV + +A++++ K E
Sbjct: 166 AAVPQNNATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPLNYAEALKYFQKAAEKGWPD 225
Query: 99 GCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALD 158
LG +YY+G G+ KD K A +Y+ A L ++ G G + R A++
Sbjct: 226 AQFQLGFMYYSGSGIWKDYKLAFKYFYLASQSGQPLAIYYLAKMYATGTGVVRSCRTAVE 285
Query: 159 LYEKACDLKDSPGCINAGYIYSVTKNFKEAIVRYSKACEL 198
LY+ C+L Y + ++V+Y+ E+
Sbjct: 286 LYKGVCELGHWAEKFLTAYFAYKDGDIDSSLVQYALLAEM 325
Score = 60.8 bits (146), Expect = 1e-08
Identities = 45/175 (25%), Positives = 77/175 (43%), Gaps = 6/175 (3%)
Query: 65 VFLGAFYEEG-KGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQ-GVSKDAKKASQ 122
V LG + G KG+ +D KA+ ++ K + +G +Y G V ++ A +
Sbjct: 118 VSLGQLHLIGRKGLDQDYYKALHYFLKAAKAGSANAMAFIGKMYLEGNAAVPQNNATAFK 177
Query: 123 YYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY--- 179
Y+S A +A G LG L+ +G G P + +AL ++KA + G++Y
Sbjct: 178 YFSMAASKGNAIGLHGLGLLYFHGKGVPLNYAEALKYFQKAAEKGWPDAQFQLGFMYYSG 237
Query: 180 -SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCK 233
+ K++K A + A + Y L M G + + AVE +K C+
Sbjct: 238 SGIWKDYKLAFKYFYLASQSGQPLAIYYLAKMYATGTGVVRSCRTAVELYKGVCE 292
Score = 58.9 bits (141), Expect = 5e-08
Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 5/161 (3%)
Query: 43 QDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKG-VGKDLKKAIQFYTKGCELNDGYGCN 101
QD+ +A +F KA + + F+G Y EG V ++ A ++++ + G +
Sbjct: 133 QDYYKALHYFLKAAKAGSANAMAFIGKMYLEGNAAVPQNNATAFKYFSMAASKGNAIGLH 192
Query: 102 LLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYE 161
LG LY++G+GV + +A +Y+ KA + + LG +++ G G KD + A +
Sbjct: 193 GLGLLYFHGKGVPLNYAEALKYFQKAAEKGWPDAQFQLGFMYYSGSGIWKDYKLAFKYFY 252
Query: 162 KACDLKDSPGCINAGYIYS----VTKNFKEAIVRYSKACEL 198
A +Y+ V ++ + A+ Y CEL
Sbjct: 253 LASQSGQPLAIYYLAKMYATGTGVVRSCRTAVELYKGVCEL 293
>ref|NP_075565.1| (NM_023077) hypothetical protein FLJ12439 [Homo sapiens]
dbj|BAB14063.1| (AK022501) unnamed protein product [Homo sapiens]
Length = 231
Score = 65.5 bits (158), Expect = 5e-10
Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 15/171 (8%)
Query: 42 KQDFAQAKTHFEKACEL-KNGFGCVFLGAFYEEGKG-VGKDLKKAIQFYTKGCEL---ND 96
+++F +A + CE ++ C LGA Y GKG + +DLK A + + CE
Sbjct: 48 RKNFDEAAKVLKFNCEENQHSDSCYKLGAHYVTGKGGLTQDLKAAARCFLMACEKPGKKS 107
Query: 97 GYGCNLLGNLYYNGQGVSKDAK----KASQYYSKACDLNHAEGCMVLGSLHHYGV-GTPK 151
C+ +G L ++GQ V++D + KA YY++ACD + C L ++ G G PK
Sbjct: 108 IAACHNVGLLAHDGQ-VNEDGQPDLGKARDYYTRACDGGYTSSCFNLSAMFLQGAPGFPK 166
Query: 152 DLRKALDLYEKACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKACEL 198
D+ A KACDL C NA +Y V K+ +A V ++A +L
Sbjct: 167 DMDLACKYSMKACDLGHIWACANASRMYKLGDGVDKDEAKAEVLKNRAQQL 217
Score = 46.6 bits (109), Expect = 3e-04
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 44 DFAQAKTHFEKACELKNGFGCVFLGAFYEEGK-GVGKDLKKAIQFYTKGCELNDGYGCNL 102
D +A+ ++ +AC+ C L A + +G G KD+ A ++ K C+L + C
Sbjct: 130 DLGKARDYYTRACDGGYTSSCFNLSAMFLQGAPGFPKDMDLACKYSMKACDLGHIWACAN 189
Query: 103 LGNLYYNGQGVSKDAKKASQYYSKACDLNHAE 134
+Y G GV KD KA ++A L+ +
Sbjct: 190 ASRMYKLGDGVDKDEAKAEVLKNRAQQLHREQ 221
>ref|NP_273467.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||F81200 conserved hypothetical protein NMB0419 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF40857.1| (AE002398) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 198
Score = 63.5 bits (153), Expect = 2e-09
Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 4/149 (2%)
Query: 103 LGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEK 162
LG +YY G+GV +D +A ++Y +A + A+ LG ++ G G +D +A+ Y +
Sbjct: 47 LGAMYYKGRGVRRDDAEAVRWYRQAAEQGLAQAQYNLGWMYANGRGVRQDDTEAVRWYRQ 106
Query: 163 ACDLKDSPGCINAGYIYS----VTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTA 218
A N G IY+ V ++ EA+ + +A + NLGVM +G
Sbjct: 107 AAAQGVVQAQYNLGVIYAEGRGVRQDDVEAVRWFRQAAAQGVAQAQNNLGVMYAERRGVR 166
Query: 219 KDEKQAVENFKKGCKSSVKEACDALKELK 247
+D A E F K C++ ++ CD + LK
Sbjct: 167 QDRALAQEWFGKACQNGDQDGCDNDQRLK 195
Score = 60.1 bits (144), Expect = 2e-08
Identities = 48/182 (26%), Positives = 82/182 (44%), Gaps = 4/182 (2%)
Query: 29 AKELVNLGIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFY 88
A L+ LG+ A D +A N LGA Y +G+GV +D +A+++Y
Sbjct: 9 AAALIALGLNRAVWADDVSDFRENLQAAAQGNAAAQYNLGAMYYKGRGVRRDDAEAVRWY 68
Query: 89 TKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVG 148
+ E LG +Y NG+GV +D +A ++Y +A + LG ++ G G
Sbjct: 69 RQAAEQGLAQAQYNLGWMYANGRGVRQDDTEAVRWYRQAAAQGVVQAQYNLGVIYAEGRG 128
Query: 149 TPKDLRKALDLYEKACDLKDSPGCINAGYIYSVTKNFKE----AIVRYSKACELKDGRGC 204
+D +A+ + +A + N G +Y+ + ++ A + KAC+ D GC
Sbjct: 129 VRQDDVEAVRWFRQAAAQGVAQAQNNLGVMYAERRGVRQDRALAQEWFGKACQNGDQDGC 188
Query: 205 YN 206
N
Sbjct: 189 DN 190
>ref|NP_405544.1| (NC_003143) putative exported protein [Yersinia pestis]
emb|CAC90802.1| (AJ414150) putative exported protein [Yersinia pestis]
Length = 720
Score = 62.4 bits (150), Expect = 4e-09
Identities = 44/149 (29%), Positives = 69/149 (45%), Gaps = 8/149 (5%)
Query: 103 LGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEK 162
LG +Y Q D + ++ K+ D + + +L +++ G G +D K K
Sbjct: 573 LGKYHYTCQ----DYDRGLKWLEKSADHKNIKALFLLAQMYNEGDGVKEDQTKYFSYLLK 628
Query: 163 ACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTA 218
A L S + GY+Y V KN EA + KA E + YNLG + N GT
Sbjct: 629 AAQLGLSDAQVEIGYLYLVGEGVEKNLPEAYQWHIKAAEQGNVHAHYNLGWIYQNGDGTE 688
Query: 219 KDEKQAVENFKKGCKSSVKEACDALKELK 247
K+ +A +F KS ++EA + LK+L+
Sbjct: 689 KNLDKAKFHFTVAAKSGMREAYEELKKLE 717
Score = 58.5 bits (140), Expect = 6e-08
Identities = 40/137 (29%), Positives = 61/137 (44%)
Query: 20 LRGLMAEPDAKELVNLGIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGK 79
+R ++ D LG QD+ + EK+ + KN L Y EG GV +
Sbjct: 558 IREKASQSDDNAQYELGKYHYTCQDYDRGLKWLEKSADHKNIKALFLLAQMYNEGDGVKE 617
Query: 80 DLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVL 139
D K + K +L +G LY G+GV K+ +A Q++ KA + + L
Sbjct: 618 DQTKYFSYLLKAAQLGLSDAQVEIGYLYLVGEGVEKNLPEAYQWHIKAAEQGNVHAHYNL 677
Query: 140 GSLHHYGVGTPKDLRKA 156
G ++ G GT K+L KA
Sbjct: 678 GWIYQNGDGTEKNLDKA 694
Score = 44.7 bits (104), Expect = 0.001
Identities = 27/86 (31%), Positives = 45/86 (51%)
Query: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCN 101
K+D + ++ KA +L V +G Y G+GV K+L +A Q++ K E + +
Sbjct: 616 KEDQTKYFSYLLKAAQLGLSDAQVEIGYLYLVGEGVEKNLPEAYQWHIKAAEQGNVHAHY 675
Query: 102 LLGNLYYNGQGVSKDAKKASQYYSKA 127
LG +Y NG G K+ KA +++ A
Sbjct: 676 NLGWIYQNGDGTEKNLDKAKFHFTVA 701
>ref|NP_564049.1| (NM_101684) expressed protein [Arabidopsis thaliana]
gb|AAF78381.1|AC069551_14 (AC069551) T10O22.22 [Arabidopsis thaliana]
Length = 678
Score = 62.4 bits (150), Expect = 4e-09
Identities = 45/169 (26%), Positives = 77/169 (44%), Gaps = 6/169 (3%)
Query: 67 LGAFYEEG-KGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYS 125
+G FY G +G+ +D KA+ ++ K + + LLG +Y G GV ++ KA ++ +
Sbjct: 248 IGLFYYFGLRGLRRDHTKALHWFLKAVDKGEPRSMELLGEIYARGAGVERNYTKALEWLT 307
Query: 126 KACDLNHAEGCMVLGSLHHYGVGT-PKDLRKALDLYEKACDLKDSPGCINAGYIY----S 180
A +G L+ G G K+ KA + +EKA D +D G N G +Y
Sbjct: 308 LAAKEGLYSAFNGIGYLYVKGYGVDKKNYTKAREYFEKAVDNEDPSGHYNLGVLYLKGIG 367
Query: 181 VTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFK 229
V ++ ++A + A + Y L M + G K+ + A +K
Sbjct: 368 VNRDVRQATKYFFVAANAGQPKAFYQLAKMFHTGVGLKKNLEMATSFYK 416
Score = 56.6 bits (135), Expect = 2e-07
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 46 AQAKTHFEKACE-----LKNGFGCVFLGAFYEEGKGVGKDLK---KAIQFYTKGCELNDG 97
A + ++ KA E K G F G Y KG G D K KA +++ K + D
Sbjct: 293 AGVERNYTKALEWLTLAAKEGLYSAFNGIGYLYVKGYGVDKKNYTKAREYFEKAVDNEDP 352
Query: 98 YGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKAL 157
G LG LY G GV++D ++A++Y+ A + + L + H GVG K+L A
Sbjct: 353 SGHYNLGVLYLKGIGVNRDVRQATKYFFVAANAGQPKAFYQLAKMFHTGVGLKKNLEMAT 412
Query: 158 DLYE 161
Y+
Sbjct: 413 SFYK 416
Score = 55.8 bits (133), Expect = 4e-07
Identities = 37/116 (31%), Positives = 56/116 (47%), Gaps = 1/116 (0%)
Query: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCN 101
++D +A F KA + LG Y G GV ++ KA+++ T + N
Sbjct: 260 RRDHTKALHWFLKAVDKGEPRSMELLGEIYARGAGVERNYTKALEWLTLAAKEGLYSAFN 319
Query: 102 LLGNLYYNGQGV-SKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKA 156
+G LY G GV K+ KA +Y+ KA D G LG L+ G+G +D+R+A
Sbjct: 320 GIGYLYVKGYGVDKKNYTKAREYFEKAVDNEDPSGHYNLGVLYLKGIGVNRDVRQA 375
Score = 48.1 bits (113), Expect = 9e-05
Identities = 23/82 (28%), Positives = 44/82 (53%)
Query: 82 KKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGS 141
++A + + E + + L+G+ YY G+G +D +A++ Y A ++A+ LG
Sbjct: 489 ERAHSLWWRASEQGNEHAALLIGDAYYYGRGTERDFVRAAEAYMHAKSQSNAQAMFNLGY 548
Query: 142 LHHYGVGTPKDLRKALDLYEKA 163
+H +G G P DL A Y+++
Sbjct: 549 MHEHGQGLPFDLHLAKRYYDES 570
>ref|NP_274346.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||B81095 conserved hypothetical protein NMB1327 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF41702.1| (AE002481) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 467
Score = 62.0 bits (149), Expect = 6e-09
Identities = 51/208 (24%), Positives = 82/208 (38%), Gaps = 35/208 (16%)
Query: 52 FEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQ 111
F++A + + L Y +GK + ++ K A+ G +LG++ G
Sbjct: 231 FQQAAQENDPDAHAALADIYLQGKHLERNHKLALHHAEAAAAERHPEGLRILGDICRYGL 290
Query: 112 GVSKDAKKASQYYSKACD---------------LNH----------------AEGCMVLG 140
G++ D +KA YY +A + LNH AE
Sbjct: 291 GIAPDTEKARHYYRQAAEAGSLSAYQKLISDSALNHPDQYGGIKDSAIRRQRAERLYQKA 350
Query: 141 SLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKAC 196
HYG+ + AL LY +A +L S N G +Y +T ++ EA + KA
Sbjct: 351 QALHYGLQCAPEYAAALKLYTEAAELGHSKAQTNLGSMYYFGQGMTADYNEARKWFEKAA 410
Query: 197 ELKDGRGCYNLGVMQYNAQGTAKDEKQA 224
KD YNL + Y+ G D+++A
Sbjct: 411 AKKDSMAFYNLACIHYSGHGVEPDKEKA 438
Score = 50.8 bits (120), Expect = 1e-05
Identities = 42/183 (22%), Positives = 70/183 (37%), Gaps = 35/183 (19%)
Query: 83 KAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSL 142
+A+ ++ + + ND L ++Y G+ + ++ K A + A H EG +LG +
Sbjct: 226 EAVHWFQQAAQENDPDAHAALADIYLQGKHLERNHKLALHHAEAAAAERHPEGLRILGDI 285
Query: 143 HHYGVGTPKDLRKALDLYEKACDLKD--------SPGCINAGYIYSVTKN---------- 184
YG+G D KA Y +A + S +N Y K+
Sbjct: 286 CRYGLGIAPDTEKARHYYRQAAEAGSLSAYQKLISDSALNHPDQYGGIKDSAIRRQRAER 345
Query: 185 -----------------FKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVEN 227
+ A+ Y++A EL + NLG M Y QG D +A +
Sbjct: 346 LYQKAQALHYGLQCAPEYAAALKLYTEAAELGHSKAQTNLGSMYYFGQGMTADYNEARKW 405
Query: 228 FKK 230
F+K
Sbjct: 406 FEK 408
Score = 48.5 bits (114), Expect = 7e-05
Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 24/182 (13%)
Query: 11 GVLCLGTLCLRGLMAEPDAKELVNLGIESAKKQDF-AQAKTHFEKACELKNGFGCVFLGA 69
G+ LG +C GL PD ++ + ++A+ A K + A + +G + A
Sbjct: 278 GLRILGDICRYGLGIAPDTEKARHYYRQAAEAGSLSAYQKLISDSALNHPDQYGGIKDSA 337
Query: 70 F--------YEEGKGVGKDLK------KAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSK 115
Y++ + + L+ A++ YT+ EL LG++YY GQG++
Sbjct: 338 IRRQRAERLYQKAQALHYGLQCAPEYAAALKLYTEAAELGHSKAQTNLGSMYYFGQGMTA 397
Query: 116 DAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINA 175
D +A +++ KA + L +H+ G G D KA ++A IN
Sbjct: 398 DYNEARKWFEKAAAKKDSMAFYNLACIHYSGHGVEPDKEKACRYLQEA---------INN 448
Query: 176 GY 177
GY
Sbjct: 449 GY 450
Score = 44.3 bits (103), Expect = 0.001
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 31 ELVNLGIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTK 90
+ ++ G++ A ++A A + +A EL + LG+ Y G+G+ D +A +++ K
Sbjct: 351 QALHYGLQCAP--EYAAALKLYTEAAELGHSKAQTNLGSMYYFGQGMTADYNEARKWFEK 408
Query: 91 GCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAE 134
D L ++Y+G GV D +KA +Y +A + + +
Sbjct: 409 AAAKKDSMAFYNLACIHYSGHGVEPDKEKACRYLQEAINNGYGQ 452
>ref|NP_106249.1| (NC_002678) unknown protein [Mesorhizobium loti]
dbj|BAB52035.1| (AP003007) unknown protein [Mesorhizobium loti]
Length = 1360
Score = 61.6 bits (148), Expect = 8e-09
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 4/145 (2%)
Query: 16 GTLCLRGLMAEPDAKELVNLGIESAK----KQDFAQAKTHFEKACELKNGFGCVFLGAFY 71
G LR A DAK L +G A+ K+D A A +EK+ EL +G FY
Sbjct: 1084 GPAALRDAAAGGDAKALFEIGSRYAESRGVKEDMAAAAKWYEKSAELGFAPAEYRIGNFY 1143
Query: 72 EEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLN 131
E+G GV +D+KK+ +Y E + + L L+ D + A+ ++ +A DL
Sbjct: 1144 EKGIGVARDIKKSKTWYQLAAEQGNASAMHNLAVLFAMAADGVTDNESAAHWFQEAADLG 1203
Query: 132 HAEGCMVLGSLHHYGVGTPKDLRKA 156
+ LG L GVG ++L ++
Sbjct: 1204 VKDSQFNLGILAAKGVGMKQNLEES 1228
Score = 53.5 bits (127), Expect = 2e-06
Identities = 32/112 (28%), Positives = 50/112 (44%)
Query: 67 LGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSK 126
+G+ Y E +GV +D+ A ++Y K EL +GN Y G GV++D KK+ +Y
Sbjct: 1103 IGSRYAESRGVKEDMAAAAKWYEKSAELGFAPAEYRIGNFYEKGIGVARDIKKSKTWYQL 1162
Query: 127 ACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYI 178
A + +A L L D A +++A DL N G +
Sbjct: 1163 AAEQGNASAMHNLAVLFAMAADGVTDNESAAHWFQEAADLGVKDSQFNLGIL 1214
Score = 52.0 bits (123), Expect = 6e-06
Identities = 33/149 (22%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 103 LGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEK 162
+G+ Y +GV +D A+++Y K+ +L A +G+ + G+G +D++K+ Y+
Sbjct: 1103 IGSRYAESRGVKEDMAAAAKWYEKSAELGFAPAEYRIGNFYEKGIGVARDIKKSKTWYQL 1162
Query: 163 ACDLKDSPGCINAGYIYS-----VTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGT 217
A + ++ N +++ VT N + A + +A +L +NLG++ G
Sbjct: 1163 AAEQGNASAMHNLAVLFAMAADGVTDN-ESAAHWFQEAADLGVKDSQFNLGILAAKGVGM 1221
Query: 218 AKDEKQAVENFKKGCKSSVKEACDALKEL 246
++ +++ + F K+ K+A E+
Sbjct: 1222 KQNLEESYKWFALVAKTGDKDAAAKRDEI 1250
>gb|AAK64159.1| (AY039982) unknown protein [Arabidopsis thaliana]
Length = 678
Score = 61.6 bits (148), Expect = 8e-09
Identities = 45/168 (26%), Positives = 76/168 (44%), Gaps = 6/168 (3%)
Query: 68 GAFYEEG-KGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSK 126
G FY G +G+ +D KA+ ++ K + + LLG +Y G GV ++ KA ++ +
Sbjct: 249 GLFYYFGLRGLRRDHTKALHWFLKAVDKGEPRSMELLGEIYARGAGVERNYTKALEWLTL 308
Query: 127 ACDLNHAEGCMVLGSLHHYGVGT-PKDLRKALDLYEKACDLKDSPGCINAGYIY----SV 181
A +G L+ G G K+ KA + +EKA D +D G N G +Y V
Sbjct: 309 AAKEGLYSAFNGIGYLYVKGYGVDKKNYTKAREYFEKAVDNEDPSGHYNLGVLYLKGIGV 368
Query: 182 TKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFK 229
++ ++A + A + Y L M + G K+ + A +K
Sbjct: 369 NRDVRQATKYFFVAANAGQPKAFYQLAKMFHTGVGLKKNLEMATSFYK 416
Score = 56.6 bits (135), Expect = 2e-07
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 46 AQAKTHFEKACE-----LKNGFGCVFLGAFYEEGKGVGKDLK---KAIQFYTKGCELNDG 97
A + ++ KA E K G F G Y KG G D K KA +++ K + D
Sbjct: 293 AGVERNYTKALEWLTLAAKEGLYSAFNGIGYLYVKGYGVDKKNYTKAREYFEKAVDNEDP 352
Query: 98 YGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKAL 157
G LG LY G GV++D ++A++Y+ A + + L + H GVG K+L A
Sbjct: 353 SGHYNLGVLYLKGIGVNRDVRQATKYFFVAANAGQPKAFYQLAKMFHTGVGLKKNLEMAT 412
Query: 158 DLYE 161
Y+
Sbjct: 413 SFYK 416
Score = 55.8 bits (133), Expect = 4e-07
Identities = 37/116 (31%), Positives = 56/116 (47%), Gaps = 1/116 (0%)
Query: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCN 101
++D +A F KA + LG Y G GV ++ KA+++ T + N
Sbjct: 260 RRDHTKALHWFLKAVDKGEPRSMELLGEIYARGAGVERNYTKALEWLTLAAKEGLYSAFN 319
Query: 102 LLGNLYYNGQGV-SKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKA 156
+G LY G GV K+ KA +Y+ KA D G LG L+ G+G +D+R+A
Sbjct: 320 GIGYLYVKGYGVDKKNYTKAREYFEKAVDNEDPSGHYNLGVLYLKGIGVNRDVRQA 375
Score = 48.1 bits (113), Expect = 9e-05
Identities = 23/82 (28%), Positives = 44/82 (53%)
Query: 82 KKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGS 141
++A + + E + + L+G+ YY G+G +D +A++ Y A ++A+ LG
Sbjct: 489 ERAHSLWWRASEQGNEHAALLIGDAYYYGRGTERDFVRAAEAYMHAKSQSNAQAMFNLGY 548
Query: 142 LHHYGVGTPKDLRKALDLYEKA 163
+H +G G P DL A Y+++
Sbjct: 549 MHEHGQGLPFDLHLAKRYYDES 570
>ref|NP_460954.1| (NC_003197) putative TPR repeat protein [Salmonella typhimurium
LT2]
gb|AAL20913.1| (AE008788) putative TPR repeat protein [Salmonella typhimurium LT2]
Length = 564
Score = 60.8 bits (146), Expect = 1e-08
Identities = 39/131 (29%), Positives = 62/131 (46%), Gaps = 4/131 (3%)
Query: 120 ASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY 179
A ++ +++ + NH + L ++ G G +D +K L KA +L +S + GY+
Sbjct: 429 AMKWLTQSAEQNHPGALLFLAYAYNDGDGVAQDSKKYLSYLFKAAELGESDAQLEVGYLN 488
Query: 180 SV----TKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSS 235
+ KN EA K+ + + + YNLG+M N G KD +A + K
Sbjct: 489 LIGEGMPKNLPEAYKWIKKSADQGNAQAHYNLGLMYRNGDGVEKDLNKAKLHLTAAVKGG 548
Query: 236 VKEACDALKEL 246
VK A ALKEL
Sbjct: 549 VKPALAALKEL 559
Score = 55.1 bits (131), Expect = 7e-07
Identities = 35/129 (27%), Positives = 61/129 (47%)
Query: 28 DAKELVNLGIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQF 87
D+ +LG + ++ A ++ E + +FL Y +G GV +D KK + +
Sbjct: 409 DSTAQYHLGKYEFECTNYDAAMKWLTQSAEQNHPGALLFLAYAYNDGDGVAQDSKKYLSY 468
Query: 88 YTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGV 147
K EL + +G L G+G+ K+ +A ++ K+ D +A+ LG ++ G
Sbjct: 469 LFKAAELGESDAQLEVGYLNLIGEGMPKNLPEAYKWIKKSADQGNAQAHYNLGLMYRNGD 528
Query: 148 GTPKDLRKA 156
G KDL KA
Sbjct: 529 GVEKDLNKA 537
>ref|NP_506144.1| (NM_073743) Yeast hypothetical gene L8167.5 like [Caenorhabditis
elegans]
pir||S68303 sel-1 protein - Caenorhabditis elegans
pir||T22223 sel-1 protein - Caenorhabditis elegans
gb|AAC47113.1| (U50829) SEL-1 [Caenorhabditis elegans]
emb|CAB01505.1| (Z78063) predicted using Genefinder~Similarity to Yeast predicted
gene L8167.5 (TR:G544502)~cDNA EST yk53e10.3 comes from
this gene~cDNA EST yk53e10.5 comes from this gene~cDNA
EST yk318c4.5 comes from this gene~cDNA EST yk342b8.3
comes from this gene~>
Length = 685
Score = 60.5 bits (145), Expect = 2e-08
Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 18/203 (8%)
Query: 61 GFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVS-KDAKK 119
G G ++L G+G+ ++ + A ++ E LG +Y +G + KD +K
Sbjct: 294 GLGQIYLAG----GRGLNQNFELAFRYLLAAAESGSADALTYLGKMYLDGTPFTPKDYQK 349
Query: 120 ASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY 179
+ +Y K+ D + VLG+++ G G K+ KAL L + D K++ G + ++
Sbjct: 350 SFEYLMKSADKSSPSAQAVLGAMYMKGKGVKKNYEKALKLLTLSADKKNADGQMYLAELH 409
Query: 180 --------SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKG 231
V ++FK+++ Y A + YNL M G + AV+ FK
Sbjct: 410 YKGVPTNKGVHRDFKKSVKLYQLASQNGHILAYYNLAQMHAAGTGVPRSCSHAVDLFKSV 469
Query: 232 CK-----SSVKEACDALKELKIE 249
+ + EA A K+ +++
Sbjct: 470 AERGKWGERLMEAHSAYKDNRVD 492
Score = 59.3 bits (142), Expect = 4e-08
Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Query: 43 QDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKG-VGKDLKKAIQFYTKGCELNDGYGCN 101
Q+F A + A E + +LG Y +G KD +K+ ++ K + +
Sbjct: 308 QNFELAFRYLLAAAESGSADALTYLGKMYLDGTPFTPKDYQKSFEYLMKSADKSSPSAQA 367
Query: 102 LLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGV----GTPKDLRKAL 157
+LG +Y G+GV K+ +KA + + + D +A+G M L LH+ GV G +D +K++
Sbjct: 368 VLGAMYMKGKGVKKNYEKALKLLTLSADKKNADGQMYLAELHYKGVPTNKGVHRDFKKSV 427
Query: 158 DLYEKA 163
LY+ A
Sbjct: 428 KLYQLA 433
>gb|AAC47112.1| (U50828) sel-1 gene product [Caenorhabditis elegans]
Length = 685
Score = 60.5 bits (145), Expect = 2e-08
Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 18/203 (8%)
Query: 61 GFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVS-KDAKK 119
G G ++L G+G+ ++ + A ++ E LG +Y +G + KD +K
Sbjct: 294 GLGQIYLAG----GRGLNQNFELAFRYLLAAAESGSADALTYLGKMYLDGTPFTPKDYQK 349
Query: 120 ASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY 179
+ +Y K+ D + VLG+++ G G K+ KAL L + D K++ G + ++
Sbjct: 350 SFEYLMKSADKSSPSAQAVLGAMYMKGKGVKKNYEKALKLLTLSADKKNADGQMYLAELH 409
Query: 180 --------SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKG 231
V ++FK+++ Y A + YNL M G + AV+ FK
Sbjct: 410 YKGVPTNKGVHRDFKKSVKLYQLASQNGHILAYYNLAQMHAAGTGVPRSCSHAVDLFKSV 469
Query: 232 CK-----SSVKEACDALKELKIE 249
+ + EA A K+ +++
Sbjct: 470 AERGKWGERLMEAHSAYKDNRVD 492
Score = 59.3 bits (142), Expect = 4e-08
Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Query: 43 QDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKG-VGKDLKKAIQFYTKGCELNDGYGCN 101
Q+F A + A E + +LG Y +G KD +K+ ++ K + +
Sbjct: 308 QNFELAFRYLLAAAESGSADALTYLGKMYLDGTPFTPKDYQKSFEYLMKSADKSSPSAQA 367
Query: 102 LLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGV----GTPKDLRKAL 157
+LG +Y G+GV K+ +KA + + + D +A+G M L LH+ GV G +D +K++
Sbjct: 368 VLGAMYMKGKGVKKNYEKALKLLTLSADKKNADGQMYLAELHYKGVPTNKGVHRDFKKSV 427
Query: 158 DLYEKA 163
LY+ A
Sbjct: 428 KLYQLA 433
>ref|NP_541444.1| (NC_003318) TETRATRICOPEPTIDE REPEAT FAMILY PROTEIN [Brucella
melitensis]
gb|AAL53708.1| (AE009683) TETRATRICOPEPTIDE REPEAT FAMILY PROTEIN [Brucella
melitensis]
Length = 317
Score = 59.7 bits (143), Expect = 3e-08
Identities = 36/143 (25%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Query: 103 LGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEK 162
+GN Y G+GV+++ K+A+++Y A D A +GS + G+G ++L KA Y+
Sbjct: 59 IGNRYMEGRGVAENVKEAAKWYQLAADQGFAPAQYRIGSFNEKGLGMARNLEKAKSWYQL 118
Query: 163 ACDLKDSPGCINAGYIYSV----TKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTA 218
A D ++ N +++ T + A+ +++A EL YNLG++ G
Sbjct: 119 AADQGNASAMHNLAVLFATGTNGTPDNAAAVRWFTEAAELGVKDSQYNLGILAAKGLGMP 178
Query: 219 KDEKQAVENFKKGCKSSVKEACD 241
+ +++ + F + K+A +
Sbjct: 179 VNLEESYKWFALAANAGDKDAAE 201
Score = 44.7 bits (104), Expect = 0.001
Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 4/157 (2%)
Query: 16 GTLCLRGLMAEPDAKELVNLGIESAKKQDFAQAKTHFEKACELKNGFGCV----FLGAFY 71
G LR A+ D + L +G + + A+ K +L G +G+F
Sbjct: 40 GPAALREAAAKGDIRALFEIGNRYMEGRGVAENVKEAAKWYQLAADQGFAPAQYRIGSFN 99
Query: 72 EEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLN 131
E+G G+ ++L+KA +Y + + + L L+ G + D A +++++A +L
Sbjct: 100 EKGLGMARNLEKAKSWYQLAADQGNASAMHNLAVLFATGTNGTPDNAAAVRWFTEAAELG 159
Query: 132 HAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKD 168
+ LG L G+G P +L ++ + A + D
Sbjct: 160 VKDSQYNLGILAAKGLGMPVNLEESYKWFALAANAGD 196
>ref|NP_496487.1| (NM_064086) ZK20.4.p [Caenorhabditis elegans]
pir||T27773 hypothetical protein ZK20.4 - Caenorhabditis elegans
emb|CAA93779.1| (Z69904) cDNA EST yk428d5.3 comes from this gene~cDNA EST yk428d5.5
comes from this gene~cDNA EST yk537a3.3 comes from this
gene~cDNA EST yk621h11.3 comes from this gene~cDNA EST
yk537a3.5 comes from this gene~cDNA EST yk621h11.5 comes
from this gene [>
Length = 249
Score = 59.7 bits (143), Expect = 3e-08
Identities = 54/203 (26%), Positives = 99/203 (48%), Gaps = 20/203 (9%)
Query: 27 PDAKELVNLGIESAKKQDFAQAKTHFEKACELKNGF--GCVFLGAFYEEGKGVGKD--LK 82
P++ +L+ +E A +Q+F A F+K C+ +N + C G + GK VG D L
Sbjct: 37 PESCQLLGEYME-ALQQNFQAAVAIFKKNCD-ENSYPKSCFKYGMYMLAGK-VGDDASLS 93
Query: 83 KAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSK-DAKKASQYYSKACDLNHAEGCMVLGS 141
K I+ C+ N GC L +++NG+ K D++KA +Y +AC+L E C +L +
Sbjct: 94 KMIRPMKIACDANIPQGCRYLSLVHWNGEKDRKADSEKAERYMRRACELEDGEACWLLST 153
Query: 142 LHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYSVTKNFKEAIVRYSKACELKDG 201
+ +G + + A + K+ ++ + S++++ +++ +ACE+
Sbjct: 154 WY---MGNKEKFKT-----NAAGEAKE----LDRAELGSLSRDMDKSLQFAIRACEMDIP 201
Query: 202 RGCYNLGVMQYNAQGTAKDEKQA 224
+ C N+ M G KD QA
Sbjct: 202 QSCANVSRMFKLGDGVPKDLDQA 224
Score = 53.1 bits (126), Expect = 3e-06
Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 23/146 (15%)
Query: 55 ACELKNGFGCVFLGAFYEEGKGVGK-DLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQ-- 111
AC+ GC +L + G+ K D +KA ++ + CEL DG C LL Y +
Sbjct: 102 ACDANIPQGCRYLSLVHWNGEKDRKADSEKAERYMRRACELEDGEACWLLSTWYMGNKEK 161
Query: 112 ------------------GVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDL 153
+S+D K+ Q+ +AC+++ + C + + G G PKDL
Sbjct: 162 FKTNAAGEAKELDRAELGSLSRDMDKSLQFAIRACEMDIPQSCANVSRMFKLGDGVPKDL 221
Query: 154 RKALDLYEKACDLKDS--PGCINAGY 177
+A ++A ++ ++ NAG+
Sbjct: 222 DQAKKYADRAKEIMETLRSNDTNAGF 247
Score = 52.8 bits (125), Expect = 4e-06
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 20/119 (16%)
Query: 32 LVNLGIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGK---------------- 75
LV+ E +K D +A+ + +ACEL++G C L +Y K
Sbjct: 116 LVHWNGEKDRKADSEKAERYMRRACELEDGEACWLLSTWYMGNKEKFKTNAAGEAKELDR 175
Query: 76 ----GVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDL 130
+ +D+ K++QF + CE++ C + ++ G GV KD +A +Y +A ++
Sbjct: 176 AELGSLSRDMDKSLQFAIRACEMDIPQSCANVSRMFKLGDGVPKDLDQAKKYADRAKEI 234
>gb|AAC37164.1| (L05770) putative regulatory protein PobS [Acinetobacter sp. ADP1]
Length = 392
Score = 58.5 bits (140), Expect = 6e-08
Identities = 33/115 (28%), Positives = 56/115 (48%)
Query: 67 LGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSK 126
L + Y G V +++ A+ +Y K ND G LG LY NG G+ K+ + + K
Sbjct: 239 LASMYLNGLDVTQNMSLALFWYEKTASQNDPEGELNLGKLYLNGLGIEKNYELGLTWIKK 298
Query: 127 ACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYSV 181
+ N+ + L L+ G KD+++AL Y+KA +L+ + G I+ +
Sbjct: 299 SVKQNYPDAYFTLAELYEKGHIVQKDIQQALIFYKKAANLRHATSAYRLGQIFEL 353
Score = 56.6 bits (135), Expect = 2e-07
Identities = 44/157 (28%), Positives = 65/157 (41%), Gaps = 15/157 (9%)
Query: 101 NLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLY 160
N L ++Y NG V+++ A +Y K N EG + LG L+ G+G K+ L
Sbjct: 237 NQLASMYLNGLDVTQNMSLALFWYEKTASQNDPEGELNLGKLYLNGLGIEKNYELGLTWI 296
Query: 161 EKACDLKDSPGCINAGYIYS----VTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQG 216
+K+ +Y V K+ ++A++ Y KA L+ Y LG + QG
Sbjct: 297 KKSVKQNYPDAYFTLAELYEKGHIVQKDIQQALIFYKKAANLRHATSAYRLGQIFELGQG 356
Query: 217 TAKDEK-------QAVENFKKGCKSSVKEACDALKEL 246
D K QA NF S K D L +L
Sbjct: 357 VTLDLKLAKRFYHQAASNF----SSEAKNRLDILDQL 389
Score = 55.8 bits (133), Expect = 4e-07
Identities = 36/121 (29%), Positives = 54/121 (43%)
Query: 43 QDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNL 102
Q+ + A +EK + G + LG Y G G+ K+ + + + K + N
Sbjct: 251 QNMSLALFWYEKTASQNDPEGELNLGKLYLNGLGIEKNYELGLTWIKKSVKQNYPDAYFT 310
Query: 103 LGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEK 162
L LY G V KD ++A +Y KA +L HA LG + G G DL+ A Y +
Sbjct: 311 LAELYEKGHIVQKDIQQALIFYKKAANLRHATSAYRLGQIFELGQGVTLDLKLAKRFYHQ 370
Query: 163 A 163
A
Sbjct: 371 A 371
>ref|XP_046437.2| (XM_046437) similar to dJ842G6.2 (novel protein imilar to SEL1L
(sel-1 (suppressor of lin-12, C.elegans)-like)) [Homo
sapiens]
Length = 387
Score = 58.2 bits (139), Expect = 8e-08
Identities = 42/148 (28%), Positives = 62/148 (41%), Gaps = 3/148 (2%)
Query: 39 SAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGY 98
+A Q+ A A +F A N G LG Y GKGV + +A++++ K E
Sbjct: 237 AAVPQNNATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPLNYAEALKYFQKAAEKGWPD 296
Query: 99 GCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALD 158
LG +YY+G G+ KD K A +Y+ A L ++ G G + R A+
Sbjct: 297 AQFQLGFMYYSGSGIWKDYKLAFKYFYLASQSGQPLAIYYLAKMYATGTGVVRSCRTAV- 355
Query: 159 LYEKACDLKDSPGCINAGYIYSVTKNFK 186
EK CI + Y + FK
Sbjct: 356 --EKRLTFLKKRRCIQWRFSYGIELPFK 381
Score = 57.0 bits (136), Expect = 2e-07
Identities = 43/168 (25%), Positives = 73/168 (42%), Gaps = 6/168 (3%)
Query: 65 VFLGAFYEEG-KGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQ-GVSKDAKKASQ 122
V LG + G KG+ +D KA+ ++ K + +G +Y G V ++ A +
Sbjct: 189 VSLGQLHLIGRKGLDQDYYKALHYFLKAAKAGSANAMAFIGKMYLEGNAAVPQNNATAFK 248
Query: 123 YYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY--- 179
Y+S A +A G LG L+ +G G P + +AL ++KA + G++Y
Sbjct: 249 YFSMAASKGNAIGLHGLGLLYFHGKGVPLNYAEALKYFQKAAEKGWPDAQFQLGFMYYSG 308
Query: 180 -SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVE 226
+ K++K A + A + Y L M G + + AVE
Sbjct: 309 SGIWKDYKLAFKYFYLASQSGQPLAIYYLAKMYATGTGVVRSCRTAVE 356
Score = 55.1 bits (131), Expect = 7e-07
Identities = 32/119 (26%), Positives = 60/119 (49%), Gaps = 1/119 (0%)
Query: 43 QDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKG-VGKDLKKAIQFYTKGCELNDGYGCN 101
QD+ +A +F KA + + F+G Y EG V ++ A ++++ + G +
Sbjct: 204 QDYYKALHYFLKAAKAGSANAMAFIGKMYLEGNAAVPQNNATAFKYFSMAASKGNAIGLH 263
Query: 102 LLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLY 160
LG LY++G+GV + +A +Y+ KA + + LG +++ G G KD + A +
Sbjct: 264 GLGLLYFHGKGVPLNYAEALKYFQKAAEKGWPDAQFQLGFMYYSGSGIWKDYKLAFKYF 322
>ref|NP_661851.1| (NC_002932) conserved hypothetical protein [Chlorobium tepidum TLS]
gb|AAM72193.1| (AE012860) conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 248
Score = 57.8 bits (138), Expect = 1e-07
Identities = 34/121 (28%), Positives = 59/121 (48%)
Query: 43 QDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNL 102
QD+A+A + A N +G Y G GV D +A+++Y + +
Sbjct: 101 QDYAEAMKWYRLAAAKDNDNAQNQIGYLYHHGWGVETDYAEAMKWYRISAAKGNFAAEDN 160
Query: 103 LGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEK 162
+G LY +GQGV +D +A ++Y + + E + +G+ + +G+G DL KA+ Y
Sbjct: 161 IGVLYEHGQGVEQDYAEAMRWYRISAAKGNGEAELNIGNFYQHGLGVELDLNKAVKWYRS 220
Query: 163 A 163
A
Sbjct: 221 A 221
Score = 46.6 bits (109), Expect = 3e-04
Identities = 27/99 (27%), Positives = 46/99 (46%)
Query: 44 DFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLL 103
D+A+A + + N +G YE G+GV +D +A+++Y +G +
Sbjct: 138 DYAEAMKWYRISAAKGNFAAEDNIGVLYEHGQGVEQDYAEAMRWYRISAAKGNGEAELNI 197
Query: 104 GNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSL 142
GN Y +G GV D KA ++Y A + E L ++
Sbjct: 198 GNFYQHGLGVELDLNKAVKWYRSAAAKGNEEAAQKLSAM 236
Score = 43.5 bits (101), Expect = 0.002
Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
Query: 102 LLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYE 161
L+ YY G+ V +D +A ++ + + +G ++ G+G P+D +A+ Y
Sbjct: 52 LIAMKYYYGRDVDRDYAEALKWLRLSAAKGNDAAEYAIGFMYQKGLGVPQDYAEAMKWYR 111
Query: 162 KACDLKDSPGCIN-AGYIY----SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQG 216
A KD+ N GY+Y V ++ EA+ Y + + N+GV+ + QG
Sbjct: 112 LAA-AKDNDNAQNQIGYLYHHGWGVETDYAEAMKWYRISAAKGNFAAEDNIGVLYEHGQG 170
Query: 217 TAKDEKQAVENFK 229
+D +A+ ++
Sbjct: 171 VEQDYAEAMRWYR 183
>ref|NP_455035.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
emb|CAD08897.1| (AL627266) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 384
Score = 56.6 bits (135), Expect = 2e-07
Identities = 30/116 (25%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 67 LGAFYEEGKGVGKDLK-KAIQFYTKGCELNDGYGCNLLGNLYYNGQ-GVSKDAKKASQYY 124
+G+ Y+ G D + +++Q++ K EL N+LG Y NG+ G+ +D +K Q+Y
Sbjct: 98 VGSLYDSGFVEVDDKEARSLQWFRKAAELGQADAQNILGYFYLNGKRGIKRDLQKGGQWY 157
Query: 125 SKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYS 180
A + + + LG +++ G P D +A + +E+A + S ++Y+
Sbjct: 158 ELAAAQGNVDALINLGEIYYSGTRVPLDYARAFEFFERAAKMGKSRALNYLAWMYT 213
Score = 52.0 bits (123), Expect = 6e-06
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 46 AQAKTHFEKACELKNGFGCVFLGAFYEEGK-GVGKDLKKAIQFYTKGCELNDGYGCNLLG 104
A++ F KA EL LG FY GK G+ +DL+K Q+Y + LG
Sbjct: 114 ARSLQWFRKAAELGQADAQNILGYFYLNGKRGIKRDLQKGGQWYELAAAQGNVDALINLG 173
Query: 105 NLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLY 160
+YY+G V D +A +++ +A + + L ++ G D RKA +L+
Sbjct: 174 EIYYSGTRVPLDYARAFEFFERAAKMGKSRALNYLAWMYTNGQFVDTDCRKAAELF 229
Score = 44.3 bits (103), Expect = 0.001
Identities = 26/106 (24%), Positives = 49/106 (45%), Gaps = 3/106 (2%)
Query: 24 MAEPDAKELVNLGIESAK---KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKD 80
+ + DA+ ++ + K K+D + +E A N + LG Y G V D
Sbjct: 126 LGQADAQNILGYFYLNGKRGIKRDLQKGGQWYELAAAQGNVDALINLGEIYYSGTRVPLD 185
Query: 81 LKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSK 126
+A +F+ + ++ N L +Y NGQ V D +KA++ +++
Sbjct: 186 YARAFEFFERAAKMGKSRALNYLAWMYTNGQFVDTDCRKAAELFAQ 231
>ref|NP_103302.1| (NC_002678) unknown protein [Mesorhizobium loti]
dbj|BAB49088.1| (AP002998) unknown protein [Mesorhizobium loti]
Length = 716
Score = 56.6 bits (135), Expect = 2e-07
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 4/139 (2%)
Query: 32 LVNLG----IESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQF 87
L+N+G + ++ D+ +A + +A L N +G+ Y G+GV K ++ + +
Sbjct: 466 LINMGYMARVGMGREIDYGRAFDPYVRAAALGNLRARTDIGSAYIAGQGVPKLPEEGVLW 525
Query: 88 YTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGV 147
Y LG+ Y G GV +D +A+ YS A D + LG + G
Sbjct: 526 YRLAASSGWANAITALGDAYRLGTGVKQDYVQAASLYSAAADTGQIDAMANLGQAYLAGE 585
Query: 148 GTPKDLRKALDLYEKACDL 166
G KD+ + L+L ++A D+
Sbjct: 586 GVKKDVPRGLELLQRANDM 604
Score = 48.9 bits (115), Expect = 5e-05
Identities = 35/147 (23%), Positives = 56/147 (37%)
Query: 45 FAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLG 104
++ A+ +E A + + +G G G D +A Y + L + +G
Sbjct: 447 YSWAEHFYELAGNQQYSAALINMGYMARVGMGREIDYGRAFDPYVRAAALGNLRARTDIG 506
Query: 105 NLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKAC 164
+ Y GQGV K ++ +Y A A LG + G G +D +A LY A
Sbjct: 507 SAYIAGQGVPKLPEEGVLWYRLAASSGWANAITALGDAYRLGTGVKQDYVQAASLYSAAA 566
Query: 165 DLKDSPGCINAGYIYSVTKNFKEAIVR 191
D N G Y + K+ + R
Sbjct: 567 DTGQIDAMANLGQAYLAGEGVKKDVPR 593
>ref|NP_518145.1| (NC_003295) PUTATIVE SIGNAL PEPTIDE PROTEIN [Ralstonia
solanacearum]
emb|CAD13552.1| (AL646057) PUTATIVE SIGNAL PEPTIDE PROTEIN [Ralstonia solanacearum]
Length = 252
Score = 56.2 bits (134), Expect = 3e-07
Identities = 40/182 (21%), Positives = 75/182 (40%), Gaps = 6/182 (3%)
Query: 25 AEPDAKELVNLGIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKA 84
A+ DA L + I + +F +A F +A + N G+G + A
Sbjct: 41 AQGDAAALTQIAIAHYEHNEFGRAIDEFAEAAQRGNRLAQFNYAMMLMRGEGTVAQPEAA 100
Query: 85 IQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHH 144
+++ + + + G L+ G+ V + +A+++Y +A H E L + +
Sbjct: 101 VKWLRRAADNQMTHAQFAYGELFERGELVPRSLPEANKWYERAAAGGHIEAQRALATNYF 160
Query: 145 YGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYS------VTKNFKEAIVRYSKACEL 198
G G P+D +A Y+KA + D P G Y V ++ ++A + Y +A
Sbjct: 161 TGRGVPRDYGRAFTWYKKAAEAGDGPSQYIVGSYYERGEPGVVAQDIEQAKLWYGRAAAQ 220
Query: 199 KD 200
D
Sbjct: 221 GD 222
>ref|NP_420846.1| (NC_002696) conserved hypothetical protein [Caulobacter crescentus
CB15]
gb|AAK24014.1| (AE005877) conserved hypothetical protein [Caulobacter crescentus
CB15]
Length = 330
Score = 55.8 bits (133), Expect = 4e-07
Identities = 47/209 (22%), Positives = 88/209 (41%), Gaps = 7/209 (3%)
Query: 38 ESAKKQDFAQAK--THFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELN 95
+SA+ QD+ E+A E + V L + G+G D+ K + + K L
Sbjct: 27 DSARAQDWRSQTDCAAVERAAEGGDTSFYVDLAICHIRGEGREPDVAKGLVWLRKAVALG 86
Query: 96 DGYGCNLLGNLY-YNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLR 154
D LGNLY + +G++ DA A + Y++A L + +H G G P++ R
Sbjct: 87 DTDAMVELGNLYLFGAEGLAVDAPGAVKLYARAARLGDPNAMFNMAVMHRGGYGLPENPR 146
Query: 155 KALDLYEKACDLKDSPGCINAGYI----YSVTKNFKEAIVRYSKACELKDGRGCYNLGVM 210
A Y ++ + + G AG Y + + ++ +A E+ LG +
Sbjct: 147 LARAWYLRSGEAGLAAGAFGAGVALLEGYGGRSDARRGVLWLRRAIEMGSAEAMNELGRL 206
Query: 211 QYNAQGTAKDEKQAVENFKKGCKSSVKEA 239
G + D +A+ ++ ++ + +A
Sbjct: 207 HAEGLGVSSDSDKALYFYRAAARNELPDA 235
Score = 53.9 bits (128), Expect = 2e-06
Identities = 53/228 (23%), Positives = 91/228 (39%), Gaps = 9/228 (3%)
Query: 16 GTLCLRGLMAEPDAKELVNLGI-----ESAKKQDFAQAKTHFEKACELKNGFGCVFLGAF 70
G + LR +A D +V LG D A + +A L + +
Sbjct: 75 GLVWLRKAVALGDTDAMVELGNLYLFGAEGLAVDAPGAVKLYARAARLGDPNAMFNMAVM 134
Query: 71 YEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDL 130
+ G G+ ++ + A +Y + E G G G G DA++ + +A ++
Sbjct: 135 HRGGYGLPENPRLARAWYLRSGEAGLAAGAFGAGVALLEGYGGRSDARRGVLWLRRAIEM 194
Query: 131 NHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKAC--DLKDSPGCINAGYIYS--VTKNFK 186
AE LG LH G+G D KAL Y A +L D+ + A + +N+
Sbjct: 195 GSAEAMNELGRLHAEGLGVSSDSDKALYFYRAAARNELPDAMYRLGAAHYNGRLTDRNYV 254
Query: 187 EAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKS 234
A+ + A + D + LGVM +G D + A++ +++ S
Sbjct: 255 VAMRWFQLAADRGDYDAWFALGVMCETGRGVKSDRELALQMYRRAADS 302
>ref|NP_223186.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71927 hypothetical protein jhp0468 - Helicobacter pylori (strain J99)
gb|AAD06051.1| (AE001481) putative [Helicobacter pylori J99]
Length = 283
Score = 55.1 bits (131), Expect = 7e-07
Identities = 64/235 (27%), Positives = 98/235 (41%), Gaps = 42/235 (17%)
Query: 36 GIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELN 95
G++ + + QA F+ A E G G V+L Y EGKGV D KKA QFY +
Sbjct: 64 GLDHFNQGQYKQAFKDFKLAQEYSIGLGNVYLAKMYLEGKGVKVDYKKA-QFYAQNA--I 120
Query: 96 DGYGCNL------LGNLYYNGQGVSKDAKKASQYY--------SKACDLNHAEG------ 135
GYG L LG + G G+ KD K+A + Y +K+ + + G
Sbjct: 121 KGYGSGLLGGALILGRMQAEGLGMKKDLKQALKTYRHVVRMFSNKSANFANKFGSNLAEF 180
Query: 136 -CMVLGS----LHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYSVTKNFKEAIV 190
M++GS L K K L +KA +KD+ T ++++
Sbjct: 181 TSMLIGSRFIDLSGLSANPIKFGNKFGILVKKALQIKDN------------TLSWEDIAE 228
Query: 191 RYSKACELKDGRG--CYNLGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEACDAL 243
S LK G Y +G+ GT K + +A + +K + ++A +AL
Sbjct: 229 ISSNIILLKQQMGEILYRIGIAYKEGLGTRKKKDRAKKFLQKSAEFGYEKAMEAL 283
>gb|AAG30966.1|AC012396_2 (AC012396) hypothetical protein, 3' partial [Arabidopsis thaliana]
Length = 392
Score = 54.7 bits (130), Expect = 9e-07
Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
Query: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGK-DLKKAIQFYTKGCELNDGYGC 100
++D A+A F KA NG LG Y +G GV K + KA +++ D G
Sbjct: 261 RRDHAKALYWFSKA--EFNG-----LGYLYVKGYGVDKRNYTKAREYFEMAANNEDPSGH 313
Query: 101 NLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLY 160
LG LY G GV KD + A++Y+ A + + L + H GVG K+L A Y
Sbjct: 314 YNLGVLYLKGTGVKKDVRHATKYFFVAANAGQPKAFYQLAKMFHTGVGLTKNLEMATTFY 373
Query: 161 E 161
+
Sbjct: 374 K 374
>ref|NP_177498.1| (NM_106015) hypothetical protein [Arabidopsis thaliana]
gb|AAG51809.1|AC079676_4 (AC079676) hypothetical protein; 26401-23451 [Arabidopsis thaliana]
Length = 604
Score = 54.7 bits (130), Expect = 9e-07
Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
Query: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGK-DLKKAIQFYTKGCELNDGYGC 100
++D A+A F KA NG LG Y +G GV K + KA +++ D G
Sbjct: 261 RRDHAKALYWFSKA--EFNG-----LGYLYVKGYGVDKRNYTKAREYFEMAANNEDPSGH 313
Query: 101 NLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLY 160
LG LY G GV KD + A++Y+ A + + L + H GVG K+L A Y
Sbjct: 314 YNLGVLYLKGTGVKKDVRHATKYFFVAANAGQPKAFYQLAKMFHTGVGLTKNLEMATTFY 373
Query: 161 E 161
+
Sbjct: 374 K 374
Score = 48.5 bits (114), Expect = 7e-05
Identities = 24/81 (29%), Positives = 43/81 (52%)
Query: 83 KAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSL 142
+A + + E + + L+G+ YY G+G +D +A++ Y A ++A+ LG +
Sbjct: 448 RAHSLWWRASEQGNEHAALLIGDAYYYGRGTERDFVRAAEAYMYAKSQSNAQAMFNLGYM 507
Query: 143 HHYGVGTPKDLRKALDLYEKA 163
H +G G P DL A Y++A
Sbjct: 508 HEHGEGLPFDLHLAKRYYDQA 528
>ref|NP_249051.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa]
pir||F83599 hypothetical protein PA0360 [imported] - Pseudomonas aeruginosa
(strain PAO1)
gb|AAG03749.1|AE004474_1 (AE004474) hypothetical protein [Pseudomonas aeruginosa]
Length = 328
Score = 53.1 bits (126), Expect = 3e-06
Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 42/211 (19%)
Query: 26 EPDAKELVNLGIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAI 85
EP A L + G ++Q++A A+ + KA + L Y +G G +D +A
Sbjct: 60 EPQA--LFDFGAYFYQQQNYASAREWWGKAAAAGMVRAQIQLAMLYRDGDGGPQDKTEAA 117
Query: 86 QFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHY 145
+++ K E D N +G LY+ G+GV +D KA ++ +A + LG +
Sbjct: 118 RWFRKAAEQGDAAAQNEMGVLYWRGEGVDQDRVKAGTWFERAAASGSEDAETNLGWFY-- 175
Query: 146 GVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYSVTKNFKEAIV-RYS----------- 193
L DS G +YS T + + A++ RY+
Sbjct: 176 --------------------LDDSQG------VYSATSDEEAALLDRYAGSREKAFQWFC 209
Query: 194 KACELKDGRGCYNLGVMQYNAQGTAKDEKQA 224
KA D R + +G +N G ++ QA
Sbjct: 210 KAATQGDARAQFKVGEAYWNGSGAGMNKLQA 240
>ref|NP_207316.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||G64584 conserved hypothetical protein HP0519 - Helicobacter pylori
(strain 26695)
gb|AAD07587.1| (AE000566) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 276
Score = 52.8 bits (125), Expect = 4e-06
Identities = 40/125 (32%), Positives = 52/125 (41%), Gaps = 33/125 (26%)
Query: 36 GIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELN 95
G++ + + QA F A E G G V+L Y EGKGV D KKA QFY +
Sbjct: 56 GLDHFNQGQYQQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKA-QFYAENA--I 112
Query: 96 DGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRK 155
GYG LLG G ++LG + G+G KDL++
Sbjct: 113 KGYGSGLLG------------------------------GALILGRMQAEGLGMKKDLKQ 142
Query: 156 ALDLY 160
AL Y
Sbjct: 143 ALKTY 147
>ref|NP_638122.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM42046.1| (AE012390) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 252
Score = 52.0 bits (123), Expect = 6e-06
Identities = 34/119 (28%), Positives = 53/119 (43%), Gaps = 4/119 (3%)
Query: 83 KAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSL 142
+A+ K + D LL LY G+GV+ D +A +Y A + H E LG
Sbjct: 21 QAVALLRKAADRQDVAAQLLLAQLYAEGRGVAADPIQAMLWYEVAANAGHPEAMNQLGRC 80
Query: 143 HHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYS----VTKNFKEAIVRYSKACE 197
H G GTP +L A + +A G N ++Y+ V ++ +A+ Y +A E
Sbjct: 81 HELGFGTPCNLELAALWFRRAAAHGLDWGMYNLAHLYASGRGVAQDHTQALALYRRAAE 139
Score = 43.9 bits (102), Expect = 0.002
Identities = 32/120 (26%), Positives = 52/120 (42%)
Query: 46 AQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGN 105
AQA KA + ++ + L Y EG+GV D +A+ +Y N LG
Sbjct: 20 AQAVALLRKAADRQDVAAQLLLAQLYAEGRGVAADPIQAMLWYEVAANAGHPEAMNQLGR 79
Query: 106 LYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACD 165
+ G G + + A+ ++ +A G L L+ G G +D +AL LY +A +
Sbjct: 80 CHELGFGTPCNLELAALWFRRAAAHGLDWGMYNLAHLYASGRGVAQDHTQALALYRRAAE 139
>ref|NP_455031.1| (NC_003198) probable secreted protein [Salmonella enterica subsp.
enterica serovar Typhi]
emb|CAD08893.1| (AL627266) probable secreted protein [Salmonella enterica subsp.
enterica serovar Typhi]
Length = 223
Score = 51.6 bits (122), Expect = 8e-06
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 67 LGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSK 126
LG +E G V + ++A+Q+Y + CEL YGC + Y +G GV+KD+ +A++Y K
Sbjct: 56 LGFIHEYGLNVPMNREQALQYYKQACELGGNYGCYNVKYAYQHGDGVAKDSAQANKYAKK 115
Score = 44.3 bits (103), Expect = 0.001
Identities = 29/88 (32%), Positives = 40/88 (44%), Gaps = 8/88 (9%)
Query: 100 CNLLGNLYYN----GQGVSKDAKKASQYYSKACDL----NHAEGCMVLGSLHHYGVGTPK 151
C L G L+ N + SKD K + K D A LG +H YG+ P
Sbjct: 9 CILAGVLFANQVNASENNSKDDVKYAALTQKDFDALPVEKRASVLDELGFIHEYGLNVPM 68
Query: 152 DLRKALDLYEKACDLKDSPGCINAGYIY 179
+ +AL Y++AC+L + GC N Y Y
Sbjct: 69 NREQALQYYKQACELGGNYGCYNVKYAY 96
Score = 44.3 bits (103), Expect = 0.001
Identities = 32/86 (37%), Positives = 43/86 (49%), Gaps = 3/86 (3%)
Query: 145 YGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYSVTKNFKEAIVRYSKACELKDGRGC 204
Y T KD AL + EK + D G I+ Y +V N ++A+ Y +ACEL GC
Sbjct: 33 YAALTQKDF-DALPV-EKRASVLDELGFIHE-YGLNVPMNREQALQYYKQACELGGNYGC 89
Query: 205 YNLGVMQYNAQGTAKDEKQAVENFKK 230
YN+ + G AKD QA + KK
Sbjct: 90 YNVKYAYQHGDGVAKDSAQANKYAKK 115
>ref|NP_459433.1| (NC_003197) putative periplasmic protein [Salmonella typhimurium
LT2]
gb|AAL19392.1| (AE008715) putative periplasmic protein [Salmonella typhimurium
LT2]
Length = 503
Score = 50.8 bits (120), Expect = 1e-05
Identities = 23/60 (38%), Positives = 36/60 (59%)
Query: 67 LGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSK 126
LG +E G V + ++A+Q+Y + CEL YGC + Y G GV+KD+ +A++Y K
Sbjct: 56 LGFIHEYGLSVPMNRERALQYYKQACELGGNYGCYNVKYAYQYGDGVAKDSAQANKYAKK 115
Score = 45.1 bits (105), Expect = 7e-04
Identities = 34/86 (39%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 145 YGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYSVTKNFKEAIVRYSKACELKDGRGC 204
Y T KDL AL + EK + D G I+ Y SV N + A+ Y +ACEL GC
Sbjct: 33 YAALTQKDL-DALPV-EKRASVLDELGFIHE-YGLSVPMNRERALQYYKQACELGGNYGC 89
Query: 205 YNLGVMQYNAQGTAKDEKQAVENFKK 230
YN+ G AKD QA + KK
Sbjct: 90 YNVKYAYQYGDGVAKDSAQANKYAKK 115
Score = 44.3 bits (103), Expect = 0.001
Identities = 29/102 (28%), Positives = 50/102 (48%), Gaps = 5/102 (4%)
Query: 67 LGAFYEEGKG----VGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQ 122
LG Y G+G + D+++A ++Y + + D LG +YY+G D KA
Sbjct: 242 LGGIYSGGEGDEWGIKPDIQEAQKWYGQAAKQGDSDAQIALGKIYYSGATGRTDYAKALA 301
Query: 123 YYSKA-CDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKA 163
+++ D ++ M L +++ G+GT D KA Y+KA
Sbjct: 302 LFTQVENDGTNSRSTMPLSWMYYNGLGTAPDCDKAWSYYKKA 343
Score = 43.1 bits (100), Expect = 0.003
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 139 LGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIY 179
LG +H YG+ P + +AL Y++AC+L + GC N Y Y
Sbjct: 56 LGFIHEYGLSVPMNRERALQYYKQACELGGNYGCYNVKYAY 96
>ref|NP_253206.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa]
pir||F83081 hypothetical protein PA4516 [imported] - Pseudomonas aeruginosa
(strain PAO1)
gb|AAG07904.1|AE004865_5 (AE004865) hypothetical protein [Pseudomonas aeruginosa]
Length = 271
Score = 50.8 bits (120), Expect = 1e-05
Identities = 39/156 (25%), Positives = 64/156 (41%)
Query: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCN 101
++D A+T F A E + L E G G D A Y + +
Sbjct: 57 QRDPTLARTWFTIAAERGHAMARNMLARCLEHGWGGPADPAAAAVHYRIAAQAGLDWARY 116
Query: 102 LLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYE 161
L NL+ G+GV +D +A Y +A + HA+ ++G H G+ +DL +A Y
Sbjct: 117 NLANLHATGRGVPQDQPRAYALYRQAAEQGHAKSMNLVGRYHEEGLVVARDLAQAAHWYR 176
Query: 162 KACDLKDSPGCINAGYIYSVTKNFKEAIVRYSKACE 197
++ + D G + + S + EA +A E
Sbjct: 177 RSAEGGDFRGQFSHAAMLSASGRHAEAETWLRRALE 212
Score = 43.5 bits (101), Expect = 0.002
Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 4/148 (2%)
Query: 67 LGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSK 126
LG +G+G+ +D A ++T E N+L +G G D A+ +Y
Sbjct: 46 LGQILLDGQGIQRDPTLARTWFTIAAERGHAMARNMLARCLEHGWGGPADPAAAAVHYRI 105
Query: 127 ACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYS----VT 182
A L +LH G G P+D +A LY +A + + G + V
Sbjct: 106 AAQAGLDWARYNLANLHATGRGVPQDQPRAYALYRQAAEQGHAKSMNLVGRYHEEGLVVA 165
Query: 183 KNFKEAIVRYSKACELKDGRGCYNLGVM 210
++ +A Y ++ E D RG ++ M
Sbjct: 166 RDLAQAAHWYRRSAEGGDFRGQFSHAAM 193
>gb|AAL47061.1|AF326613_1 (AF326613) JHP318-like protein [Helicobacter pylori]
Length = 46
Score = 50.4 bits (119), Expect = 2e-05
Identities = 22/45 (48%), Positives = 31/45 (68%)
Query: 35 LGIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGK 79
+G++S++ +D+ QAK +FEKAC L NG GC L Y G+GV K
Sbjct: 1 MGVKSSEAKDYIQAKKYFEKACGLNNGGGCGALAVLYINGQGVEK 45
Score = 42.4 bits (98), Expect = 0.005
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 79 KDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSK 115
KD +A +++ K C LN+G GC L LY NGQGV K
Sbjct: 9 KDYIQAKKYFEKACGLNNGGGCGALAVLYINGQGVEK 45
>ref|NP_459434.1| (NC_003197) putative TPR repeat protein [Salmonella typhimurium
LT2]
gb|AAL19393.1| (AE008716) putative TPR repeat protein [Salmonella typhimurium LT2]
Length = 427
Score = 48.9 bits (115), Expect = 5e-05
Identities = 35/127 (27%), Positives = 55/127 (42%), Gaps = 3/127 (2%)
Query: 4 NVKKTLFGVLCLGTLCLRGLMAEPDAKELVNLGIESAK---KQDFAQAKTHFEKACELKN 60
N KT+ L L + + D++ L+ E A + D +A+ +E A + N
Sbjct: 148 NETKTIDIAEALKWLRISAEKGDADSQTLLGFLYEHAGLGLQPDGEKARKWYEMAAQQGN 207
Query: 61 GFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKA 120
G LG Y G V D KA+ F+ K E + L +Y+NGQ V D +++
Sbjct: 208 GEALYTLGRMYYSGVLVNVDYDKALYFFKKAYEKKLQEAADYLAQMYFNGQSVDVDCQQS 267
Query: 121 SQYYSKA 127
YY +
Sbjct: 268 WHYYDNS 274
Score = 41.6 bits (96), Expect = 0.008
Identities = 18/44 (40%), Positives = 26/44 (58%)
Query: 116 DAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDL 159
D +A +YY +ACDL+ GC + YG+GT KD+ +A L
Sbjct: 2 DIPQAIKYYEQACDLDGDYGCFNAAYFYEYGIGTQKDITQAKTL 45
Score = 41.6 bits (96), Expect = 0.008
Identities = 33/128 (25%), Positives = 56/128 (42%), Gaps = 5/128 (3%)
Query: 102 LLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLH-HYGVGTPKDLRKALDLY 160
L+ LY+N + + D +A ++ + + A+ +LG L+ H G+G D KA Y
Sbjct: 140 LVSTLYFNNETKTIDIAEALKWLRISAEKGDADSQTLLGFLYEHAGLGLQPDGEKARKWY 199
Query: 161 EKACDLKDSPGCINAGYIY----SVTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQG 216
E A + G +Y V ++ +A+ + KA E K L M +N Q
Sbjct: 200 EMAAQQGNGEALYTLGRMYYSGVLVNVDYDKALYFFKKAYEKKLQEAADYLAQMYFNGQS 259
Query: 217 TAKDEKQA 224
D +Q+
Sbjct: 260 VDVDCQQS 267
>ref|NP_253774.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa]
pir||A83011 hypothetical protein PA5087 [imported] - Pseudomonas aeruginosa
(strain PAO1)
gb|AAG08472.1|AE004921_9 (AE004921) hypothetical protein [Pseudomonas aeruginosa]
Length = 289
Score = 48.1 bits (113), Expect = 9e-05
Identities = 40/149 (26%), Positives = 59/149 (38%), Gaps = 10/149 (6%)
Query: 69 AFYEEGKGVGKD-----LKKAIQFYTKGCELNDGYGCNLLGNLYYNGQ--GVSKDAKKAS 121
A+Y E + K + ++ Y+K E + L NLY G GV KD +KA
Sbjct: 41 AWYREAAALAKPDTLRPWGRIVEIYSKAVERGHWKAMHNLANLYRTGWPGGVEKDPQKAL 100
Query: 122 QYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYSV 181
Y K DL+ +G +G++ G L +KA L + P G +Y
Sbjct: 101 DLYQKMIDLDVPQGFYDMGAMIGNRAGVKNPATDGLTFLDKAASLGNPPALTELGKLYIY 160
Query: 182 TKNFKEAIVRYSKACELKDG--RGCYNLG 208
KE + Y+ +C G Y LG
Sbjct: 161 VAKEKELGLAYA-SCASSQGYAPASYELG 188
>ref|NP_473246.1| (NC_000521) predicted using hexExon; MAL3P4.5 (PFC0550w),
Hypothetical protein, len: 808 aa [Plasmodium
falciparum]
pir||T18454 hypothetical protein C0550w - malaria parasite (Plasmodium
falciparum)
emb|CAA15596.1| (AL008970) hypothetical protein, PFC0550w [Plasmodium falciparum
3D7]
Length = 807
Score = 47.8 bits (112), Expect = 1e-04
Identities = 40/167 (23%), Positives = 70/167 (40%), Gaps = 8/167 (4%)
Query: 28 DAKELVNLGIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQF 87
D + +LG + ++++F QA + +A + N LG Y G GV KD+ K+I+
Sbjct: 450 DVMAMYDLGKKYKEEKNFKQAFKYINEASKKNNLLALKELGIIYLYGYGVQKDINKSIEN 509
Query: 88 YTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGV 147
++K E D LG +YY G K+ + + +Y +A ++ E L + +
Sbjct: 510 FSKAAEAGDVESKCYLGYIYYFIDGY-KNLELSLKYLIEAASHDYGEAFFFLAEI-ILDI 567
Query: 148 GTPKD------LRKALDLYEKACDLKDSPGCINAGYIYSVTKNFKEA 188
K LYE + DL +Y + K K++
Sbjct: 568 SMRKQYISDYVYEVVFKLYEHSADLGYVQAYFREAQLYEIGKGVKQS 614
>ref|NP_643252.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM37788.1| (AE011936) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 252
Score = 47.4 bits (111), Expect = 1e-04
Identities = 38/142 (26%), Positives = 63/142 (43%), Gaps = 3/142 (2%)
Query: 24 MAEPDAKELVNLGIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKK 83
M+EP A ++ L + + A+A+ H KA + + L Y EG+G+ D
Sbjct: 1 MSEP-ALDIAQLSALLRTQPEQARARLH--KAAANHDVGAQLLLAQMYAEGRGIAADPAA 57
Query: 84 AIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLH 143
A+ +Y N LG + G G + +A A +Y +A + A G L ++
Sbjct: 58 AMLWYEVAANAGCAEAMNQLGRCHELGFGTAINAVLAVLWYRRAAEHGLAWGMYNLAHMY 117
Query: 144 HYGVGTPKDLRKALDLYEKACD 165
G G +D +AL LY +A +
Sbjct: 118 ASGRGVAQDHAQALALYHRAAE 139
Score = 45.1 bits (105), Expect = 7e-04
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Query: 67 LGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSK 126
LG +E G G + A+ +Y + E +G L ++Y +G+GV++D +A Y +
Sbjct: 77 LGRCHELGFGTAINAVLAVLWYRRAAEHGLAWGMYNLAHMYASGRGVAQDHAQALALYHR 136
Query: 127 ACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGY 177
A + HA+ L G+ D A Y ++ + D G AGY
Sbjct: 137 AAEAGHAKSMNFLARYLDQGLACAADPLAACVWYRRSAEAGDFRG--QAGY 185
Score = 44.3 bits (103), Expect = 0.001
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 102 LLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYE 161
LL +Y G+G++ D A +Y A + AE LG H G GT + A+ Y
Sbjct: 40 LLAQMYAEGRGIAADPAAAMLWYEVAANAGCAEAMNQLGRCHELGFGTAINAVLAVLWYR 99
Query: 162 KACDLKDSPGCINAGYIYS----VTKNFKEAIVRYSKACE 197
+A + + G N ++Y+ V ++ +A+ Y +A E
Sbjct: 100 RAAEHGLAWGMYNLAHMYASGRGVAQDHAQALALYHRAAE 139
>ref|NP_286374.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_308712.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
gb|AAG54982.1|AE005243_11 (AE005243) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB34108.1| (AP002552) hypothetical protein [Escherichia coli O157:H7]
Length = 184
Score = 47.0 bits (110), Expect = 2e-04
Identities = 28/102 (27%), Positives = 50/102 (48%)
Query: 41 KKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGC 100
K D+ QA+ +E++ E +N LG Y +G GV D +KAI +Y + E +
Sbjct: 80 KPLDYTQARYWYEQSAEQENPRAQSKLGWIYLKGLGVKPDTRKAILWYKEAAEQGYAHAQ 139
Query: 101 NLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSL 142
LG +Y NG G++ + ++ ++ A ++ +L L
Sbjct: 140 YTLGLIYRNGSGINVNHYESQKWLKLAAKQHYKNAERLLAGL 181
>ref|NP_102363.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB48149.1| (AP002995) hypothetical protein [Mesorhizobium loti]
Length = 577
Score = 46.6 bits (109), Expect = 3e-04
Identities = 52/214 (24%), Positives = 77/214 (35%), Gaps = 35/214 (16%)
Query: 35 LGIESAKKQ--DFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGC 92
LG AK Q DFA+A + +A E + L + Y G GV +D+++ ++
Sbjct: 285 LGDRHAKTQRPDFAEAANWYRRAAEAGHQAAARALASLYLTGNGVAEDVEEGARWLRSSA 344
Query: 93 ELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKD 152
+ L NL G G D + ++ A LG GVG +D
Sbjct: 345 SAGNQQAQTDLANLILGGAGEPDDGASVAGWFEAAASSGDLIAAFNLGLCFAKGVGVRQD 404
Query: 153 LRKALDLYEKACDLKDSPGCINAGYIYSVTKNFKEAIVRYSKACELKDGRGCYNLGVMQY 212
+A +A + G A Y+Y A L+DGR
Sbjct: 405 EGQAAHWLRRAAE-----GVAEAQYMY---------------ARLLQDGR---------- 434
Query: 213 NAQGTAKDEKQAVENFKKGCKSSVKEACDALKEL 246
G A D QA F + + V +A AL E+
Sbjct: 435 ---GVAADPTQARVWFARAADAGVLDARVALAEM 465
Score = 43.5 bits (101), Expect = 0.002
Identities = 33/128 (25%), Positives = 52/128 (39%), Gaps = 1/128 (0%)
Query: 38 ESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDG 97
+SA K DF A KA E + G LG G +D A ++Y K
Sbjct: 113 DSAGKPDFTAAFDFATKAAEAGSATGQAILGYILTSGPASMRDADAAHRWYEKSASAGCA 172
Query: 98 YGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKAL 157
GC L L +G ++ + ++ +A D +L L +G+G +D+ A
Sbjct: 173 EGC-LGFALSLARRGKRENRVRIAEEVRRAADAGLPTATYLLAVLTEHGLGVARDMAAAA 231
Query: 158 DLYEKACD 165
LY+ A +
Sbjct: 232 QLYQAAAE 239
>ref|NP_010078.1| (NC_001136) Hypothetical ORF; Ydl203cp [Saccharomyces cerevisiae]
pir||S67762 hypothetical protein YDL203c - yeast (Saccharomyces cerevisiae)
emb|CAA98781.1| (Z74251) ORF YDL203c [Saccharomyces cerevisiae]
emb|CAA67465.1| (X99000) ORF D1066 [Saccharomyces cerevisiae]
Length = 623
Score = 46.6 bits (109), Expect = 3e-04
Identities = 35/113 (30%), Positives = 53/113 (45%), Gaps = 12/113 (10%)
Query: 79 KDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVS---------KDAKKASQYYSKACD 129
K+ +KA+++Y K +LN+ C G + +G S + KKA QYY +
Sbjct: 344 KNDEKALEYYCKAAKLNNSDACYRAGVCFEYQRGTSSLDPSPTKEQCIKKAFQYYQHGAE 403
Query: 130 LNHAEGCMV-LGSLHHYGVGTPK-DLRKALDLYEKACDLKDSPGCI-NAGYIY 179
+ CM LG H YG+ K D+ A+ ++KA DSP + G IY
Sbjct: 404 VCSNSACMYKLGMSHLYGLNMQKTDVLLAIKWFDKAAQKGDSPQTLYELGKIY 456
>ref|NP_596099.1| (NC_003423) very putative chitin synthase regulatory factor
[Schizosaccharomyces pombe]
pir||T40386 hypothetical protein SPBC3E7.12c - fission yeast
(Schizosaccharomyces pombe)
emb|CAA19015.1| (AL023534) very putative chitin synthase regulatory factor
[Schizosaccharomyces pombe]
Length = 456
Score = 46.2 bits (108), Expect = 3e-04
Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 4/143 (2%)
Query: 31 ELVNLGIESAKKQDFAQAKTHFEKACELKNGFGCVFLG-AFYEEGKGVGKDLKKAIQFYT 89
EL L + QD + A L + +G AF+ G ++ +A+Q+Y
Sbjct: 298 ELAELYKQRGTSQDLKSILPLYMLAASLGHDRSSFLVGEAFFYGTYGARENKLRALQYYH 357
Query: 90 KGCELNDGYGCNLLGNLYYNGQG--VSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGV 147
+ + L LY G + +++A +Y +A L HA C VLG + GV
Sbjct: 358 LANDKGNADAMLALCKLYLRGLPGHIFPSSRRAFEYAHRAAMLGHAPACYVLGKFYETGV 417
Query: 148 GTPKDLRKALDLYEKACDLKDSP 170
G KDL K+ + +A + DSP
Sbjct: 418 GCVKDLAKS-EAGFRAGLINDSP 439
>ref|NP_602587.1| (NC_003454) Tetratricopeptide repeat family protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gb|AAL93886.1| (AE010481) Tetratricopeptide repeat family protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 628
Score = 46.2 bits (108), Expect = 3e-04
Identities = 43/163 (26%), Positives = 67/163 (40%), Gaps = 20/163 (12%)
Query: 79 KDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVS----KDAKKASQYYSKACDLNHAE 134
++L K I+ YT+ E ++YYN +G+S K ++A Y++A +LN
Sbjct: 7 EELLKEIEEYTEKIEKEPN------NDIYYNNRGLSYFLLKKYEEAINDYNRAIELNLNN 60
Query: 135 GCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCI--NAGYIYSVTKNFKEAIVRY 192
Y D KA++ Y+KA L + C N G+ Y + EAI Y
Sbjct: 61 ASYYYNRACSYYCSNKYD--KAIEDYDKAIKLNPNDACYFNNRGHSYFALNKYSEAIEDY 118
Query: 193 SKACELKDGRGC--YNLGVMQYNAQGTAKDEKQAVENFKKGCK 233
KA +L Y G Y +A+E++ K K
Sbjct: 119 DKAIKLDPNNASYYYKRGFSYY----ALNKYDKAIEDYNKAIK 157
Score = 45.1 bits (105), Expect = 7e-04
Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 24/161 (14%)
Query: 83 KAIQFYTKGCEL--NDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLG 140
KAI+ Y K +L N+ + G++YY K K+ + Y+KA L+
Sbjct: 147 KAIEDYNKAIKLDPNNAAYFSSRGDIYY----YEKAYNKSIEDYNKAIKLDPNN------ 196
Query: 141 SLHHYGVGTP----KDLRKALDLYEKACDLKDSPG--CINAGYIYSVTKNFKEAIVRYSK 194
+ ++ G K ++A++ Y KA L + C N G+ Y+ K +KEAI Y K
Sbjct: 197 AFYYDNRGLAYEKLKKYKEAINDYNKAIKLNPNNAFYCYNRGFTYNKLKKYKEAINDYDK 256
Query: 195 ACELKDGRGCY--NLGVMQYNAQGTAKDEKQAVENFKKGCK 233
A +L Y N GV YN G + +A+E++ K K
Sbjct: 257 AIKLDPNNASYFNNRGV-AYNNLG---EYSKALEDYDKAIK 293
>ref|NP_455032.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
emb|CAD08894.1| (AL627266) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 181
Score = 45.4 bits (106), Expect = 6e-04
Identities = 30/102 (29%), Positives = 50/102 (48%), Gaps = 5/102 (4%)
Query: 67 LGAFYEEGKG----VGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQ 122
LG Y G+G + D+++A ++Y + E D LG +YY+G D KA
Sbjct: 47 LGGIYSGGEGDEWGIKPDIQEAQKWYGQASEQGDSDAQIALGKIYYSGATGRTDYAKALA 106
Query: 123 YYSKA-CDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKA 163
+++ D ++ M L +++ G+GT D KA Y+KA
Sbjct: 107 LFTQVENDGTNSRSTMPLSWMYYNGLGTAPDCDKAWSYYKKA 148
Score = 42.4 bits (98), Expect = 0.005
Identities = 31/95 (32%), Positives = 42/95 (43%), Gaps = 5/95 (5%)
Query: 36 GIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELN 95
G E K D +A+ + +A E + + LG Y G D KA+ +T+ N
Sbjct: 56 GDEWGIKPDIQEAQKWYGQASEQGDSDAQIALGKIYYSGATGRTDYAKALALFTQ--VEN 113
Query: 96 DGYGCNL---LGNLYYNGQGVSKDAKKASQYYSKA 127
DG L +YYNG G + D KA YY KA
Sbjct: 114 DGTNSRSTMPLSWMYYNGLGTAPDCDKAWSYYKKA 148
>ref|NP_539245.1| (NC_003317) TETRATRICOPEPTIDE REPEAT FAMILY PROTEIN [Brucella
melitensis]
gb|AAL51509.1| (AE009475) TETRATRICOPEPTIDE REPEAT FAMILY PROTEIN [Brucella
melitensis]
Length = 298
Score = 45.4 bits (106), Expect = 6e-04
Identities = 39/131 (29%), Positives = 55/131 (41%), Gaps = 6/131 (4%)
Query: 93 ELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKD 152
E D L+ +Y G GV D KKA+++Y KA + E +L G KD
Sbjct: 48 EKGDAASQTLIAEIYARGLGVPADQKKAAEWYGKAAEQGITEAQFRYAALLLQGTYVQKD 107
Query: 153 LRKALDLYEKACDLKDSPGCINAGYIYSVTKNFKE----AIVRYSKACELKDGRGCYNLG 208
+KA +L KA + ++ N G + V K A + KA + K G Y
Sbjct: 108 PQKAEELMLKAAEGGNAMAQFNYGQMLMVKHPGKPGLDLAFPWFQKAADAKLADGEY--A 165
Query: 209 VMQYNAQGTAK 219
+ Q A GT K
Sbjct: 166 ISQIYANGTDK 176
>ref|NP_415180.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P77296|YBET_ECOLI Hypothetical protein ybeT
pir||E64799 ybeT protein - Escherichia coli
gb|AAB40848.1| (U82598) hypothetical protein [Escherichia coli]
gb|AAC73748.1| (AE000169) orf, hypothetical protein [Escherichia coli K12]
dbj|BAA35294.1| (D90704) Hypothetical protein SPAC24B11.10c [Escherichia coli]
dbj|BAA35299.1| (D90705) Hypothetical protein SPAC24B11.10c [Escherichia coli]
Length = 184
Score = 45.4 bits (106), Expect = 6e-04
Identities = 25/74 (33%), Positives = 39/74 (51%)
Query: 41 KKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGC 100
K D+ QA+ +E++ E +N LG Y +G GV D +KAI +Y + E +
Sbjct: 80 KPLDYTQARYWYEQSAEQENPRAQSKLGWIYLKGLGVKPDTRKAILWYKEAAEQGYAHAQ 139
Query: 101 NLLGNLYYNGQGVS 114
LG +Y NG G++
Sbjct: 140 YTLGLIYRNGSGIN 153
>ref|NP_619470.1| (NC_003552) hypothetical protein (multi-domain) [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM07950.1| (AE011183) hypothetical protein (multi-domain) [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 692
Score = 45.1 bits (105), Expect = 7e-04
Identities = 57/237 (24%), Positives = 101/237 (42%), Gaps = 42/237 (17%)
Query: 28 DAKELVNLGIESAKKQDFAQAKTHFEKACEL------KNGFGCV--FLGAFYEEGKGVGK 79
D K+L++LGI K +A+ EKA E+ K G LG Y++ +
Sbjct: 454 DGKDLLDLGIFLIKISKPYEARKCLEKAEEIFSKNHDKVGISSTSHSLGIIYQQQGNYEE 513
Query: 80 DLKKAIQFYTKGCELNDGYGCNL----LGNLYYNGQGVSKDAKKASQYYSKACDLNHAEG 135
+KK Q EL D G + LGN++Y+ + KK Y+++ ++N G
Sbjct: 514 AVKKYNQSLEMKEELGDKSGIAITLYQLGNIHYSQGNYEEAVKK----YNQSLEMNKKPG 569
Query: 136 --------CMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPG--------CINAGYIY 179
LG +HH + +A+ Y ++ ++K+ G G I+
Sbjct: 570 DKSGIAKTLHQLGMIHH----DKGNYEEAVKKYNQSLEIKEELGDKSGIAITLHQLGNIH 625
Query: 180 SVTKNFKEAIVRYSKACELKDGRGCYN-LGVMQYNAQGTAKD-----EKQAVENFKK 230
N++EA+ +Y+++ ++K+ G + + + KD EK ENF+K
Sbjct: 626 YSQGNYEEAVKKYNQSLKIKEELGDKSGIAKTLHQLDRIKKDMDRLKEKMGEENFEK 682
>ref|NP_521481.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
emb|CAD17150.1| (AL646074) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
Length = 276
Score = 44.7 bits (104), Expect = 0.001
Identities = 23/90 (25%), Positives = 42/90 (46%)
Query: 76 GVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEG 135
GV +D +A+ + + D LG +Y +G G + + A+ ++ A
Sbjct: 141 GVARDYPRALHLLRQAADRGDAAAAYYLGLMYRSGYGTAANTALAAHWFDGAARHGIPAA 200
Query: 136 CMVLGSLHHYGVGTPKDLRKALDLYEKACD 165
+L + + G G P+D +AL LYE+A +
Sbjct: 201 MFMLANAYRDGDGVPRDEARALALYEQAAE 230
>ref|NP_595669.1| (NC_003423) hypothetical protein [Schizosaccharomyces pombe]
pir||T40051 hypothetical protein SPBC28F2.08c - fission yeast
(Schizosaccharomyces pombe)
emb|CAB57937.1| (AL121795) hypothetical protein [Schizosaccharomyces pombe]
Length = 713
Score = 44.7 bits (104), Expect = 0.001
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 79 KDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLN-HAEGCM 137
++ + A+ +Y++ N + +G+ Y G G S + A YYS+A ++ A
Sbjct: 472 RNARIAMNYYSRAAARNHIHSLIKIGDFYRMGLGTSAKPELAFSYYSQAAAIHPSALAYW 531
Query: 138 VLGSLHHYGVGTPKDLRKALDLYEKA 163
LG +H YGVG P D A Y+ A
Sbjct: 532 RLGWMHEYGVGVPVDFEMAKKNYDNA 557
>ref|NP_616298.1| (NC_003552) O-linked GlcNAc transferase [Methanosarcina acetivorans
str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM04778.1| (AE010806) O-linked GlcNAc transferase [Methanosarcina acetivorans
str. C2A] [Methanosarcina acetivorans C2A]
Length = 400
Score = 43.9 bits (102), Expect = 0.002
Identities = 52/190 (27%), Positives = 84/190 (43%), Gaps = 25/190 (13%)
Query: 23 LMAEPDAKEL-VNLGIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGK-- 79
L PD KE GI + + +A ++KA E+ GF L A+Y +G +
Sbjct: 182 LEESPDYKEAWAGKGIALGQMGRYDEAIIAYDKAIEIDPGF----LEAWYYKGVDLDSLG 237
Query: 80 DLKKAIQFYTKGCEL---NDGYGCNL---LGNLYYNGQGVSKDAKKASQYYSKACDLNHA 133
++A++ Y K EL ND N+ L NL + ++ KA S+ D+ +
Sbjct: 238 SHRQALKAYEKAVELDPENDDAWNNMGIDLENLEKYEEAINA-FDKAIAINSENSDVWYN 296
Query: 134 EGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDS--PGCINAGYIYSVTKNFKEAIVR 191
+G L +H + +A++ Y KA L + G++ + KNF+EA+
Sbjct: 297 KG-FTLSQMHRF--------EEAVEAYRKATQLDPEYLEAYTSLGFVLAQLKNFEEALET 347
Query: 192 YSKACELKDG 201
Y KA EL G
Sbjct: 348 YEKALELDQG 357
>ref|NP_585810.1| (NC_003233) putative SKT5-like protein [Encephalitozoon cuniculi]
emb|CAD25414.1| (AL590446) putative SKT5-like protein [Encephalitozoon cuniculi]
Length = 388
Score = 43.9 bits (102), Expect = 0.002
Identities = 34/109 (31%), Positives = 47/109 (42%), Gaps = 11/109 (10%)
Query: 69 AFYEEGKGVGKDL-KKAIQFYTK---GCELNDGYGCNLLGNLYYNGQG-------VSKDA 117
A EE + K+ KK ++F +K E + Y L Y G G + KD
Sbjct: 58 AAQEENQDAMKEFNKKCLEFLSKTISSSEKSHPYDSTLSEAQTYMGLGYEFGLFGLRKDG 117
Query: 118 KKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDL 166
+ A YYS A NH G +G G+G P++ R ALD Y + L
Sbjct: 118 RMAIGYYSSAARQNHPVGTFRMGQCLEKGIGKPRNHRHALDFYRCSAKL 166
>ref|NP_435252.1| (NC_003037) hypothetical protein [Sinorhizobium meliloti]
gb|AAK64664.1| (AE007195) hypothetical protein [Sinorhizobium meliloti]
Length = 244
Score = 43.9 bits (102), Expect = 0.002
Identities = 29/106 (27%), Positives = 49/106 (45%)
Query: 44 DFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLL 103
D+ A ++ +A E + L EG+ + D +A ++ E L
Sbjct: 85 DYGIAAEYYRRAAEKGDAPAQDMLSWLLLEGEIMTADPLEARRWAECAAEAGIASSMTRL 144
Query: 104 GNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGT 149
G L++N GV +DA+KA ++ KA + A+ +LG+ H G GT
Sbjct: 145 GMLHHNALGVERDAQKAVYWWLKAAERGDADAQAMLGAACHMGAGT 190
>ref|XP_130572.1| (XM_130572) similar to dJ842G6.2 (novel protein imilar to SEL1L
(sel-1 (suppressor of lin-12, C.elegans)-like)) [Mus
musculus]
Length = 273
Score = 43.9 bits (102), Expect = 0.002
Identities = 22/62 (35%), Positives = 36/62 (57%), Gaps = 1/62 (1%)
Query: 103 LGNLYYNGQGVSKDAKKASQYYSKACDLNH-AEGCMVLGSLHHYGVGTPKDLRKALDLYE 161
+G+ +Y G G KD + A+ +YS A D +H A+ L ++ +G+G KD+ A LY+
Sbjct: 142 IGDYHYYGYGTKKDYETAATHYSIAADKHHSAQAMFNLAYMYEHGLGIAKDIHLARRLYD 201
Query: 162 KA 163
A
Sbjct: 202 MA 203
Score = 42.0 bits (97), Expect = 0.006
Identities = 23/93 (24%), Positives = 41/93 (43%)
Query: 106 LYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACD 165
+YY+G GV KD K A +Y+ A L ++ G G + R A++LY+ C+
Sbjct: 1 MYYSGSGVWKDYKLAFKYFYLASQSGQPLAIYYLAEMYATGTGVLRSCRTAVELYKGVCE 60
Query: 166 LKDSPGCINAGYIYSVTKNFKEAIVRYSKACEL 198
L Y + ++++Y+ E+
Sbjct: 61 LGHWAEKFLTAYFAYKDGDIDSSLIQYALLAEM 93
>ref|NP_283034.1| (NC_003116) hypothetical protein NMA0184 [Neisseria meningitidis
Z2491]
pir||F82012 hypothetical protein NMA0184 [imported] - Neisseria meningitidis
(group A strain Z2491)
emb|CAB83499.1| (AL162752) hypothetical protein NMA0184 [Neisseria meningitidis
Z2491]
Length = 468
Score = 43.5 bits (101), Expect = 0.002
Identities = 36/164 (21%), Positives = 68/164 (40%), Gaps = 7/164 (4%)
Query: 83 KAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSL 142
+A+++Y + + + L G+ +D +A++Y A + +H E ++G L
Sbjct: 218 EALEWYRRAADKEQAEAQSKLAQYALTGELSERDPFQAARYAKAAAEKDHPEALKIMGDL 277
Query: 143 HHYGVGTPKDLRKALDLYEKACDLKDSPGC---INAGYIYSVTKNFKEAIVRYSKACELK 199
+ YG+G D A D Y +A L + I+ +Y + +++ + A + +
Sbjct: 278 YRYGLGIKADNHIAHDYYHRAAALGSAAAAQKLISDAALYH-PQQYEQI---KTAALQQQ 333
Query: 200 DGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEACDAL 243
Y L Q A G D A +N+ + K A AL
Sbjct: 334 QTETIYRLAEAQACAIGRPADYNAARKNYMEAAGFHHKNAAAAL 377
Score = 41.6 bits (96), Expect = 0.008
Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 10/125 (8%)
Query: 80 DLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVL 139
D++ AI+ Y K L C LG +Y+ G GVS + +A Y A H +L
Sbjct: 148 DVETAIEQYEKAAALGVTAACWQLGQIYFYGTGVSPNHAQAEHYLEPAAQAGHIAAQTLL 207
Query: 140 GSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYSVTKNFKE----AIVRYSKA 195
L + +AL+ Y +A D K+ + Y++T E RY+KA
Sbjct: 208 ADLL-----AAQRKPEALEWYRRAAD-KEQAEAQSKLAQYALTGELSERDPFQAARYAKA 261
Query: 196 CELKD 200
KD
Sbjct: 262 AAEKD 266
>ref|NP_658424.1| (NC_003995) TPR, TPR Domain [Bacillus anthracis A2012] [Bacillus
anthracis str. A2012]
Length = 219
Score = 42.4 bits (98), Expect = 0.005
Identities = 56/206 (27%), Positives = 95/206 (45%), Gaps = 28/206 (13%)
Query: 36 GIESAKKQDFAQAKTHFEKACEL--KNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCE 93
GI+ ++ ++ +A +F +A E K+ G + + V D ++AI FY + E
Sbjct: 8 GIQYMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLD----VLGDSERAILFYKRALE 63
Query: 94 LNDG-----YGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVG 148
L+D YG LGN+YY GQ +AK + +A L A+ +LG + H +G
Sbjct: 64 LDDKSAAAYYG---LGNVYY-GQEQFAEAKAVFEQAMQA-GLQSADVTFMLG-ITHVQLG 117
Query: 149 TPKDLRKALDLYEKACDL--KDSPGCINAGYIYSVTKNFKEAIVRYSKACELKD--GRGC 204
R AL ++A +L D G ++ ++ +EA + K E+ +
Sbjct: 118 ND---RLALPFLQRATELDENDVEAVFQCGLCFARLEHIQEAKPYFEKVLEMDEEHADAY 174
Query: 205 YNLGVMQYNAQGTAKDEKQAVENFKK 230
YNLGV A ++ ++A+ FKK
Sbjct: 175 YNLGV----AYVFEENNEKALALFKK 196
>ref|NP_439767.1| (NC_000907) H. influenzae predicted coding region HI1625
[Haemophilus influenzae Rd]
sp|P44277|YG25_HAEIN Hypothetical protein HI1625
pir||H64038 hypothetical protein HI1625 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC23273.1| (U32835) H. influenzae predicted coding region HI1625 [Haemophilus
influenzae Rd]
Length = 165
Score = 42.4 bits (98), Expect = 0.005
Identities = 27/116 (23%), Positives = 50/116 (42%)
Query: 28 DAKELVNLGIESAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQF 87
D + +NL E A KQ + N LG Y G+G +D +KA +
Sbjct: 33 DDQARMNLAQEFANKQQWIDVFNIMYPMALEGNITAQSNLGMLYNLGRGTVRDYEKAYWW 92
Query: 88 YTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLH 143
+++ E G N LG +Y G V ++ ++A + + + + M+L +++
Sbjct: 93 FSEAAEKGSVKGLNNLGVMYLRGDYVKQNTEQAIKLFERTAQAKDTDAMMMLSNIY 148
Score = 41.6 bits (96), Expect = 0.008
Identities = 25/88 (28%), Positives = 46/88 (51%), Gaps = 1/88 (1%)
Query: 103 LGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEK 162
LG LY G+G +D +KA ++S+A + +G LG ++ G ++ +A+ L+E+
Sbjct: 72 LGMLYNLGRGTVRDYEKAYWWFSEAAEKGSVKGLNNLGVMYLRGDYVKQNTEQAIKLFER 131
Query: 163 ACDLKDSPGCINAGYIYSVTKNFKEAIV 190
KD+ + IY + +N E I+
Sbjct: 132 TAQAKDTDAMMMLSNIYRL-QNQPEKII 158
>ref|NP_253775.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa]
pir||B83011 hypothetical protein PA5088 [imported] - Pseudomonas aeruginosa
(strain PAO1)
gb|AAG08473.1|AE004921_10 (AE004921) hypothetical protein [Pseudomonas aeruginosa]
Length = 293
Score = 42.0 bits (97), Expect = 0.006
Identities = 36/151 (23%), Positives = 55/151 (35%), Gaps = 8/151 (5%)
Query: 69 AFYEEGKGVGKD-----LKKAIQFYTKGCELNDGYGCNLLGNLYYNGQ--GVSKDAKKAS 121
A+Y E + K + + Y+K E + L +LY G GV KD +KA
Sbjct: 45 AWYREAVALAKPDTLRPWDRIVDLYSKAVERGHWKAMHNLASLYRTGWPGGVEKDTQKAL 104
Query: 122 QYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYSV 181
Y K DL +G + ++ G L +KA L + P G +Y
Sbjct: 105 DLYQKMIDLKVPQGFYDMAAMIGNRAGVKNPATDGLTFLDKAASLGNPPALTELGRLYIY 164
Query: 182 TKNFKEAIVRYSKACELKDGRGCYNLGVMQY 212
E ++Y+ C G N + Y
Sbjct: 165 VAGQDELGLKYTN-CAAGQGYAPANYELAMY 194
>ref|NP_531202.1| (NC_003304) conserved hypothetical protein [Agrobacterium tumefaciens
str. C58 (U. Washington)]
gb|AAL41518.1| (AE009019) conserved hypothetical protein [Agrobacterium tumefaciens
str. C58 (U. Washington)]
Length = 1248
Score = 41.6 bits (96), Expect = 0.008
Identities = 34/137 (24%), Positives = 54/137 (38%), Gaps = 2/137 (1%)
Query: 67 LGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSK 126
+ A Y +G+GV D +A ++Y + L NLY GV ++ +A +YY+
Sbjct: 990 IAARYTDGRGVTADRAEAAKWYKMAADRGLAPAQYRLANLYEKANGVERNLVEAKRYYTL 1049
Query: 127 ACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYSVTKNFK 186
A + +A L L D + + KA +L N +Y+ K
Sbjct: 1050 AAEQGNAGAMHNLAVLLASDAAGQPDFATSAQWFIKASELGVRDSQFNLAILYARGSGVK 1109
Query: 187 EAIVRYSK--ACELKDG 201
+ I K A KDG
Sbjct: 1110 QDIEESYKWFAIAAKDG 1126
>ref|NP_253773.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa]
pir||H83010 hypothetical protein PA5086 [imported] - Pseudomonas aeruginosa
(strain PAO1)
gb|AAG08471.1|AE004921_8 (AE004921) hypothetical protein [Pseudomonas aeruginosa]
Length = 213
Score = 41.6 bits (96), Expect = 0.008
Identities = 35/118 (29%), Positives = 49/118 (40%), Gaps = 4/118 (3%)
Query: 76 GVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEG 135
GV KD +KA+ Y K +L+ G +G + N GV A + KA L +
Sbjct: 15 GVEKDTQKALDLYQKMIDLDVPQGFYDMGAMIGNRAGVKNPATDGLTFLDKAASLGNPPA 74
Query: 136 CMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYSVTK-NFKEAIVRY 192
LG + Y V KDL L A +P G Y + + NF +A+V Y
Sbjct: 75 LTELGKFYIY-VAKKKDL--GLAYTHCAASQGYAPASYELGAYYKIVEHNFPKALVYY 129
>ref|NP_353527.1| (NC_003062) AGR_C_883p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
gb|AAK86312.1| (AE007985) AGR_C_883p [Agrobacterium tumefaciens str. C58 (Cereon)]
Length = 1214
Score = 41.6 bits (96), Expect = 0.008
Identities = 34/137 (24%), Positives = 54/137 (38%), Gaps = 2/137 (1%)
Query: 67 LGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVSKDAKKASQYYSK 126
+ A Y +G+GV D +A ++Y + L NLY GV ++ +A +YY+
Sbjct: 956 IAARYTDGRGVTADRAEAAKWYKMAADRGLAPAQYRLANLYEKANGVERNLVEAKRYYTL 1015
Query: 127 ACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYSVTKNFK 186
A + +A L L D + + KA +L N +Y+ K
Sbjct: 1016 AAEQGNAGAMHNLAVLLASDAAGQPDFATSAQWFIKASELGVRDSQFNLAILYARGSGVK 1075
Query: 187 EAIVRYSK--ACELKDG 201
+ I K A KDG
Sbjct: 1076 QDIEESYKWFAIAAKDG 1092
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.318 0.137 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165,730,957
Number of Sequences: 1026957
Number of extensions: 7246348
Number of successful extensions: 15730
Number of sequences better than 1.0e-02: 112
Number of HSP's better than 0.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 14547
Number of HSP's gapped (non-prelim): 531
length of query: 250
length of database: 324,149,939
effective HSP length: 118
effective length of query: 132
effective length of database: 202,969,013
effective search space: 26791909716
effective search space used: 26791909716
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 96 (41.6 bits)