BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644654|ref|NP_206823.1| hypothetical protein
[Helicobacter pylori 26695]
         (190 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_206823.1|  (NC_000915) hypothetical protein [Helicoba...   381  e-105
ref|NP_222741.1|  (NC_000921) putative [Helicobacter pylori ...   350  4e-96
ref|NP_224205.1|  (NC_000921) putative [Helicobacter pylori ...    51  8e-06
ref|NP_208371.1|  (NC_000915) hypothetical protein [Helicoba...    51  8e-06
ref|NP_561942.1|  (NC_003366) conserved hypothetical protein...    42  0.003

>ref|NP_206823.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||E64522 hypothetical protein HP0021 - Helicobacter pylori (strain 26695)
 gb|AAD07094.1| (AE000524) H. pylori predicted coding region HP0021 [Helicobacter
           pylori 26695]
          Length = 190

 Score =  381 bits (978), Expect = e-105
 Identities = 190/190 (100%), Positives = 190/190 (100%)

Query: 1   MKKFLFKQKFCESLPKSFSKTLLALSLGLILLGIFAPFPKVPKQPSVPLMFHFTEHYARF 60
           MKKFLFKQKFCESLPKSFSKTLLALSLGLILLGIFAPFPKVPKQPSVPLMFHFTEHYARF
Sbjct: 1   MKKFLFKQKFCESLPKSFSKTLLALSLGLILLGIFAPFPKVPKQPSVPLMFHFTEHYARF 60

Query: 61  IPTILSVAIPLIQRDAVGLFQVANASIATTLLTHTTKRALNHVTINDQRLGERPYGGNFN 120
           IPTILSVAIPLIQRDAVGLFQVANASIATTLLTHTTKRALNHVTINDQRLGERPYGGNFN
Sbjct: 61  IPTILSVAIPLIQRDAVGLFQVANASIATTLLTHTTKRALNHVTINDQRLGERPYGGNFN 120

Query: 121 MPSGHSSMVGLAVAFLMRRYSFKKYFWLLPLVPLTMLARIYLDMHTIGAVLTGLGVGMLC 180
           MPSGHSSMVGLAVAFLMRRYSFKKYFWLLPLVPLTMLARIYLDMHTIGAVLTGLGVGMLC
Sbjct: 121 MPSGHSSMVGLAVAFLMRRYSFKKYFWLLPLVPLTMLARIYLDMHTIGAVLTGLGVGMLC 180

Query: 181 VSLFTSPKKP 190
           VSLFTSPKKP
Sbjct: 181 VSLFTSPKKP 190



>ref|NP_222741.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||A71985 hypothetical protein jhp0019 - Helicobacter pylori (strain J99)
 gb|AAD05601.1| (AE001441) putative [Helicobacter pylori J99]
          Length = 191

 Score =  350 bits (899), Expect = 4e-96
 Identities = 174/188 (92%), Positives = 176/188 (93%)

Query: 1   MKKFLFKQKFCESLPKSFSKTLLALSLGLILLGIFAPFPKVPKQPSVPLMFHFTEHYARF 60
           MKKFLFKQKFCESLPKSFSKTLLALSLGLILLG+F PFPKVPK  SVPL  HFTEHYARF
Sbjct: 1   MKKFLFKQKFCESLPKSFSKTLLALSLGLILLGVFIPFPKVPKHQSVPLALHFTEHYARF 60

Query: 61  IPTILSVAIPLIQRDAVGLFQVANASIATTLLTHTTKRALNHVTINDQRLGERPYGGNFN 120
           IPTILSVAIPLIQRDAVGLFQVANASIATT LTH TKRALNHVTINDQRLGERPYGGNFN
Sbjct: 61  IPTILSVAIPLIQRDAVGLFQVANASIATTFLTHATKRALNHVTINDQRLGERPYGGNFN 120

Query: 121 MPSGHSSMVGLAVAFLMRRYSFKKYFWLLPLVPLTMLARIYLDMHTIGAVLTGLGVGMLC 180
           MPSGHSSMVGLAVAFLMRRYS KKY WLLPL+PLTMLARIYLDMHTIGAVL GLG GMLC
Sbjct: 121 MPSGHSSMVGLAVAFLMRRYSVKKYLWLLPLIPLTMLARIYLDMHTIGAVLAGLGTGMLC 180

Query: 181 VSLFTSPK 188
           V LFTSPK
Sbjct: 181 VGLFTSPK 188



>ref|NP_224205.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||A71801 hypothetical protein jhp1487 - Helicobacter pylori (strain J99)
 gb|AAD07061.1| (AE001570) putative [Helicobacter pylori J99]
          Length = 198

 Score = 50.8 bits (120), Expect = 8e-06
 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 4/135 (2%)

Query: 59  RFIPTILSVAIPLIQRDAVGLFQVANASIATTLLTHTTKRALNHVTINDQRLG--ERPYG 116
           RF+P  +   + L  RD  GL ++A  ++ T  + +  K A +    +  R+G  +RP  
Sbjct: 38  RFLPIFVGT-VSLAMRDYRGLGELAVGTLVTQGVIYGLKGAFSTAHKDGARVGFAKRPCC 96

Query: 117 GNFN-MPSGHSSMVGLAVAFLMRRYSFKKYFWLLPLVPLTMLARIYLDMHTIGAVLTGLG 175
            ++  MPSGH+     A  F+  RY +K    ++ L  LT  +R+    HTI  V  G  
Sbjct: 97  NSWRGMPSGHAGGAFSAAGFVYYRYGWKPALPVIALAILTDTSRVVAGQHTILQVTIGSL 156

Query: 176 VGMLCVSLFTSPKKP 190
           +      LFTS  KP
Sbjct: 157 IAWGFAYLFTSRYKP 171



>ref|NP_208371.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||D64717 hypothetical protein HP1580 - Helicobacter pylori (strain 26695)
 gb|AAD08625.1| (AE000655) H. pylori predicted coding region HP1580 [Helicobacter
           pylori 26695]
          Length = 220

 Score = 50.8 bits (120), Expect = 8e-06
 Identities = 41/135 (30%), Positives = 65/135 (47%), Gaps = 4/135 (2%)

Query: 59  RFIPTILSVAIPLIQRDAVGLFQVANASIATTLLTHTTKRALNHVTINDQRL--GERPYG 116
           RF+P  +   + L  RD  GL ++A  ++ T  + +  K A ++   +  R+   +RP  
Sbjct: 60  RFLPIFVGT-VSLAMRDYRGLGELAVGTLVTQGVIYGLKGAFSNAHKDGARVEFAKRPCC 118

Query: 117 GNFN-MPSGHSSMVGLAVAFLMRRYSFKKYFWLLPLVPLTMLARIYLDMHTIGAVLTGLG 175
            ++  MPSGH+  V  A  F+  RY +K    ++ L  LT  +R+    HTI  V  G  
Sbjct: 119 NSWRGMPSGHAGGVFSAAGFVYYRYGWKPALPVIALAILTDASRVVARQHTILQVTIGSL 178

Query: 176 VGMLCVSLFTSPKKP 190
           +      LFTS  KP
Sbjct: 179 IAWGFAYLFTSRYKP 193



>ref|NP_561942.1| (NC_003366) conserved hypothetical protein [Clostridium
           perfringens]
 dbj|BAB80732.1| (AP003189) conserved hypothetical protein [Clostridium perfringens]
          Length = 185

 Score = 42.4 bits (98), Expect = 0.003
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 2/98 (2%)

Query: 82  VANASIATTLLTHTTKRALNHVTINDQRLGERPYGGNFNMPSGHSSMVGLAVAFLMRRYS 141
           + N  +   LL H  +R+    T     +   P   +++MPSGH+S    A AF++  Y 
Sbjct: 66  IVNTLLGEGLLKHIIERSRPFATYESLHI-MIPKPSSYSMPSGHTS-ASFAAAFMLAYYF 123

Query: 142 FKKYFWLLPLVPLTMLARIYLDMHTIGAVLTGLGVGML 179
                ++  L  L   +R+YL +H    VLTG  +G L
Sbjct: 124 KNIRVYIYSLASLIAFSRLYLLVHYPSDVLTGALLGYL 161



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.328    0.142    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,158,599
Number of Sequences: 1026957
Number of extensions: 4690206
Number of successful extensions: 13364
Number of sequences better than 1.0e-02: 5
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 13360
Number of HSP's gapped (non-prelim): 5
length of query: 190
length of database: 324,149,939
effective HSP length: 114
effective length of query: 76
effective length of database: 207,076,841
effective search space: 15737839916
effective search space used: 15737839916
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 94 (40.8 bits)