BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644845|ref|NP_207015.1| hypothetical protein
[Helicobacter pylori 26695]
(380 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207015.1| (NC_000915) hypothetical protein [Helicoba... 794 0.0
ref|NP_222924.1| (NC_000921) putative [Helicobacter pylori ... 699 0.0
gb|AAF34142.1| (AF167344) glycosyltransferase [Campylobacte... 254 2e-66
gb|AAG43977.1|AF215659_5 (AF215659) beta-1,4-N-acetylgalact... 254 2e-66
gb|AAF31769.1|AF130984_5 (AF130984) beta-1,4-N-acetylgalact... 253 3e-66
gb|AAK91723.1|AF400048_5 (AF400048) beta-1,4-N-acetylgalact... 252 4e-66
gb|AAK95999.1| (AY044868) putative beta-1,4-N-acetylgalacto... 251 7e-66
gb|AAG37023.1|AF257460_4 (AF257460) beta 1,4-N-acetylgalala... 243 2e-63
ref|NP_282291.1| (NC_002163) acylneuraminate cytidylyltrans... 242 6e-63
gb|AAK12952.1|AF343914_5 (AF343914) unknown [Campylobacter ... 239 5e-62
gb|AAK85422.1|AF400047_11 (AF400047) beta-1,4-N-acetylgalac... 238 1e-61
gb|AAL09371.1|AF305571_4 (AF305571) N-acetylgalactosyltrans... 226 3e-58
gb|AAL05993.1|AF401528_10 (AF401528) beta-1,4-N-acetylgalac... 225 6e-58
>ref|NP_207015.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64547 hypothetical protein HP0217 - Helicobacter pylori (strain 26695)
gb|AAD07286.1| (AE000541) H. pylori predicted coding region HP0217 [Helicobacter
pylori 26695]
Length = 380
Score = 794 bits (2050), Expect = 0.0
Identities = 380/380 (100%), Positives = 380/380 (100%)
Query: 1 MGLKNKIKGFIKERMPFVVRYVRSLKGAKNIYDEINHEIKEMLEAKKLHSLQEKALFNHD 60
MGLKNKIKGFIKERMPFVVRYVRSLKGAKNIYDEINHEIKEMLEAKKLHSLQEKALFNHD
Sbjct: 1 MGLKNKIKGFIKERMPFVVRYVRSLKGAKNIYDEINHEIKEMLEAKKLHSLQEKALFNHD 60
Query: 61 HQESVFLAIASLNNESFIERNKSIYKNSSLNYNYGGGGHLEDRVIHPTLTLPNPTHSGYF 120
HQESVFLAIASLNNESFIERNKSIYKNSSLNYNYGGGGHLEDRVIHPTLTLPNPTHSGYF
Sbjct: 61 HQESVFLAIASLNNESFIERNKSIYKNSSLNYNYGGGGHLEDRVIHPTLTLPNPTHSGYF 120
Query: 121 DYDKKSQNPKSPLNPWAFIRVKNEIVTLEESLFSMLPAIQRGVIGFNDCDDGSKEVILEF 180
DYDKKSQNPKSPLNPWAFIRVKNEIVTLEESLFSMLPAIQRGVIGFNDCDDGSKEVILEF
Sbjct: 121 DYDKKSQNPKSPLNPWAFIRVKNEIVTLEESLFSMLPAIQRGVIGFNDCDDGSKEVILEF 180
Query: 181 CKKFPSFIPISYPYEVMLKDCPSLWHQLYHYSNYTLSFIPKNEWVIKIDGDHVYDAKKLY 240
CKKFPSFIPISYPYEVMLKDCPSLWHQLYHYSNYTLSFIPKNEWVIKIDGDHVYDAKKLY
Sbjct: 181 CKKFPSFIPISYPYEVMLKDCPSLWHQLYHYSNYTLSFIPKNEWVIKIDGDHVYDAKKLY 240
Query: 241 ESFYIPKSIKEVVMYSRINFVVQDFEVFVCNSGDFGFLDAWGDQWLFYNDCEPFEIWQHN 300
ESFYIPKSIKEVVMYSRINFVVQDFEVFVCNSGDFGFLDAWGDQWLFYNDCEPFEIWQHN
Sbjct: 241 ESFYIPKSIKEVVMYSRINFVVQDFEVFVCNSGDFGFLDAWGDQWLFYNDCEPFEIWQHN 300
Query: 301 DDIYEILKLKDKHHIKDKELMQWHFPLAKKRRNAIVDNDLIPLKEFKKHHADLIGTKIEE 360
DDIYEILKLKDKHHIKDKELMQWHFPLAKKRRNAIVDNDLIPLKEFKKHHADLIGTKIEE
Sbjct: 301 DDIYEILKLKDKHHIKDKELMQWHFPLAKKRRNAIVDNDLIPLKEFKKHHADLIGTKIEE 360
Query: 361 SMLDEKRILEMYQKFNLAER 380
SMLDEKRILEMYQKFNLAER
Sbjct: 361 SMLDEKRILEMYQKFNLAER 380
>ref|NP_222924.1| (NC_000921) putative [Helicobacter pylori J99]
pir||H71961 hypothetical protein jhp0203 - Helicobacter pylori (strain J99)
gb|AAD05778.1| (AE001458) putative [Helicobacter pylori J99]
Length = 385
Score = 699 bits (1803), Expect = 0.0
Identities = 335/386 (86%), Positives = 358/386 (91%), Gaps = 11/386 (2%)
Query: 1 MGLKNKIKGFIKERMPFVVRYVRSLKGAKNIYDE---------INHEIKEMLEAKKLHSL 51
MGLKNKIKGF+KERMPFV+R VR LKGAK+ ++ IN EIKEMLEAKKLH L
Sbjct: 1 MGLKNKIKGFVKERMPFVMRCVRGLKGAKDTHENAHDRDAYCGINREIKEMLEAKKLHFL 60
Query: 52 QEKALFNHDHQESVFLAIASLNNESFIERNKSIYKNSSLNYNYGGGGHLEDRVIHPTLTL 111
QEKALFNHDHQESVFLAIASLNNESFIE NKSIYKNSSLNYNYGG HLEDRVIHPTLTL
Sbjct: 61 QEKALFNHDHQESVFLAIASLNNESFIEYNKSIYKNSSLNYNYGG--HLEDRVIHPTLTL 118
Query: 112 PNPTHSGYFDYDKKSQNPKSPLNPWAFIRVKNEIVTLEESLFSMLPAIQRGVIGFNDCDD 171
PNPTHSGYFDYDKKSQNPKSPLNPWAFIRVKNEIVTLEESLFSMLPA+QRGVIGFNDCDD
Sbjct: 119 PNPTHSGYFDYDKKSQNPKSPLNPWAFIRVKNEIVTLEESLFSMLPAVQRGVIGFNDCDD 178
Query: 172 GSKEVILEFCKKFPSFIPISYPYEVMLKDCPSLWHQLYHYSNYTLSFIPKNEWVIKIDGD 231
GSKEV+LEFCKKFPSFIPISYPYEV+LKDCPSLWHQLYHY NYTLSFIPKNEWV+KID D
Sbjct: 179 GSKEVVLEFCKKFPSFIPISYPYEVILKDCPSLWHQLYHYCNYTLSFIPKNEWVVKIDCD 238
Query: 232 HVYDAKKLYESFYIPKSIKEVVMYSRINFVVQDFEVFVCNSGDFGFLDAWGDQWLFYNDC 291
H+YDAKKLY+SFYIPK+IKEVVMYSRINFVV+DFEVFV N GDFGFLDAWGD WL YNDC
Sbjct: 239 HIYDAKKLYKSFYIPKNIKEVVMYSRINFVVRDFEVFVRNDGDFGFLDAWGDHWLLYNDC 298
Query: 292 EPFEIWQHNDDIYEILKLKDKHHIKDKELMQWHFPLAKKRRNAIVDNDLIPLKEFKKHHA 351
EPFEIW++ND+ YE+LKLKDKHHIKDKE++QWHFPLAKKRRNAIV +DLIPL+EFKK HA
Sbjct: 299 EPFEIWRYNDESYEVLKLKDKHHIKDKEMVQWHFPLAKKRRNAIVYDDLIPLEEFKKRHA 358
Query: 352 DLIGTKIEESMLDEKRILEMYQKFNL 377
DLIGT+IEESMLDEKRILE+YQKF L
Sbjct: 359 DLIGTRIEESMLDEKRILEVYQKFRL 384
>gb|AAF34142.1| (AF167344) glycosyltransferase [Campylobacter jejuni]
Length = 347
Score = 254 bits (648), Expect = 2e-66
Identities = 147/358 (41%), Positives = 210/358 (58%), Gaps = 48/358 (13%)
Query: 32 YDEINHEIKEMLEAKKLHSLQEKALFNHDHQESVFLAIASLNNESFIERNKSIYKNSSLN 91
+ +I H+IK+ K + ++ + + + I NNE I+ NK+I +
Sbjct: 17 FRKIRHKIKKTFLLKNI----QRDKIDSYLPKKTLVQINKYNNEDLIKLNKAIIREG--- 69
Query: 92 YNYGGGGHLEDRVIHPTLTLPNPTHSGYFDYDKKSQNPKSPLNPWAFIRVKNEIVTLEES 151
H GYF+YD+KS++PKSPLNPWAFIRVKNE +TL+ S
Sbjct: 70 ------------------------HKGYFNYDEKSKDPKSPLNPWAFIRVKNEAITLKAS 105
Query: 152 LFSMLPAIQRGVIGFNDCDDGSKEVILEFCKKFPSFIPISYPYEVMLKDCPSLWHQLYHY 211
L S+LPAIQRGVIG+NDC DGS+E+ILEFCK++PSFIPI YPYE+ +++ S ++LY Y
Sbjct: 106 LESILPAIQRGVIGYNDCTDGSEEIILEFCKQYPSFIPIKYPYEIQIQNPKSEENKLYSY 165
Query: 212 SNYTLSFIPKNEWVIKIDGDHVYDAKKLYESFYIPKSIKEVVMYSRINFVVQDFEVFVCN 271
NY SFIPK+EW+IKID DH+YDAKKLY+SFYIPK+ +VV YSR++ + F+C
Sbjct: 166 YNYVASFIPKDEWLIKIDVDHIYDAKKLYKSFYIPKNKYDVVSYSRVDIHYFNDNFFLCK 225
Query: 272 SGDFGFLDAWGDQWLFYN-DCEPFEI--------WQ------HNDDIYEILKLKDKHHIK 316
+ L GD L N + + E+ W+ + +I+ + +LK KH I
Sbjct: 226 DNNDNILKEPGDCLLINNYNLKWKEVLIDRINNNWKKATKQSFSSNIHSLEQLKYKHRIL 285
Query: 317 -DKELMQWHFPLAKKRR-NAIVDNDLIPLKEFKKHHADLIGTKIEESMLDEKRILEMY 372
EL +HFP KK R I + I ++EFKK + I KIE SM+ ++ + +++
Sbjct: 286 FHTELNNYHFPFLKKHRAQDIYKYNWISIEEFKKFYLQNINHKIEPSMISKETLKKIF 343
>gb|AAG43977.1|AF215659_5 (AF215659) beta-1,4-N-acetylgalactosaminyltransferase
[Campylobacter jejuni]
Length = 347
Score = 254 bits (648), Expect = 2e-66
Identities = 147/358 (41%), Positives = 210/358 (58%), Gaps = 48/358 (13%)
Query: 32 YDEINHEIKEMLEAKKLHSLQEKALFNHDHQESVFLAIASLNNESFIERNKSIYKNSSLN 91
+ +I H+IK+ K + ++ + + + I NNE I+ NK+I +
Sbjct: 17 FRKIRHKIKKTFLLKNI----QRDKIDSYLPKKTLVQINKYNNEDLIKLNKAIIREG--- 69
Query: 92 YNYGGGGHLEDRVIHPTLTLPNPTHSGYFDYDKKSQNPKSPLNPWAFIRVKNEIVTLEES 151
H GYF+YD+KS++PKSPLNPWAFIRVKNE +TL+ S
Sbjct: 70 ------------------------HKGYFNYDEKSKDPKSPLNPWAFIRVKNEAITLKAS 105
Query: 152 LFSMLPAIQRGVIGFNDCDDGSKEVILEFCKKFPSFIPISYPYEVMLKDCPSLWHQLYHY 211
L S+LPAIQRGVIG+NDC DGS+E+ILEFCK++PSFIPI YPYE+ +++ S ++LY Y
Sbjct: 106 LESILPAIQRGVIGYNDCTDGSEEIILEFCKQYPSFIPIKYPYEIQIQNPKSEENKLYSY 165
Query: 212 SNYTLSFIPKNEWVIKIDGDHVYDAKKLYESFYIPKSIKEVVMYSRINFVVQDFEVFVCN 271
NY SFIPK+EW+IKID DH+YDAKKLY+SFYIPK+ +VV YSR++ + F+C
Sbjct: 166 YNYVASFIPKDEWLIKIDVDHIYDAKKLYKSFYIPKNKYDVVSYSRVDIHYFNDNFFLCK 225
Query: 272 SGDFGFLDAWGDQWLFYN-DCEPFEI--------WQ------HNDDIYEILKLKDKHHIK 316
+ L GD L N + + E+ W+ + +I+ + +LK KH I
Sbjct: 226 DNNGNILKEPGDCLLINNYNLKWKEVLIDRINNNWKKATKQSFSSNIHSLEQLKYKHRIL 285
Query: 317 -DKELMQWHFPLAKKRR-NAIVDNDLIPLKEFKKHHADLIGTKIEESMLDEKRILEMY 372
EL +HFP KK R I + I ++EFKK + I KIE SM+ ++ + +++
Sbjct: 286 FHTELNNYHFPFLKKHRAQDIYKYNWISIEEFKKFYLQNINHKIEPSMISKETLKKIF 343
>gb|AAF31769.1|AF130984_5 (AF130984) beta-1,4-N-acetylgalactosaminyltransferase
[Campylobacter jejuni]
Length = 347
Score = 253 bits (645), Expect = 3e-66
Identities = 149/358 (41%), Positives = 211/358 (58%), Gaps = 48/358 (13%)
Query: 32 YDEINHEIKEMLEAKKLHSLQEKALFNHDHQESVFLAIASLNNESFIERNKSIYKNSSLN 91
+ +I H+IK+ K + ++ + + + I NNE I+ NK+I
Sbjct: 17 FRKIRHKIKKTFLLKNI----QRDKIDSYLPKKTLVQINKYNNEDLIKLNKAII------ 66
Query: 92 YNYGGGGHLEDRVIHPTLTLPNPTHSGYFDYDKKSQNPKSPLNPWAFIRVKNEIVTLEES 151
G GH GYF+YD+KS++PKSPLNPWAFIRVKNE +TL+ S
Sbjct: 67 ----GEGH-----------------KGYFNYDEKSKDPKSPLNPWAFIRVKNEAITLKAS 105
Query: 152 LFSMLPAIQRGVIGFNDCDDGSKEVILEFCKKFPSFIPISYPYEVMLKDCPSLWHQLYHY 211
L S+LPAIQRGVIG+NDC DGS+E+ILEFCK++PSFIPI YPYE+ +++ S ++LY Y
Sbjct: 106 LESILPAIQRGVIGYNDCTDGSEEIILEFCKQYPSFIPIKYPYEIQIQNPKSEENKLYSY 165
Query: 212 SNYTLSFIPKNEWVIKIDGDHVYDAKKLYESFYIPKSIKEVVMYSRINFVVQDFEVFVCN 271
NY SFIPK+EW+IKID DH+YDAKKLY+SFYIPK+ +VV YSR++ + F+C
Sbjct: 166 YNYVASFIPKDEWLIKIDVDHIYDAKKLYKSFYIPKNKYDVVSYSRVDIHYFNDNFFLCK 225
Query: 272 SGDFGFLDAWGDQWLFYN-DCEPFEI--------WQ------HNDDIYEILKLKDKHHIK 316
+ L GD L N + + E+ W+ + +I+ + +LK KH I
Sbjct: 226 DNNGNILKEPGDCLLINNYNLKWKEVLIDRINNNWKKATKQSFSSNIHSLEQLKYKHRIL 285
Query: 317 -DKELMQWHFPLAKKRR-NAIVDNDLIPLKEFKKHHADLIGTKIEESMLDEKRILEMY 372
EL +HFP KK R I + I ++EFKK + I KIE SM+ ++ + +++
Sbjct: 286 FHTELNNYHFPFLKKHRAQDIYKYNWISIEEFKKFYLQNINHKIEPSMISKETLKKIF 343
>gb|AAK91723.1|AF400048_5 (AF400048) beta-1,4-N-acetylgalactosaminyltransferase
[Campylobacter jejuni]
Length = 352
Score = 252 bits (644), Expect = 4e-66
Identities = 146/360 (40%), Positives = 212/360 (58%), Gaps = 50/360 (13%)
Query: 32 YDEINHEIKEMLEAKKLHSLQEKALFNHDHQESVFLAIASLNNESFIERNKSIYKNSSLN 91
+ +I H+IK+ K + ++ + + + I NNE I+ NK+I
Sbjct: 17 FRKIRHKIKKTFLLKNI----QRDKIDSYLPKKTLIQINKYNNEDLIKLNKAII------ 66
Query: 92 YNYGGGGHLEDRVIHPTLTLPNPTHSGYFDYDKKSQNPKSPLNPWAFIRVKNEIVTLEES 151
GGGH GYF+YD+KS++PKSPLNPWAFIRVKNE +TL+ S
Sbjct: 67 ----GGGH-----------------KGYFNYDEKSKDPKSPLNPWAFIRVKNEAITLKAS 105
Query: 152 LFSMLPAIQRGVIGFNDCDDGSKEVILEFCKKFPSFIPISYPYEVMLKDCPSLWHQLYHY 211
L S+LPAIQRGVIG+NDC DGS+E+ILEFCK++PSFIPI YPYE+ +++ S ++LY Y
Sbjct: 106 LESILPAIQRGVIGYNDCTDGSEEIILEFCKQYPSFIPIKYPYEIQIQNPKSEENKLYSY 165
Query: 212 SNYTLSFIPKNEWVIKIDGDHVYDAKKLYESFYIPKSIKEVVMYSRINFVVQDFEVFVCN 271
NY SFIPK+EW+IKID DH YDAKKLY+SFYIP+ V+ YSRI+F+ + + +V
Sbjct: 166 YNYVASFIPKDEWLIKIDVDHYYDAKKLYKSFYIPRKNYHVISYSRIDFIFNEEKFYVYR 225
Query: 272 SGDFGFLDAWGDQWLFYN----------DCEPFEIWQ------HNDDIYEILKLKDKHHI 315
+ + L A GD N + + F+ W N YEILK++++ +
Sbjct: 226 NKEGEILKAPGDCLAIQNTNLFWKEILIEDDTFK-WNTAKNNIENAKSYEILKVRNRIYF 284
Query: 316 KDKELMQWHFPLAKK-RRNAIVDNDLIPLKEFKKHHADLIGTKIEESMLDEKRILEMYQK 374
EL +HFP K R+N + + L +F K++ + + +I+ ML+ K + ++Y+K
Sbjct: 285 -TTELNNYHFPFIKNYRKNDYKQLNWVSLDDFIKNYKEKLKNQIDFKMLEYKTLKKVYKK 343
>gb|AAK95999.1| (AY044868) putative beta-1,4-N-acetylgalactosaminyltransferase
[Campylobacter jejuni]
Length = 347
Score = 251 bits (642), Expect = 7e-66
Identities = 134/274 (48%), Positives = 184/274 (66%), Gaps = 17/274 (6%)
Query: 116 HSGYFDYDKKSQNPKSPLNPWAFIRVKNEIVTLEESLFSMLPAIQRGVIGFNDCDDGSKE 175
H GYF+YD+KS++PKSPLNPWAFIRVKNE +TL+ SL S+LPAIQRGVIG+NDC DGS+E
Sbjct: 70 HKGYFNYDEKSKDPKSPLNPWAFIRVKNEAITLKASLESILPAIQRGVIGYNDCTDGSEE 129
Query: 176 VILEFCKKFPSFIPISYPYEVMLKDCPSLWHQLYHYSNYTLSFIPKNEWVIKIDGDHVYD 235
+ILEFCK++PSFIPI YPYE+ +++ S ++LY Y NY SFIPK+EW+IKID DH+YD
Sbjct: 130 IILEFCKQYPSFIPIKYPYEIQIQNPKSEENKLYSYYNYVASFIPKDEWLIKIDVDHIYD 189
Query: 236 AKKLYESFYIPKSIKEVVMYSRINFVVQDFEVFVCNSGDFGFLDAWGDQWLFYN-DCEPF 294
AKKLY+SFYIPK+ +VV YSR++ + F+C + L GD L N + +
Sbjct: 190 AKKLYKSFYIPKNKYDVVSYSRVDIHYFNDNFFLCKDNNGNILKEPGDCLLINNYNLKWK 249
Query: 295 EI--------WQ------HNDDIYEILKLKDKHHIK-DKELMQWHFPLAKKRR-NAIVDN 338
E+ W+ + +I+ + +LK KH I EL +HFP KK R I
Sbjct: 250 EVLIDRINNNWKKATKQSFSSNIHSLEQLKYKHRILFHTELNNYHFPFLKKHRAQDIYKY 309
Query: 339 DLIPLKEFKKHHADLIGTKIEESMLDEKRILEMY 372
+ I ++EFKK + I KIE SM+ ++ + +++
Sbjct: 310 NWISIEEFKKFYLQNINHKIEPSMISKETLKKIF 343
>gb|AAG37023.1|AF257460_4 (AF257460) beta 1,4-N-acetylgalalactosaminyltransferase/ CMP-NeuNAc
synthetase fusion protein [Campylobacter jejuni]
gb|AAK73186.1| (AY044156) beta-1,4-N-acetylgalactosaminyltransferase/CMP-Neu5Ac
synthetase fusion protein [Campylobacter jejuni]
Length = 536
Score = 243 bits (621), Expect = 2e-63
Identities = 138/282 (48%), Positives = 182/282 (63%), Gaps = 20/282 (7%)
Query: 113 NPTHSGYFDYDKKSQNPKSPLNPWAFIRVKNEIVTLEESLFSMLPAIQRGVIGFNDCDDG 172
N H G+FD+D S++ KSPLNPWAFIRVKNE TL SL SMLPAIQRGVIG+NDC DG
Sbjct: 36 NEKHKGFFDFDPNSKDTKSPLNPWAFIRVKNEATTLRVSLESMLPAIQRGVIGYNDCTDG 95
Query: 173 SKEVILEFCKKFPSFIPISYPYEVMLKDCPSLWHQLYHYSNYTLSFIPKNEWVIKIDGDH 232
S+E+ILEFCK++PSFIP+ YP+EV +++ S ++L+ Y NY SFIP++EW+IKID DH
Sbjct: 96 SEEIILEFCKQYPSFIPVKYPHEVQIENPQSEENKLHSYYNYVASFIPQDEWLIKIDVDH 155
Query: 233 VYDAKKLYESFYIPKSIKEVVMYSRINFVVQDFEVFVCNSGDFGFLDAWGDQWLFYNDCE 292
YDAKKLY+SFY+ S V + RINF++ D ++ + N G+ GF+D GDQ L C
Sbjct: 156 YYDAKKLYKSFYM-ASKNTAVRFPRINFLILD-KIVIQNIGECGFIDG-GDQ-LLIQKCN 211
Query: 293 PFEI---------WQHND----DIYEILKLKDKH-HIKDKELMQWHFPLAKKRRNAIVDN 338
I W + ++Y ++ KH I EL+QWHFP K RN +
Sbjct: 212 SVFIERMVSKQSQWIDPEKTVKELYSEQQIIPKHIKILQAELLQWHFPALKYHRNDYQKH 271
Query: 339 -DLIPLKEFKK-HHADLIGTKIEESMLDEKRILEMYQKFNLA 378
D + L++FKK H+ KI +MLDEK I E+ KF L+
Sbjct: 272 LDALTLEDFKKIHYRHRKIKKINYTMLDEKVIREILDKFKLS 313
>ref|NP_282291.1| (NC_002163) acylneuraminate cytidylyltransferase [Campylobacter
jejuni]
pir||B81319 N-acylneuraminate cytidylyltransferase (EC 2.7.7.43) Cj1143
[imported] - Campylobacter jejuni (strain NCTC 11168)
emb|CAB73398.1| (AL139077) acylneuraminate cytidylyltransferase [Campylobacter
jejuni]
Length = 536
Score = 242 bits (617), Expect = 6e-63
Identities = 137/279 (49%), Positives = 181/279 (64%), Gaps = 20/279 (7%)
Query: 116 HSGYFDYDKKSQNPKSPLNPWAFIRVKNEIVTLEESLFSMLPAIQRGVIGFNDCDDGSKE 175
H G+FD+D S++ KSPLNPWAFIRVKNE TL SL SMLPAIQRGVIG+NDC DGS+E
Sbjct: 39 HKGFFDFDPNSKDTKSPLNPWAFIRVKNEATTLRVSLESMLPAIQRGVIGYNDCTDGSEE 98
Query: 176 VILEFCKKFPSFIPISYPYEVMLKDCPSLWHQLYHYSNYTLSFIPKNEWVIKIDGDHVYD 235
+ILEFCK++PSFIP+ YP+EV +++ S ++L+ Y NY SFIP++EW+IKID DH YD
Sbjct: 99 IILEFCKQYPSFIPVKYPHEVQIENPQSEENKLHSYYNYVASFIPQDEWLIKIDVDHYYD 158
Query: 236 AKKLYESFYIPKSIKEVVMYSRINFVVQDFEVFVCNSGDFGFLDAWGDQWLFYNDCEPFE 295
AKKLY+SFY+ S V + RINF++ D ++ + N G+ GF+D GDQ L C
Sbjct: 159 AKKLYKSFYM-ASKNTAVRFPRINFLILD-KIVIQNIGECGFIDG-GDQ-LLIQKCNSVF 214
Query: 296 I---------WQHND----DIYEILKLKDKH-HIKDKELMQWHFPLAKKRRNAIVDN-DL 340
I W + ++Y ++ KH I EL+QWHFP K RN + D
Sbjct: 215 IERMVSKQSQWIDPEKTVKELYSEQQIIPKHIKILQAELLQWHFPALKYHRNDYQKHLDA 274
Query: 341 IPLKEFKK-HHADLIGTKIEESMLDEKRILEMYQKFNLA 378
+ L++FKK H+ KI +MLDEK I E+ KF L+
Sbjct: 275 LTLEDFKKIHYRHRKIKKINYTMLDEKVIREILDKFKLS 313
>gb|AAK12952.1|AF343914_5 (AF343914) unknown [Campylobacter jejuni]
Length = 300
Score = 239 bits (609), Expect = 5e-62
Identities = 123/269 (45%), Positives = 182/269 (66%), Gaps = 18/269 (6%)
Query: 116 HSGYFDYDKKSQNPKSPLNPWAFIRVKNEIVTLEESLFSMLPAIQRGVIGFNDCDDGSKE 175
H G+FD+D+KS+NP SPLNPWA+IRVKNE +TL+ SL S+LPAIQRG+IG+NDC+DGS+E
Sbjct: 39 HKGFFDFDEKSKNPTSPLNPWAYIRVKNEALTLKASLKSILPAIQRGIIGYNDCNDGSEE 98
Query: 176 VILEFCKKFPSFIPISYPYEVMLKDCPSLWHQLYHYSNYTLSFIPKNEWVIKIDGDHVYD 235
+ILEFCK++PSFIP+ YPYEV +++ S ++LY Y NY SFIP+ EW+IKID DH+YD
Sbjct: 99 IILEFCKQYPSFIPVKYPYEVQIENPQSEENKLYSYYNYVASFIPQGEWLIKIDVDHIYD 158
Query: 236 AKKLYESFYIPKSIKEVVMYSRINFVVQDFEVFVCNSGDFGFL--DAWGDQWLFYNDCEP 293
AK+LY+SFYIPK ++V+YS+++F++ D + F+ + + + D WL N+
Sbjct: 159 AKRLYKSFYIPKKDYDIVVYSKMDFLINDEDAFIVKYKNLNAIINNKSNDHWLIKNNHLK 218
Query: 294 FEIWQHND----DIYEILKLKDKHHIKDKELMQWHFPLAKKR--RNAIVDNDLIPLKEFK 347
+ H D + ++ KLK I E + +HFP K+ +N I +LIP+ +F
Sbjct: 219 WAESMHEDRYCIEYLDVKKLK----IYQTEFLNYHFPYFKRSLDKNKI---ELIPIDDFS 271
Query: 348 -KHHADLIGTKI--EESMLDEKRILEMYQ 373
K + D+I + +E +L K+ ++ Q
Sbjct: 272 IKEYKDIISPDMVTKEKLLYLKKYIKENQ 300
>gb|AAK85422.1|AF400047_11 (AF400047) beta-1,4-N-acetylgalactosaminyltransferase/CMP-Neu5Ac
synthetase fusion protein [Campylobacter jejuni]
Length = 536
Score = 238 bits (606), Expect = 1e-61
Identities = 136/279 (48%), Positives = 180/279 (63%), Gaps = 20/279 (7%)
Query: 116 HSGYFDYDKKSQNPKSPLNPWAFIRVKNEIVTLEESLFSMLPAIQRGVIGFNDCDDGSKE 175
H G+FD+D S++ KSPLNPWAFIRVKNE TL SL SMLPAIQRGVIG+ND DGS+E
Sbjct: 39 HKGFFDFDPNSKDTKSPLNPWAFIRVKNEATTLRVSLESMLPAIQRGVIGYNDYTDGSEE 98
Query: 176 VILEFCKKFPSFIPISYPYEVMLKDCPSLWHQLYHYSNYTLSFIPKNEWVIKIDGDHVYD 235
+ILEFCK++PSFIP+ YP+EV +++ S ++L+ Y NY SFIP++EW+IKID DH YD
Sbjct: 99 IILEFCKQYPSFIPVKYPHEVQIENPQSEENKLHSYYNYVASFIPQDEWLIKIDVDHYYD 158
Query: 236 AKKLYESFYIPKSIKEVVMYSRINFVVQDFEVFVCNSGDFGFLDAWGDQWLFYNDCEPFE 295
AKKLY+SFY+ S V + RINF++ D ++ + N G+ GF+D GDQ L C
Sbjct: 159 AKKLYKSFYM-ASKNTAVRFPRINFLILD-KIVIQNIGECGFIDG-GDQ-LLIQKCNSVF 214
Query: 296 I---------WQHND----DIYEILKLKDKH-HIKDKELMQWHFPLAKKRRNAIVDN-DL 340
I W + ++Y ++ KH I EL+QWHFP K RN + D
Sbjct: 215 IERMVSKQSQWIDPEKTVKELYSEQQIIPKHIKILQAELLQWHFPALKYHRNDYQKHLDA 274
Query: 341 IPLKEFKK-HHADLIGTKIEESMLDEKRILEMYQKFNLA 378
+ L++FKK H+ KI +MLDEK I E+ KF L+
Sbjct: 275 LTLEDFKKIHYRHRKIKKINYTMLDEKVIREILDKFKLS 313
>gb|AAL09371.1|AF305571_4 (AF305571) N-acetylgalactosyltransferase [Campylobacter jejuni]
Length = 315
Score = 226 bits (577), Expect = 3e-58
Identities = 133/319 (41%), Positives = 181/319 (56%), Gaps = 43/319 (13%)
Query: 72 LNNESFIERNKSIYKNSSLNYNYGGGGHLEDRVIHPTLTLPNPTHSGYFDYDKKSQNPKS 131
L+NE FI+ NK+IY H G+FD+D+K+++ KS
Sbjct: 20 LDNEHFIKENKNIYGKK---------------------------HKGFFDFDEKAKDVKS 52
Query: 132 PLNPWAFIRVKNEIVTLEESLFSMLPAIQRGVIGFNDCDDGSKEVILEFCKKFPSFIPIS 191
PLNPW FIRVKNE +TL SL S+LPA+QRG+I +NDCDDGS+E+ILEFCK+FP+FI
Sbjct: 53 PLNPWGFIRVKNEALTLRVSLESILPALQRGIIAYNDCDDGSEELILEFCKQFPNFIAKK 112
Query: 192 YPYEVMLKDCPSLWHQLYHYSNYTLSFIPKNEWVIKIDGDHVYDAKKLYESFYIPKSIKE 251
YPY+V L++ + ++LY Y N+ SFIP +EW IKID DH YDAKKLY+SFY +
Sbjct: 113 YPYKVDLENPKNEENKLYSYYNWAASFIPLDEWFIKIDVDHYYDAKKLYKSFYRIDQENK 172
Query: 252 VVMYSRINFVVQDFEVFVCNSGDFGFLDAWGDQWLFYNDCEPF--------EIWQHNDDI 303
+ Y RINF++ + ++V NSG++GF+ GDQ L F W +
Sbjct: 173 ALCYPRINFIILNGNIYVQNSGNYGFIGG-GDQLLIKRRNSSFIERRVSKKSQWIDPKGL 231
Query: 304 YEIL-----KLKDKHHIKDKELMQWHFPLAKKRRNAIVDN-DLIPLKEFKK-HHADLIGT 356
E L L I L+QWHFP K RRN D++ L+EF+ H
Sbjct: 232 IEELYSEQQVLSQGVKILQAPLLQWHFPALKYRRNDYQQYLDILSLEEFQAFHRKSKEAK 291
Query: 357 KIEESMLDEKRILEMYQKF 375
KI+ +ML I ++ +KF
Sbjct: 292 KIDFAMLKRPVIEQILKKF 310
>gb|AAL05993.1|AF401528_10 (AF401528) beta-1,4-N-acetylgalactosaminyltransferase
[Campylobacter jejuni]
gb|AAL06007.1|AF401529_10 (AF401529) beta-1,4-N-acetylgalactosaminyltransferase
[Campylobacter jejuni]
Length = 315
Score = 225 bits (574), Expect = 6e-58
Identities = 132/319 (41%), Positives = 181/319 (56%), Gaps = 43/319 (13%)
Query: 72 LNNESFIERNKSIYKNSSLNYNYGGGGHLEDRVIHPTLTLPNPTHSGYFDYDKKSQNPKS 131
L+NE FI+ NK+IY H G+FD+D+K+++ KS
Sbjct: 20 LDNEHFIKENKNIYGKK---------------------------HKGFFDFDEKAKDVKS 52
Query: 132 PLNPWAFIRVKNEIVTLEESLFSMLPAIQRGVIGFNDCDDGSKEVILEFCKKFPSFIPIS 191
PLNPW FIRVKNE +TL SL S+LPA+QRG+I +NDCDDGS+E+ILEFCK++P+FI
Sbjct: 53 PLNPWGFIRVKNEALTLRVSLESILPALQRGIIAYNDCDDGSEELILEFCKQYPNFIAKK 112
Query: 192 YPYEVMLKDCPSLWHQLYHYSNYTLSFIPKNEWVIKIDGDHVYDAKKLYESFYIPKSIKE 251
YPY+V L++ + ++LY Y N+ SFIP +EW IKID DH YDAKKLY+SFY +
Sbjct: 113 YPYKVDLENPKNEENKLYSYYNWAASFIPLDEWFIKIDVDHYYDAKKLYKSFYRIDQENK 172
Query: 252 VVMYSRINFVVQDFEVFVCNSGDFGFLDAWGDQWLFYNDCEPF--------EIWQHNDDI 303
+ Y RINF++ + ++V NSG++GF+ GDQ L F W +
Sbjct: 173 ALCYPRINFIILNGNIYVQNSGNYGFIGG-GDQLLIKRRNSSFIERRVSKKSQWIDPKGL 231
Query: 304 YEIL-----KLKDKHHIKDKELMQWHFPLAKKRRNAIVDN-DLIPLKEFKK-HHADLIGT 356
E L L I L+QWHFP K RRN D++ L+EF+ H
Sbjct: 232 IEELYSEQQVLSQGVKILQAPLLQWHFPALKYRRNDYQQYLDILSLEEFQAFHRKSKEAK 291
Query: 357 KIEESMLDEKRILEMYQKF 375
KI+ +ML I ++ +KF
Sbjct: 292 KIDFAMLKRPVIEQILKKF 310
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.321 0.140 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 261,286,297
Number of Sequences: 1026957
Number of extensions: 11830195
Number of successful extensions: 29267
Number of sequences better than 1.0e-02: 13
Number of HSP's better than 0.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29233
Number of HSP's gapped (non-prelim): 13
length of query: 380
length of database: 324,149,939
effective HSP length: 123
effective length of query: 257
effective length of database: 197,834,228
effective search space: 50843396596
effective search space used: 50843396596
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 98 (42.4 bits)