BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644846|ref|NP_207016.1| hypothetical protein
[Helicobacter pylori 26695]
(183 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207016.1| (NC_000915) hypothetical protein [Helicoba... 377 e-104
ref|NP_222925.1| (NC_000921) putative [Helicobacter pylori ... 360 3e-99
gb|AAL00945.1|AF401663_2 (AF401663) putative phosphatidylet... 86 3e-16
ref|NP_349988.1| (NC_003030) Uncharacterized conserved prot... 85 3e-16
ref|NP_246409.1| (NC_002663) unknown [Pasteurella multocida... 83 1e-15
ref|NP_391766.1| (NC_000964) similar to hypothetical protei... 82 4e-15
ref|NP_645679.1| (NC_003923) conserved hypothetical protein... 76 2e-13
ref|NP_371504.1| (NC_002758) conserved hypothetical protein... 73 2e-12
ref|NP_078174.1| (NC_002162) conserved hypothetical [Ureapl... 68 6e-11
ref|NP_376360.1| (NC_003106) 149aa long conserved hypotheti... 60 9e-09
ref|NP_635577.1| (NC_003902) conserved hypothetical protein... 60 1e-08
ref|NP_356451.1| (NC_003063) AGR_L_1304p [Agrobacterium tum... 59 3e-08
ref|NP_640556.1| (NC_003919) conserved hypothetical protein... 58 4e-08
ref|NP_342274.1| (NC_002754) Conserved hypothetical protein... 55 3e-07
ref|NP_616367.1| (NC_003552) hypothetical protein (multi-do... 54 6e-07
ref|NP_628200.1| (NC_003888) conserved hypothetical protein... 51 5e-06
ref|NP_634424.1| (NC_003901) hypothetical protein [Methanos... 50 1e-05
ref|NP_661500.1| (NC_002932) conserved hypothetical protein... 50 2e-05
ref|NP_213857.1| (NC_000918) hypothetical protein [Aquifex ... 49 2e-05
ref|NP_275416.1| (NC_000916) conserved protein [Methanother... 49 2e-05
ref|NP_600739.1| (NC_003450) COG1881:Phospholipid-binding p... 49 3e-05
ref|NP_216656.1| (NC_000962) hypothetical protein Rv2140c [... 47 1e-04
ref|NP_301926.1| (NC_002677) conserved hypothetical protein... 45 4e-04
ref|NP_299449.1| (NC_002488) conserved hypothetical protein... 45 5e-04
ref|NP_459770.1| (NC_003197) putative Phospholipid-binding ... 45 5e-04
ref|NP_521585.1| (NC_003296) CONSERVED HYPOTHETICAL PROTEIN... 45 5e-04
ref|NP_455334.1| (NC_003198) conserved hypothetical protein... 44 7e-04
ref|NP_126834.1| (NC_000868) hypothetical protein [Pyrococc... 44 7e-04
gb|AAG60561.1|AF250769_2 (AF250769) unknown [uncultured bac... 44 9e-04
gb|AAG60577.1|AF250776_1 (AF250776) hypothetical 17.1 kDa p... 44 9e-04
gb|AAA23513.1| (J04423) ORF 1 [Escherichia coli] 44 9e-04
ref|NP_415294.1| (NC_000913) orf, hypothetical protein [Esc... 44 9e-04
ref|NP_225072.1| (NC_000922) YbcL family-CT736 hypothetical... 44 0.001
ref|NP_286536.1| (NC_002655) orf, hypothetical protein [Esc... 44 0.001
ref|NP_143160.1| (NC_000961) hypothetical protein [Pyrococc... 44 0.001
pdb|1FJJ|A Chain A, Crystal Structure Of E.Coli Ybhb Protei... 43 0.001
ref|NP_626064.1| (NC_003888) conserved hypothetical protein... 42 0.003
ref|NP_336420.1| (NC_002755) phosphatidylethanolamine-bindi... 40 0.010
ref|NP_216427.1| (NC_000962) lppC [Mycobacterium tuberculos... 40 0.010
>ref|NP_207016.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||B64547 hypothetical protein HP0218 - Helicobacter pylori (strain 26695)
gb|AAD07287.1| (AE000541) H. pylori predicted coding region HP0218 [Helicobacter
pylori 26695]
Length = 183
Score = 377 bits (967), Expect = e-104
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MKTFEVMIQTDSKGYLDAKFGGNAPKAFLNSNGLPTYSPKISWQKVEGAQSYALELIDHD 60
MKTFEVMIQTDSKGYLDAKFGGNAPKAFLNSNGLPTYSPKISWQKVEGAQSYALELIDHD
Sbjct: 1 MKTFEVMIQTDSKGYLDAKFGGNAPKAFLNSNGLPTYSPKISWQKVEGAQSYALELIDHD 60
Query: 61 AQKVCGMPFVHWVVGNIAHNVLEENASMMDKRIVQGVNSLTQGFIRSPLNESEKQRSNLN 120
AQKVCGMPFVHWVVGNIAHNVLEENASMMDKRIVQGVNSLTQGFIRSPLNESEKQRSNLN
Sbjct: 61 AQKVCGMPFVHWVVGNIAHNVLEENASMMDKRIVQGVNSLTQGFIRSPLNESEKQRSNLN 120
Query: 121 NSVYIGPMPPNGDHHYLIQVYALDIPKLALKAPFFLGDLHDKMRNHIIAIGRKEFLYKQF 180
NSVYIGPMPPNGDHHYLIQVYALDIPKLALKAPFFLGDLHDKMRNHIIAIGRKEFLYKQF
Sbjct: 121 NSVYIGPMPPNGDHHYLIQVYALDIPKLALKAPFFLGDLHDKMRNHIIAIGRKEFLYKQF 180
Query: 181 VRK 183
VRK
Sbjct: 181 VRK 183
>ref|NP_222925.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71962 hypothetical protein jhp0204 - Helicobacter pylori (strain J99)
gb|AAD05779.1| (AE001458) putative [Helicobacter pylori J99]
Length = 183
Score = 360 bits (925), Expect = 3e-99
Identities = 174/183 (95%), Positives = 179/183 (97%)
Query: 1 MKTFEVMIQTDSKGYLDAKFGGNAPKAFLNSNGLPTYSPKISWQKVEGAQSYALELIDHD 60
MKTFEVMIQTDS+GYLDAKFGGNAP+ FLN NGLPTYSPKISWQKVEGA+SYALELIDHD
Sbjct: 1 MKTFEVMIQTDSQGYLDAKFGGNAPRGFLNPNGLPTYSPKISWQKVEGAKSYALELIDHD 60
Query: 61 AQKVCGMPFVHWVVGNIAHNVLEENASMMDKRIVQGVNSLTQGFIRSPLNESEKQRSNLN 120
AQKVCGMPFVHWVVGNI++NVLEENASMMDKRIVQGVNSLTQGFIRS LNESEKQRSNLN
Sbjct: 61 AQKVCGMPFVHWVVGNISYNVLEENASMMDKRIVQGVNSLTQGFIRSSLNESEKQRSNLN 120
Query: 121 NSVYIGPMPPNGDHHYLIQVYALDIPKLALKAPFFLGDLHDKMRNHIIAIGRKEFLYKQF 180
NSVYIGPMPPNGDHHYLIQVYALDIPKL LKAPFFLGDLHDKMRNHIIAIGRKEFLYKQF
Sbjct: 121 NSVYIGPMPPNGDHHYLIQVYALDIPKLELKAPFFLGDLHDKMRNHIIAIGRKEFLYKQF 180
Query: 181 VRK 183
VRK
Sbjct: 181 VRK 183
>gb|AAL00945.1|AF401663_2 (AF401663) putative phosphatidylethanolamine-binding protein
[Lactobacillus sakei]
Length = 170
Score = 85.5 bits (210), Expect = 3e-16
Identities = 59/169 (34%), Positives = 85/169 (49%), Gaps = 13/169 (7%)
Query: 14 GYLDAKFGGNAPKAFLNSNGLPTYS-PKISWQKVEGAQSYALELIDHDAQKVC-GMPFVH 71
GY D +GG + LN G+PTYS P I Q +YA D DA +V G P++H
Sbjct: 11 GYFDDIYGGYSDA--LNEIGMPTYSIPFIIEQAPADTVTYAAIFYDLDAYEVTKGFPWIH 68
Query: 72 WVVGNIAHNVLEENASMMDKRIVQGVNSLTQGFIRSPLNESEKQRSNLNNSVYIGPMPPN 131
W + N+ + N+S VQGVN+ SP+ +++ + ++ Y G PPN
Sbjct: 69 WTLANLKATTVLANSSQQSPAFVQGVNTW-----HSPMTDNQAAEA---SACYGGMTPPN 120
Query: 132 GDHHYLIQVYALDIPKLALKAPFFLGDLHDKMRNHIIAIGRKEFLYKQF 180
DH Y + V+ALD L L+ F+L L M+ HI+ E Y+QF
Sbjct: 121 RDHTYTLTVFALDC-SLDLEDGFYLNQLTTAMKGHILDKAVLEAKYRQF 168
>ref|NP_349988.1| (NC_003030) Uncharacterized conserved protein, YbhB family
[Clostridium acetobutylicum]
gb|AAK81328.1|AE007837_6 (AE007837) Uncharacterized conserved protein, YbhB family
[Clostridium acetobutylicum]
Length = 165
Score = 85.1 bits (209), Expect = 3e-16
Identities = 55/156 (35%), Positives = 80/156 (51%), Gaps = 13/156 (8%)
Query: 14 GYLDAKFGGNAPKAFLNSNGLPTYSPKISWQKV-EGAQSYALELIDHDAQKVCGMPFVHW 72
G + K+G + N G+PTYS + + + SYAL L D DA V G ++HW
Sbjct: 11 GVIQNKYGKRGEQ--FNEVGIPTYSLPVKIKNAPDKTVSYALVLEDKDAVPVVGFSWIHW 68
Query: 73 VVGNIAHNVLEENASMMDKRIVQGVNSLTQGFIRSPLNESEKQRSNLNNSVYIGPMPPNG 132
+ NI L EN S+ K VQG+NS SP+ ++++ Y G PPN
Sbjct: 69 LASNITKEELNENESISAKDFVQGINSWC-----SPIGNTDRKFC----IGYGGMTPPNA 119
Query: 133 DHHYLIQVYALDIPKLALKAPFFLGDLHDKMRNHII 168
H Y + V+ALD+ KL LK F++ +L+ M HI+
Sbjct: 120 PHIYELHVFALDV-KLNLKDGFYMNELYKAMEGHIL 154
>ref|NP_246409.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK03554.1| (AE006183) unknown [Pasteurella multocida]
Length = 170
Score = 83.2 bits (204), Expect = 1e-15
Identities = 59/168 (35%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 5 EVMIQTDS---KGYLDAKFGGNAPKAFLNSNGLPTYSPKISWQKVE-GAQSYALELIDHD 60
EVM T S G + K+G + + NG+PTYS +V G +S+A+ L D D
Sbjct: 4 EVMKVTSSAIKNGAFEDKYGKRGKQ--FSPNGMPTYSIPFDISEVPVGTKSFAVVLEDKD 61
Query: 61 AQKVCGMPFVHWVVGNIAHNVLEENASMMDKRIVQGVNSLTQGFIRSPLNESEKQRSNLN 120
A G ++HW++ N+ ++EN S+ VQG NS + + E+
Sbjct: 62 AITASGFVWIHWLIANLERTSVQENESLTATDYVQGANSWASVLGKFDIAEA-------- 113
Query: 121 NSVYIGPMPPNGDHHYLIQVYALDIPKLALKAPFFLGDLHDKMRNHII 168
S Y G PPN H Y + VYALD KL L A F DLH M+ HI+
Sbjct: 114 -SFYGGMAPPNSLHRYELIVYALDC-KLDLSAGFRFNDLHFAMQGHIL 159
>ref|NP_391766.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
sp|P55185|YXKA_BACSU Hypothetical protein yxkA
pir||E70080 conserved hypothetical protein yxkA - Bacillus subtilis
dbj|BAA11717.1| (D83026) hypothetical [Bacillus subtilis]
emb|CAB15913.1| (Z99123) similar to hypothetical proteins [Bacillus subtilis]
Length = 168
Score = 81.6 bits (200), Expect = 4e-15
Identities = 59/166 (35%), Positives = 85/166 (50%), Gaps = 14/166 (8%)
Query: 8 IQTDSKGYLDAKFGGNAPKAFLNSNGLPTYSPKISWQKV-EGAQSYALELIDHDAQKVCG 66
I ++ YL K+ A + + G P S I + + GA++ AL IDHDA VCG
Sbjct: 3 IYVEANPYLHDKYSKYADEKY-KREGNPFVSFPIHFDDIPSGAKTLALTFIDHDAIPVCG 61
Query: 67 MPFVHWVVGNIAHNV--LEENAS-MMDKRIVQGVNSLTQGFIRSPLNESEKQRSNLNNSV 123
++HW NI + L E+AS ++QG NS SPL S +
Sbjct: 62 FSWIHWTAANIPAYIGELPEHASEERQDLMIQGQNSFA-----SPLAGSNDPKV---IHQ 113
Query: 124 YIGPMPPNGDHHYLIQVYALDIPKLALKAPFFLGDLHDKMRNHIIA 169
Y GP PP+ DH Y + VYALD +L L+ F+L +L+ +M+ HI+A
Sbjct: 114 YCGPTPPDKDHAYTLTVYALD-AELNLQPGFYLNELYQEMKEHILA 158
>ref|NP_645679.1| (NC_003923) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB94727.1| (AP004825) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 171
Score = 75.9 bits (185), Expect = 2e-13
Identities = 49/137 (35%), Positives = 68/137 (48%), Gaps = 19/137 (13%)
Query: 47 EGAQSYALELIDHDAQKVCGMPFVHWVVGNIAHN----VLEENASMMDKRIVQGVNSLTQ 102
EG + A LID+DA VCG ++HW V N++ + ++ + S VQG NS T
Sbjct: 43 EGTKYLAWSLIDYDAIPVCGFAWIHWSVANVSVSGNSISIKADLSRTKGDYVQGKNSFTS 102
Query: 103 GFIRSPLNESEKQRSNLNNSVYIGPMPPNGDHHYLIQVYALDIPKLALKAPFFLGDLHDK 162
G + +E E Y+GP PP+ DH Y + VYALD L LK F+L + +
Sbjct: 103 GLLAEDFSEIENH--------YVGPTPPDQDHQYELTVYALD-HSLNLKNGFYLNEFLKE 153
Query: 163 MRNH------IIAIGRK 173
+ H I IGRK
Sbjct: 154 VNQHKIDQTSINLIGRK 170
>ref|NP_371504.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_374102.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB42080.1| (AP003132) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB57142.1| (AP003360) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
Length = 171
Score = 72.8 bits (177), Expect = 2e-12
Identities = 50/155 (32%), Positives = 76/155 (48%), Gaps = 20/155 (12%)
Query: 29 LNSNGLPTYSPKISWQKVEGAQSYALELIDHDAQKVCGMPFVHWVVGNIAHN----VLEE 84
+N N + ++ +I+ + + + A LID+DA VCG ++HW V N++ ++
Sbjct: 26 INGNPIKSFPFEIT-ELPKDTKYLAWSLIDYDAIPVCGFAWIHWSVANVSITGDSISIKA 84
Query: 85 NASMMDKRIVQGVNSLTQGFIRSPLNESEKQRSNLNNSVYIGPMPPNGDHHYLIQVYALD 144
+ S VQG NS T G + +E E Y+GP PP+ DH Y + VYALD
Sbjct: 85 DLSRTKGDYVQGKNSFTSGLLAEDFSEIENH--------YVGPTPPDKDHQYELTVYALD 136
Query: 145 IPKLALKAPFFLGDLHDKMRNH------IIAIGRK 173
L LK F+L + ++ H I IGRK
Sbjct: 137 -HSLNLKNGFYLNEFLKEVNQHKIDQTSINLIGRK 170
>ref|NP_078174.1| (NC_002162) conserved hypothetical [Ureaplasma urealyticum]
pir||A82903 conserved hypothetical UU340 [imported] - Ureaplasma urealyticum
gb|AAF30749.1|AE002131_3 (AE002131) conserved hypothetical [Ureaplasma urealyticum]
Length = 388
Score = 67.8 bits (164), Expect = 6e-11
Identities = 46/112 (41%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 33 GLPTYSPKISWQKVEGAQSYALELIDHDAQKVCGMPFVHWVVGNIAHNVLEEN-ASMMDK 91
GL SP+I W V SYA+ +ID++A V G PFVHW NI L N A++
Sbjct: 55 GLNNISPQIRWSPVLETASYAVAIIDYEA--VGGAPFVHWYALNIFEPELALNVANLGYA 112
Query: 92 RIVQGVNSLTQGFIRSPLNESEKQRSNLNNSVYIGPMPPNGDHHYLIQVYAL 143
+ QG NS ++ F S L ++ Q NN Y P PPN H Y I+VYA+
Sbjct: 113 NLYQGENSTSKHFSHSIL-DANYQTDIANN--YFPPCPPNKSHKYEIKVYAV 161
>ref|NP_376360.1| (NC_003106) 149aa long conserved hypothetical protein [Sulfolobus
tokodaii]
dbj|BAB65469.1| (AP000982) 149aa long conserved hypothetical protein [Sulfolobus
tokodaii]
Length = 149
Score = 60.5 bits (145), Expect = 9e-09
Identities = 50/157 (31%), Positives = 70/157 (43%), Gaps = 35/157 (22%)
Query: 27 AFLNSNGLPT--------YSPKISWQKVEGAQSYALELIDHDAQKVCGMPFVHWVVGNIA 78
AF N + +P SP+I W KV+ A+SYAL + D DA G F+HW++ NI
Sbjct: 7 AFKNEDFIPVRYTCDGEDISPEIEWDKVQNAKSYALIVEDPDAP---GGIFIHWIIYNIK 63
Query: 79 HNVLEENASMMDKRI--VQGVNSLTQGFIRSPLNESEKQRSNLNNSVYIGPMPP--NGDH 134
L EN ++K +QG N + Y GP PP + H
Sbjct: 64 GTKLPENIKKVEKTEFGIQGEN-------------------DFGKIGYGGPCPPRTHPPH 104
Query: 135 HYLIQVYALDIPKLALKAPFFLGDLHDKMRNHIIAIG 171
Y VYALD +L ++ +L + M+ HII G
Sbjct: 105 RYYFYVYALD-TELPERSRITADELKNLMKGHIIDQG 140
>ref|NP_635577.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM39501.1| (AE012114) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 203
Score = 60.1 bits (144), Expect = 1e-08
Identities = 52/187 (27%), Positives = 75/187 (39%), Gaps = 45/187 (24%)
Query: 16 LDAKFGGNAPKAFLNSNGLPTYSPKISWQKV-EGAQSYALELIDHDAQKV---------- 64
+ +F P+ F P +P ++W +V EG + +AL +D D V
Sbjct: 14 IPTEFAAGTPEGFA-----PNRNPHLAWSEVPEGTRGFALLCLDPDVPSVPETVGRDDVQ 68
Query: 65 --CGMP---FVHWVVGNIAHNVLEENASMMDKRIV--------------QGVNSLTQGFI 105
P FVHW + +I +V E A V QG+NS TQ F
Sbjct: 69 IPVDQPRTDFVHWAMADIPASVREIAAGSCSDGFVAKGKQQPAGPAGARQGLNSYTQWFA 128
Query: 106 RSPLNESEKQRSNLNNSVYIGPMPPNGD---HHYLIQVYALDIPKLALKAPFFLGDLHDK 162
+P N Y GP PP D H Y +V+ALD+ +L L F D+
Sbjct: 129 GNPDMAG-------NYLGYDGPYPPFNDLRMHRYFFRVFALDVAQLELPTLFTAADVLSA 181
Query: 163 MRNHIIA 169
M+ H++A
Sbjct: 182 MQGHVLA 188
>ref|NP_356451.1| (NC_003063) AGR_L_1304p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_534681.1| (NC_003305) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK89236.1| (AE008264) AGR_L_1304p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL44997.1| (AE009350) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 236
Score = 58.9 bits (141), Expect = 3e-08
Identities = 48/166 (28%), Positives = 68/166 (40%), Gaps = 29/166 (17%)
Query: 33 GLPTYSPKISWQK-VEGAQSYALELIDHDAQKVCGM---------------PFVHWVVGN 76
G SP +SW EG +SYAL +ID D + + HWV+ +
Sbjct: 54 GSKDVSPGVSWSAGPEGTRSYALLMIDPDVPQDFSLINKPGTTIPAEAPRISVFHWVLAD 113
Query: 77 IAHNVLEENASMMDKRIVQGVNSLTQGFIRSPLNESEKQRSNLNNSV--------YIGPM 128
I ++ + +V G + G L + S L + Y GP
Sbjct: 114 IPAGIMSIGEGAESEGLVPGGKPV--GVTPHGLRGANVYTSFLAKTDGMAGTYGGYDGPC 171
Query: 129 PPNGD---HHYLIQVYALDIPKLALKAPFFLGDLHDKMRNHIIAIG 171
PP D HHY ++V+ALD+P L L PF D+ M HI+A G
Sbjct: 172 PPINDQRIHHYTLKVFALDVPTLGLSGPFTGEDVKKSMAGHILASG 217
>ref|NP_640556.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM35092.1| (AE011645) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 203
Score = 58.2 bits (139), Expect = 4e-08
Identities = 50/184 (27%), Positives = 73/184 (39%), Gaps = 45/184 (24%)
Query: 19 KFGGNAPKAFLNSNGLPTYSPKISWQKVE-GAQSYALELIDHDAQKVCGM---------- 67
+F P+ F P +P ++W + G QS+AL +D D V
Sbjct: 17 EFAAGTPEGFA-----PNRNPHLAWSETPAGTQSFALLCLDPDVPTVPDTVGRDDLQIPV 71
Query: 68 -----PFVHWVVGNIAHNVLEENASMMDKRIV--------------QGVNSLTQGFIRSP 108
FVHW + +I +V E A V QG+NS TQ F +
Sbjct: 72 EQPRTDFVHWAMADIPADVHEIAAGSCSDGFVVKGKQQPAGPAGARQGLNSYTQWFAGNA 131
Query: 109 LNESEKQRSNLNNSVYIGPMPPNGD---HHYLIQVYALDIPKLALKAPFFLGDLHDKMRN 165
+ + Y GP PP D H Y +V+ALD+ KL L + F D+ M+
Sbjct: 132 DMAGDYRG-------YDGPYPPFNDLRVHRYFFRVFALDVAKLGLPSSFTAADVLSAMQG 184
Query: 166 HIIA 169
H++A
Sbjct: 185 HVLA 188
>ref|NP_342274.1| (NC_002754) Conserved hypothetical protein [Sulfolobus
solfataricus]
emb|CAB57536.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
gb|AAK41064.1| (AE006700) Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 157
Score = 55.5 bits (132), Expect = 3e-07
Identities = 41/118 (34%), Positives = 53/118 (44%), Gaps = 26/118 (22%)
Query: 38 SPKISWQKVEGAQSYALELIDHDAQKVCGMPFVHWVVGNIAHNVLEENASMMDKRI--VQ 95
SP++ W V A+SYA+ + D DA G F+HWV+ NI N L E + K VQ
Sbjct: 34 SPELEWDLVTNAKSYAIIVEDPDAP---GGTFIHWVIYNITTNRLPEGVPRLYKSQYGVQ 90
Query: 96 GVNSLTQGFIRSPLNESEKQRSNLNNSVYIGPMPP--NGDHHYLIQVYALDIPKLALK 151
GVN + N Y GP PP + H Y VYA+D L +K
Sbjct: 91 GVN-------------------DFGNIGYNGPCPPKTHPPHRYYFYVYAIDTILLEIK 129
>ref|NP_616367.1| (NC_003552) hypothetical protein (multi-domain) [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM04847.1| (AE010813) hypothetical protein (multi-domain) [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 203
Score = 54.3 bits (129), Expect = 6e-07
Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 26/125 (20%)
Query: 47 EGAQSYALELIDHDAQKVCGMPFVHWVVGNIAHNVLEENASMMDKRIVQGVNSLTQGFIR 106
EG +S L + D DA PF HW+V NI E + +++ + G+ +
Sbjct: 96 EGTESLVLIMDDPDAPM---NPFTHWIVWNI------EPVAKIEEDSIPGIEGI------ 140
Query: 107 SPLNESEKQRSNLNNSVYIGPMPPNGDHHYLIQVYALDIPKLALKAPFFLGDLHDKMRNH 166
+N Y GP PP+G H + +VYALD +L LKA +L +M H
Sbjct: 141 ----------NNFREIGYGGPCPPSGTHRFFFRVYALD-RQLELKAGAGRKELESEMIGH 189
Query: 167 IIAIG 171
IIA G
Sbjct: 190 IIAEG 194
>ref|NP_628200.1| (NC_003888) conserved hypothetical protein [Streptomyces coelicolor
A3(2)]
emb|CAC32358.1| (AL583945) conserved hypothetical protein [Streptomyces coelicolor
A3(2)]
Length = 177
Score = 51.2 bits (121), Expect = 5e-06
Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 38 SPKISWQKV-EGAQSYALELIDHDAQKVCGMPFVHWVVGNIAHNVLEENASMMDKRIVQG 96
SP++SW EG +SYA+ + D DA G F HW V +I V E D
Sbjct: 45 SPQLSWSGAPEGTRSYAVTVYDPDAPT--GSGFWHWAVADIPAAVTELPEGAGDDT---- 98
Query: 97 VNSLTQGFIRSPLNESEKQRSNLNNSVYIGPMPP--NGDHHYLIQVYALDIPKLALKAPF 154
L +G + P N++ R YIG PP +G H Y + V+ALD+ + + A
Sbjct: 99 GPGLPEGAFQLP-NDARAAR-------YIGAAPPAGHGPHRYFVVVHALDVESIGIPADA 150
Query: 155 FLGDLHDKMRNHII 168
L M HI+
Sbjct: 151 TPAVLGFTMAGHIL 164
>ref|NP_634424.1| (NC_003901) hypothetical protein [Methanosarcina mazei Goe1]
gb|AAM32096.1| (AE013483) hypothetical protein [Methanosarcina mazei Goe1]
Length = 194
Score = 50.1 bits (118), Expect = 1e-05
Identities = 39/125 (31%), Positives = 55/125 (43%), Gaps = 26/125 (20%)
Query: 47 EGAQSYALELIDHDAQKVCGMPFVHWVVGNIAHNVLEENASMMDKRIVQGVNSLTQGFIR 106
E +S L + D D+ PF HW+V NI E + +++ + G+ +
Sbjct: 87 EETESLVLIMDDPDSPM---NPFTHWIVWNI------EPVAKIEEDSIPGIEGM------ 131
Query: 107 SPLNESEKQRSNLNNSVYIGPMPPNGDHHYLIQVYALDIPKLALKAPFFLGDLHDKMRNH 166
+N Y GP P +G H Y +VYALD KL LKA +L +M H
Sbjct: 132 ----------NNFRKIGYGGPCPSSGTHRYFFKVYALD-RKLELKAGSGRKELESEMIGH 180
Query: 167 IIAIG 171
IIA G
Sbjct: 181 IIAEG 185
>ref|NP_661500.1| (NC_002932) conserved hypothetical protein [Chlorobium tepidum TLS]
gb|AAM71842.1| (AE012833) conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 191
Score = 49.7 bits (117), Expect = 2e-05
Identities = 48/175 (27%), Positives = 71/175 (40%), Gaps = 31/175 (17%)
Query: 6 VMIQTDSKGYLDAKFGGNAPKAFLNSNGLPTY--------SPKISWQKV-EGAQSYALEL 56
VM++ KG +A AF N +P SP ++W+ + +G +S L +
Sbjct: 22 VMLRAGQKG--EAMTFELTSTAFRNMGAIPALYTCEGKNISPPLTWKNIPKGTKSLVLIV 79
Query: 57 IDHDAQKVCGMPF--VHWVVGNIAHNVLEENASMMDKRIVQGVNSLTQGFIRSPLN-ESE 113
D DA F VHWV+ NI G +G P E +
Sbjct: 80 DDPDAPDPAAPKFTWVHWVLYNIP----------------PGKTGFAEGAGNHPAETEMQ 123
Query: 114 KQRSNLNNSVYIGPMPPNGDHHYLIQVYALDIPKLALKAPFFLGDLHDKMRNHII 168
+ ++ N Y GP PP G H Y ++YALD L +P D+ M+ HI+
Sbjct: 124 EGFNSWNRGGYGGPCPPIGTHRYFFKLYALDTVIDDLLSP-LKADVEAAMQGHIL 177
>ref|NP_213857.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
sp|O67293|YC50_AQUAE Hypothetical protein AQ_1250
pir||B70408 conserved hypothetical protein aq_1250 - Aquifex aeolicus
gb|AAC07255.1| (AE000730) hypothetical protein [Aquifex aeolicus]
Length = 171
Score = 49.3 bits (116), Expect = 2e-05
Identities = 47/146 (32%), Positives = 60/146 (40%), Gaps = 23/146 (15%)
Query: 38 SPKISWQKV-EGAQSYALELIDHDAQKVCGMPFVHWVVGNIAHNVLEENASMMDKRIVQG 96
SP I W+ V EG +S+ L + D DA F HWVV +I E
Sbjct: 44 SPHIGWEDVPEGTKSFVLIMDDPDAPIGT---FTHWVVYDIPSQTRE------------- 87
Query: 97 VNSLTQGFIRSPLNESEKQRSNLNNSV-YIGPMPPNGD--HHYLIQVYALDIPKLALKAP 153
L + F + P KQ N V Y GP PP G H Y +V+AL + L L
Sbjct: 88 ---LLEDFPKVPEVSGIKQGINDFGRVGYGGPCPPRGHGYHRYFFKVFALSVESLGLPPG 144
Query: 154 FFLGDLHDKMRNHIIAIGRKEFLYKQ 179
D+ KM I+A LYK+
Sbjct: 145 ASRKDVELKMNGKILAQAHIIGLYKR 170
>ref|NP_275416.1| (NC_000916) conserved protein [Methanothermobacter
thermautotrophicus] [Methanothermobacter
thermautotrophicus str. Delta H]
sp|O26373|Y273_METTH Hypothetical protein MTH273
pir||E69134 conserved hypothetical protein MTH273 - Methanobacterium
thermoautotrophicum (strain Delta H)
gb|AAB84779.1| (AE000813) conserved protein [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 151
Score = 49.3 bits (116), Expect = 2e-05
Identities = 49/149 (32%), Positives = 66/149 (43%), Gaps = 31/149 (20%)
Query: 38 SPKISWQKVEG-AQSYALELIDHDAQKVCGMPFVHWVVGNIAHNV--LEEN---ASMMDK 91
SP +SW V G A+S AL D DA + HWV+ NI + LEEN A +
Sbjct: 26 SPPLSWDGVPGEAKSLALICDDPDAPSKV---WTHWVIFNIPPDSTGLEENVPDAGRLPD 82
Query: 92 RIVQGVN-SLTQGFIRSPLNESEKQRSNLNNSVYIGPMPPNGDHHYLIQVYALDIPKLAL 150
VQG N S T G Y GP PP+G H Y ++YALD L L
Sbjct: 83 GSVQGYNDSGTLG--------------------YRGPCPPSGVHRYFFRLYALD-TVLDL 121
Query: 151 KAPFFLGDLHDKMRNHIIAIGRKEFLYKQ 179
+ D+ + M H++ + LY++
Sbjct: 122 EPGASKEDVLEAMEGHVLGEAKLIGLYRR 150
>ref|NP_600739.1| (NC_003450) COG1881:Phospholipid-binding protein [Corynebacterium
glutamicum]
dbj|BAB98916.1| (AP005278) Phospholipid-binding protein [Corynebacterium glutamicum
ATCC 13032]
Length = 177
Score = 48.9 bits (115), Expect = 3e-05
Identities = 38/116 (32%), Positives = 53/116 (44%), Gaps = 22/116 (18%)
Query: 38 SPKISWQKV-EGAQSYALELIDHDAQKVCGMPFVHWVVGNIAHNVLEENASMMDKRI--V 94
SP++SW + EG +S A+ +D DA G F HW V NI V E D+ + +
Sbjct: 48 SPQLSWSDLPEGTKSLAITCLDPDAPTGAG--FWHWAVFNIPTTVTEIPTGAGDETLGGI 105
Query: 95 QGVNSLTQGFIRSPLNESEKQRSNLNNSVYIGPMPPNGD--HHYLIQVYALDIPKL 148
+GV SL + + + G PP G H YL V+ALD+ KL
Sbjct: 106 EGVVSL---------------KGDSGKRGFYGAQPPAGHAPHRYLFAVHALDVEKL 146
>ref|NP_216656.1| (NC_000962) hypothetical protein Rv2140c [Mycobacterium
tuberculosis H37Rv]
ref|NP_336668.1| (NC_002755) conserved hypothetical protein [Mycobacterium
tuberculosis CDC1551]
sp|O06235|YL40_MYCTU Hypothetical protein Rv2140c
pir||H70577 hypothetical protein Rv2140c - Mycobacterium tuberculosis (strain
H37RV)
emb|CAB08653.1| (Z95388) hypothetical protein Rv2140c [Mycobacterium tuberculosis
H37Rv]
gb|AAK46482.1| (AE007067) conserved hypothetical protein [Mycobacterium
tuberculosis CDC1551]
Length = 176
Score = 47.0 bits (110), Expect = 1e-04
Identities = 39/126 (30%), Positives = 62/126 (48%), Gaps = 22/126 (17%)
Query: 38 SPKISWQKVEG-AQSYALELIDHDAQKVCGMPFVHWVVGNIAHNVLEENASMMDKRIVQG 96
SP++ W +S+A+ + D DA + G F HW V N+ NV E + D R + G
Sbjct: 47 SPQLRWSGFPSETRSFAVTVYDPDAPTLSG--FWHWAVANLPANVTELPEGVGDGRELPG 104
Query: 97 VNSLTQGFIRSPLNESEKQRSNLNNSVYIGPMPP--NGDHHYLIQVYALDIPKLAL---K 151
+LT +N++ +R Y+G PP +G H Y + V+A+ + KL L
Sbjct: 105 -GALTL------VNDAGMRR-------YVGAAPPPGHGVHRYYVAVHAVKVEKLDLPEDA 150
Query: 152 APFFLG 157
+P +LG
Sbjct: 151 SPAYLG 156
>ref|NP_301926.1| (NC_002677) conserved hypothetical protein [Mycobacterium leprae]
emb|CAC31670.1| (AL583921) conserved hypothetical protein [Mycobacterium leprae]
Length = 176
Score = 45.1 bits (105), Expect = 4e-04
Identities = 40/127 (31%), Positives = 61/127 (47%), Gaps = 24/127 (18%)
Query: 38 SPKISWQKVEGAQ-SYALELIDHDAQKVCGMPFVHWVVGNIAHNVLEENASM-MDKRIVQ 95
SP++SW S+A+ + D DA + G F HW V N+ +V E A + D +
Sbjct: 47 SPQLSWSGFPTETCSFAVTVYDPDAPTLSG--FWHWAVANLPADVTELPAGVGNDGELPA 104
Query: 96 GVNSLTQGFIRSPLNESEKQRSNLNNSVYIGPMPP--NGDHHYLIQVYALDIPKLALK-- 151
G +L +N++ +R YIG PP +G H Y + V+A+ + KL L
Sbjct: 105 GALTL--------INDAGMRR-------YIGAAPPPGHGVHRYYVAVHAVRVQKLNLSED 149
Query: 152 -APFFLG 157
+P FLG
Sbjct: 150 ASPAFLG 156
>ref|NP_299449.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||G82589 conserved hypothetical protein XF2170 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF84969.1|AE004031_1 (AE004031) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 204
Score = 44.7 bits (104), Expect = 5e-04
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 35 PTYSPKISWQKV-EGAQSYALELIDHDAQKVCG---------------MPFVHWVVGN-- 76
P +P ++W V E +S+AL ID D + + FVHWV+ +
Sbjct: 28 PNRNPHLAWDDVPENTRSFALLCIDPDVPSIPETIGRTDMEIPVTQPRIDFVHWVMADLS 87
Query: 77 -----IAHNVLEENASMMDKRIVQGVNSLTQGFIRSPLNESEKQRSNLNNSV-----YIG 126
IAH + + K + G QG LN+ K +N Y G
Sbjct: 88 ADLRMIAHGSCSDGFVVRGKTMPPGPAGTRQG-----LNDYTKFFANTPEMAGDYYGYDG 142
Query: 127 PMPPNGD---HHYLIQVYALDIPKLALKAPFFLGDLHDKMRNHII 168
P PP D H YL +++AL++ +L L F L ++ H++
Sbjct: 143 PYPPFNDLRIHRYLFRLFALNLERLPLPQHFDGPALLRAIQGHVL 187
>ref|NP_459770.1| (NC_003197) putative Phospholipid-binding protein [Salmonella
typhimurium LT2]
gb|AAL19729.1| (AE008732) putative Phospholipid-binding protein [Salmonella
typhimurium LT2]
Length = 158
Score = 44.7 bits (104), Expect = 5e-04
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 17/113 (15%)
Query: 38 SPKISWQKVE-GAQSYALELIDHDAQKVCGMPFVHWVVGNIAHNVLEENASMMDKRIVQG 96
SP ++W V G +S+ + D DA G + HWVV N L + ++ + G
Sbjct: 31 SPHLAWDNVPMGTKSFVVTCYDPDAPT--GSGWWHWVVVN-----LPADTRVLTQGFGSG 83
Query: 97 VNSLTQGFIRSPLNESEKQRSNLNNSVYIGPMPPNGD-HHYLIQVYALDIPKL 148
+ ++ G I++ R++ + Y G PP G+ H Y+ V+ALD+ +L
Sbjct: 84 LVAVPDGVIQT--------RTDFGKAGYGGAAPPKGETHRYIFTVHALDVERL 128
>ref|NP_521585.1| (NC_003296) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
emb|CAD17175.1| (AL646076) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
Length = 159
Score = 44.7 bits (104), Expect = 5e-04
Identities = 43/137 (31%), Positives = 59/137 (42%), Gaps = 23/137 (16%)
Query: 38 SPKISWQKVE-GAQSYALELIDHDAQKVCG--MPFVHWVVGNI--AHNVLEENASMMDKR 92
SP ++W + G +S AL + D DA M +VHWV+ NI A L E+A+
Sbjct: 28 SPPLAWTGLPAGTRSLALIVDDPDAPDPAAPRMTWVHWVLYNIPPATAALAEDAAR--SH 85
Query: 93 IVQGVNSLTQGFIRSPLNESEKQRSNLNNSVYIGPMPPNGDHHYLIQVYALDIPKLALKA 152
+ G T G+ R+ Y GP PP G H Y ++YALD L
Sbjct: 86 LPSGTREGTNGWQRTG---------------YGGPCPPIGRHRYFHKLYALDTELPDLGT 130
Query: 153 PFFLGDLHDKMRNHIIA 169
P L M H++A
Sbjct: 131 P-DKAALERAMHGHVLA 146
>ref|NP_455334.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
emb|CAD05240.1| (AL627268) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 158
Score = 44.3 bits (103), Expect = 7e-04
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 17/113 (15%)
Query: 38 SPKISWQKVE-GAQSYALELIDHDAQKVCGMPFVHWVVGNIAHNVLEENASMMDKRIVQG 96
SP ++W V G +S+ + D DA G + HWVV N L + ++ + G
Sbjct: 31 SPHLAWDDVPMGTKSFVVTCYDPDAPT--GSGWWHWVVVN-----LPADTRVLTQGFGSG 83
Query: 97 VNSLTQGFIRSPLNESEKQRSNLNNSVYIGPMPPNGD-HHYLIQVYALDIPKL 148
+ ++ G I++ R++ + Y G PP G+ H Y+ V+ALD+ +L
Sbjct: 84 LVAVPDGVIQT--------RTDFGKAGYGGAAPPKGETHRYIFTVHALDVERL 128
>ref|NP_126834.1| (NC_000868) hypothetical protein [Pyrococcus abyssi]
sp|Q9UZJ3|Y765_PYRAB Hypothetical protein PAB0765
pir||C75095 hypothetical protein PAB0765 - Pyrococcus abyssi (strain Orsay)
emb|CAB50064.1| (AJ248286) hypothetical protein [Pyrococcus abyssi]
Length = 186
Score = 44.3 bits (103), Expect = 7e-04
Identities = 42/135 (31%), Positives = 60/135 (44%), Gaps = 19/135 (14%)
Query: 47 EGAQSYALELIDHDAQKVCGMPFVHWVVGNIAHNVLEENASMMDKRIVQGVNSLTQGFIR 106
E A+S + + D DA F HW+ NI +EE I +G+ QG +
Sbjct: 68 ENAKSLVIIVDDPDAPLGT---FTHWIAWNIPP--VEE--------IPEGIPK--QGEVE 112
Query: 107 SPLNESEKQRSNLNNSVYIGPMPPNGD--HHYLIQVYALDIPKLALKAPFFLGDLHDKMR 164
P++ + R++ Y GP PP G HHY +VY LD L L+ +L M
Sbjct: 113 KPIHMIQG-RNDFGRIGYNGPCPPRGHGVHHYHFKVYVLD-TTLNLRPGATREELEKAME 170
Query: 165 NHIIAIGRKEFLYKQ 179
HII G LY++
Sbjct: 171 GHIIQFGELVGLYER 185
>gb|AAG60561.1|AF250769_2 (AF250769) unknown [uncultured bacterium pCosHE1]
Length = 158
Score = 43.9 bits (102), Expect = 9e-04
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 17/113 (15%)
Query: 38 SPKISWQKVE-GAQSYALELIDHDAQKVCGMPFVHWVVGNIAHNVLEENASMMDKRIVQG 96
SP ++W V G +S+ + D DA G + HWVV N L + ++ +
Sbjct: 31 SPHLAWDDVPAGTKSFVVTCYDPDAPT--GSGWWHWVVAN-----LPADTRVLPQGSGSD 83
Query: 97 VNSLTQGFIRSPLNESEKQRSNLNNSVYIGPMPPNGD-HHYLIQVYALDIPKL 148
+ +L +G I++ R++ + Y G PP G+ H Y+ V+ALD+ K+
Sbjct: 84 LVALPEGAIQT--------RTDFGKAGYGGAAPPKGETHRYIFTVHALDVEKI 128
>gb|AAG60577.1|AF250776_1 (AF250776) hypothetical 17.1 kDa protein in modC-bioA intergenic
region [uncultured bacterium pCosHE2]
Length = 158
Score = 43.9 bits (102), Expect = 9e-04
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 17/113 (15%)
Query: 38 SPKISWQKVE-GAQSYALELIDHDAQKVCGMPFVHWVVGNIAHNVLEENASMMDKRIVQG 96
SP ++W V G +S+ + D DA G + HWVV N L + ++ + G
Sbjct: 31 SPHLAWDDVPAGTKSFVVTCYDPDAPT--GSGWWHWVVVN-----LPADTRVLPQGFGSG 83
Query: 97 VNSLTQGFIRSPLNESEKQRSNLNNSVYIGPMPPNGD-HHYLIQVYALDIPKL 148
+ ++ G +++ R++ + Y G PP G+ H Y+ V+ALDI ++
Sbjct: 84 LVAMPDGVLQT--------RTDFGKAGYDGAAPPKGETHRYIFTVHALDIERI 128
>gb|AAA23513.1| (J04423) ORF 1 [Escherichia coli]
Length = 158
Score = 43.9 bits (102), Expect = 9e-04
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 17/113 (15%)
Query: 38 SPKISWQKVE-GAQSYALELIDHDAQKVCGMPFVHWVVGNIAHNVLEENASMMDKRIVQG 96
SP ++W V G +S+ + D DA G + HWVV N L + ++ + G
Sbjct: 31 SPHLAWDDVPAGTKSFVVTCYDPDAPT--GSGWWHWVVVN-----LPADTRVLPQGFGSG 83
Query: 97 VNSLTQGFIRSPLNESEKQRSNLNNSVYIGPMPPNGD-HHYLIQVYALDIPKL 148
+ ++ G +++ R++ + Y G PP G+ H Y+ V+ALDI ++
Sbjct: 84 LVAMPDGVLQT--------RTDFGKTGYDGAAPPKGETHRYIFTVHALDIERI 128
>ref|NP_415294.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P12994|YBHB_ECOLI Protein ybhB
pir||Q3ECBA conserved hypothetical protein ybhB - Escherichia coli
gb|AAC73860.1| (AE000180) orf, hypothetical protein [Escherichia coli K12]
Length = 158
Score = 43.9 bits (102), Expect = 9e-04
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 17/113 (15%)
Query: 38 SPKISWQKVE-GAQSYALELIDHDAQKVCGMPFVHWVVGNIAHNVLEENASMMDKRIVQG 96
SP ++W V G +S+ + D DA G + HWVV N L + ++ + G
Sbjct: 31 SPHLAWDDVPAGTKSFVVTCYDPDAPT--GSGWWHWVVVN-----LPADTRVLPQGFGSG 83
Query: 97 VNSLTQGFIRSPLNESEKQRSNLNNSVYIGPMPPNGD-HHYLIQVYALDIPKL 148
+ ++ G +++ R++ + Y G PP G+ H Y+ V+ALDI ++
Sbjct: 84 LVAMPDGVLQT--------RTDFGKTGYDGAAPPKGETHRYIFTVHALDIERI 128
>ref|NP_225072.1| (NC_000922) YbcL family-CT736 hypothetical protein [Chlamydophila
pneumoniae CWL029]
ref|NP_300934.1| (NC_002491) YbcL family-CT736 hypothetical protein [Chlamydophila
pneumoniae J138]
ref|NP_445529.1| (NC_002179) conserved hypothetical protein [Chlamydophila
pneumoniae AR39]
sp|Q9Z729|Y877_CHLPN Protein CPn0877/CP0992/CPj0877
pir||C72024 conserved hypothetical protein CP0992 [imported] - Chlamydophila
pneumoniae (strains CWL029 and AR39)
gb|AAD19015.1| (AE001668) YbcL family-CT736 hypothetical protein [Chlamydophila
pneumoniae CWL029]
gb|AAF38771.1| (AE002257) conserved hypothetical protein [Chlamydophila pneumoniae
AR39]
dbj|BAA99085.1| (AP002548) YbcL family-CT736 hypothetical protein [Chlamydophila
pneumoniae J138]
Length = 150
Score = 43.5 bits (101), Expect = 0.001
Identities = 42/136 (30%), Positives = 61/136 (43%), Gaps = 28/136 (20%)
Query: 38 SPKISWQKVEGA-QSYALELIDHDAQKVCGMP--FVHWVVGNIAHNV--LEENASMMDKR 92
SP +++ V GA QS AL + D D K ++HW+V N++ + L E A +
Sbjct: 26 SPPLTFVDVPGAAQSLALIVEDPDVPKEIRSDGLWIHWIVYNLSTTITNLAEGAEIF--- 82
Query: 93 IVQGVNSLTQGFIRSPLNESEKQRSNLNNSVYIGPMPPNGDHHYLIQVYALDIPKLALKA 152
VQG+N T G VY GP PP+ H Y ++ALD+ L +
Sbjct: 83 AVQGLN--TSG-----------------KPVYEGPCPPDKQHRYFFTLFALDV-VLPEEE 122
Query: 153 PFFLGDLHDKMRNHII 168
L++ M HII
Sbjct: 123 NVTRDQLYEAMEFHII 138
>ref|NP_286536.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_308878.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
gb|AAG55144.1|AE005258_8 (AE005258) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB34274.1| (AP002553) hypothetical protein [Escherichia coli O157:H7]
Length = 158
Score = 43.5 bits (101), Expect = 0.001
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 17/113 (15%)
Query: 38 SPKISWQKVE-GAQSYALELIDHDAQKVCGMPFVHWVVGNIAHNVLEENASMMDKRIVQG 96
SP ++W V G +S+ + D DA G + HWVV N L + ++ + G
Sbjct: 31 SPHLAWDDVPAGTKSFVVTCYDPDAPT--GSGWWHWVVVN-----LPADTRVLPQGFGSG 83
Query: 97 VNSLTQGFIRSPLNESEKQRSNLNNSVYIGPMPPNGD-HHYLIQVYALDIPKL 148
+ ++ G +++ R++ + Y G PP G+ H Y+ V+ALD+ ++
Sbjct: 84 LVAMPDGVLQT--------RTDFGKTGYDGAAPPKGETHRYIFTVHALDVERI 128
>ref|NP_143160.1| (NC_000961) hypothetical protein [Pyrococcus horikoshii]
sp|O58984|YC69_PYRHO Hypothetical protein PH1269
pir||B71072 hypothetical protein PH1269 - Pyrococcus horikoshii
dbj|BAA30372.1| (AP000005) 198aa long hypothetical protein [Pyrococcus horikoshii]
Length = 198
Score = 43.5 bits (101), Expect = 0.001
Identities = 42/139 (30%), Positives = 59/139 (42%), Gaps = 19/139 (13%)
Query: 45 KVEGAQSY--ALELIDHDAQKVCGMPFVHWVVGNIAHNVLEENASMMDKRIVQGVNSLTQ 102
K+EG +L +I D G F HW+ NI I +G+ Q
Sbjct: 74 KIEGLSDNVKSLVIIVDDPDAPMGT-FTHWIAWNIPPVT----------EIPEGIPK--Q 120
Query: 103 GFIRSPLNESEKQRSNLNNSVYIGPMPPNGD--HHYLIQVYALDIPKLALKAPFFLGDLH 160
G + P++ + R++ Y GP PP G HHY +VYALD L LK +L
Sbjct: 121 GEVDKPIHIIQG-RNDFGRIGYNGPCPPRGHGVHHYHFKVYALD-TTLNLKPGASRKELE 178
Query: 161 DKMRNHIIAIGRKEFLYKQ 179
M H+I G LY++
Sbjct: 179 KAMEGHVIQYGELVGLYER 197
>pdb|1FJJ|A Chain A, Crystal Structure Of E.Coli Ybhb Protein, A New Member Of
The Mammalian Pebp Family
Length = 159
Score = 43.1 bits (100), Expect = 0.001
Identities = 35/114 (30%), Positives = 55/114 (47%), Gaps = 19/114 (16%)
Query: 38 SPKISWQKVE-GAQSYALELIDHDAQKVCGMPFVHWVVGNIAHNVLEENASMMDKRIV-Q 95
SP ++W V G +S+ + D DA G + HWVV N+ D R++ Q
Sbjct: 32 SPHLAWDDVPAGTKSFVVTCYDPDAPT--GSGWWHWVVVNLP----------ADTRVLPQ 79
Query: 96 GVNSLTQGFIRSPLNESEKQRSNLNNSVYIGPMPPNGD-HHYLIQVYALDIPKL 148
G S G + P + + R++ + Y G PP G+ H Y+ V+ALDI ++
Sbjct: 80 GFGS---GLVAXP-DGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVHALDIERI 129
>ref|NP_626064.1| (NC_003888) conserved hypothetical protein [Streptomyces coelicolor
A3(2)]
sp|Q9X9Z8|YH94_STRCO Hypothetical protein SCO1794
pir||T36855 conserved hypothetical protein SCI5.02 - Streptomyces coelicolor
emb|CAB45286.1| (AL079332) conserved hypothetical protein [Streptomyces coelicolor
A3(2)]
Length = 179
Score = 42.4 bits (98), Expect = 0.003
Identities = 42/141 (29%), Positives = 61/141 (42%), Gaps = 23/141 (16%)
Query: 38 SPKISWQKVEG-AQSYALELIDHDAQKVCGMPFVHWVVGNIAHNVLEENASMMDKRIVQG 96
SP + W+ +S+A+ D DA G F HWVV +I +V E
Sbjct: 45 SPHLRWEGFPAETKSFAVTCYDPDAPT--GSGFWHWVVFDIPASVTELPVGAGSGAF--- 99
Query: 97 VNSLTQGFIRSPLNESEKQRSNLNNSVYIGPMPPNGD--HHYLIQVYALDIPKLALKA-- 152
L QG +++ R++ + + G PP GD H Y+ VYA+D KL A
Sbjct: 100 -EGLPQGAVQA--------RNDYGSKGFGGAAPPPGDGPHRYVFTVYAVDQEKLGPDADG 150
Query: 153 -PFFLG---DLHDKMRNHIIA 169
P F+G H R H+I+
Sbjct: 151 TPAFVGFNLRFHTIARAHLIS 171
>ref|NP_336420.1| (NC_002755) phosphatidylethanolamine-binding protein [Mycobacterium
tuberculosis CDC1551]
sp|O07722|YJ11_MYCTU Hypothetical protein Rv1911c
gb|AAK46234.1| (AE007051) phosphatidylethanolamine-binding protein [Mycobacterium
tuberculosis CDC1551]
Length = 205
Score = 40.4 bits (93), Expect = 0.010
Identities = 36/118 (30%), Positives = 50/118 (41%), Gaps = 27/118 (22%)
Query: 38 SPKISWQKVEGAQSYALELIDHDAQKVCGMPFVHWVVGNIAHNVLEENASMMDKRIVQGV 97
+P ++W GA AL + D DA G +VHW+V IA + S D + G
Sbjct: 85 APPLTWSSPAGAAELALVVDDPDA---VGGLYVHWIVTGIAPG----SGSTADGQTPAGG 137
Query: 98 NSLTQGFIRSPLNESEKQRSNLNNSVYIGPMPP--NGDHHYLIQVYALDIPKLALKAP 153
+S+ N +Q Y GP PP G HHY +Y L + AL+ P
Sbjct: 138 HSVP--------NSGGRQG-------YFGPCPPAGTGTHHYRFTLYHLPV---ALQLP 177
>ref|NP_216427.1| (NC_000962) lppC [Mycobacterium tuberculosis H37Rv]
pir||D70519 probable lppC protein - Mycobacterium tuberculosis (strain H37RV)
emb|CAB10030.1| (Z97193) lppC [Mycobacterium tuberculosis H37Rv]
Length = 201
Score = 40.4 bits (93), Expect = 0.010
Identities = 36/118 (30%), Positives = 50/118 (41%), Gaps = 27/118 (22%)
Query: 38 SPKISWQKVEGAQSYALELIDHDAQKVCGMPFVHWVVGNIAHNVLEENASMMDKRIVQGV 97
+P ++W GA AL + D DA G +VHW+V IA + S D + G
Sbjct: 81 APPLTWSSPAGAAELALVVDDPDA---VGGLYVHWIVTGIAPG----SGSTADGQTPAGG 133
Query: 98 NSLTQGFIRSPLNESEKQRSNLNNSVYIGPMPP--NGDHHYLIQVYALDIPKLALKAP 153
+S+ N +Q Y GP PP G HHY +Y L + AL+ P
Sbjct: 134 HSVP--------NSGGRQG-------YFGPCPPAGTGTHHYRFTLYHLPV---ALQLP 173
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.137 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,985,554
Number of Sequences: 1026957
Number of extensions: 4897155
Number of successful extensions: 8988
Number of sequences better than 1.0e-02: 39
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 8957
Number of HSP's gapped (non-prelim): 39
length of query: 183
length of database: 324,149,939
effective HSP length: 114
effective length of query: 69
effective length of database: 207,076,841
effective search space: 14288302029
effective search space used: 14288302029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 93 (40.4 bits)