BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644847|ref|NP_207017.1| hypothetical protein
[Helicobacter pylori 26695]
         (159 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207017.1|  (NC_000915) hypothetical protein [Helicoba...   313  5e-85
ref|NP_222926.1|  (NC_000921) putative [Helicobacter pylori ...   290  5e-78
ref|NP_559438.1|  (NC_003364) conserved hypothetical protein...    42  0.003

>ref|NP_207017.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||C64547 hypothetical protein HP0219 - Helicobacter pylori (strain 26695)
 gb|AAD07295.1| (AE000542) H. pylori predicted coding region HP0219 [Helicobacter
           pylori 26695]
          Length = 159

 Score =  313 bits (801), Expect = 5e-85
 Identities = 159/159 (100%), Positives = 159/159 (100%)

Query: 1   MVSIERMESKINRLSTKIDALLEQQKRVISLLETYLSVYPTQEASNKFFKSVAQGMELAP 60
           MVSIERMESKINRLSTKIDALLEQQKRVISLLETYLSVYPTQEASNKFFKSVAQGMELAP
Sbjct: 1   MVSIERMESKINRLSTKIDALLEQQKRVISLLETYLSVYPTQEASNKFFKSVAQGMELAP 60

Query: 61  EIAQEDEEKRLYVLQYLSHVDITKNKQDSQLKKDCLEFIQRFNVPKPIIITALYNLRGIK 120
           EIAQEDEEKRLYVLQYLSHVDITKNKQDSQLKKDCLEFIQRFNVPKPIIITALYNLRGIK
Sbjct: 61  EIAQEDEEKRLYVLQYLSHVDITKNKQDSQLKKDCLEFIQRFNVPKPIIITALYNLRGIK 120

Query: 121 PTKKEVAKQLQKLYVWEKRYQQGGIDALKDRRGRPLKKP 159
           PTKKEVAKQLQKLYVWEKRYQQGGIDALKDRRGRPLKKP
Sbjct: 121 PTKKEVAKQLQKLYVWEKRYQQGGIDALKDRRGRPLKKP 159



>ref|NP_222926.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||H71959 hypothetical protein jhp0205 - Helicobacter pylori (strain J99)
 gb|AAD05788.1| (AE001459) putative [Helicobacter pylori J99]
          Length = 161

 Score =  290 bits (741), Expect = 5e-78
 Identities = 145/160 (90%), Positives = 155/160 (96%), Gaps = 1/160 (0%)

Query: 1   MVSIERMESKINRLSTKIDALLEQQKRVISLLETYLSVYPT-QEASNKFFKSVAQGMELA 59
           +V+IERMES+INRLS KIDALLEQQK+VISLLETYLSVY T QEASNK FK ++QGMELA
Sbjct: 2   VVTIERMESRINRLSAKIDALLEQQKKVISLLETYLSVYSTPQEASNKLFKGISQGMELA 61

Query: 60  PEIAQEDEEKRLYVLQYLSHVDITKNKQDSQLKKDCLEFIQRFNVPKPIIITALYNLRGI 119
           PEIAQEDEEKRLYVLQYLSHVDITKNKQDSQLKKDCLEFIQRFN+PKPII+TALYNL+GI
Sbjct: 62  PEIAQEDEEKRLYVLQYLSHVDITKNKQDSQLKKDCLEFIQRFNIPKPIIVTALYNLKGI 121

Query: 120 KPTKKEVAKQLQKLYVWEKRYQQGGIDALKDRRGRPLKKP 159
           KPTKKEVAKQLQKLYVWE+RYQQGGIDALKDRRGRPLKKP
Sbjct: 122 KPTKKEVAKQLQKLYVWERRYQQGGIDALKDRRGRPLKKP 161



>ref|NP_559438.1| (NC_003364) conserved hypothetical protein [Pyrobaculum aerophilum]
 gb|AAL63620.1| (AE009831) conserved hypothetical protein [Pyrobaculum aerophilum]
          Length = 329

 Score = 41.6 bits (96), Expect = 0.003
 Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 18/131 (13%)

Query: 23  EQQKRVISLLETYLSVYPTQ-EASNKFFKSVAQGMELAPEIAQEDEEKRLYVLQYLSHVD 81
           E+ KR+I  LE +    PT  E   +F K ++Q +E    +A   E+ + ++ +  + +D
Sbjct: 124 EKLKRIIEQLEYFFETSPTNPEWERQFIKYISQ-IEKELNLADSMEKVKAHIAELKAQID 182

Query: 82  ITKNKQDSQLKKDCLEFIQRFNVPKPIIITALYNLRGIKPTKKEVAKQLQKLYVWEKRYQ 141
             KNK++S ++ +    +Q        + T    L  +K +++E+ K+L KL   EKR  
Sbjct: 183 DFKNKRES-IRNEIARLVQD-------LTTVKQELSQLKASRQEIYKELTKLK--EKR-- 230

Query: 142 QGGIDALKDRR 152
               + LK RR
Sbjct: 231 ----EELKKRR 237



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.317    0.134    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,111,561
Number of Sequences: 1026957
Number of extensions: 3414584
Number of successful extensions: 10966
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10963
Number of HSP's gapped (non-prelim): 3
length of query: 159
length of database: 324,149,939
effective HSP length: 111
effective length of query: 48
effective length of database: 210,157,712
effective search space: 10087570176
effective search space used: 10087570176
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 92 (40.0 bits)