BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644850|ref|NP_207020.1| hypothetical protein
[Helicobacter pylori 26695]
(73 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207020.1| (NC_000915) hypothetical protein [Helicoba... 145 1e-34
ref|NP_222929.1| (NC_000921) putative [Helicobacter pylori ... 136 5e-32
ref|NP_223229.1| (NC_000921) putative [Helicobacter pylori ... 47 4e-05
pir||D64590 hypothetical protein HP0564 - Helicobacter pylo... 46 8e-05
>ref|NP_207020.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64547 hypothetical protein HP0222 - Helicobacter pylori (strain 26695)
gb|AAD07296.1| (AE000542) H. pylori predicted coding region HP0222 [Helicobacter
pylori 26695]
Length = 73
Score = 145 bits (366), Expect = 1e-34
Identities = 73/73 (100%), Positives = 73/73 (100%)
Query: 1 MEKTENTDETRLRGTKNKLGRKPKADANKKTRAVSLYFSDEQYQKLEKMANEEEESVGSY 60
MEKTENTDETRLRGTKNKLGRKPKADANKKTRAVSLYFSDEQYQKLEKMANEEEESVGSY
Sbjct: 1 MEKTENTDETRLRGTKNKLGRKPKADANKKTRAVSLYFSDEQYQKLEKMANEEEESVGSY 60
Query: 61 IKRYILKALRKIE 73
IKRYILKALRKIE
Sbjct: 61 IKRYILKALRKIE 73
>ref|NP_222929.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71960 hypothetical protein jhp0208 - Helicobacter pylori (strain J99)
gb|AAD05791.1| (AE001459) putative [Helicobacter pylori J99]
Length = 86
Score = 136 bits (343), Expect = 5e-32
Identities = 69/73 (94%), Positives = 70/73 (95%)
Query: 1 MEKTENTDETRLRGTKNKLGRKPKADANKKTRAVSLYFSDEQYQKLEKMANEEEESVGSY 60
M+ TENTDET LR TKNKLGRKPKADANKKTRAVSLYFSDEQYQKLEKMANEEEESVGSY
Sbjct: 1 MKTTENTDETHLRETKNKLGRKPKADANKKTRAVSLYFSDEQYQKLEKMANEEEESVGSY 60
Query: 61 IKRYILKALRKIE 73
IKRYILKALRKIE
Sbjct: 61 IKRYILKALRKIE 73
>ref|NP_223229.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71923 hypothetical protein jhp0511 - Helicobacter pylori (strain J99)
gb|AAD06087.1| (AE001484) putative [Helicobacter pylori J99]
Length = 81
Score = 47.4 bits (111), Expect = 4e-05
Identities = 27/58 (46%), Positives = 39/58 (66%), Gaps = 2/58 (3%)
Query: 14 GTKN-KLGRKPKA-DANKKTRAVSLYFSDEQYQKLEKMANEEEESVGSYIKRYILKAL 69
G KN K GRK A D K+ +V+ Y S E++ L ++A+EE ESV S++KR+ILK +
Sbjct: 4 GNKNIKPGRKRVAVDELKRNFSVTFYLSKEEHDVLRRLADEEVESVNSFVKRHILKTI 61
>pir||D64590 hypothetical protein HP0564 - Helicobacter pylori (strain 26695)
Length = 78
Score = 46.2 bits (108), Expect = 8e-05
Identities = 26/58 (44%), Positives = 39/58 (66%), Gaps = 2/58 (3%)
Query: 14 GTKN-KLGRKPKA-DANKKTRAVSLYFSDEQYQKLEKMANEEEESVGSYIKRYILKAL 69
G KN K GRK A D K+ +V+ Y S +++ L ++A+EE ESV S++KR+ILK +
Sbjct: 1 GNKNIKPGRKRVAVDELKRNFSVTFYLSKDEHDVLRRLADEEVESVNSFVKRHILKTI 58
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.306 0.125 0.320
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,511,525
Number of Sequences: 1026957
Number of extensions: 1300500
Number of successful extensions: 3243
Number of sequences better than 1.0e-02: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3239
Number of HSP's gapped (non-prelim): 4
length of query: 73
length of database: 324,149,939
effective HSP length: 49
effective length of query: 24
effective length of database: 273,829,046
effective search space: 6571897104
effective search space used: 6571897104
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 90 (39.3 bits)